Psyllid ID: psy2626

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
Protein Sequence
MHTYYDDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTNDQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS
Secondary Structure (PSIPRED)
ccEEccccccccccccccEEEEccccHHHHHHHHcccccHHHHHccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccEEEEEEccccccccccccEEEEEEEEcccEEEEcccccccccccccccEEEEEccEEcccccccEEEEEEEEEEccccccccccccEEEEEEcccccccccccccccccccccccccccccccEEEEccccccccccccccEEEEEEEEcHHHHHHHHHcccccccccEEEEccccccccccccccccccEEEcccEEEEEEEEEcccccccccccEEEEcccccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEcccccccHHHHcccccccHHHcccEEEEEccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEEEEEcccccccccccEEEEEEEEEccEEEEEHHHHcccccccccEEEEEEEEEEcccccccEEEEEEEEEEccccccccccccEEEEEEcccccccccEcEEEcccccHcccccccccEEEEEEccccccccccHHHHEEEEEEEccHHHHHHHHHHccccccccEEEEcccccccEccccccccEEEEEEccEEEEEEEEEEcccccEccEcEEEEEHHHHHHHHHHHHH
Coil and Loop (DISEMBL)
mhtyyddslcstprneigtcisirqCRYLYDILnnernnpravqyvknshcglegrlpkvccpqhtltndqpttttrrpnnrngaftklpspdnnecgvnafnsskrivggtpsergqwpwMAAIGFKIRrrrangkpewmcggalITKRYVLTAahcvspdttgeyepyiVHVGsidledtssgvsieierpiiheqYTSARKLNDIALFRlredaplsdliqpiclpydtnlrselferktpfvagwgstvfrgplspklrhvqisvvdnpkcrqiFSNYGATINENILCAGvlsggkdscggdsggplmypldtkyYIIGVVSYGkkcaevgfpgvytRVTNYIQWIADNIS
Flexible Loop (DISEMBL)
mhtyyddslcstprneigtcISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGrlpkvccpqhtltndqpttttrrpnnrngaftklpspdnneCGVNAFNSSKRivggtpsergqwpWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIErpiiheqytsaRKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERktpfvagwgstvfrgplspklRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS
Low Complexity Region (SEG)
MHTYYDDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTNDQpttttrrpnnrnGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLsggkdscggdsggPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS
Disordered region (IsUnstruct)
*******SLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQH**************************************************RGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIAD***
Disordered Region (DISOPRED)
**TYYDDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHT****************************NECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP*SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS
Disordered Region (DISEMBL)
MHTYYDDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTNDQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS
Disordered Region (DISPRO)
*****DDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTNDQP***************KLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHTYYDDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTNDQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	355	2.2.26 [Sep-21-2011]
P21902	375	Proclotting enzyme OS=Tac	N/A	N/A	0.921	0.872	0.393	4e-64
Q7M4I3	243	Venom protease OS=Megabom	N/A	N/A	0.647	0.946	0.444	4e-55
P13582	392	Serine protease easter OS	no	N/A	0.932	0.844	0.347	4e-47
Q27081	400	Clotting factor B OS=Tach	N/A	N/A	0.887	0.787	0.325	6e-43
P05049	435	Serine protease snake OS=	no	N/A	0.876	0.714	0.350	3e-42
Q8K1T0	453	Transmembrane protease se	yes	N/A	0.763	0.598	0.361	5e-42
P57727	454	Transmembrane protease se	yes	N/A	0.754	0.590	0.353	7e-40
P03952	638	Plasma kallikrein OS=Homo	no	N/A	0.687	0.382	0.348	1e-38
O60235	418	Transmembrane protease se	no	N/A	0.670	0.569	0.369	4e-38
Q8IU80	811	Transmembrane protease se	no	N/A	0.718	0.314	0.334	1e-37

>sp|P21902|PCE_TACTR Proclotting enzyme OS=Tachypleus tridentatus PE=1 SV=1

 Score =  245 bits (625), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 142/361 (39%), Positives = 203/361 (56%), Gaps = 34/361 (9%)

Query: 6   DDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQ- 64
           ++ LCS    E GTC ++  CR L  +  N+ N       +K S CG EG  PKVCCP+ 
Sbjct: 36  EEELCSNRFTEEGTCKNVLDCRIL--LQKNDYN------LLKESICGFEGITPKVCCPKS 87

Query: 65  -HTLTNDQP---TTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWP 120
            H +++ Q    TTTT RP        ++P      CG++   ++ RI+GG  +  G WP
Sbjct: 88  SHVISSTQAPPETTTTERPPK------QIPPNLPEVCGIHN-TTTTRIIGGREAPIGAWP 140

Query: 121 WMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEP---YIVHVGSI 177
           WM A+  K       G     CGGAL+T R+V+TA+HCV      +  P   + V +G  
Sbjct: 141 WMTAVYIK-----QGGIRSVQCGGALVTNRHVITASHCVVNSAGTDVMPADVFSVRLGEH 195

Query: 178 DL---EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNL 234
           +L   +D S+ +   +     HE +  A  LNDIA+  L +    +D I+PICLPY   L
Sbjct: 196 NLYSTDDDSNPIDFAVTSVKHHEHFVLATYLNDIAILTLNDTVTFTDRIRPICLPY-RKL 254

Query: 235 RSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAG 294
           R +    + PF+ GWG+T F GP S  LR VQ+ + ++  CRQ +      I    +CAG
Sbjct: 255 RYDDLAMRKPFITGWGTTAFNGPSSAVLREVQLPIWEHEACRQAYEK-DLNITNVYMCAG 313

Query: 295 VLSGGKDSCGGDSGGPLMYPLDT-KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 353
              GGKD+C GDSGGP+M P+ T ++Y+IG+VS+GKKCA  GFPGVYT+VT ++ WIA++
Sbjct: 314 FADGGKDACQGDSGGPMMLPVKTGEFYLIGIVSFGKKCALPGFPGVYTKVTEFLDWIAEH 373

Query: 354 I 354
           +
Sbjct: 374 M 374

This enzyme is closely associated with an endotoxin-sensitive hemolymph coagulation system in limulus. Its active form catalyzes the conversion of coagulogen to insoluble coagulin gel.
Tachypleus tridentatus (taxid: 6853)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 8EC: 6

>sp|Q7M4I3|SP4_MEGPE Venom protease OS=Megabombus pennsylvanicus PE=1 SV=1

 Score =  215 bits (547), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 108/243 (44%), Positives = 153/243 (62%), Gaps = 13/243 (5%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG P++ G WPWM A+GF    R+    PEW CGG+L   R+VLTAAHC    +    
Sbjct: 1   VVGGKPAKLGAWPWMVALGFH-NYRQPKKSPEWKCGGSLRISRHVLTAAHCAIHRSL--- 56

Query: 168 EPYIVHVGSIDL---EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQ 224
             Y+V +  ++L   +D +  + + IE  +IH  Y  +   +DIA+ +L +D   S+ I+
Sbjct: 57  --YVVRIADLNLKRDDDGAHPIQMGIESKLIHPDYVYSEHHDDIAILKLEKDVSFSEYIR 114

Query: 225 PICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
           PICLP + +LR+  F    PFVAGWG   ++GPLS  L  VQ+ VV N  C++ +S+   
Sbjct: 115 PICLPIEESLRNNNFIGYNPFVAGWGRLRYKGPLSDALMEVQVPVVRNKVCKRAYSD--- 171

Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
            +++ ++CAG   G KDSC GDSGGPLM P ++ YY IGVVSYG +CA   +PGVYTRVT
Sbjct: 172 -VSDTVICAGYPKGRKDSCQGDSGGPLMIPQESTYYEIGVVSYGHECALPKYPGVYTRVT 230

Query: 345 NYI 347
           +Y+
Sbjct: 231 SYL 233

Megabombus pennsylvanicus (taxid: 28643)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P13582|EAST_DROME Serine protease easter OS=Drosophila melanogaster GN=ea PE=1 SV=3

 Score =  189 bits (479), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 184/368 (50%), Gaps = 37/368 (10%)

Query: 10  CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTN 69
           C TP  E   CI +  C+YLY +L           Y+  S CG       +CCP     +
Sbjct: 37  CITPNRERALCIHLEDCKYLYGLLTTTPLRDTDRLYLSRSQCGYTNGKVLICCPDRYRES 96

Query: 70  DQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKI 129
              TT   +PN  + +   LP     +CG N    S RI GG  ++  ++PWMA I +  
Sbjct: 97  SSETTPPPKPNVTSNSLLPLPG----QCG-NIL--SNRIYGGMKTKIDEFPWMALIEYT- 148

Query: 130 RRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTT-----------GEYEPYIVHVGSID 178
              ++ GK    CGG+LI+ RYV+TA+HCV+               GE++        +D
Sbjct: 149 ---KSQGKKGHHCGGSLISTRYVITASHCVNGKALPTDWRLSGVRLGEWDTNTNPDCEVD 205

Query: 179 LEDTSS----GVSIEIERPIIHEQYTSARK--LNDIALFRLREDAPLSDLIQPICLPYDT 232
           +          + + +ER I H  Y  A K  +NDIAL RL +    +D ++PICLP D 
Sbjct: 206 VRGMKDCAPPHLDVPVERTIPHPDYIPASKNQVNDIALLRLAQQVEYTDFVRPICLPLDV 265

Query: 233 NLRSELFERKTPFVAGWGSTVFRGPLSPKLR-HVQISVVDNPKCRQIFSNYGATINENIL 291
           NLRS  F+  T  VAGWG T      + KL+  V+ S +D  +C+ ++S+    + +  +
Sbjct: 266 NLRSATFDGITMDVAGWGKTEQLSASNLKLKAAVEGSRMD--ECQNVYSSQDILLEDTQM 323

Query: 292 CAGVLSGGKDSCGGDSGGPLM----YPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNY 346
           CAG    G DSC GDSGGPL+      ++T Y++ GVVS+G   C   G+PGVYT V  Y
Sbjct: 324 CAGG-KEGVDSCRGDSGGPLIGLDTNKVNTYYFLAGVVSFGPTPCGLAGWPGVYTLVGKY 382

Query: 347 IQWIADNI 354
           + WI + I
Sbjct: 383 VDWIQNTI 390

Component of the extracellular signaling pathway that establishes the dorsal-ventral pathway of the embryo. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q27081|CFB_TACTR Clotting factor B OS=Tachypleus tridentatus PE=1 SV=1

 Score =  175 bits (443), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 175/387 (45%), Gaps = 72/387 (18%)

Query: 6   DDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSH---CGLEGRL-PKVC 61
           +D+ C+      G+C S+  C             P  +  +K+S    C   GR  P VC
Sbjct: 33  NDNECTARGGLKGSCKSLIDC-------------PSVLATLKDSFPVVCSWNGRFQPIVC 79

Query: 62  CPQHTLTNDQPTTTTRRPNNRNGAFTKLPSPDNNECG----------------------- 98
           CP        P  TT      +    KLP    + CG                       
Sbjct: 80  CPDAIA---PPPVTTTAVTVISTKEPKLPRLHISGCGKRKVKIDITTVGRSGSPILPPIS 136

Query: 99  --VNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAA 156
              N+      I GG  ++ G WPWMAA+  K       G   + C G++I+ +Y+L+AA
Sbjct: 137 TPQNSTGGRGIIAGGVEAKIGAWPWMAAVFVK-----NFGIGRFHCAGSIISNKYILSAA 191

Query: 157 HC-------VSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIA 209
           H        ++P          V VG   ++    G    ++  IIH  Y      NDIA
Sbjct: 192 HAFLIGGRKLTPTRLA------VRVGGHYIK---RGQEYPVKDVIIHPHYVEKENYNDIA 242

Query: 210 LFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISV 269
           +  L+E+   +DL+ PICLP D    ++  + +    AGWG   F GP S  LR V I V
Sbjct: 243 IIELKEELNFTDLVNPICLP-DPETVTDPLKDRIVTAAGWGDLDFSGPRSQVLREVSIPV 301

Query: 270 VDNPKCRQIFSNYGAT-----INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGV 324
           V   KC Q +           I  N LCAG+  GGKD+C GDSGGPLM   +T++ ++GV
Sbjct: 302 VPVDKCDQAYEKLNTPSLKNGITNNFLCAGLEEGGKDACQGDSGGPLMLVNNTRWIVVGV 361

Query: 325 VSYGKKCAEVGFPGVYTRVTNYIQWIA 351
           VS+G KCAE G+PGVY+RV +Y+ WIA
Sbjct: 362 VSFGHKCAEEGYPGVYSRVASYLDWIA 388

This enzyme is closely associated with an endotoxin-sensitive hemolymph coagulation system which may play important roles in both hemostasis and host defense mechanisms. Its active form catalyzes the activation of proclotting enzyme. Does not activate the mammalian coagulation factors factor IX, factor X, prothrombin, plasminogen, protein C or prekallikrein. Does not hydrolyze fibrinogen. Does not catalyze the activation of factor C or coagulogen.

Tachypleus tridentatus (taxid: 6853)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 5

>sp|P05049|SNAK_DROME Serine protease snake OS=Drosophila melanogaster GN=snk PE=1 SV=2

 Score =  172 bits (436), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/348 (35%), Positives = 174/348 (50%), Gaps = 37/348 (10%)

Query: 18  GTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCP---QHTLTNDQPTT 74
           G CI   QC +   ++   R     V   +   C     +P +CCP   +H L      T
Sbjct: 102 GYCILAYQCLH---VIREYR-----VHGTRIDICTHRNNVPVICCPLADKHVLAQRISAT 153

Query: 75  TTRRPNNRNGAFTKLPSPDNNEC--GVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRR 132
              +    N A  +L   D      G     S   IVGGTP+  G +P MAA+G+     
Sbjct: 154 ---KCQEYNAAARRLHLTDTGRTFSGKQCVPSVPLIVGGTPTRHGLFPHMAALGWTQGSG 210

Query: 133 RANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS-IEIE 191
             +   +W CGGAL+++ YVLTAAHC    T+G   P +V +G+  L +TS+    I+I 
Sbjct: 211 SKDQDIKWGCGGALVSELYVLTAAHCA---TSGSKPPDMVRLGARQLNETSATQQDIKIL 267

Query: 192 RPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFV--AGW 249
             ++H +Y S+   +DIAL +L      S+ ++P CL        +L E + P V  AGW
Sbjct: 268 IIVLHPKYRSSAYYHDIALLKLTRRVKFSEQVRPACL-------WQLPELQIPTVVAAGW 320

Query: 250 GSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT---INENILCAGVLSGGKDSCGGD 306
           G T F G  S  LR V + VV    C+QI+         I E   CAG L GG+D+C GD
Sbjct: 321 GRTEFLGAKSNALRQVDLDVVPQMTCKQIYRKERRLPRGIIEGQFCAGYLPGGRDTCQGD 380

Query: 307 SGGPLMYPLDTKY----YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 350
           SGGP+ + L  +Y    +++G+ S+GK CA    PGVYTR+ +Y+ WI
Sbjct: 381 SGGPI-HALLPEYNCVAFVVGITSFGKFCAAPNAPGVYTRLYSYLDWI 427

Component of the extracellular signaling pathway that establishes the dorsal-ventral pathway of the embryo. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8K1T0|TMPS3_MOUSE Transmembrane protease serine 3 OS=Mus musculus GN=Tmprss3 PE=1 SV=2

 Score =  172 bits (435), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 152/293 (51%), Gaps = 22/293 (7%)

Query: 65  HTLTNDQPTTTTRRPNNRNGAFT-KLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMA 123
           H L++D+ T        R G  +  + +   + CG      S RIVGG  S   QWPW  
Sbjct: 174 HLLSDDKVTALHHSVYMREGCTSGHVVTLKCSACGTRT-GYSPRIVGGNMSSLTQWPWQV 232

Query: 124 AIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEP--YIVHVGSIDLED 181
           ++ F+            +CGG++IT  +++TAAHCV       Y P  + V VG + L D
Sbjct: 233 SLQFQGYH---------LCGGSIITPLWIVTAAHCV----YDLYHPKSWTVQVGLVSLMD 279

Query: 182 TSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFER 241
           +     + +E+ I H +Y   R  NDIAL +L E     + IQPICLP   N      + 
Sbjct: 280 SPVPSHL-VEKIIYHSKYKPKRLGNDIALMKLSEPLTFDETIQPICLP---NSEENFPDG 335

Query: 242 KTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKD 301
           K  + +GWG+T   G  SP L H  + ++ N  C      YG  I+ ++LCAG L GG D
Sbjct: 336 KLCWTSGWGATEDGGDASPVLNHAAVPLISNKICNH-RDVYGGIISPSMLCAGYLKGGVD 394

Query: 302 SCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
           SC GDSGGPL+      + ++G  S+G  CAEV  PGVYTR+T+++ WI + +
Sbjct: 395 SCQGDSGGPLVCQERRLWKLVGATSFGIGCAEVNKPGVYTRITSFLDWIHEQL 447

Probable serine protease that play a role in hearing. Acts as a permissive factor for cochlear hair cells survival and activation at the onset of hearing and is required for saccular hair cell survival. Activates ENaC (in vitro).

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P57727|TMPS3_HUMAN Transmembrane protease serine 3 OS=Homo sapiens GN=TMPRSS3 PE=1 SV=2

 Score =  164 bits (416), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 105/297 (35%), Positives = 155/297 (52%), Gaps = 29/297 (9%)

Query: 65  HTLTNDQPTTTTRRPNNRNG-AFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMA 123
           H L +D+ T        R G A   + +     CG +    S RIVGG  S   QWPW A
Sbjct: 174 HLLPDDKVTALHHSVYVREGCASGHVVTLQCTACG-HRRGYSSRIVGGNMSLLSQWPWQA 232

Query: 124 AIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYI-----VHVGSID 178
           ++ F+            +CGG++IT  +++TAAHCV       Y+ Y+     + VG + 
Sbjct: 233 SLQFQGYH---------LCGGSVITPLWIITAAHCV-------YDLYLPKSWTIQVGLVS 276

Query: 179 LEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSEL 238
           L D  +   + +E+ + H +Y   R  NDIAL +L      +++IQP+CLP   N     
Sbjct: 277 LLDNPAPSHL-VEKIVYHSKYKPKRLGNDIALMKLAGPLTFNEMIQPVCLP---NSEENF 332

Query: 239 FERKTPFVAGWGSTV-FRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS 297
            + K  + +GWG+T    G  SP L H  + ++ N  C      YG  I+ ++LCAG L+
Sbjct: 333 PDGKVCWTSGWGATEDGAGDASPVLNHAAVPLISNKICNH-RDVYGGIISPSMLCAGYLT 391

Query: 298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
           GG DSC GDSGGPL+      + ++G  S+G  CAEV  PGVYTRVT+++ WI + +
Sbjct: 392 GGVDSCQGDSGGPLVCQERRLWKLVGATSFGIGCAEVNKPGVYTRVTSFLDWIHEQM 448

Probable serine protease that play a role in hearing. Acts as a permissive factor for cochlear hair cells survival and activation at the onset of hearing and is required for saccular hair cell survival (By similarity). Activates ENaC (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P03952|KLKB1_HUMAN Plasma kallikrein OS=Homo sapiens GN=KLKB1 PE=1 SV=1

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/261 (34%), Positives = 148/261 (56%), Gaps = 17/261 (6%)

Query: 93  DNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYV 152
           DN+ C      +S RIVGGT S  G+WPW  ++  K+  +R       +CGG+LI  ++V
Sbjct: 379 DNSVCTTK---TSTRIVGGTNSSWGEWPWQVSLQVKLTAQRH------LCGGSLIGHQWV 429

Query: 153 LTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALF 211
           LTAAHC   D     + + ++ G ++L D +      +I+  IIH+ Y  +   +DIAL 
Sbjct: 430 LTAAHCF--DGLPLQDVWRIYSGILNLSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALI 487

Query: 212 RLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVD 271
           +L+     ++  +PICLP   +  S ++     +V GWG +  +G +   L+ V I +V 
Sbjct: 488 KLQAPLNYTEFQKPICLPSKGD-TSTIYTN--CWVTGWGFSKEKGEIQNILQKVNIPLVT 544

Query: 272 NPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKC 331
           N +C++ + +Y   I + ++CAG   GGKD+C GDSGGPL+   +  + ++G+ S+G+ C
Sbjct: 545 NEECQKRYQDY--KITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGC 602

Query: 332 AEVGFPGVYTRVTNYIQWIAD 352
           A    PGVYT+V  Y+ WI +
Sbjct: 603 ARREQPGVYTKVAEYMDWILE 623

The enzyme cleaves Lys-Arg and Arg-Ser bonds. It activates, in a reciprocal reaction, factor XII after its binding to a negatively charged surface. It also releases bradykinin from HMW kininogen and may also play a role in the renin-angiotensin system by converting prorenin into renin.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 3

EC: 4

>sp|O60235|TM11D_HUMAN Transmembrane protease serine 11D OS=Homo sapiens GN=TMPRSS11D PE=1 SV=1

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/260 (36%), Positives = 133/260 (51%), Gaps = 22/260 (8%)

Query: 95  NECGVN---AFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRY 151
           NECG        S +RI+GGT +E G WPW  ++       R N      CGG+LI   +
Sbjct: 171 NECGAGPDLITLSEQRILGGTEAEEGSWPWQVSL-------RLNNAHH--CGGSLINNMW 221

Query: 152 VLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALF 211
           +LTAAHC   ++      +I   G   +  T   + + +   +IH  Y SA   NDIAL 
Sbjct: 222 ILTAAHCFRSNSNPR--DWIATSG---ISTTFPKLRMRVRNILIHNNYKSATHENDIALV 276

Query: 212 RLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVD 271
           RL      +  I  +CLP  T     +    T +V GWG+  + G   P+LR  Q+ ++ 
Sbjct: 277 RLENSVTFTKDIHSVCLPAATQ---NIPPGSTAYVTGWGAQEYAGHTVPELRQGQVRIIS 333

Query: 272 NPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTK-YYIIGVVSYGKK 330
           N  C    S Y   I   +LCAGV  GG D+C GDSGGPL+     + ++I+G+VS+G +
Sbjct: 334 NDVCNAPHS-YNGAILSGMLCAGVPQGGVDACQGDSGGPLVQEDSRRLWFIVGIVSWGDQ 392

Query: 331 CAEVGFPGVYTRVTNYIQWI 350
           C     PGVYTRVT Y+ WI
Sbjct: 393 CGLPDKPGVYTRVTAYLDWI 412

May play some biological role in the host defense system on the mucous membrane independently of or in cooperation with other substances in airway mucous or bronchial secretions.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8IU80|TMPS6_HUMAN Transmembrane protease serine 6 OS=Homo sapiens GN=TMPRSS6 PE=1 SV=3

 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 143/281 (50%), Gaps = 26/281 (9%)

Query: 78  RPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGK 137
           RP+ R+G+       D   C       S RIVGG  S  G+WPW A++  ++R R     
Sbjct: 554 RPDCRDGS-------DEEHCDCGLQGPSSRIVGGAVSSEGEWPWQASL--QVRGRH---- 600

Query: 138 PEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSG-VSIEIERPIIH 196
              +CGGALI  R+V+TAAHC   D+      + V +G +       G VS ++ R ++H
Sbjct: 601 ---ICGGALIADRWVITAAHCFQEDSMASTVLWTVFLGKVWQNSRWPGEVSFKVSRLLLH 657

Query: 197 EQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFR 255
             +       D+AL +L      S  ++P+CLP     RS  FE     ++ GWG+    
Sbjct: 658 PYHEEDSHDYDVALLQLDHPVVRSAAVRPVCLP----ARSHFFEPGLHCWITGWGALREG 713

Query: 256 GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM-YP 314
           GP+S  L+ V + ++    C ++   Y   +   +LCAG   G KD+C GDSGGPL+   
Sbjct: 714 GPISNALQKVDVQLIPQDLCSEV---YRYQVTPRMLCAGYRKGKKDACQGDSGGPLVCKA 770

Query: 315 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           L  ++++ G+VS+G  C    + GVYTR+T  I WI   ++
Sbjct: 771 LSGRWFLAGLVSWGLGCGRPNYFGVYTRITGVISWIQQVVT 811

Serine protease which hydrolyzes a range of proteins including type I collagen, fibronectin and fibrinogen. Can also activate urokinase-type plasminogen activator with low efficiency. May play a specialized role in matrix remodeling processes in liver. Required to sense iron deficiency. Overexpression suppresses activation of the HAMP promoter.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
193575579	393	PREDICTED: proclotting enzyme-like isofo	0.974	0.880	0.441	1e-84
112982842	390	clip domain serine protease 4 precursor	0.960	0.874	0.435	2e-76
380011179	354	PREDICTED: LOW QUALITY PROTEIN: venom pr	0.929	0.932	0.432	5e-75
66507455	353	PREDICTED: venom protease [Apis mellifer	0.926	0.932	0.423	2e-74
194400538	383	serine proteinase [Rhodnius prolixus]	0.938	0.869	0.418	2e-73
56418413	605	hemolymph proteinase 17 [Manduca sexta]	0.935	0.548	0.416	9e-73
56418415	394	hemolymph proteinase 17 short form [Mand	0.935	0.842	0.416	1e-72
350417089	359	PREDICTED: venom protease-like [Bombus i	0.907	0.896	0.437	3e-71
325071349	358	venom serine protease [Bombus terrestris	0.892	0.885	0.432	4e-71
344974714	358	venom serine protease [Bombus hypocrita	0.892	0.885	0.432	5e-71

>gi|193575579|ref|XP_001951870.1| PREDICTED: proclotting enzyme-like isoform 1 [Acyrthosiphon pisum] gi|328709820|ref|XP_003244077.1| PREDICTED: proclotting enzyme-like isoform 2 [Acyrthosiphon pisum] gi|328709822|ref|XP_003244078.1| PREDICTED: proclotting enzyme-like isoform 3 [Acyrthosiphon pisum]

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 161/365 (44%), Positives = 234/365 (64%), Gaps = 19/365 (5%)

Query: 6   DDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCP-- 63
           +++ C TP +  G CI+I++C  L  +L N+R+N     +++NS CG EG+ PKVCCP  
Sbjct: 31  NNNECFTPNDLNGNCINIKRCPTLRYLLQNQRHNASIATFLRNSMCGYEGKDPKVCCPLE 90

Query: 64  -QHTLTNDQPTT----TTRRPNNRNGAF----TKLPSPDNNECGVNAFNSSKRIVGGTPS 114
            + T TN    T    TT +P++   A     + +  P    CG  + ++  RIVGG P+
Sbjct: 91  NEPTTTNYATETSQRITTPKPDSTGSAIYETVSSIKLPSQKTCG-RSNSTHVRIVGGNPA 149

Query: 115 ERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHV 174
           E G WPWMAA+G++    R   + +W+CGGALI++RYVLTAAHC      G  +  + H+
Sbjct: 150 ELGAWPWMAALGYQ-DLNRPTTEYQWLCGGALISERYVLTAAHCTV--GIGNRKLAVAHL 206

Query: 175 GSIDLE----DTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPY 230
           G ++L+    D S  + + I R I HE+Y +     DIAL +L      +  IQPICLP 
Sbjct: 207 GDLNLDPKVNDGSGPIDVAISRIITHERYNAQEYTTDIALLKLENSVRFNQFIQPICLPI 266

Query: 231 DTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENI 290
            ++ R+    +  PFVAGWGST FRGP S  L  VQ+ V+DN +C++ F+N  + I++ +
Sbjct: 267 LSHHRANKLVKSVPFVAGWGSTSFRGPSSTHLMEVQVPVMDNSECKRAFANKKSVIDDRV 326

Query: 291 LCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 350
           LCAG+L+GGKD+C GDSGGPLM+P  ++YY++GVVSYG KCAE G+PGVYTRV ++++WI
Sbjct: 327 LCAGILTGGKDACQGDSGGPLMWPSGSQYYLVGVVSYGFKCAEPGYPGVYTRVASFVEWI 386

Query: 351 ADNIS 355
           ADN++
Sbjct: 387 ADNMN 391

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112982842|ref|NP_001036891.1| clip domain serine protease 4 precursor [Bombyx mori] gi|20372973|dbj|BAB91156.1| serine protease [Bombyx mori]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 220/372 (59%), Gaps = 31/372 (8%)

Query: 7   DSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHT 66
           D  C T  NE+G+C+++ QC+    I+   + NP A   ++ +HCG EG  PKVCCP   
Sbjct: 22  DEPCQTVENEVGSCLNLLQCKPYLKIVKEFKTNPAAAVLLRKAHCGFEGSNPKVCCPLPG 81

Query: 67  LTNDQP---------TTTTRRPNNRNGAFTKLPS-----PDNNECGVNAFNSSKRIVGGT 112
                P         TTTT+ P     A + +       P+   CGV+  + S R+VGG 
Sbjct: 82  FPTVPPDTTTTTTTTTTTTQAPAPTQSAKSAIEDLVPAFPEPPYCGVSNASFS-RVVGGV 140

Query: 113 PSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIV 172
            ++ G +PWM  +G+K RR    G   W+CGG+LIT R+VLTAAHC+      + + Y+V
Sbjct: 141 SAKLGDFPWMVNLGYKPRR---GGGVRWLCGGSLITSRHVLTAAHCMH---NHDDDLYLV 194

Query: 173 HVGSIDLEDTSSG---VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLP 229
            VG +DL     G   V + I+  I HEQY +A   NDI +  L +D P++DLI+PIC+P
Sbjct: 195 RVGELDLARDDEGATPVDVLIKTKIKHEQYDAASYTNDIGILVLEKDVPITDLIKPICIP 254

Query: 230 YDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY-GATINE 288
            DT LRS  FE   P +AGWG T FRGP +  L+ +Q+ VV N  C Q +S Y    I+E
Sbjct: 255 KDTELRSRSFEDYNPIIAGWGDTEFRGPSATHLQVLQLPVVSNDFCAQAYSPYKNQKIDE 314

Query: 289 NILCAGVLSGGKDSCGGDSGGPLMYPL------DTKYYIIGVVSYGKKCAEVGFPGVYTR 342
            +LCAG   GGKD+C GDSGGPLM P+       T +Y IGVVS+GKKCAE GFPGVY+R
Sbjct: 315 RVLCAGYKKGGKDACQGDSGGPLMQPIWNSQTYKTYFYQIGVVSFGKKCAEAGFPGVYSR 374

Query: 343 VTNYIQWIADNI 354
           VT+++ WI + +
Sbjct: 375 VTHFVPWIQEKV 386

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011179|ref|XP_003689688.1| PREDICTED: LOW QUALITY PROTEIN: venom protease-like [Apis florea]

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 153/354 (43%), Positives = 210/354 (59%), Gaps = 24/354 (6%)

Query: 1   MHTYYDDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKV 60
           +H  Y    C+TP  E G CI+IR C++L  +L  E+   +   Y+K S C  E   P V
Sbjct: 16  IHVVYAQDQCTTPNQEAGVCINIRSCQFLMTLL--EKEGLKVRNYLKQSLCRYENNDPFV 73

Query: 61  CCPQHTLTNDQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWP 120
           CCP    + + P   ++    +   +  L  P   +CG N   S  R+VGG P++ G WP
Sbjct: 74  CCP----SKENPGRESKIV--KENLYGPLLPP---QCGFNNI-SHTRVVGGIPAKPGAWP 123

Query: 121 WMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL- 179
           W+AA+GF   R     +P+W+CGG+LI+ R+VLTAAHC   +       Y+V +G +DL 
Sbjct: 124 WLAALGF---RSSNPSQPKWLCGGSLISARHVLTAAHCAIHNNL-----YLVRIGDLDLS 175

Query: 180 --EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSE 237
             +D +  + +EIE  +IH  Y +   +NDIA+ RL +D   ++ + PICLP + NLR+ 
Sbjct: 176 RDDDGAHPIQVEIEDKLIHPDYNTETFVNDIAVLRLAQDIQFTEYVYPICLPVEDNLRNN 235

Query: 238 LFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG-ATINENILCAGVL 296
            F R  PFVAGWGST  RGP S  L  VQ+ V+ N +C+Q +  +  A I+  +LCA   
Sbjct: 236 AFNRNYPFVAGWGSTETRGPASNILLEVQLPVISNEQCKQAYXQFKTAEIDNRVLCAAYR 295

Query: 297 SGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 350
            GGKD+C GDSGGPLM P    YY IGVVSYG KCAE GFPGVYTRVT ++ +I
Sbjct: 296 QGGKDACQGDSGGPLMLPQHRFYYQIGVVSYGYKCAEPGFPGVYTRVTTFLDFI 349

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66507455|ref|XP_623069.1| PREDICTED: venom protease [Apis mellifera]

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 150/354 (42%), Positives = 210/354 (59%), Gaps = 25/354 (7%)

Query: 1   MHTYYDDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKV 60
           +H  Y    C+TP  E G CI++R C++L  +L  E+   +   Y+K S C  E   P V
Sbjct: 16  IHVVYAQDQCTTPNQEEGVCINLRSCQFLITLL--EKEGLKVKNYLKQSLCRYENNDPFV 73

Query: 61  CCPQHTLTNDQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWP 120
           CCP+++    +          R  ++  L  P   +CG N   S  R+VGG P++ G WP
Sbjct: 74  CCPKNSGRESKI--------ERENSYGPLLPP---QCGFNNI-SHTRVVGGIPAKLGAWP 121

Query: 121 WMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL- 179
           W+  +GF  R      +P W+CGG+LI+ R+VLTAAHC         + Y+V +G +DL 
Sbjct: 122 WLTVLGF--RSSLNPSQPRWLCGGSLISARHVLTAAHCAV-----RKDLYVVRIGDLDLS 174

Query: 180 --EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSE 237
             +D +  + +EIE  +IH  Y++   +NDIA+ RL +D   ++ + PICLP + NLR+ 
Sbjct: 175 RDDDGAHPIQVEIEDKLIHPDYSTTTFVNDIAVLRLAQDVQFTEYVYPICLPVEDNLRNN 234

Query: 238 LFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY-GATINENILCAGVL 296
            F R  PFVAGWGST  RGP S  L  +Q+ V++N +C+Q +S +  A I+  +LCA   
Sbjct: 235 NFVRNYPFVAGWGSTETRGPASDILLEIQLPVINNEQCKQAYSKFKAAEIDNRVLCAAYR 294

Query: 297 SGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 350
            GGKD+C GDSGGPLM P    YY IGVVSYG KCAE GFPGVYTRVT ++ +I
Sbjct: 295 QGGKDACQGDSGGPLMLPQHWYYYQIGVVSYGYKCAEPGFPGVYTRVTAFLDFI 348

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194400538|gb|ACF70480.1| serine proteinase [Rhodnius prolixus]

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/358 (41%), Positives = 212/358 (59%), Gaps = 25/358 (6%)

Query: 3   TYYDDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCC 62
           ++   S C+T   + G CI++RQC  L D+L N R+ P    Y+K + CG +   P VCC
Sbjct: 29  SFESSSSCTTLEGDNGRCINVRQCPPLLDLLRNSRHKPGVADYLKKTVCGYDRNDPLVCC 88

Query: 63  PQH------TLTNDQPTTTTRRP--NNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPS 114
           P           + + TT    P  +NR+     LPSP   +CG ++     RIVGG PS
Sbjct: 89  PNQPDFQPSIFGSGRRTTEGTSPLIDNRD----TLPSPP--QCGKSSVQKI-RIVGGQPS 141

Query: 115 ERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHV 174
           + G WPW+A +G++  R   N   +W+CGGAL+T R+++TAAHC    +   ++   V +
Sbjct: 142 DLGAWPWLAVLGYRSNR---NPTTQWLCGGALVTSRHIVTAAHCTRHPSLSLFK---VRL 195

Query: 175 GSIDLE----DTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPY 230
           G +DL+    D ++ + + IER I+H  Y   +  +DIA+ +L+ + P S  IQPICLP 
Sbjct: 196 GELDLDNNVNDGANPIDVNIERTIVHPSYNPQKYTDDIAVLKLQNEVPFSRNIQPICLPT 255

Query: 231 DTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENI 290
            + LR     +K PFVAGWGS  F+GP    L+ VQ+ VV+N +CR+ +   GA I    
Sbjct: 256 TSELREMSLTKKFPFVAGWGSVQFKGPSLTALQEVQVPVVENEECRRAYKAKGADIISRQ 315

Query: 291 LCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQ 348
           LCAG   GGKD+C GDSGGPLM P    YY+IGVVSYG +CAE GFPG+Y+RVT+  +
Sbjct: 316 LCAGFALGGKDACQGDSGGPLMLPHAGSYYLIGVVSYGFRCAEAGFPGIYSRVTSLFK 373

Source: Rhodnius prolixus

Species: Rhodnius prolixus

Genus: Rhodnius

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56418413|gb|AAV91014.1| hemolymph proteinase 17 [Manduca sexta]

 Score =  280 bits (715), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 158/379 (41%), Positives = 221/379 (58%), Gaps = 47/379 (12%)

Query: 10  CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTN 69
           C T  NE G+CI+++QC     ++   ++NP AVQ ++ +HCG EG  PKVCCP+  +  
Sbjct: 236 CQTVENEPGSCINLKQCAPYLKLVTEHKSNPGAVQLLRRAHCGFEGNDPKVCCPRPGIPT 295

Query: 70  DQPTTTTRR------------------------PNNRNGAFTKLPSPDNNECGVNAFNSS 105
             P TTT                          P +    F     PD   CG+++  S 
Sbjct: 296 AAPQTTTTTTTTPAITTTTTPNPPAQPAGKSIGPEDFVAEF-----PDPPVCGLSS-ASF 349

Query: 106 KRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTG 165
            R+VGG  ++ G +PWMA +G+   R+R N   +W+CGG+LI+ ++VLTA+HC+    T 
Sbjct: 350 SRVVGGVDAKLGDFPWMALLGY---RKRTNPT-QWLCGGSLISSKHVLTASHCIH---TK 402

Query: 166 EYEPYIVHVGSIDL---EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
           E E YIV +G +DL   +D ++ + I I+  I HEQY      NDI +  L ++   SDL
Sbjct: 403 EQELYIVRLGELDLVRDDDGAAPIDIFIKHMIKHEQYNPKAYTNDIGILVLEKEVEFSDL 462

Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY 282
           I+PICLP  + LRS  FE   P VAGWG+   RGP +  L+ VQ+ VV N  C+Q + NY
Sbjct: 463 IRPICLPKTSELRSMTFEDYNPMVAGWGNLEARGPAATHLQVVQLPVVSNDYCKQAYRNY 522

Query: 283 -GATINENILCAGVLSGGKDSCGGDSGGPLMYPL------DTKYYIIGVVSYGKKCAEVG 335
               I+E +LCAG  +GGKDSC GDSGGPLM P+       T ++ IGVVS+GK CAE G
Sbjct: 523 TQQKIDERVLCAGYKNGGKDSCRGDSGGPLMQPIWNSQSYKTYFFQIGVVSFGKGCAEAG 582

Query: 336 FPGVYTRVTNYIQWIADNI 354
           FPGVY+RVTN++ W+ + +
Sbjct: 583 FPGVYSRVTNFMPWLQEKV 601

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56418415|gb|AAV91015.1| hemolymph proteinase 17 short form [Manduca sexta]

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 158/379 (41%), Positives = 222/379 (58%), Gaps = 47/379 (12%)

Query: 10  CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTN 69
           C T  NE G+CI+++QC     ++   ++NP AVQ ++ +HCG EG  PKVCCP+  +  
Sbjct: 25  CQTVENEPGSCINLKQCAPYLKLVTEHKSNPGAVQLLRRAHCGFEGNDPKVCCPRPGIPT 84

Query: 70  DQPTTTTRR------------------------PNNRNGAFTKLPSPDNNECGVNAFNSS 105
             P TTT                          P +    F     PD   CG+++ + S
Sbjct: 85  AAPQTTTTTTTTPAITTTTTPNPPAQPAGKSIGPEDFVAEF-----PDPPVCGLSSASFS 139

Query: 106 KRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTG 165
            R+VGG  ++ G +PWMA +G+   R+R N   +W+CGG+LI+ ++VLTA+HC+    T 
Sbjct: 140 -RVVGGVDAKLGDFPWMALLGY---RKRTN-PTQWLCGGSLISSKHVLTASHCIH---TK 191

Query: 166 EYEPYIVHVGSIDL---EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
           E E YIV +G +DL   +D ++ + I I+  I HEQY      NDI +  L ++   SDL
Sbjct: 192 EQELYIVRLGELDLVRDDDGAAPIDIFIKHMIKHEQYNPKAYTNDIGILVLEKEVEFSDL 251

Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY 282
           I+PICLP  + LRS  FE   P VAGWG+   RGP +  L+ VQ+ VV N  C+Q + NY
Sbjct: 252 IRPICLPKTSELRSMTFEDYNPMVAGWGNLEARGPAATHLQVVQLPVVSNDYCKQAYRNY 311

Query: 283 -GATINENILCAGVLSGGKDSCGGDSGGPLMYPL------DTKYYIIGVVSYGKKCAEVG 335
               I+E +LCAG  +GGKDSC GDSGGPLM P+       T ++ IGVVS+GK CAE G
Sbjct: 312 TQQKIDERVLCAGYKNGGKDSCRGDSGGPLMQPIWNSQSYKTYFFQIGVVSFGKGCAEAG 371

Query: 336 FPGVYTRVTNYIQWIADNI 354
           FPGVY+RVTN++ W+ + +
Sbjct: 372 FPGVYSRVTNFMPWLQEKV 390

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417089|ref|XP_003491251.1| PREDICTED: venom protease-like [Bombus impatiens]

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 151/345 (43%), Positives = 201/345 (58%), Gaps = 23/345 (6%)

Query: 10  CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTN 69
           C+TP N+ G C+ IR C+ L ++L  +     AV +++ S C  E   P VCCP      
Sbjct: 29  CTTPNNQTGKCLGIRVCKPLLEMLQTQGQ--AAVDFLRRSVCKYENNNPIVCCPNEQSRE 86

Query: 70  DQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKI 129
           D       R       +  L  P   +CG +   S  R+VGG P+E G WPW+AA+GF  
Sbjct: 87  D-------RGILEENEYGPLRPP---QCGFSNI-SHTRVVGGKPAELGAWPWIAALGFHY 135

Query: 130 RRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL---EDTSSGV 186
            R     +P W CGG+LI+ R+VLTAAHC   +     E Y+V +G ++L   +D +  V
Sbjct: 136 PRNPVL-EPLWKCGGSLISSRHVLTAAHCAEIN-----ELYVVRIGDLNLVRNDDGAHPV 189

Query: 187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFV 246
            IEIE  IIH  Y S    +DIA+ +L E    S+ + PICLP + NLR+  FER  PFV
Sbjct: 190 QIEIESKIIHPDYISGVTKHDIAILKLVEQVQFSEYVYPICLPVEDNLRNNNFERYYPFV 249

Query: 247 AGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG-ATINENILCAGVLSGGKDSCGG 305
           AGWGS    GP S  L  VQ+ VV N +C+  ++ +  A + +N+LCAG   GGKD+C G
Sbjct: 250 AGWGSVGHHGPGSDDLMEVQVPVVSNTECKNSYARFATAHVTDNVLCAGYTQGGKDACQG 309

Query: 306 DSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 350
           DSGGPLM P    +Y IGVVSYG KCA  G+PGVYTRVT+Y+ +I
Sbjct: 310 DSGGPLMLPKKFTFYQIGVVSYGFKCAAAGYPGVYTRVTSYLDFI 354

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325071349|gb|ADY75779.1| venom serine protease [Bombus terrestris]

 Score =  274 bits (701), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 148/342 (43%), Positives = 200/342 (58%), Gaps = 25/342 (7%)

Query: 10  CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTN 69
           C+TP N+ G C+ IR C+ L ++L  + +   A  +++ S C  E   P VCCP      
Sbjct: 29  CTTPDNKAGKCLGIRGCKPLLEMLQTQGH--AAADFLRQSVCKYENNNPIVCCPNEESRE 86

Query: 70  DQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKI 129
           D+       P         L  P    CG +   S  R+VGG P+  G WPW+AA+GF+ 
Sbjct: 87  DRGILVEYEP---------LRPP---HCGFSNV-SHTRVVGGNPAVLGAWPWIAALGFRY 133

Query: 130 RRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL---EDTSSGV 186
            R  A  +P W CGG+LI+ R+VLTAAHC   +     E Y+V +G ++L   +D +  V
Sbjct: 134 PRNPAL-EPLWKCGGSLISSRHVLTAAHCAEIN-----ELYVVRIGDLNLVRNDDGAHPV 187

Query: 187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFV 246
            IEIE  IIH  Y S    +DIA+ +L E+ P S+ + PICLP + NLR+  FER  PFV
Sbjct: 188 QIEIESKIIHPDYISGVTKHDIAILKLVEEVPFSEYVYPICLPVEDNLRNNNFERYYPFV 247

Query: 247 AGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT-INENILCAGVLSGGKDSCGG 305
           AGWGS    GP S  L  VQ+ V+ N +C+  ++ + A  + + +LCAG   GGKD+C G
Sbjct: 248 AGWGSLAHHGPGSDDLMEVQVPVISNTECKNSYARFAAAHVTDTVLCAGYTQGGKDACQG 307

Query: 306 DSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
           DSGGPLM P    +Y IGVVSYG KCA  G+PGVYTRVT+Y+
Sbjct: 308 DSGGPLMLPKKFTFYQIGVVSYGHKCAAAGYPGVYTRVTSYL 349

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|344974714|gb|AEN41590.1| venom serine protease [Bombus hypocrita sapporensis] gi|344974716|gb|AEN41591.1| venom serine protease [Bombus hypocrita sapporensis]

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 148/342 (43%), Positives = 199/342 (58%), Gaps = 25/342 (7%)

Query: 10  CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTN 69
           C+TP N+ G C+ IR C+ L ++L  + +   A  +++ S C  E   P VCCP      
Sbjct: 29  CTTPNNKAGKCLGIRVCKPLLEMLQTQGH--AAADFLRQSVCKYENNNPIVCCPNEESRE 86

Query: 70  DQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKI 129
           D+       P         L  P    CG +   S  R+VGG P+  G WPW+AA+GF+ 
Sbjct: 87  DRGILVEYEP---------LRPP---HCGFSNV-SHTRVVGGNPAVLGAWPWIAALGFRY 133

Query: 130 RRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL---EDTSSGV 186
            R  A  +P W CGG+LI+ R+VLTAAHC   +     E Y+V +G ++L   +D +  V
Sbjct: 134 PRNLAL-EPLWKCGGSLISSRHVLTAAHCAEIN-----ELYVVRIGDLNLVRNDDGAHPV 187

Query: 187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFV 246
            IEIE  IIH  Y S    +DIA+ +L E+ P S+ + PICLP + NLR+  FER  PFV
Sbjct: 188 QIEIESKIIHPDYISGVTKHDIAILKLVEEVPFSEYVYPICLPVEDNLRNNNFERYYPFV 247

Query: 247 AGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT-INENILCAGVLSGGKDSCGG 305
           AGWGS    GP S  L  VQ+ V+ N +C+  ++ + A  + + +LCAG   GGKD+C G
Sbjct: 248 AGWGSLAHHGPGSDDLMEVQVPVISNTECKNSYARFAAAHVTDTVLCAGYTQGGKDACQG 307

Query: 306 DSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
           DSGGPLM P    +Y IGVVSYG KCA  G+PGVYTRVT Y+
Sbjct: 308 DSGGPLMLPKKFTFYQIGVVSYGHKCAAAGYPGVYTRVTPYL 349

Source: Bombus hypocrita sapporensis

Species: Bombus hypocrita

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	355
FB|FBgn0052260	575	CG32260 [Drosophila melanogast	0.718	0.443	0.357	7.6e-46
FB|FBgn0035501	546	CG1299 [Drosophila melanogaste	0.940	0.611	0.320	9.1e-45
FB|FBgn0038727	721	CG7432 [Drosophila melanogaste	0.709	0.349	0.363	5.1e-42
FB|FBgn0036891	408	CG9372 [Drosophila melanogaste	0.684	0.595	0.323	1.5e-41
FB|FBgn0039759	418	CG9733 [Drosophila melanogaste	0.721	0.612	0.339	1.7e-40
FB|FBgn0037515	391	Sp7 "Serine protease 7" [Droso	0.926	0.841	0.309	1.3e-36
UNIPROTKB|I3LD44	475	LOC100627826 "Uncharacterized	0.656	0.490	0.363	6.5e-35
FB|FBgn0051728	581	CG31728 [Drosophila melanogast	0.698	0.426	0.333	2.1e-34
MGI|MGI:2155445	453	Tmprss3 "transmembrane proteas	0.653	0.512	0.365	2.2e-34
FB|FBgn0003450	435	snk "snake" [Drosophila melano	0.881	0.719	0.315	2.8e-34

FB|FBgn0052260 CG32260 [Drosophila melanogaster (taxid:7227)]

 Score = 432 (157.1 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
 Identities = 100/280 (35%), Positives = 150/280 (53%)

Query:    90 PSPDNNE------CGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCG 143
             P P NN       CG++   S+ R+VGG  + +G +PW+AA+G+     R N   +++CG
Sbjct:   305 PPPPNNAPRESATCGISGATSN-RVVGGMEARKGAYPWIAALGYFEENNR-NAL-KFLCG 361

Query:   144 GALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL-EDTSSG-VSIEIERPIIHEQYTS 201
             G+LI  RYV+T+AHC++P  T      +V +G+ DL +   SG + + I R ++HE +  
Sbjct:   362 GSLIHSRYVITSAHCINPMLT------LVRLGAHDLSQPAESGAMDLRIRRTVVHEHFDL 415

Query:   202 ARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK 261
                 NDIAL  L     L   I PICLP       + F    PFVAGWG+   +G  S  
Sbjct:   416 NSISNDIALIELNVVGALPGNISPICLPEAAKFMQQDFVGMNPFVAGWGAVKHQGVTSQV 475

Query:   262 LRHVQISVVDNPKCRQIFSNYGATI--NENILCAGVLXXXXXXXXXXXXXPLMYP-LDT- 317
             LR  Q+ +V    C Q + +    +  ++ +LCAG               PLM P L+  
Sbjct:   476 LRDAQVPIVSRHSCEQSYKSIFQFVQFSDKVLCAG--SSSVDACQGDSGGPLMMPQLEGN 533

Query:   318 --KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               ++Y++G+VS+G +CA   FPGVYTRV +Y+ WI  +I+
Sbjct:   534 VYRFYLLGLVSFGYECARPNFPGVYTRVASYVPWIKKHIA 573

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

FB|FBgn0035501 CG1299 [Drosophila melanogaster (taxid:7227)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 115/359 (32%), Positives = 173/359 (48%)

Query:     8 SLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQ-HT 66
             ++C  P  + G C+ I++C  L + L +   +     +++ S+   + +  +VCCP    
Sbjct:   162 TVCRGPDTKPGNCVEIKECASLLNELRSRSQDATFANFLRASNAVCQNKGTQVCCPTGQG 221

Query:    67 LTNDQXXXXXXXXXXXXGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIG 126
             +TN                  +L + +   CG +     K+IVGG  S +G WPW+A +G
Sbjct:   222 ITNTTPAPSQIVPKNTDEIPRRLLNVEEG-CG-STVGYFKKIVGGEVSRKGAWPWIALLG 279

Query:   127 FKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLE-DTSSG 185
             +       +G P + CGG LIT R+VLTAAHC+  D         V +G  DL  DT +G
Sbjct:   280 YD----DPSGSP-FKCGGTLITARHVLTAAHCIRQDLQ------FVRLGEHDLSTDTETG 328

Query:   186 -VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTP 244
              V I I R + H  Y      +D+A+  L  +   +  I PICLP+  NLR + +    P
Sbjct:   329 HVDINIARYVSHPDYNRRNGRSDMAILYLERNVEFTSKIAPICLPHTANLRQKSYVGYMP 388

Query:   245 FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN----YGAT-INENILCAGVLXXX 299
             FVAGWG T+  G  +  L  +QI + DN  C Q ++     + A   ++ +LCAGVL   
Sbjct:   389 FVAGWGKTMEGGESAQVLNELQIPIYDNKVCVQSYAKEKRYFSADQFDKAVLCAGVLSGG 448

Query:   300 XXXXXXXXXXPLMYPL----DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
                       PLM P       ++Y+IGVVSYG  CA    PGVY+    ++ WI   +
Sbjct:   449 KDTCQGDSGGPLMLPEPYQGQLRFYLIGVVSYGIGCARPNVPGVYSSTQYFMDWIIQQV 507

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0038727 CG7432 [Drosophila melanogaster (taxid:7227)]

 Score = 420 (152.9 bits), Expect = 5.1e-42, Sum P(2) = 5.1e-42
 Identities = 97/267 (36%), Positives = 137/267 (51%)

Query:    93 DNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYV 152
             D +ECG   + S+ RIVGG  +  GQWPWMAAI F    +R     E+ CGG+LI  +Y+
Sbjct:   461 DPDECGQQEY-STGRIVGGVEAPNGQWPWMAAI-FLHGPKRT----EFWCGGSLIGTKYI 514

Query:   153 LTAAHCVSPDTTGEY--EPYIVHVGSIDLE---DTSSGVSIEIERPIIHEQYTSARKLND 207
             LTAAHC        +    + V +G IDL    + S  V+  ++    HE+++     ND
Sbjct:   515 LTAAHCTRDSRQKPFAARQFTVRLGDIDLSTDAEPSDPVTFAVKEVRTHERFSRIGFYND 574

Query:   208 IALFRLREDAPLSDLIQPICLPYDTNLR-SELFERKTPFVAGWGSTVFRGPLSPKLRHVQ 266
             IA+  L +    S  + P+CLP    +   E    +   V GWG+T + G  S   R  +
Sbjct:   575 IAILVLDKPVRKSKYVIPVCLPKGIRMPPKERLPGRRATVVGWGTTYYGGKESTSQRQAE 634

Query:   267 ISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVS 326
             + +  N  C +   +Y   INEN +CAG               PLM   D+ +  +GVVS
Sbjct:   635 LPIWRNEDCDR---SYFQPINENFICAGYSDGGVDACQGDSGGPLMMRYDSHWVQLGVVS 691

Query:   327 YGKKCAEVGFPGVYTRVTNYIQWIADN 353
             +G KC E G+PGVYTRVT Y+ WI D+
Sbjct:   692 FGNKCGEPGYPGVYTRVTEYLDWIRDH 718

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0036891 CG9372 [Drosophila melanogaster (taxid:7227)]

 Score = 340 (124.7 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 86/266 (32%), Positives = 123/266 (46%)

Query:    92 PDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRY 151
             P+   CG+ +     R+ GG P+E  +WPWMAA+          G P   CGG LIT R+
Sbjct:   159 PEQRGCGITS-RQFPRLTGGRPAEPDEWPWMAAL-------LQEGLPFVWCGGVLITDRH 210

Query:   152 VLTAAHCVSPDTTGEYEPYIVHVGSID---LEDTSSGVSIEIERPIIHEQYTSARKLNDI 208
             VLTAAHC+        E   V +G  +   L +T +     I   ++H  Y      NDI
Sbjct:   211 VLTAAHCIYKKNK---EDIFVRLGEYNTHMLNETRAR-DFRIANMVLHIDYNPQNYDNDI 266

Query:   209 ALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQIS 268
             A+ R+      +  I P+C+P   N   E +  +   V GWG+  F GP S  L  V + 
Sbjct:   267 AIVRIDRATIFNTYIWPVCMP-PVN---EDWSDRNAIVTGWGTQKFGGPHSNILMEVNLP 322

Query:   269 VVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI-IGVVSY 327
             V     CR  F  +   + +  +CAG               PL+  L  + ++ IG+VS+
Sbjct:   323 VWKQSDCRSSFVQH---VPDTAMCAGFPEGGQDSCQGDSGGPLLVQLPNQRWVTIGIVSW 379

Query:   328 GKKCAEVGFPGVYTRVTNYIQWIADN 353
             G  C + G PG+YTRV  Y+ WI  N
Sbjct:   380 GVGCGQRGRPGIYTRVDRYLDWILAN 405

GO:0008236 "serine-type peptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0048812 "neuron projection morphogenesis" evidence=IMP

FB|FBgn0039759 CG9733 [Drosophila melanogaster (taxid:7227)]

 Score = 339 (124.4 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 95/280 (33%), Positives = 136/280 (48%)

Query:    89 LPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALIT 148
             LP P +  CG        RI  G  ++  ++PWM  + +  RRR  NG     C G+LI 
Sbjct:   147 LPQPPS--CG--GVGIRNRIYDGQDTDVNEFPWMVLLEY--RRRSGNGLST-ACAGSLIN 199

Query:   149 KRYVLTAAHCVSPDTTGEYEPYI-VHVG------SIDLEDTSSGVSIEIER----PI-IH 196
             +RYVLTAAHC++     E    + V +G      ++D        S E++R     I +H
Sbjct:   200 RRYVLTAAHCLTGRIEREVGTLVSVRLGEHDTRTAVDCPPGGGSCSPEVQRLGFEEIRVH 259

Query:   197 EQYT--SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVF 254
             E+Y+  ++ +++DI L R+  +   SD IQPICLP    L S    ++   VAGWG T+ 
Sbjct:   260 ERYSEKASNQVHDIGLIRMERNVRYSDNIQPICLPSSVGLESRQSGQQFT-VAGWGRTLK 318

Query:   255 RGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYP 314
                 + K + V ++ VD  KCRQ FS     +    LCAG               PLM  
Sbjct:   319 MARSAVKQK-VTVNYVDPAKCRQRFSQIKVNLEPTQLCAGG-QYRKDSCDGDSGGPLMRF 376

Query:   315 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
              D  + + G+VS+G KC    +PGVYT V  Y  WI  N+
Sbjct:   377 RDESWVLEGIVSFGYKCGLKDWPGVYTNVAAYDIWIRQNV 416

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;ISS;NAS

GO:0006952 "defense response" evidence=NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0037515 Sp7 "Serine protease 7" [Drosophila melanogaster (taxid:7227)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 116/375 (30%), Positives = 172/375 (45%)

Query:    10 CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHC--GLEGRLPKVCCPQHTL 67
             C  P  + G C+SI  C+ L  ++     +P    +++NS C  G+ GR P VCC     
Sbjct:    31 CRNPNQKQGQCLSIYDCQSLLSVIQQSYVSPEDRTFLRNSQCLDGV-GRQPYVCCTSDRS 89

Query:    68 TNDQXXXXXXXXXXXXGAFTK-----------LPSPDNNECGVNAFNSSKRIVGGTPSER 116
                Q             + ++           LPSP   +CG ++F  S ++  G  +  
Sbjct:    90 FGSQEATSAAPPPTTTSSSSRGQDGQAGLGNLLPSPP--KCGPHSF--SNKVYNGNDTAI 145

Query:   117 GQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGS 176
              ++ WMA + +   R    G+ E  CGG+LI  RYVLTAAHCV     G  E  + H+ +
Sbjct:   146 DEFNWMALLEYVDNR----GRRELSCGGSLINNRYVLTAAHCV----IGAVETEVGHLTT 197

Query:   177 IDLE--DTSSGVS------------IEIERPIIHEQYTSARK--LNDIALFRLREDAPLS 220
             + L   DTS  V             + IE+  +H QY  A K  ++DIAL RL     L+
Sbjct:   198 VRLGEYDTSKDVDCIDDICNQPILQLGIEQATVHPQYDPANKNRIHDIALLRLDRPVVLN 257

Query:   221 DLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFS 280
             + IQP+CLP   + R  +   +   V+GWG T      + K R + + V D+  C + F+
Sbjct:   258 EYIQPVCLPL-VSTRMAINTGELLVVSGWGRTTTARKSTIKQR-LDLPVNDHDYCARKFA 315

Query:   281 NYGATINENILCAGVLXXXXXXXXXXXXXPLMYP-LDTKYYIIGVVSYGKKCAEVGFPGV 339
                  +  + LC G               PLM    D  +Y  GVVS+G +C   G+PGV
Sbjct:   316 TRNIHLISSQLCVGG-EFYRDSCDGDSGGPLMRRGFDQAWYQEGVVSFGNRCGLEGWPGV 374

Query:   340 YTRVTNYIQWIADNI 354
             YTRV +Y+ WI + I
Sbjct:   375 YTRVADYMDWIVETI 389

GO:0004185 "serine-type carboxypeptidase activity" evidence=NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;ISS;NAS

GO:0006952 "defense response" evidence=NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0005576 "extracellular region" evidence=IDA

GO:0035006 "melanization defense response" evidence=IMP;NAS

GO:0008236 "serine-type peptidase activity" evidence=NAS

GO:0035008 "positive regulation of melanization defense response" evidence=IMP

UNIPROTKB|I3LD44 LOC100627826 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 92/253 (36%), Positives = 132/253 (52%)

Query:   104 SSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDT 163
             SS RIVGG  S   QWPW A++ F+       G    +CGG++IT  +V+TAAHCV  D 
Sbjct:   235 SSPRIVGGNASSLAQWPWQASLQFQ-------GYH--LCGGSVITPVWVVTAAHCVY-DL 284

Query:   164 TGEYEP--YIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
                Y P  + + VG + L D S   S  +E+ I H +Y   R  NDIAL +L      ++
Sbjct:   285 ---YLPKSWTIQVGLVSLLD-SPAPSHLVEKIIYHSKYKPKRLGNDIALMKLAGPVAFNE 340

Query:   222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
             +IQP+CLP   N      + K  + +GWG+T   G  SP L H  + ++ N  C      
Sbjct:   341 MIQPVCLP---NSEENFPDGKMCWTSGWGATEDGGDASPVLNHAAVPLLSNKLCNHR-DV 396

Query:   282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
             YG  I+ ++LCAG L             PL+    T + ++G  S+G  CAE   PGVYT
Sbjct:   397 YGGLISPSMLCAGYLKGGVDSCQGDSGGPLVCQERTVWKLVGATSFGIGCAEANKPGVYT 456

Query:   342 RVTNYIQWIADNI 354
             R+T+++ WI + +
Sbjct:   457 RITSFLDWIHEQM 469

GO:0006508 "proteolysis" evidence=IEA

GO:0070008 "serine-type exopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

FB|FBgn0051728 CG31728 [Drosophila melanogaster (taxid:7227)]

 Score = 345 (126.5 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
 Identities = 88/264 (33%), Positives = 135/264 (51%)

Query:    96 ECG-VNAFN-SSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVL 153
             +CG  N      +RIVGG  +   ++PW+A + FK      +GK    CGG+LIT  ++L
Sbjct:   328 QCGNKNPVTPDQERIVGGINASPHEFPWIAVL-FK------SGKQ--FCGGSLITNSHIL 378

Query:   154 TAAHCVSPDTTGEYEPYIVHVG--SIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALF 211
             TAAHCV+  T+ +      H+G  +I  +     VS  I+R + H+ +  +   ND+A+ 
Sbjct:   379 TAAHCVARMTSWDVAALTAHLGDYNIGTDFEVQHVSRRIKRLVRHKGFEFSTLHNDVAIL 438

Query:   212 RLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVD 271
              L E  P +  IQPICLP   + +S  +  +   VAGWGS    GP    L+ V I +  
Sbjct:   439 TLSEPVPFTREIQPICLPTSPSQQSRSYSGQVATVAGWGSLRENGPQPSILQKVDIPIWT 498

Query:   272 NPKCRQIFSNYG-ATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK 330
             N +C + +       I E+++CAG               P++     +Y  +G+VS+G  
Sbjct:   499 NAECARKYGRAAPGGIIESMICAG--QAAKDSCSGDSGGPMVINDGGRYTQVGIVSWGIG 556

Query:   331 CAEVGFPGVYTRVTNYIQWIADNI 354
             C +  +PGVYTRVT+ + WI  NI
Sbjct:   557 CGKGQYPGVYTRVTSLLPWIYKNI 580

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

MGI|MGI:2155445 Tmprss3 "transmembrane protease, serine 3" [Mus musculus (taxid:10090)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 92/252 (36%), Positives = 129/252 (51%)

Query:   105 SKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTT 164
             S RIVGG  S   QWPW  ++ F+       G    +CGG++IT  +++TAAHCV  D  
Sbjct:   214 SPRIVGGNMSSLTQWPWQVSLQFQ-------GYH--LCGGSIITPLWIVTAAHCVY-DL- 262

Query:   165 GEYEP--YIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
               Y P  + V VG + L D S   S  +E+ I H +Y   R  NDIAL +L E     + 
Sbjct:   263 --YHPKSWTVQVGLVSLMD-SPVPSHLVEKIIYHSKYKPKRLGNDIALMKLSEPLTFDET 319

Query:   223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY 282
             IQPICLP   N      + K  + +GWG+T   G  SP L H  + ++ N  C      Y
Sbjct:   320 IQPICLP---NSEENFPDGKLCWTSGWGATEDGGDASPVLNHAAVPLISNKICNHR-DVY 375

Query:   283 GATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTR 342
             G  I+ ++LCAG L             PL+      + ++G  S+G  CAEV  PGVYTR
Sbjct:   376 GGIISPSMLCAGYLKGGVDSCQGDSGGPLVCQERRLWKLVGATSFGIGCAEVNKPGVYTR 435

Query:   343 VTNYIQWIADNI 354
             +T+++ WI + +
Sbjct:   436 ITSFLDWIHEQL 447

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006883 "cellular sodium ion homeostasis" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017080 "sodium channel regulator activity" evidence=ISO

GO:0043025 "neuronal cell body" evidence=IDA

FB|FBgn0003450 snk "snake" [Drosophila melanogaster (taxid:7227)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 109/346 (31%), Positives = 158/346 (45%)

Query:    18 GTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCP---QHTLTNDQXXX 74
             G CI   QC +   ++   R     V   +   C     +P +CCP   +H L   +   
Sbjct:   102 GYCILAYQCLH---VIREYR-----VHGTRIDICTHRNNVPVICCPLADKHVLAQ-RISA 152

Query:    75 XXXXXXXXXGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRA 134
                           L        G     S   IVGGTP+  G +P MAA+G+       
Sbjct:   153 TKCQEYNAAARRLHLTDTGRTFSGKQCVPSVPLIVGGTPTRHGLFPHMAALGWTQGSGSK 212

Query:   135 NGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS-IEIERP 193
             +   +W CGGAL+++ YVLTAAHC    T+G   P +V +G+  L +TS+    I+I   
Sbjct:   213 DQDIKWGCGGALVSELYVLTAAHCA---TSGSKPPDMVRLGARQLNETSATQQDIKILII 269

Query:   194 IIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFV--AGWGS 251
             ++H +Y S+   +DIAL +L      S+ ++P CL        +L E + P V  AGWG 
Sbjct:   270 VLHPKYRSSAYYHDIALLKLTRRVKFSEQVRPACL-------WQLPELQIPTVVAAGWGR 322

Query:   252 TVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT---INENILCAGVLXXXXXXXXXXXX 308
             T F G  S  LR V + VV    C+QI+         I E   CAG L            
Sbjct:   323 TEFLGAKSNALRQVDLDVVPQMTCKQIYRKERRLPRGIIEGQFCAGYLPGGRDTCQGDSG 382

Query:   309 XPLMYPLDTKY----YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 350
              P+ + L  +Y    +++G+ S+GK CA    PGVYTR+ +Y+ WI
Sbjct:   383 GPI-HALLPEYNCVAFVVGITSFGKFCAAPNAPGVYTRLYSYLDWI 427

GO:0009950 "dorsal/ventral axis specification" evidence=NAS;TAS

GO:0008063 "Toll signaling pathway" evidence=IGI;NAS;TAS

GO:0016485 "protein processing" evidence=IGI

GO:0007311 "maternal specification of dorsal/ventral axis, oocyte, germ-line encoded" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0008236 "serine-type peptidase activity" evidence=NAS

GO:0006508 "proteolysis" evidence=IEA;NAS;TAS

GO:0008233 "peptidase activity" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.766
3rd Layer	3.4.21.2	LOW CONFIDENCE prediction!
3rd Layer	3.4.21.10	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	355
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	9e-85
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	9e-84
pfam00089	218	pfam00089, Trypsin, Trypsin	2e-61
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	4e-31
pfam12032	54	pfam12032, CLIP, Regulatory CLIP domain of protein	4e-14
smart00680	52	smart00680, CLIP, Clip or disulphide knot domain	4e-11

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score =  256 bits (655), Expect = 9e-85
 Identities = 101/247 (40%), Positives = 146/247 (59%), Gaps = 16/247 (6%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG+ ++ G +PW  ++ +   R          CGG+LI+ R+VLTAAHCV       Y
Sbjct: 1   IVGGSEAKIGSFPWQVSLQYTGGR--------HFCGGSLISPRWVLTAAHCVYSSAPSNY 52

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +GS DL  +   G  I++++ I+H  Y  +   NDIAL +L+    LSD ++PI
Sbjct: 53  T---VRLGSHDLSSNEGGGQVIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPI 109

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP   +    L    T  V+GWG T   GPL   L+ V + +V N +C++ +S YG TI
Sbjct: 110 CLP---SSGYNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYS-YGGTI 165

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N+LCAG L GGKD+C GDSGGPL+   + +  ++G+VS+G  CA   +PGVYTRV++Y
Sbjct: 166 TDNMLCAGGLEGGKDACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSY 225

Query: 347 IQWIADN 353
           + WI   
Sbjct: 226 LDWIQKT 232

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score =  253 bits (648), Expect = 9e-84
 Identities = 102/245 (41%), Positives = 141/245 (57%), Gaps = 17/245 (6%)

Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE 166
           RIVGG+ +  G +PW  ++ +   R          CGG+LI+ R+VLTAAHCV       
Sbjct: 1   RIVGGSEANIGSFPWQVSLQYGGGR--------HFCGGSLISPRWVLTAAHCVRGSDPSN 52

Query: 167 YEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
                V +GS DL     G  I++ + IIH  Y  +   NDIAL +L+E   LSD ++PI
Sbjct: 53  IR---VRLGSHDLSSGEEGQVIKVSKVIIHPNYNPSTYDNDIALLKLKEPVTLSDNVRPI 109

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFR-GPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
           CLP   +    +    T  V+GWG T    G L   L+ V + +V N  CR+ +S  G  
Sbjct: 110 CLP---SSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSGGG-A 165

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           I +N+LCAG L GGKD+C GDSGGPL+   D ++ ++G+VS+G  CA  G PGVYTRV++
Sbjct: 166 ITDNMLCAGGLEGGKDACQGDSGGPLVC-NDGRWVLVGIVSWGSGCARPGKPGVYTRVSS 224

Query: 346 YIQWI 350
           Y+ WI
Sbjct: 225 YLDWI 229

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score =  195 bits (498), Expect = 2e-61
 Identities = 91/244 (37%), Positives = 134/244 (54%), Gaps = 27/244 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  ++ G +PW  ++             +  CGG+LI++ +VLTAAHCVS       
Sbjct: 1   IVGGDEAQPGSFPWQVSL--------QVSSGKHFCGGSLISENWVLTAAHCVS-----NA 47

Query: 168 EPYIVHVGSIDLEDTSSGVS-IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           +   V +G+ ++     G    ++++ I+H  Y      NDIAL +L+    L D ++PI
Sbjct: 48  KSVRVVLGAHNIVLREGGEQKFDVKKVIVHPNYNP-DTDNDIALLKLKSPVTLGDTVRPI 106

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP      S+L    T  V+GWG+T   G     L+ V + VV    CR   S YG T+
Sbjct: 107 CLPTA---SSDLPVGTTCTVSGWGNTKTLGL-PDTLQEVTVPVVSRETCR---SAYGGTV 159

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N++CAG  +GGKD+C GDSGGPL+        +IG+VS+G  CA   +PGVYT V++Y
Sbjct: 160 TDNMICAG--AGGKDACQGDSGGPLVCSDG---ELIGIVSWGYGCASGNYPGVYTPVSSY 214

Query: 347 IQWI 350
           + WI
Sbjct: 215 LDWI 218

Length = 218

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score =  121 bits (305), Expect = 4e-31
 Identities = 82/263 (31%), Positives = 112/263 (42%), Gaps = 19/263 (7%)

Query: 99  VNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHC 158
             A   S RI+GG+ +  G++P + A+  +I     +G     CGG+ +  RYVLTAAHC
Sbjct: 24  QTADEVSSRIIGGSNANAGEYPSLVALVDRISDY-VSGT---FCGGSKLGGRYVLTAAHC 79

Query: 159 VSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAP 218
               +    +   V V   DL D+S      +    +HE Y+     NDIA+  L   A 
Sbjct: 80  ADASSPISSDVNRVVV---DLNDSSQAERGHVRTIYVHEFYSPGNLGNDIAVLELARAAS 136

Query: 219 LSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP--LSPK---LRHVQISVVDNP 273
           L  +        DT   + +          +G T        SPK   L  V +  V   
Sbjct: 137 LPRVKITSFDASDT-FLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLS 195

Query: 274 KCRQIFSNYGATINENIL---CAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-K 329
            C Q      A+     L   CAG     KD+C GDSGGP+ +  +      GVVS+G  
Sbjct: 196 TCAQYKGCANASDGATGLTGFCAG--RPPKDACQGDSGGPIFHKGEEGRVQRGVVSWGDG 253

Query: 330 KCAEVGFPGVYTRVTNYIQWIAD 352
            C     PGVYT V+NY  WIA 
Sbjct: 254 GCGGTLIPGVYTNVSNYQDWIAA 276

Length = 413

>gnl|CDD|221387 pfam12032, CLIP, Regulatory CLIP domain of proteinases

 Score = 65.9 bits (161), Expect = 4e-14
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 10 CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRL-PKVCC 62
          C+TP  E GTC+SIR+C  L  IL      P    +++ S CG EG   P VCC
Sbjct: 1  CTTPNGEPGTCVSIRECPSLLKILKKPNLTPEDTNFLRKSQCGFEGSNDPLVCC 54

CLIP is a regulatory domain which controls the proteinase action of various proteins of the trypsin family, e.g. easter and pap2. The CLIP domain remains linked to the protease domain after cleavage of a conserved residue which retains the protein in zymogen form. It is named CLIP because it can be drawn in the shape of a paper clip. It has many disulphide bonds and highly conserved cysteine residues, and so it folds extensively. Length = 54

>gnl|CDD|197829 smart00680, CLIP, Clip or disulphide knot domain

 Score = 57.1 bits (138), Expect = 4e-11
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 10 CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCP 63
          C TP  E GTC+ I  C  L  +L    + P  + +++ S CG   R P VCCP
Sbjct: 1  CRTPDGERGTCVPISDCPSLLSLLKK--DPPEDLNFLRKSQCGFGNREPLVCCP 52

Present in horseshoe crab proclotting enzyme N-terminal domain, Drosophila Easter and silkworm prophenoloxidase-activating enzyme. Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	355
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	100.0
KOG3627|consensus	256		100.0
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	100.0
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	100.0
COG5640	413	Secreted trypsin-like serine protease [Posttransla	100.0
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	99.81
PF09342	267	DUF1986: Domain of unknown function (DUF1986); Int	99.47
PF12032	54	CLIP: Regulatory CLIP domain of proteinases; Inter	99.3
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	99.29
smart00680	52	CLIP Clip or disulphide knot domain. Present in ho	99.06
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.46
PF13365	120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	98.41
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.27
PRK10898	353	serine endoprotease; Provisional	98.2
PRK10139	455	serine endoprotease; Provisional	98.13
PRK10942	473	serine endoprotease; Provisional	97.99
PF02395	769	Peptidase_S6: Immunoglobulin A1 protease Serine pr	97.17
PF00863	235	Peptidase_C4: Peptidase family C4 This family belo	89.17
PF00947	127	Pico_P2A: Picornavirus core protein 2A; InterPro:	87.6
PF00548	172	Peptidase_C3: 3C cysteine protease (picornain 3C);	86.11
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	82.78

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=100.00  E-value=5.3e-47  Score=334.72  Aligned_cols=231  Identities=43%  Similarity=0.846  Sum_probs=199.5

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||+++..++|||+|.|++..        ..+.|+||||+++||||||||+....   .....|++|..+.... ...+
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~~--------~~~~C~GtlIs~~~VLTaAhC~~~~~---~~~~~v~~g~~~~~~~~~~~~   69 (232)
T cd00190           1 IVGGSEAKIGSFPWQVSLQYTG--------GRHFCGGSLISPRWVLTAAHCVYSSA---PSNYTVRLGSHDLSSNEGGGQ   69 (232)
T ss_pred             CcCCeECCCCCCCCEEEEEccC--------CcEEEEEEEeeCCEEEECHHhcCCCC---CccEEEEeCcccccCCCCceE
Confidence            6899999999999999997642        35799999999999999999997632   3568899998877543 3567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....+|||||||++++.++++++|||||....   ....+..+.++|||........+..++...
T Consensus        70 ~~~v~~~~~hp~y~~~~~~~DiAll~L~~~~~~~~~v~picl~~~~~---~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~  146 (232)
T cd00190          70 VIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGY---NLPAGTTCTVSGWGRTSEGGPLPDVLQEVN  146 (232)
T ss_pred             EEEEEEEEECCCCCCCCCcCCEEEEEECCcccCCCcccceECCCccc---cCCCCCEEEEEeCCcCCCCCCCCceeeEEE
Confidence            88999999999999988889999999999999999999999997742   345678899999999876545677899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +.+++...|...+.. ...+.++++|++......+.|.|||||||++..+++++|+||+|+|..|+..+.|++||+|+.|
T Consensus       147 ~~~~~~~~C~~~~~~-~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~lvGI~s~g~~c~~~~~~~~~t~v~~~  225 (232)
T cd00190         147 VPIVSNAECKRAYSY-GGTITDNMLCAGGLEGGKDACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSY  225 (232)
T ss_pred             eeeECHHHhhhhccC-cccCCCceEeeCCCCCCCccccCCCCCcEEEEeCCEEEEEEEEehhhccCCCCCCCEEEEcHHh
Confidence            999999999988764 2367899999987654678999999999999988999999999999999876789999999999


Q ss_pred             HHHHHhH
Q psy2626         347 IQWIADN  353 (355)
Q Consensus       347 ~~WI~~~  353 (355)
                      ++||+++
T Consensus       226 ~~WI~~~  232 (232)
T cd00190         226 LDWIQKT  232 (232)
T ss_pred             hHHhhcC
Confidence            9999874

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>KOG3627|consensus

Probab=100.00  E-value=1.1e-45  Score=332.29  Aligned_cols=239  Identities=41%  Similarity=0.813  Sum_probs=199.0

Q ss_pred             CCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC--
Q psy2626         105 SKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT--  182 (355)
Q Consensus       105 ~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~--  182 (355)
                      ..||+||.++..++|||+|.|.+...       ..+.|+|+||+++||||||||+....  .. ...|++|++.....  
T Consensus        10 ~~~i~~g~~~~~~~~Pw~~~l~~~~~-------~~~~Cggsli~~~~vltaaHC~~~~~--~~-~~~V~~G~~~~~~~~~   79 (256)
T KOG3627|consen   10 EGRIVGGTEAEPGSFPWQVSLQYGGN-------GRHLCGGSLISPRWVLTAAHCVKGAS--AS-LYTVRLGEHDINLSVS   79 (256)
T ss_pred             cCCEeCCccCCCCCCCCEEEEEECCC-------cceeeeeEEeeCCEEEEChhhCCCCC--Cc-ceEEEECccccccccc
Confidence            47999999999999999999987531       24699999999999999999998632  12 78899998755443  


Q ss_pred             CC--cEEEEEeeeEeCCCCCCCCCC-CCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCC-CCC
Q psy2626         183 SS--GVSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFR-GPL  258 (355)
Q Consensus       183 ~~--~~~~~v~~i~~hp~y~~~~~~-~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~-~~~  258 (355)
                      ..  .....|.++++||+|+..... ||||||+|.+++.|+++|+|||||..... .....+..+.++|||.+... ...
T Consensus        80 ~~~~~~~~~v~~~i~H~~y~~~~~~~nDiall~l~~~v~~~~~i~piclp~~~~~-~~~~~~~~~~v~GWG~~~~~~~~~  158 (256)
T KOG3627|consen   80 EGEEQLVGDVEKIIVHPNYNPRTLENNDIALLRLSEPVTFSSHIQPICLPSSADP-YFPPGGTTCLVSGWGRTESGGGPL  158 (256)
T ss_pred             cCchhhhceeeEEEECCCCCCCCCCCCCEEEEEECCCcccCCcccccCCCCCccc-CCCCCCCEEEEEeCCCcCCCCCCC
Confidence            12  244557888999999998888 99999999999999999999999855421 12345578899999998765 236


Q ss_pred             CccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCC
Q psy2626         259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFP  337 (355)
Q Consensus       259 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p  337 (355)
                      +..|+++++++++...|+..+.... .+.+.||||+......++|+|||||||++..+.+++++||+|||.. |+..+.|
T Consensus       159 ~~~L~~~~v~i~~~~~C~~~~~~~~-~~~~~~~Ca~~~~~~~~~C~GDSGGPLv~~~~~~~~~~GivS~G~~~C~~~~~P  237 (256)
T KOG3627|consen  159 PDTLQEVDVPIISNSECRRAYGGLG-TITDTMLCAGGPEGGKDACQGDSGGPLVCEDNGRWVLVGIVSWGSGGCGQPNYP  237 (256)
T ss_pred             CceeEEEEEeEcChhHhcccccCcc-ccCCCEEeeCccCCCCccccCCCCCeEEEeeCCcEEEEEEEEecCCCCCCCCCC
Confidence            8889999999999999999886422 4667789999865578899999999999988778999999999998 9998899


Q ss_pred             cEEEeCcccHHHHHhHhC
Q psy2626         338 GVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       338 ~vyt~V~~y~~WI~~~i~  355 (355)
                      ++||+|+.|++||++.+.
T Consensus       238 ~vyt~V~~y~~WI~~~~~  255 (256)
T KOG3627|consen  238 GVYTRVSSYLDWIKENIG  255 (256)
T ss_pred             eEEeEhHHhHHHHHHHhc
Confidence            999999999999999873

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=100.00  E-value=6.5e-44  Score=314.94  Aligned_cols=228  Identities=43%  Similarity=0.844  Sum_probs=195.2

Q ss_pred             ceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcE
Q psy2626         107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGV  186 (355)
Q Consensus       107 ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~  186 (355)
                      ||+||+++..++|||+|.|++..        ..+.|+||||++++|||||||+....   ...+.|++|.++........
T Consensus         1 ~~~~G~~~~~~~~Pw~~~i~~~~--------~~~~C~GtlIs~~~VLTaahC~~~~~---~~~~~v~~g~~~~~~~~~~~   69 (229)
T smart00020        1 RIVGGSEANIGSFPWQVSLQYRG--------GRHFCGGSLISPRWVLTAAHCVYGSD---PSNIRVRLGSHDLSSGEEGQ   69 (229)
T ss_pred             CccCCCcCCCCCCCcEEEEEEcC--------CCcEEEEEEecCCEEEECHHHcCCCC---CcceEEEeCcccCCCCCCce
Confidence            68999999999999999997542        35789999999999999999998632   34688999988776554447


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCC-CCCCCccceEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVF-RGPLSPKLRHV  265 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~-~~~~~~~l~~~  265 (355)
                      .+.|.++++||+|+.....+|||||+|++|+.+++.++|||||....   ....+..+.++|||.... ....+..++..
T Consensus        70 ~~~v~~~~~~p~~~~~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~~---~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~  146 (229)
T smart00020       70 VIKVSKVIIHPNYNPSTYDNDIALLKLKSPVTLSDNVRPICLPSSNY---NVPAGTTCTVSGWGRTSEGAGSLPDTLQEV  146 (229)
T ss_pred             EEeeEEEEECCCCCCCCCcCCEEEEEECcccCCCCceeeccCCCccc---ccCCCCEEEEEeCCCCCCCCCcCCCEeeEE
Confidence            88999999999999888889999999999999999999999997632   345678899999998763 23356778899


Q ss_pred             EEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcc
Q psy2626         266 QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN  345 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~  345 (355)
                      .+.+++.+.|...+.. ...+...++|++......+.|.|||||||+...+ +|+|+||+|+|..|+..+.|.+|++|+.
T Consensus       147 ~~~~~~~~~C~~~~~~-~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~-~~~l~Gi~s~g~~C~~~~~~~~~~~i~~  224 (229)
T smart00020      147 NVPIVSNATCRRAYSG-GGAITDNMLCAGGLEGGKDACQGDSGGPLVCNDG-RWVLVGIVSWGSGCARPGKPGVYTRVSS  224 (229)
T ss_pred             EEEEeCHHHhhhhhcc-ccccCCCcEeecCCCCCCcccCCCCCCeeEEECC-CEEEEEEEEECCCCCCCCCCCEEEEecc
Confidence            9999999999987754 1357889999987655678999999999999887 9999999999999986778999999999


Q ss_pred             cHHHH
Q psy2626         346 YIQWI  350 (355)
Q Consensus       346 y~~WI  350 (355)
                      |++||
T Consensus       225 ~~~WI  229 (229)
T smart00020      225 YLDWI  229 (229)
T ss_pred             ccccC
Confidence            99998

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=4.4e-41  Score=294.62  Aligned_cols=219  Identities=40%  Similarity=0.835  Sum_probs=187.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.++..++|||+|.|.+...        .++|+|+||+++||||||||+..     .....+++|....... ...+
T Consensus         1 i~~g~~~~~~~~p~~v~i~~~~~--------~~~C~G~li~~~~vLTaahC~~~-----~~~~~v~~g~~~~~~~~~~~~   67 (220)
T PF00089_consen    1 IVGGDPASPGEFPWVVSIRYSNG--------RFFCTGTLISPRWVLTAAHCVDG-----ASDIKVRLGTYSIRNSDGSEQ   67 (220)
T ss_dssp             SBSSEECGTTSSTTEEEEEETTT--------EEEEEEEEEETTEEEEEGGGHTS-----GGSEEEEESESBTTSTTTTSE
T ss_pred             CCCCEECCCCCCCeEEEEeeCCC--------CeeEeEEeccccccccccccccc-----ccccccccccccccccccccc
Confidence            78999999999999999977531        68999999999999999999975     2457788998444433 3358


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|++++.||+|+.....+|||||+|++++.+.+.++|+||+....   ....+..+.+.|||.....+ ....++...
T Consensus        68 ~~~v~~~~~h~~~~~~~~~~DiAll~L~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~  143 (220)
T PF00089_consen   68 TIKVSKIIIHPKYDPSTYDNDIALLKLDRPITFGDNIQPICLPSAGS---DPNVGTSCIVVGWGRTSDNG-YSSNLQSVT  143 (220)
T ss_dssp             EEEEEEEEEETTSBTTTTTTSEEEEEESSSSEHBSSBEESBBTSTTH---TTTTTSEEEEEESSBSSTTS-BTSBEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccc-ccccccccc
Confidence            89999999999999988889999999999999999999999997432   23577889999999976544 566889999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +.+++.+.|...+..   .+.+.++|++.. ...+.|.|||||||++...   +|+||+|++..|...+.|.+|++|+.|
T Consensus       144 ~~~~~~~~c~~~~~~---~~~~~~~c~~~~-~~~~~~~g~sG~pl~~~~~---~lvGI~s~~~~c~~~~~~~v~~~v~~~  216 (220)
T PF00089_consen  144 VPVVSRKTCRSSYND---NLTPNMICAGSS-GSGDACQGDSGGPLICNNN---YLVGIVSFGENCGSPNYPGVYTRVSSY  216 (220)
T ss_dssp             EEEEEHHHHHHHTTT---TSTTTEEEEETT-SSSBGGTTTTTSEEEETTE---EEEEEEEEESSSSBTTSEEEEEEGGGG
T ss_pred             ccccccccccccccc---cccccccccccc-cccccccccccccccccee---eecceeeecCCCCCCCcCEEEEEHHHh
Confidence            999999999987543   478899999876 4689999999999998664   899999999889988789999999999


Q ss_pred             HHHH
Q psy2626         347 IQWI  350 (355)
Q Consensus       347 ~~WI  350 (355)
                      ++||
T Consensus       217 ~~WI  220 (220)
T PF00089_consen  217 LDWI  220 (220)
T ss_dssp             HHHH
T ss_pred             hccC
Confidence            9999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-35  Score=261.37  Aligned_cols=239  Identities=31%  Similarity=0.475  Sum_probs=179.1

Q ss_pred             CCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCC
Q psy2626         104 SSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTS  183 (355)
Q Consensus       104 ~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~  183 (355)
                      .+.||+||..|..++||++|+|..+..    +....-+|||++|..|||||||||+...........   .+..+++...
T Consensus        29 vs~rIigGs~Anag~~P~~VaLv~~is----d~~s~tfCGgs~l~~RYvLTAAHC~~~~s~is~d~~---~vv~~l~d~S  101 (413)
T COG5640          29 VSSRIIGGSNANAGEYPSLVALVDRIS----DYVSGTFCGGSKLGGRYVLTAAHCADASSPISSDVN---RVVVDLNDSS  101 (413)
T ss_pred             cceeEecCcccccccCchHHHHHhhcc----cccceeEeccceecceEEeeehhhccCCCCccccce---EEEecccccc
Confidence            578999999999999999999977654    223456899999999999999999987443222333   3344555555


Q ss_pred             CcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCC-CccccccCCCCCccccccCCCceEEEEeccCCCCC-----C
Q psy2626         184 SGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD-LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-----P  257 (355)
Q Consensus       184 ~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~-~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-----~  257 (355)
                      ..+...|..++.|..|...++.||||+++|.++..... .+.-.-  ..+...............+||.+....     +
T Consensus       102 q~~rg~vr~i~~~efY~~~n~~ND~Av~~l~~~a~~pr~ki~~~~--~sdt~l~sv~~~s~~~n~t~~~~~~~~v~~~~p  179 (413)
T COG5640         102 QAERGHVRTIYVHEFYSPGNLGNDIAVLELARAASLPRVKITSFD--ASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSP  179 (413)
T ss_pred             cccCcceEEEeeecccccccccCcceeeccccccccchhheeecc--CcccceecccccccccceeeeeeeecCCCCCCC
Confidence            66788999999999999999999999999998765321 111000  011111122333445667787665321     1


Q ss_pred             CCccceEEEEeeeChhHHHhhhhcC--C---CCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-C
Q psy2626         258 LSPKLRHVQISVVDNPKCRQIFSNY--G---ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-C  331 (355)
Q Consensus       258 ~~~~l~~~~~~~~~~~~C~~~~~~~--~---~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C  331 (355)
                      ....+++..+..++...|.+.+...  .   ..++  -+||+...  +++|+||||||++...+..+.++||+|||.+ |
T Consensus       180 ~gt~l~e~~v~fv~~stc~~~~g~an~~dg~~~lT--~~cag~~~--~daCqGDSGGPi~~~g~~G~vQ~GVvSwG~~~C  255 (413)
T COG5640         180 KGTILHEVAVLFVPLSTCAQYKGCANASDGATGLT--GFCAGRPP--KDACQGDSGGPIFHKGEEGRVQRGVVSWGDGGC  255 (413)
T ss_pred             ccceeeeeeeeeechHHhhhhccccccCCCCCCcc--ceecCCCC--cccccCCCCCceEEeCCCccEEEeEEEecCCCC
Confidence            2347899999999999999987411  1   1223  39999754  8999999999999998888999999999998 9


Q ss_pred             CCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         332 AEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       332 ~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      +.+..|+|||+|+.|.+||...|+
T Consensus       256 g~t~~~gVyT~vsny~~WI~a~~~  279 (413)
T COG5640         256 GGTLIPGVYTNVSNYQDWIAAMTN  279 (413)
T ss_pred             CCCCcceeEEehhHHHHHHHHHhc
Confidence            999999999999999999998764

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=99.81  E-value=1.1e-18  Score=158.99  Aligned_cols=218  Identities=26%  Similarity=0.508  Sum_probs=142.6

Q ss_pred             CCCCCCcCCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCc------Cc
Q psy2626          96 ECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY------EP  169 (355)
Q Consensus        96 ~CG~~~~~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~------~~  169 (355)
                      .||........++.+|..+...+.||++.+.....     ....+.++|||||+||||||+||+..... .+      ..
T Consensus        30 ~CG~~~~~~~~~~~~g~~~~~~~~pW~v~v~~~~~-----~~~~~~~~gtlIS~RHiLtss~~~~~~~~-~W~~~~~~~~  103 (282)
T PF03761_consen   30 TCGKKKLPYPSKVFNGTPAESGEAPWAVSVYTKNH-----NEGNYFSTGTLISPRHILTSSHCVMNDKS-KWLNGEEFDN  103 (282)
T ss_pred             hcCCCCCCCcccccCCcccccCCCCCEEEEEeccC-----cccceecceEEeccCeEEEeeeEEEeccc-ccccCccccc
Confidence            79976544566789999999999999999977543     22346779999999999999999974211 11      00


Q ss_pred             e-------EEEecc-----ccc-----cCCCCcEEEEEeeeEeCCCC----CCCCCCCCeEEEEeCCCCCCCCCcccccc
Q psy2626         170 Y-------IVHVGS-----IDL-----EDTSSGVSIEIERPIIHEQY----TSARKLNDIALFRLREDAPLSDLIQPICL  228 (355)
Q Consensus       170 ~-------~v~~G~-----~~~-----~~~~~~~~~~v~~i~~hp~y----~~~~~~~DIALl~L~~~v~~~~~v~picL  228 (355)
                      .       .+.+-.     ...     ..........|.++++--.-    .......+++||+|+++  ++....|+||
T Consensus       104 ~~C~~~~~~l~vP~~~l~~~~v~~~~~~~~~~~~~~~v~ka~il~~C~~~~~~~~~~~~~mIlEl~~~--~~~~~~~~Cl  181 (282)
T PF03761_consen  104 KKCEGNNNHLIVPEEVLSKIDVRCCNCFSNGKCFSIKVKKAYILNGCKKIKKNFNRPYSPMILELEED--FSKNVSPPCL  181 (282)
T ss_pred             ceeeCCCceEEeCHHHhccEEEEeecccccCCcccceeEEEEEEecCCCcccccccccceEEEEEccc--ccccCCCEEe
Confidence            0       011100     001     00112233556666664332    23344589999999999  7789999999


Q ss_pred             CCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCC
Q psy2626         229 PYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSG  308 (355)
Q Consensus       229 p~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsG  308 (355)
                      |.+..   ....+..+.+.|+  .     ....+....+.+.....|..            .++     .....|.||+|
T Consensus       182 ~~~~~---~~~~~~~~~~yg~--~-----~~~~~~~~~~~i~~~~~~~~------------~~~-----~~~~~~~~d~G  234 (282)
T PF03761_consen  182 ADSST---NWEKGDEVDVYGF--N-----STGKLKHRKLKITNCTKCAY------------SIC-----TKQYSCKGDRG  234 (282)
T ss_pred             CCCcc---ccccCceEEEeec--C-----CCCeEEEEEEEEEEeeccce------------eEe-----cccccCCCCcc
Confidence            97654   3345555666666  1     23345555665554322111            122     24678999999


Q ss_pred             CcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeCcccHHHH
Q psy2626         309 GPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWI  350 (355)
Q Consensus       309 gPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V~~y~~WI  350 (355)
                      |||+...+++|+|+||.+.+.. |...  ...|.+|..|.+=|
T Consensus       235 g~lv~~~~gr~tlIGv~~~~~~~~~~~--~~~f~~v~~~~~~I  275 (282)
T PF03761_consen  235 GPLVKNINGRWTLIGVGASGNYECNKN--NSYFFNVSWYQDEI  275 (282)
T ss_pred             CeEEEEECCCEEEEEEEccCCCccccc--ccEEEEHHHhhhhh
Confidence            9999999999999999988764 5432  56788988887644

>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.47  E-value=1.2e-12  Score=111.22  Aligned_cols=115  Identities=18%  Similarity=0.311  Sum_probs=85.5

Q ss_pred             CCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEecccccc---CCCCcEEEEEeee
Q psy2626         117 GQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLE---DTSSGVSIEIERP  193 (355)
Q Consensus       117 ~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~---~~~~~~~~~v~~i  193 (355)
                      -.|||+|.|+..+         .+.|+|+||.+.|||++..|+.+. .....-..|.+|.....   ..+..|.+.|..+
T Consensus        14 y~WPWlA~IYvdG---------~~~CsgvLlD~~WlLvsssCl~~I-~L~~~YvsallG~~Kt~~~v~Gp~EQI~rVD~~   83 (267)
T PF09342_consen   14 YHWPWLADIYVDG---------RYWCSGVLLDPHWLLVSSSCLRGI-SLSHHYVSALLGGGKTYLSVDGPHEQISRVDCF   83 (267)
T ss_pred             ccCcceeeEEEcC---------eEEEEEEEeccceEEEeccccCCc-ccccceEEEEecCcceecccCCChheEEEeeee
Confidence            4599999998754         489999999999999999999762 22223456777765422   2255677777776


Q ss_pred             EeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEecc
Q psy2626         194 IIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS  251 (355)
Q Consensus       194 ~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~  251 (355)
                      ..-|+       .+++||.|++|+.|+.+|+|..||....   .......|..+|-..
T Consensus        84 ~~V~~-------S~v~LLHL~~~~~fTr~VlP~flp~~~~---~~~~~~~CVAVg~d~  131 (267)
T PF09342_consen   84 KDVPE-------SNVLLLHLEQPANFTRYVLPTFLPETSN---ENESDDECVAVGHDD  131 (267)
T ss_pred             eeccc-------cceeeeeecCcccceeeecccccccccC---CCCCCCceEEEEccc
Confidence            65444       6899999999999999999999996332   334555888888654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].

>PF12032 CLIP: Regulatory CLIP domain of proteinases; InterPro: IPR022700 CLIP is a regulatory domain which controls the proteinase action of various proteins of the trypsin family, e

Probab=99.30  E-value=1.1e-12  Score=88.03  Aligned_cols=53  Identities=40%  Similarity=0.972  Sum_probs=46.3

Q ss_pred             CCCCCCCcceEeecccCHHHHHHhhcCCCChhhhhccccccccCCCC-CceeeC
Q psy2626          10 CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGR-LPKVCC   62 (355)
Q Consensus        10 C~~~~~~~g~C~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~-~~~vCC   62 (355)
                      |++|+|+.|+||++++||+++++++....++++.+||++++||+.+. .++|||
T Consensus         1 C~tp~g~~G~Cv~i~~C~~l~~~l~~~~~~~~~~~~l~~s~Cg~~~~~~~~VCC   54 (54)
T PF12032_consen    1 CTTPNGEPGRCVPIRSCPPLLEILRSKPLSPEERNFLRQSQCGFDGNRDPLVCC   54 (54)
T ss_dssp             EE-TTSSEEEEEETTTBHHHHHHHHHS---HHHHHHHHHTESEECSS-SCEEEE
T ss_pred             CcCCCCCcEEEecHHHCHHHHHHHhcCCCCHHHHHHHHHccCCCCCCCCceeeC
Confidence            78999999999999999999999998888999999999999999766 899998

g. easter and pap2. The CLIP domain remains linked to the protease domain after cleavage of a conserved residue which retains the protein in zymogen form. It is named CLIP because it can be drawn in the shape of a paper clip. It has many disulphide bonds and highly conserved cysteine residues, and so it folds extensively [, ]. This entry represents the CLIP domain and is found in association with PF00089 from PFAM.; PDB: 2IKE_A 2XXL_A 2IKD_A.

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=99.29  E-value=6.2e-11  Score=103.22  Aligned_cols=204  Identities=20%  Similarity=0.246  Sum_probs=112.0

Q ss_pred             cCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEe-ccccccCCCCcEEEEEee
Q psy2626         114 SERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHV-GSIDLEDTSSGVSIEIER  192 (355)
Q Consensus       114 a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~-G~~~~~~~~~~~~~~v~~  192 (355)
                      .....|||-+...+..      ....+-|+++||+++.||||+||+.....+. ....+.. |..  ........+....
T Consensus        44 ~dt~~~Py~av~~~~~------~tG~~~~~~~lI~pntvLTa~Hc~~s~~~G~-~~~~~~p~g~~--~~~~~~~~~~~~~  114 (251)
T COG3591          44 TDTTQFPYSAVVQFEA------ATGRLCTAATLIGPNTVLTAGHCIYSPDYGE-DDIAAAPPGVN--SDGGPFYGITKIE  114 (251)
T ss_pred             ccCCCCCcceeEEeec------CCCcceeeEEEEcCceEEEeeeEEecCCCCh-hhhhhcCCccc--CCCCCCCceeeEE
Confidence            3456899999985543      2334567789999999999999998733221 2222222 211  1111112222333


Q ss_pred             eEeCCC--CCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeee
Q psy2626         193 PIIHEQ--YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVV  270 (355)
Q Consensus       193 i~~hp~--y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~  270 (355)
                      ..+.|+  |.......|+..+.|+....+.+.+...-++...    ....+....+.||-.....     .+++.+    
T Consensus       115 ~~~~~g~~~~~d~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~d~i~v~GYP~dk~~-----~~~~~e----  181 (251)
T COG3591         115 IRVYPGELYKEDGASYDVGEAALESGINIGDVVNYLKRNTAS----EAKANDRITVIGYPGDKPN-----IGTMWE----  181 (251)
T ss_pred             EEecCCceeccCCceeeccHHHhccCCCcccccccccccccc----ccccCceeEEEeccCCCCc-----ceeEee----
Confidence            322443  3444555788888887555555555544444333    2344555788898544321     111110    


Q ss_pred             ChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeC-cccHHH
Q psy2626         271 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV-TNYIQW  349 (355)
Q Consensus       271 ~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V-~~y~~W  349 (355)
                         .|....     .+....+     .-..|++.|+||+|++...+   +++||.+-|..-.....-.-.+|+ ..+++|
T Consensus       182 ---~t~~v~-----~~~~~~l-----~y~~dT~pG~SGSpv~~~~~---~vigv~~~g~~~~~~~~~n~~vr~t~~~~~~  245 (251)
T COG3591         182 ---STGKVN-----SIKGNKL-----FYDADTLPGSSGSPVLISKD---EVIGVHYNGPGANGGSLANNAVRLTPEILNF  245 (251)
T ss_pred             ---ecceeE-----EEecceE-----EEEecccCCCCCCceEecCc---eEEEEEecCCCcccccccCcceEecHHHHHH
Confidence               111100     0111111     11578999999999998665   899999988762211122233444 456799


Q ss_pred             HHhHhC
Q psy2626         350 IADNIS  355 (355)
Q Consensus       350 I~~~i~  355 (355)
                      |++.++
T Consensus       246 I~~~~~  251 (251)
T COG3591         246 IQQNIK  251 (251)
T ss_pred             HHHhhC
Confidence            999875

>smart00680 CLIP Clip or disulphide knot domain

Probab=99.06  E-value=1.7e-10  Score=76.73  Aligned_cols=52  Identities=40%  Similarity=1.025  Sum_probs=46.5

Q ss_pred             CCCCCCCcceEeecccCHHHHHHhhcCCCChhhhhccccccccCCCCCceeeCC
Q psy2626          10 CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCP   63 (355)
Q Consensus        10 C~~~~~~~g~C~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~vCC~   63 (355)
                      |.+|++..|.|+++++|+.+.++++...  +++.+|++.++|++.+..++||||
T Consensus         1 C~tp~~~~G~Cv~~~~C~~~~~~l~~~~--~~~~~~l~~~~Cg~~~~~~~vCCp   52 (52)
T smart00680        1 CRTPDGERGTCVPISDCPSLLSLLKSDP--PEDLNFLRKSQCGFGNREPLVCCP   52 (52)
T ss_pred             CcCCCCCcEEeEEHHhChHHHHHHccCC--HHHHHHHHHccCCCCCCCEeeeCc
Confidence            8899999999999999999999987654  778899999999987677899997

Present in horseshoe crab proclotting enzyme N-terminal domain, Drosophila Easter and silkworm prophenoloxidase-activating enzyme.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.46  E-value=3e-06  Score=81.83  Aligned_cols=142  Identities=19%  Similarity=0.227  Sum_probs=81.1

Q ss_pred             ceeeeEEEEeCC-EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCC
Q psy2626         139 EWMCGGALITKR-YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDA  217 (355)
Q Consensus       139 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v  217 (355)
                      ...++|.+|++. ||||++|.+.+.     ....|.+..        ...+..+-+..++.       .||||||++.+ 
T Consensus        57 ~~~GSGfii~~~G~IlTn~Hvv~~~-----~~i~V~~~~--------~~~~~a~vv~~d~~-------~DlAllkv~~~-  115 (428)
T TIGR02037        57 RGLGSGVIISADGYILTNNHVVDGA-----DEITVTLSD--------GREFKAKLVGKDPR-------TDIAVLKIDAK-  115 (428)
T ss_pred             cceeeEEEECCCCEEEEcHHHcCCC-----CeEEEEeCC--------CCEEEEEEEEecCC-------CCEEEEEecCC-
Confidence            467999999976 999999999752     234555432        22344444444444       69999999864 


Q ss_pred             CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccC
Q psy2626         218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS  297 (355)
Q Consensus       218 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~  297 (355)
                         ..+.++.|....    ....++..++.|+....     ........+.-.....    ...   .....++=.    
T Consensus       116 ---~~~~~~~l~~~~----~~~~G~~v~aiG~p~g~-----~~~~t~G~vs~~~~~~----~~~---~~~~~~i~t----  172 (428)
T TIGR02037       116 ---KNLPVIKLGDSD----KLRVGDWVLAIGNPFGL-----GQTVTSGIVSALGRSG----LGI---GDYENFIQT----  172 (428)
T ss_pred             ---CCceEEEccCCC----CCCCCCEEEEEECCCcC-----CCcEEEEEEEecccCc----cCC---CCccceEEE----
Confidence               235566665333    34678888898986421     1112222222111110    000   000111111    


Q ss_pred             CCCCCCcCCCCCcceeeeCCeEEEEEEEEeC
Q psy2626         298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG  328 (355)
Q Consensus       298 ~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g  328 (355)
                       +...-.|.|||||+-..+   .++||.+..
T Consensus       173 -da~i~~GnSGGpl~n~~G---~viGI~~~~  199 (428)
T TIGR02037       173 -DAAINPGNSGGPLVNLRG---EVIGINTAI  199 (428)
T ss_pred             -CCCCCCCCCCCceECCCC---eEEEEEeEE
Confidence             234567999999986543   699998764

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A

Probab=98.41  E-value=1.4e-06  Score=68.26  Aligned_cols=20  Identities=50%  Similarity=0.639  Sum_probs=18.9

Q ss_pred             eeEEEEeCC-EEEeeccccCC
Q psy2626         142 CGGALITKR-YVLTAAHCVSP  161 (355)
Q Consensus       142 C~GtLIs~~-~VLTAAhCv~~  161 (355)
                      |+|.+|+++ +|||||||+..
T Consensus         1 GTGf~i~~~g~ilT~~Hvv~~   21 (120)
T PF13365_consen    1 GTGFLIGPDGYILTAAHVVED   21 (120)
T ss_dssp             EEEEEEETTTEEEEEHHHHTC
T ss_pred             CEEEEEcCCceEEEchhheec
Confidence            789999999 99999999986

...

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.27  E-value=3e-05  Score=72.77  Aligned_cols=141  Identities=18%  Similarity=0.279  Sum_probs=78.4

Q ss_pred             ceeeeEEEEeCC-EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCC
Q psy2626         139 EWMCGGALITKR-YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDA  217 (355)
Q Consensus       139 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v  217 (355)
                      ....+|.+|+++ ||||++|-+...     ....|.+..        ...+..+-+..+|.       .||||||++.+-
T Consensus        77 ~~~GSG~vi~~~G~IlTn~HVV~~~-----~~i~V~~~d--------g~~~~a~vv~~d~~-------~DlAvlkv~~~~  136 (351)
T TIGR02038        77 QGLGSGVIMSKEGYILTNYHVIKKA-----DQIVVALQD--------GRKFEAELVGSDPL-------TDLAVLKIEGDN  136 (351)
T ss_pred             cceEEEEEEeCCeEEEecccEeCCC-----CEEEEEECC--------CCEEEEEEEEecCC-------CCEEEEEecCCC
Confidence            346999999976 999999999651     234555421        22344444444444       699999997542


Q ss_pred             CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccC
Q psy2626         218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS  297 (355)
Q Consensus       218 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~  297 (355)
                           +.++-|-...    ....++..++.|+....     ........+....+.    .+..   .-....+=     
T Consensus       137 -----~~~~~l~~s~----~~~~G~~V~aiG~P~~~-----~~s~t~GiIs~~~r~----~~~~---~~~~~~iq-----  190 (351)
T TIGR02038       137 -----LPTIPVNLDR----PPHVGDVVLAIGNPYNL-----GQTITQGIISATGRN----GLSS---VGRQNFIQ-----  190 (351)
T ss_pred             -----CceEeccCcC----ccCCCCEEEEEeCCCCC-----CCcEEEEEEEeccCc----ccCC---CCcceEEE-----
Confidence                 2233332221    35678888888886421     111222222221110    0000   00001111     


Q ss_pred             CCCCCCcCCCCCcceeeeCCeEEEEEEEEeC
Q psy2626         298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG  328 (355)
Q Consensus       298 ~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g  328 (355)
                      .+...-.|.|||||+-..+   .++||.+..
T Consensus       191 tda~i~~GnSGGpl~n~~G---~vIGI~~~~  218 (351)
T TIGR02038       191 TDAAINAGNSGGALINTNG---ELVGINTAS  218 (351)
T ss_pred             ECCccCCCCCcceEECCCC---eEEEEEeee
Confidence            1345567999999996544   699998764

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=98.20  E-value=8.1e-05  Score=69.86  Aligned_cols=141  Identities=19%  Similarity=0.247  Sum_probs=76.7

Q ss_pred             eeeeEEEEeCC-EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCC
Q psy2626         140 WMCGGALITKR-YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAP  218 (355)
Q Consensus       140 ~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~  218 (355)
                      ..-+|.+|+++ +|||+||=+.+.     ..+.|.+..        ...+..+-+..+|.       +||||||++.. .
T Consensus        78 ~~GSGfvi~~~G~IlTn~HVv~~a-----~~i~V~~~d--------g~~~~a~vv~~d~~-------~DlAvl~v~~~-~  136 (353)
T PRK10898         78 TLGSGVIMDQRGYILTNKHVINDA-----DQIIVALQD--------GRVFEALLVGSDSL-------TDLAVLKINAT-N  136 (353)
T ss_pred             ceeeEEEEeCCeEEEecccEeCCC-----CEEEEEeCC--------CCEEEEEEEEEcCC-------CCEEEEEEcCC-C
Confidence            57999999976 999999998651     235555532        22344444444444       79999999753 1


Q ss_pred             CCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCC
Q psy2626         219 LSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSG  298 (355)
Q Consensus       219 ~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~  298 (355)
                          +.++-|....    ....++..++.|+.....     .......+.-..+.    .....+   ....+=     .
T Consensus       137 ----l~~~~l~~~~----~~~~G~~V~aiG~P~g~~-----~~~t~Giis~~~r~----~~~~~~---~~~~iq-----t  191 (353)
T PRK10898        137 ----LPVIPINPKR----VPHIGDVVLAIGNPYNLG-----QTITQGIISATGRI----GLSPTG---RQNFLQ-----T  191 (353)
T ss_pred             ----CCeeeccCcC----cCCCCCEEEEEeCCCCcC-----CCcceeEEEecccc----ccCCcc---ccceEE-----e
Confidence                2233332221    345678888888753211     11111111111110    000000   001111     1


Q ss_pred             CCCCCcCCCCCcceeeeCCeEEEEEEEEeCC
Q psy2626         299 GKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK  329 (355)
Q Consensus       299 ~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~  329 (355)
                      +...-.|.|||||+-..+   .++||.+...
T Consensus       192 da~i~~GnSGGPl~n~~G---~vvGI~~~~~  219 (353)
T PRK10898        192 DASINHGNSGGALVNSLG---ELMGINTLSF  219 (353)
T ss_pred             ccccCCCCCcceEECCCC---eEEEEEEEEe
Confidence            345567999999996543   6999988643

>PRK10139 serine endoprotease; Provisional

Probab=98.13  E-value=5.1e-05  Score=73.53  Aligned_cols=141  Identities=18%  Similarity=0.245  Sum_probs=79.8

Q ss_pred             eeeeEEEEeC--CEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCC
Q psy2626         140 WMCGGALITK--RYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDA  217 (355)
Q Consensus       140 ~~C~GtLIs~--~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v  217 (355)
                      ...+|.+|++  -||||++|.+.+.     ..+.|++..        ...+..+-+-..|.       .||||||++.+-
T Consensus        90 ~~GSG~ii~~~~g~IlTn~HVv~~a-----~~i~V~~~d--------g~~~~a~vvg~D~~-------~DlAvlkv~~~~  149 (455)
T PRK10139         90 GLGSGVIIDAAKGYVLTNNHVINQA-----QKISIQLND--------GREFDAKLIGSDDQ-------SDIALLQIQNPS  149 (455)
T ss_pred             ceEEEEEEECCCCEEEeChHHhCCC-----CEEEEEECC--------CCEEEEEEEEEcCC-------CCEEEEEecCCC
Confidence            5799999974  6999999999752     345666532        22444444444444       799999998542


Q ss_pred             CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccC
Q psy2626         218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS  297 (355)
Q Consensus       218 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~  297 (355)
                          .+.++.|....    ....++..++.|+....     ...   +..-+++...  ....... . ....+=.    
T Consensus       150 ----~l~~~~lg~s~----~~~~G~~V~aiG~P~g~-----~~t---vt~GivS~~~--r~~~~~~-~-~~~~iqt----  205 (455)
T PRK10139        150 ----KLTQIAIADSD----KLRVGDFAVAVGNPFGL-----GQT---ATSGIISALG--RSGLNLE-G-LENFIQT----  205 (455)
T ss_pred             ----CCceeEecCcc----ccCCCCEEEEEecCCCC-----CCc---eEEEEEcccc--ccccCCC-C-cceEEEE----
Confidence                23455554332    34568888888874321     111   2222332110  0000000 0 0111111    


Q ss_pred             CCCCCCcCCCCCcceeeeCCeEEEEEEEEeC
Q psy2626         298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG  328 (355)
Q Consensus       298 ~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g  328 (355)
                       +...-.|.|||||+-..+   .++||.+..
T Consensus       206 -da~in~GnSGGpl~n~~G---~vIGi~~~~  232 (455)
T PRK10139        206 -DASINRGNSGGALLNLNG---ELIGINTAI  232 (455)
T ss_pred             -CCccCCCCCcceEECCCC---eEEEEEEEE
Confidence             345568999999996544   699999864

>PRK10942 serine endoprotease; Provisional

Probab=97.99  E-value=0.00013  Score=71.15  Aligned_cols=141  Identities=19%  Similarity=0.223  Sum_probs=76.9

Q ss_pred             eeeeEEEEeC--CEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCC
Q psy2626         140 WMCGGALITK--RYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDA  217 (355)
Q Consensus       140 ~~C~GtLIs~--~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v  217 (355)
                      ...+|.+|++  .+|||++|.+.+.     ..+.|.+..        ...+..+-+..+|.       .||||||++.+-
T Consensus       111 ~~GSG~ii~~~~G~IlTn~HVv~~a-----~~i~V~~~d--------g~~~~a~vv~~D~~-------~DlAvlki~~~~  170 (473)
T PRK10942        111 ALGSGVIIDADKGYVVTNNHVVDNA-----TKIKVQLSD--------GRKFDAKVVGKDPR-------SDIALIQLQNPK  170 (473)
T ss_pred             ceEEEEEEECCCCEEEeChhhcCCC-----CEEEEEECC--------CCEEEEEEEEecCC-------CCEEEEEecCCC
Confidence            4799999985  5999999998751     345566532        22344444444544       799999997432


Q ss_pred             CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccC
Q psy2626         218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS  297 (355)
Q Consensus       218 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~  297 (355)
                      .    +.++-|-...    ....++.+++.|+....     ........+.-+.+.    ...   ..-...++=.    
T Consensus       171 ~----l~~~~lg~s~----~l~~G~~V~aiG~P~g~-----~~tvt~GiVs~~~r~----~~~---~~~~~~~iqt----  226 (473)
T PRK10942        171 N----LTAIKMADSD----ALRVGDYTVAIGNPYGL-----GETVTSGIVSALGRS----GLN---VENYENFIQT----  226 (473)
T ss_pred             C----CceeEecCcc----ccCCCCEEEEEcCCCCC-----CcceeEEEEEEeecc----cCC---cccccceEEe----
Confidence            2    3345554322    34567777777763211     111111122211110    000   0000111111    


Q ss_pred             CCCCCCcCCCCCcceeeeCCeEEEEEEEEeC
Q psy2626         298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG  328 (355)
Q Consensus       298 ~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g  328 (355)
                       +...-.|.|||||+...+   .++||.+..
T Consensus       227 -da~i~~GnSGGpL~n~~G---eviGI~t~~  253 (473)
T PRK10942        227 -DAAINRGNSGGALVNLNG---ELIGINTAI  253 (473)
T ss_pred             -ccccCCCCCcCccCCCCC---eEEEEEEEE
Confidence             334557999999996544   699998753

>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.17  E-value=0.0021  Score=65.68  Aligned_cols=66  Identities=17%  Similarity=0.136  Sum_probs=40.9

Q ss_pred             eEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCC
Q psy2626         143 GGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL  222 (355)
Q Consensus       143 ~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~  222 (355)
                      .+|||+|+||+|++|=...       ...|.+|.+..      ..+.+..--.|+.       .|+.+-||.+=|.   -
T Consensus        68 ~aTLigpqYiVSV~HN~~g-------y~~v~FG~~g~------~~Y~iV~RNn~~~-------~Df~~pRLnK~VT---E  124 (769)
T PF02395_consen   68 VATLIGPQYIVSVKHNGKG-------YNSVSFGNEGQ------NTYKIVDRNNYPS-------GDFHMPRLNKFVT---E  124 (769)
T ss_dssp             S-EEEETTEEEBETTG-TS-------CCEECESCSST------CEEEEEEEEBETT-------STEBEEEESS------S
T ss_pred             eEEEecCCeEEEEEccCCC-------cCceeecccCC------ceEEEEEccCCCC-------cccceeecCceEE---E
Confidence            4999999999999998632       23577776443      3566666666655       5999999998775   3


Q ss_pred             ccccccCCC
Q psy2626         223 IQPICLPYD  231 (355)
Q Consensus       223 v~picLp~~  231 (355)
                      +.|+-+...
T Consensus       125 vaP~~~t~~  133 (769)
T PF02395_consen  125 VAPAEMTTA  133 (769)
T ss_dssp             S----BBSS
T ss_pred             Eeccccccc
Confidence            667666544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.

>PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification

Probab=89.17  E-value=1.6  Score=38.27  Aligned_cols=40  Identities=25%  Similarity=0.408  Sum_probs=22.4

Q ss_pred             CCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcc
Q psy2626         301 DSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN  345 (355)
Q Consensus       301 ~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~  345 (355)
                      ++=.||=|.||+...++  .+|||.|.+..-..   -..|+.+..
T Consensus       147 sTk~G~CG~PlVs~~Dg--~IVGiHsl~~~~~~---~N~F~~f~~  186 (235)
T PF00863_consen  147 STKDGDCGLPLVSTKDG--KIVGIHSLTSNTSS---RNYFTPFPD  186 (235)
T ss_dssp             ---TT-TT-EEEETTT----EEEEEEEEETTTS---SEEEEE--T
T ss_pred             cCCCCccCCcEEEcCCC--cEEEEEcCccCCCC---eEEEEcCCH
Confidence            34458889999986654  59999998755332   246777654

; InterPro: IPR001730 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. Nuclear inclusion A (NIA) proteases from potyviruses are cysteine peptidases belong to the MEROPS peptidase family C4 (NIa protease family, clan PA(C)) [, ]. Potyviruses include plant viruses in which the single-stranded RNA encodes a polyprotein with NIA protease activity, where proteolytic cleavage is specific for Gln+Gly sites. The NIA protease acts on the polyprotein, releasing itself by Gln+Gly cleavage at both the N- and C-termini. It further processes the polyprotein by cleavage at five similar sites in the C-terminal half of the sequence. In addition to its C-terminal protease activity, the NIA protease contains an N-terminal domain that has been implicated in the transcription process []. This peptidase is present in the nuclear inclusion protein of potyviruses.; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MMG_B 1Q31_B 1LVB_A 1LVM_A.

>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.60  E-value=0.27  Score=38.32  Aligned_cols=39  Identities=28%  Similarity=0.609  Sum_probs=29.2

Q ss_pred             CcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHH
Q psy2626         303 CGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIA  351 (355)
Q Consensus       303 C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~  351 (355)
                      =.||-||+|.|+.+    ++||++.|..    + -..|++|..+ .|++
T Consensus        88 ~PGdCGg~L~C~HG----ViGi~Tagg~----g-~VaF~dir~~-~~~e  126 (127)
T PF00947_consen   88 EPGDCGGILRCKHG----VIGIVTAGGE----G-HVAFADIRDL-LWLE  126 (127)
T ss_dssp             STT-TCSEEEETTC----EEEEEEEEET----T-EEEEEECCCG-STTS
T ss_pred             CCCCCCceeEeCCC----eEEEEEeCCC----c-eEEEEechhh-heec
Confidence            36999999999998    9999998733    2 3569999886 4543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.

>PF00548 Peptidase_C3: 3C cysteine protease (picornain 3C); InterPro: IPR000199 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.11  E-value=4.2  Score=34.00  Aligned_cols=147  Identities=16%  Similarity=0.181  Sum_probs=72.4

Q ss_pred             CceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCC
Q psy2626         138 PEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDA  217 (355)
Q Consensus       138 ~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v  217 (355)
                      ..+.+.|..|..+|.|--.|.-.        ...+.++.         ..+.+...+..  .+......||+|++|++.-
T Consensus        23 g~~t~l~~gi~~~~~lvp~H~~~--------~~~i~i~g---------~~~~~~d~~~l--v~~~~~~~Dl~~v~l~~~~   83 (172)
T PF00548_consen   23 GEFTMLALGIYDRYFLVPTHEEP--------EDTIYIDG---------VEYKVDDSVVL--VDRDGVDTDLTLVKLPRNP   83 (172)
T ss_dssp             EEEEEEEEEEEBTEEEEEGGGGG--------CSEEEETT---------EEEEEEEEEEE--EETTSSEEEEEEEEEESSS
T ss_pred             ceEEEecceEeeeEEEEECcCCC--------cEEEEECC---------EEEEeeeeEEE--ecCCCcceeEEEEEccCCc
Confidence            35778899999999999999221        12233321         22333332221  1122223699999999888


Q ss_pred             CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeE--Eecc
Q psy2626         218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENIL--CAGV  295 (355)
Q Consensus       218 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~--Ca~~  295 (355)
                      .|.+-.+-+.-        .......+..+-|...     .....  ..+..+.....-        ..+...+  +..+
T Consensus        84 kfrDIrk~~~~--------~~~~~~~~~l~v~~~~-----~~~~~--~~v~~v~~~~~i--------~~~g~~~~~~~~Y  140 (172)
T PF00548_consen   84 KFRDIRKFFPE--------SIPEYPECVLLVNSTK-----FPRMI--VEVGFVTNFGFI--------NLSGTTTPRSLKY  140 (172)
T ss_dssp             -B--GGGGSBS--------SGGTEEEEEEEEESSS-----STCEE--EEEEEEEEEEEE--------EETTEEEEEEEEE
T ss_pred             ccCchhhhhcc--------ccccCCCcEEEEECCC-----CccEE--EEEEEEeecCcc--------ccCCCEeeEEEEE
Confidence            88665555541        1112223333334211     11111  111111000000        0001111  1111


Q ss_pred             cCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC
Q psy2626         296 LSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK  329 (355)
Q Consensus       296 ~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~  329 (355)
                         ...+-.|+=||||+...++...++||...|.
T Consensus       141 ---~~~t~~G~CG~~l~~~~~~~~~i~GiHvaG~  171 (172)
T PF00548_consen  141 ---KAPTKPGMCGSPLVSRIGGQGKIIGIHVAGN  171 (172)
T ss_dssp             ---ESEEETTGTTEEEEESCGGTTEEEEEEEEEE
T ss_pred             ---ccCCCCCccCCeEEEeeccCccEEEEEeccC
Confidence               2334568999999997777889999998764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This signature defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies C3A and C3B. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral C3 cysteine protease. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SJO_E 2H6M_A 1QA7_C 1HAV_B 2HAL_A 2H9H_A 3QZQ_B 3QZR_A 3R0F_B 3SJ9_A ....

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=82.78  E-value=29  Score=32.46  Aligned_cols=58  Identities=17%  Similarity=0.333  Sum_probs=37.3

Q ss_pred             eeeeEEEEe-CCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCC
Q psy2626         140 WMCGGALIT-KRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDA  217 (355)
Q Consensus       140 ~~C~GtLIs-~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v  217 (355)
                      ...+|.+|+ ..+|||..|=+..     .....|.+        .....+..+-+-..+       ..|+|+||.+..-
T Consensus        72 ~~gSg~i~~~~g~ivTn~hVi~~-----a~~i~v~l--------~dg~~~~a~~vg~d~-------~~dlavlki~~~~  130 (347)
T COG0265          72 GLGSGFIISSDGYIVTNNHVIAG-----AEEITVTL--------ADGREVPAKLVGKDP-------ISDLAVLKIDGAG  130 (347)
T ss_pred             ccccEEEEcCCeEEEecceecCC-----cceEEEEe--------CCCCEEEEEEEecCC-------ccCEEEEEeccCC
Confidence            568899998 7899999998764     13444554        122334444443333       2799999998643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	355
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		4e-32
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		2e-29
2any_A	241	Expression, Crystallization And The Three-Dimension		2e-29
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		3e-29
2anw_A	241	Expression, Crystallization And Three-Dimensional S		4e-29
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		5e-29
1pyt_D	251	Ternary Complex Of Procarboxypeptidase A, Proprotei		9e-29
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		1e-28
2bok_A	241	Factor Xa- Cation Length = 241		2e-28
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		2e-28
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		2e-28
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		2e-28
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		2e-28
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		2e-28
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		2e-28
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		2e-28
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		2e-28
1kig_H	241	Bovine Factor Xa Length = 241		2e-28
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		3e-28
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		3e-28
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		3e-28
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		3e-28
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		2e-27
1aut_C	250	Human Activated Protein C Length = 250		3e-27
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		3e-27
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		3e-27
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		4e-27
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		4e-27
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		5e-27
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		5e-27
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		5e-27
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		5e-27
1pfx_C	235	Porcine Factor Ixa Length = 235		6e-26
4h4f_A	249	Crystal Structure Of Human Chymotrypsin C (ctrc) Bo		1e-25
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		2e-25
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		3e-25
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		3e-25
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		5e-25
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		5e-25
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		6e-25
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		9e-25
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		1e-24
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		1e-24
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		2e-24
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		2e-24
2oq5_A	232	Crystal Structure Of Desc1, A New Member Of The Typ		3e-24
1a5i_A	265	Catalytic Domain Of Vampire Bat (Desmodus Rotundus)		3e-24
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		4e-24
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		4e-24
1a0l_A	244	Human Beta-Tryptase: A Ring-Like Tetramer With Acti		6e-24
2bm2_A	245	Human Beta-Ii Tryptase In Complex With 4-(3-Aminome		6e-24
2zeb_A	243	Potent, Nonpeptide Inhibitors Of Human Mast Cell Tr		6e-24
2f91_A	237	1.2a Resolution Structure Of A Crayfish Trypsin Com		1e-23
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		2e-23
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		2e-23
2vnt_A	276	Urokinase-Type Plasminogen Activator Inhibitor Comp		3e-23
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		5e-23
1lto_A	245	Human Alpha1-Tryptase Length = 245		5e-23
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		5e-23
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		8e-23
1bru_P	241	Structure Of Porcine Pancreatic Elastase Complexed		8e-23
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		1e-22
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		1e-22
1fiz_A	263	Three Dimensional Structure Of Beta-Acrosin From Bo		1e-22
1sc8_U	262	Urokinase Plasminogen Activator B-Chain-J435 Comple		2e-22
2xrc_A	565	Human Complement Factor I Length = 565		3e-22
1gj7_B	253	Engineering Inhibitors Highly Selective For The S1		3e-22
1gi8_B	245	A Novel Serine Protease Inhibition Motif Involving		3e-22
1o5a_B	253	Dissecting And Designing Inhibitor Selectivity Dete		3e-22
3ig6_B	253	Low Molecular Weigth Human Urokinase Type Plasminog		3e-22
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		3e-22
1owe_A	245	Substituted 2-Naphthamidine Inhibitors Of Urokinase		5e-22
1owd_A	245	Substituted 2-naphthamidine Inhibitors Of Urokinase		6e-22
1lmw_B	253	Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-A		6e-22
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		8e-22
3bn9_B	241	Crystal Structure Of Mt-Sp1 In Complex With Fab Inh		1e-21
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		1e-21
2b9l_A	394	Crystal Structure Of Prophenoloxidase Activating Fa		2e-21
1q3x_A	328	Crystal Structure Of The Catalytic Region Of Human		2e-21
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		2e-21
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		2e-21
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		2e-21
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		2e-21
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		2e-21
2nwn_A	253	New Pharmacophore For Serine Protease Inhibition Re		3e-21
4fu7_A	246	Crystal Structure Of The Urokinase Length = 246		3e-21
2o8u_A	253	Crystal Structure And Binding Epitopes Of Urokinase		3e-21
1rtf_B	252	Complex Of Benzamidine With The Catalytic Domain Of		4e-21
1w0z_U	247	Urokinase Type Plasminogen Activator Length = 247		4e-21
1fiw_A	290	Three-Dimensional Structure Of Beta-Acrosin From Ra		4e-21
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		4e-21
3mwi_U	246	The Complex Crystal Structure Of Urokianse And 5-Ni		4e-21
1ejn_A	253	Urokinase Plasminogen Activator B-Chain Inhibitor C		5e-21
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		5e-21
1zjk_A	403	Crystal Structure Of The Zymogen Catalytic Region O		6e-21
1fv9_A	245	Crystal Structure Of Human Microurokinase In Comple		7e-21
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		9e-21
1elt_A	236	Structure Of Native Pancreatic Elastase From North		1e-20
2qxg_A	224	Crystal Structure Of Human Kallikrein 7 In Complex		3e-20
3bsq_A	227	Crystal Structure Of Human Kallikrein 7 Produced As		4e-20
2pux_B	258	Crystal Structure Of Murine Thrombin In Complex Wit		5e-20
2wub_A	257	Crystal Structure Of Hgfa In Complex With The Allos		5e-20
2r0l_A	248	Short Form Hgfa With Inhibitory Fab75 Length = 248		5e-20
2ocv_B	259	Structural Basis Of Na+ Activation Mimicry In Murin		9e-20
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		1e-19
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		1e-19
3qk1_A	229	Crystal Structure Of Enterokinase-Like Trypsin Vari		1e-19
1pyt_C	253	Ternary Complex Of Procarboxypeptidase A, Proprotei		2e-19
1euf_A	227	Bovine Duodenase(New Serine Protease), Crystal Stru		2e-19
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		2e-19
3edx_B	258	Crystal Structure Of The W215aE217A MUTANT OF MURIN		3e-19
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		3e-19
1hax_B	240	Snapshots Of Serine Protease Catalysis: (A) Acyl-En		4e-19
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		5e-19
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		5e-19
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		5e-19
2est_E	240	Crystallographic Study Of The Binding Of A Trifluor		5e-19
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		5e-19
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		6e-19
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		6e-19
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		6e-19
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		6e-19
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		6e-19
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		6e-19
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		6e-19
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		6e-19
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		7e-19
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		7e-19
1eai_A	240	Complex Of Ascaris Chymotrpsin/elastase Inhibitor W		7e-19
3tvj_B	242	Catalytic Fragment Of Masp-2 In Complex With Its Sp		7e-19
4fxg_H	242	Complement C4 In Complex With Masp-2 Length = 242		8e-19
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		8e-19
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		8e-19
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		1e-18
2d8w_A	223	Structure Of Hyper-Vil-Trypsin Length = 223		1e-18
3gov_B	251	Crystal Structure Of The Catalytic Region Of Human		1e-18
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		1e-18
1y59_T	223	Dianhydrosugar-Based Benzamidine, Factor Xa Specifi		1e-18
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		1e-18
1gdu_A	224	Fusarium Oxysporum Trypsin At Atomic Resolution Len		2e-18
1tgs_Z	229	Three-Dimensional Structure Of The Complex Between		2e-18
3otj_E	223	A Crystal Structure Of Trypsin Complexed With Bpti		2e-18
1tab_E	223	Structure Of The Trypsin-Binding Domain Of Bowman-B		2e-18
1g3b_A	228	Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Ba		2e-18
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		2e-18
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		2e-18
1ppz_A	224	Trypsin Complexes At Atomic And Ultra-High Resoluti		2e-18
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		2e-18
5ptp_A	223	Structure Of Hydrolase (Serine Proteinase) Length =		2e-18
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		2e-18
1l2e_A	223	Human Kallikrein 6 (Hk6) Active Form With Benzamidi		2e-18
2fi4_E	223	Crystal Structure Of A Bpti Variant (Cys14->ser) In		2e-18
3veq_B	223	A Binary Complex Betwwen Bovine Pancreatic Trypsin		2e-18
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		2e-18
1zzz_A	237	Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes		2e-18
1taw_A	223	Bovine Trypsin Complexed To Appi Length = 223		2e-18
3rp2_A	224	The Structure Of Rat Mast Cell Protease Ii At 1.9-A		3e-18
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		3e-18
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		3e-18
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		3e-18
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		3e-18
1oph_B	243	Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh		3e-18
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		3e-18
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		3e-18
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		3e-18
1f0t_A	243	Bovine Trypsin Complexed With Rpr131247 Length = 24		3e-18
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		3e-18
1z8j_B	259	Crystal Structure Of The Thrombin Mutant G193p Boun		3e-18
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		4e-18
1ntp_A	223	Use Of The Neutron Diffraction HD EXCHANGE TECHNIQU		4e-18
3i77_A	230	3599170-Loops Of Fxa In Sgt Length = 230		4e-18
1fon_A	240	Crystal Structure Of Bovine Procarboxypeptidase A-S		4e-18
1xvm_A	224	Trypsin From Fusarium Oxysporum- Room Temperature T		5e-18
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		5e-18
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		6e-18
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		7e-18
1ym0_A	238	Crystal Structure Of Earthworm Fibrinolytic Enzyme		7e-18
2ftm_A	224	Crystal Structure Of A Bpti Variant (Cys38->ser) In		8e-18
1gvl_A	223	Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M P		9e-18
1elv_A	333	Crystal Structure Of The Catalytic Domain Of Human		1e-17
1eq9_A	222	Crystal Structure Of Fire Ant Chymotrypsin Complexe		1e-17
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		1e-17
3i78_A	229	3599170186220-Loops Of Fxa In Sgt Length = 229		1e-17
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		2e-17
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		2e-17
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		2e-17
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		2e-17
1mct_A	223	The Refined 1.6 Angstroms Resolution Crystal Struct		2e-17
2pgb_B	259	Inhibitor-Free Human Thrombin Mutant C191a-C220a Le		2e-17
4d8n_A	223	Human Kallikrein 6 Inhibitors With A Para-Amidobenz		2e-17
2a31_A	223	Trypsin In Complex With Borate Length = 223		7e-17
4an7_A	231	Kunitz Type Trypsin Inhibitor Complex With Porcine		7e-17
1tfx_A	223	Complex Of The Second Kunitz Domain Of Tissue Facto		7e-17
1md8_A	329	Monomeric Structure Of The Active Catalytic Domain		8e-17
1md7_A	328	Monomeric Structure Of The Zymogen Of Complement Pr		8e-17
2tbs_A	222	Cold-Adaption Of Enzymes: Structural Comparison Bet		9e-17
1os8_A	223	Recombinant Streptomyces Griseus Trypsin Length = 2		9e-17
1bzx_E	222	The Crystal Structure Of Anionic Salmon Trypsin In		9e-17
1hj8_A	222	1.00 Aa Trypsin From Atlantic Salmon Length = 222		1e-16
1an1_E	223	Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Len		1e-16
3myw_A	223	The Bowman-Birk Type Inhibitor From Mung Bean In Te		1e-16
1trn_A	224	Crystal Structure Of Human Trypsin 1: Unexpected Ph		1e-16
1bit_A	237	The Crystal Structure Of Anionic Salmon Trypsin In		1e-16
1fi8_A	228	Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Ie		2e-16
1utj_A	242	Trypsin Specificity As Elucidated By Lie Calculatio		2e-16
1oss_A	223	T190p Streptomyces Griseus Trypsin In Complex With		2e-16
2zpr_A	222	Crystal Structure Of Anionic Trypsin Isoform 2 From		2e-16
1mbq_A	220	Anionic Trypsin From Pacific Chum Salmon Length = 2		2e-16
1gpz_A	399	The Crystal Structure Of The Zymogen Catalytic Doma		2e-16
1sgt_A	223	Refined Crystal Structure Of Streptomyces Griseus T		2e-16
2ra3_A	224	Human Cationic Trypsin Complexed With Bovine Pancre		2e-16
1klt_A	226	Crystal Structure Of Pmsf-Treated Human Chymase At		2e-16
1hyl_A	230	The 1.8 A Structure Of Collagenase From Hypoderma L		2e-16
1hj9_A	223	Atomic Resolution Structures Of Trypsin Provide Ins		3e-16
2zps_A	222	Crystal Structure Of Anionic Trypsin Isoform 3 From		3e-16
2zpq_A	222	Crystal Structure Of Anionic Trypsin Isoform 1 From		3e-16
2tld_E	220	Crystal Structure Of An Engineered Subtilisin Inhib		3e-16
2fmj_A	222	220-Loop Mutant Of Streptomyces Griseus Trypsin Len		4e-16
1pjp_A	226	The 2.2 A Crystal Structure Of Human Chymase In Com		4e-16
1dst_A	228	Mutant Of Factor D With Enhanced Catalytic Activity		4e-16
1mza_A	240	Crystal Structure Of Human Pro-Granzyme K Length =		4e-16
1a0j_A	223	Crystal Structure Of A Non-Psychrophilic Trypsin Fr		4e-16
3n7o_A	226	X-Ray Structure Of Human Chymase In Complex With Sm		6e-16
3beu_A	224	Na+-Dependent Allostery Mediates Coagulation Factor		8e-16
4afq_A	226	Human Chymase - Fynomer Complex Length = 226		9e-16
1nn6_A	228	Human Pro-Chymase Length = 228		9e-16
1v2u_T	223	Benzamidine In Complex With Bovine Trypsin Varinat		1e-15
4gaw_A	226	Crystal Structure Of Active Human Granzyme H Length		1e-15
1v2o_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		1e-15
1sgf_G	237	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		2e-15
1v2k_T	223	Factor Xa Specific Inhibitor In Complex With Bovine		2e-15
4b2a_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		2e-15
1fq3_A	227	Crystal Structure Of Human Granzyme B Length = 227		3e-15
4b1t_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		3e-15
1v2n_T	223	Potent Factor Xa Inhibitor In Complex With Bovine T		3e-15
1iau_A	227	Human Granzyme B In Complex With Ac-Iepd-Cho Length		3e-15
1v2s_T	223	Benzamidine In Complex With Bovine Trypsin Variant		3e-15
3pwb_A	223	Bovine Trypsin Variant X(Tripleglu217ile227) In Com		4e-15
1fdp_A	235	Proenzyme Of Human Complement Factor D, Recombinant		4e-15
1v2q_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		4e-15
3tju_A	226	Crystal Structure Of Human Granzyme H With An Inhib		4e-15
1v2j_T	223	Benzamidine In Complex With Bovine Trypsin Variant		4e-15
4dg4_A	224	Human Mesotrypsin-S39y Complexed With Bovine Pancre		4e-15
4d9q_A	228	Inhibiting Alternative Pathway Complement Activatio		5e-15
3pmj_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		5e-15
2zch_P	237	Crystal Structure Of Human Prostate Specific Antige		5e-15
2r9p_A	224	Human Mesotrypsin Complexed With Bovine Pancreatic		5e-15
2qy0_B	242	Active Dimeric Structure Of The Catalytic Domain Of		7e-15
3fzz_A	227	Structure Of Grc Length = 227		8e-15
3plk_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		8e-15
4b2b_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		8e-15
3g01_A	227	Structure Of Grc Mutant E192rE193G Length = 227		9e-15
1h4w_A	224	Structure Of Human Trypsin Iv (Brain Trypsin) Lengt		9e-15
4b2c_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		1e-14
3uqv_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		1e-14
3uns_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		1e-14
2xw9_A	228	Crystal Structure Of Complement Factor D Mutant S18		1e-14
1si5_H	240	Protease-Like Domain From 2-Chain Hepatocyte Growth		1e-14
1shy_A	234	The Crystal Structure Of Hgf Beta-Chain In Complex		1e-14
1dsu_A	228	Human Factor D, Complement Activating Enzyme Length		2e-14
4f4o_C	347	Structure Of The Haptoglobin-Haemoglobin Complex Le		2e-14
1azz_A	226	Fiddler Crab Collagenase Complexed To Ecotin Length		2e-14
1m9u_A	241	Crystal Structure Of Earthworm Fibrinolytic Enzyme		2e-14
3tgj_E	233	S195a Trypsinogen Complexed With Bovine Pancreatic		2e-14
3unq_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		2e-14
1co7_E	245	R117h Mutant Rat Anionic Trypsin Complexed With Bov		3e-14
2eek_A	220	Crystal Structure Of Atlantic Cod Trypsin Complexed		3e-14
3uwi_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		3e-14
2xwa_A	228	Crystal Structure Of Complement Factor D Mutant R20		3e-14
1amh_A	223	Uncomplexed Rat Trypsin Mutant With Asp 189 Replace		4e-14
1and_A	223	Anionic Trypsin Mutant With Arg 96 Replaced By His		4e-14
3tgk_E	231	Trypsinogen Mutant D194n And Deletion Of Ile 16-Val		4e-14
3v0x_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		4e-14
1fy8_E	231	Crystal Structure Of The Deltaile16val17 Rat Anioni		4e-14
1k9o_E	223	Crystal Structure Of Michaelis Serpin-Trypsin Compl		4e-14
3tgi_E	223	Wild-Type Rat Anionic Trypsin Complexed With Bovine		4e-14
1f5r_A	231	Rat Trypsinogen Mutant Complexed With Bovine Pancre		4e-14
1ql9_A	223	Factor Xa Specific Inhibitor In Complex With Rat Tr		4e-14
1f7z_A	233	Rat Trypsinogen K15a Complexed With Bovine Pancreat		5e-14
1slw_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		6e-14
1dpo_A	223	Structure Of Rat Trypsin Length = 223		6e-14
1ao5_A	237	Mouse Glandular Kallikrein-13 (Prorenin Converting		7e-14
1slx_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		8e-14
1anb_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Glu		1e-13
1anc_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Lys		1e-13
1npm_A	225	Neuropsin, A Serine Protease Expressed In The Limbi		1e-13
1ezs_C	223	Crystal Structure Of Ecotin Mutant M84r, W67a, G68a		1e-13
1trm_A	223	The Three-Dimensional Structure Of Asn102 Mutant Of		2e-13
1orf_A	234	The Oligomeric Structure Of Human Granzyme A Reveal		2e-13
1sgf_A	240	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		2e-13
1op8_A	234	Crystal Structure Of Human Granzyme A Length = 234		2e-13
1j15_A	223	Benzamidine In Complex With Rat Trypsin Mutant X991		3e-13
1h9h_E	231	Complex Of Eeti-Ii With Porcine Trypsin Length = 23		3e-13
1brb_E	223	Crystal Structures Of Rat Anionic Trypsin Complexed		3e-13
1spj_A	238	Structure Of Mature Human Tissue Kallikrein (Human		9e-13
2bdg_A	223	Human Kallikrein 4 Complex With Nickel And P-aminob		2e-12
2zgc_A	240	Crystal Structure Of Active Human Granzyme M Length		4e-12
3h7o_A	228	Crystal Structure Of Scabies Mite Inactivated Prote		4e-12
1fy3_A	225	[g175q]hbp, A Mutant Of Human Heparin Binding Prote		1e-11
1a7s_A	225	Atomic Resolution Structure Of Hbp Length = 225		1e-11
2zgj_A	240	Crystal Structure Of D86n-gzmm Complexed With Its O		1e-11
1fy1_A	225	[r23s,F25e]hbp, A Mutant Of Human Heparin Binding P		2e-11
1kyn_B	235	Cathepsin-G Length = 235		4e-11
1au8_A	224	Human Cathepsin G Length = 224		4e-11
4gso_A	232	Structure Of Jararacussin-I Length = 232		4e-11
1bqy_A	234	Plasminogen Activator (tsv-pa) From Snake Venom Len		4e-11
2rdl_A	226	Hamster Chymase 2 Length = 226		5e-11
1bhx_B	147	X-Ray Structure Of The Complex Of Human Alpha Throm		9e-11
1ton_A	235	Rat Submaxillary Gland Serine Protease, Tonin. Stru		1e-10
1mtn_B	131	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		2e-10
1bbr_H	150	The Structure Of Residues 7-16 Of The A Alpha Chain		2e-10
1gvz_A	237	Prostate Specific Antigen (Psa) From Stallion Semin		4e-10
2psx_A	227	Crystal Structure Of Human Kallikrein 5 In Complex		5e-10
2aip_A	231	Crystal Structure Of Native Protein C Activator Fro		1e-09
3h7t_A	235	Crystal Structure Of Scabies Mite Inactivated Prote		6e-09
4e7n_A	238	Crystal Structure Of Ahv_tl-I, A Glycosylated Snake		2e-08
1op2_A	234	Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snak		2e-07
2asu_B	234	Crystal Structure Of The Beta-Chain Of HgflMSP Leng		2e-07
2jet_B	128	Crystal Structure Of A Trypsin-Like Mutant (S189d,		2e-07
1op0_A	234	Crystal Structure Of Aav-sp-i, A Glycosylated Snake		2e-07
1kdq_A	131	Crystal Structure Analysis Of The Mutant S189d Rat		4e-07
1fuj_A	221	Pr3 (Myeloblastin) Length = 221		4e-07
2ikd_A	66	Solution Structure Of The First Clip Domain In Pap2		7e-07
3s9a_A	234	Russell's Viper Venom Serine Proteinase, Rvv-V (Clo		1e-06
1ept_C	98	Refined 1.8 Angstroms Resolution Crystal Structure		2e-06
2kai_B	152	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		3e-06
1uhb_B	98	Crystal Structure Of Porcine Alpha Trypsin Bound Wi		6e-06
3s69_A	234	Crystal Structure Of Saxthrombin Length = 234		1e-05
2i6q_A	517	Complement Component C2a Length = 517		1e-05
2odp_A	509	Complement Component C2a, The Catalytic Fragment Of		1e-05
1rrk_A	497	Crystal Structure Analysis Of The Bb Segment Of Fac		3e-05
2win_I	507	C3 Convertase (C3bbb) Stabilized By Scin Length = 5		3e-05
2xwb_F	732	Crystal Structure Of Complement C3b In Complex With		4e-05
3hrz_D	741	Cobra Venom Factor (Cvf) In Complex With Human Fact		4e-05
2ok5_A	752	Human Complement Factor B Length = 752		4e-05
1dle_A	298	Factor B Serine Protease Domain Length = 298		4e-05
1b0f_A	218	Crystal Structure Of Human Neutrophil Elastase With		9e-05
1hne_E	218	Structure Of Human Neutrophil Elastase In Complex W		1e-04
1aks_A	125	Crystal Structure Of The First Active Autolysate Fo		1e-04
1mtn_C	97	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		2e-04
1afq_C	96	Crystal Structure Of Bovine Gamma-Chymotrypsin Comp		2e-04
1ppf_E	218	X-Ray Crystal Structure Of The Complex Of Human Leu		2e-04
1ppg_E	218	The Refined 2.3 Angstroms Crystal Structure Of Huma		2e-04
2rg3_A	218	Covalent Complex Structure Of Elastase Length = 218		2e-04
2jet_C	99	Crystal Structure Of A Trypsin-Like Mutant (S189d,		6e-04
3h5c_B	317	X-Ray Structure Of Protein Z-Protein Z Inhibitor Co		7e-04

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 162/374 (43%), Gaps = 50/374 (13%)
Query: 4   YYDDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAV-----QYVKNSHCGLEGRLP 58
           Y DD  C+TP  + G C+    CR + + L   +   + V      Y++ + CG    + 
Sbjct: 28  YADD--CTTPDGDQGQCMPFSSCRTIEERLTEAQKAGQKVPADYASYLQKALCGEFNGVR 85
Query: 59  KVCCPQHTLTNDQXXXXXXXXXXXXGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQ 118
             CCP   + ++                  L   +N +CG N    S+R+  G   +   
Sbjct: 86  HFCCPSANIQHNSK-------------VMSLFKDENFDCG-NFL--SQRVSNGYEVKLSS 129
Query: 119 WPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSI 177
            PWMA +     R +  G+  ++CGGA+I++RY+LTAAHCV       YE  +  H  S 
Sbjct: 130 RPWMALL-----RYQQFGESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLGEHRIST 184
Query: 178 DLEDTSSG---------VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICL 228
           + +    G         V++ IE+ +IHE+Y +   ++DIAL +L    P    I+PICL
Sbjct: 185 EEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICL 244
Query: 229 PYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINE 288
           P    L+ +  +  T FV GWG+T   G  S  L    + +     C Q    Y   +  
Sbjct: 245 PITDELKEKAEQISTYFVTGWGTTE-NGSSSDVLLQANVPLQPRSACSQA---YRRAVPL 300
Query: 289 NILCAGVLXXXXXXXXXXXXXPLMYPLD------TKYYIIGVVSYG-KKCAEVGFPGVYT 341
           + LC G               PL  P         K    G+VS G   C ++  PG+YT
Sbjct: 301 SQLCVGG-GDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYT 359
Query: 342 RVTNYIQWIADNIS 355
            V  Y+QWI D ++
Sbjct: 360 NVGEYVQWITDTMA 373

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 17/249 (6%)
Query: 103 NSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPD 162
           N+  RIVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+   
Sbjct: 11  NNLTRIVGGQECKDGECPWQALL--------INEENEGFCGGTILSEFYILTAAHCLY-- 60
Query: 163 TTGEYEPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
              + + + V VG  + E    G ++ E+E  I H ++T      DIA+ RL+       
Sbjct: 61  ---QAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRM 117
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
            + P CLP      S L  +KT  V+G+G T  +G  S +L+ +++  VD   C+ + S+
Sbjct: 118 NVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCK-LSSS 176
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
           +   I +N+ CAG               P +      Y++ G+VS+G+ CA  G  G+YT
Sbjct: 177 F--IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYT 234
Query: 342 RVTNYIQWI 350
           +VT +++WI
Sbjct: 235 KVTAFLKWI 243

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 129/247 (52%), Gaps = 14/247 (5%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S  G+WPW  ++  K+  +R       +CGG+LI  ++VLTAAHC   D     
Sbjct: 1   IVGGTESSWGEWPWQVSLQVKLTAQRH------LCGGSLIGHQWVLTAAHCF--DGLPLQ 52
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + ++ G ++L D +      +I+  IIH+ Y  +   +DIAL +L+     ++  +PI
Sbjct: 53  DVWRIYSGILELSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPI 112
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP   +  S ++     +V GWG +  +G +   L+ V I +V N +C++ + +Y   I
Sbjct: 113 SLPSKGD-TSTIY--TNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDY--KI 167
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            + ++CAG               PL+   +  + ++G+ S+G+ CA    PGVYT+V  Y
Sbjct: 168 TQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEY 227
Query: 347 IQWIADN 353
           + WI + 
Sbjct: 228 MDWILEK 234

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 124/246 (50%), Gaps = 19/246 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG+ S  G WPW+ A+ F  ++         +CG +L+++ ++++AAHCV      E 
Sbjct: 1   IVGGSDSREGAWPWVVALYFDDQQ---------VCGASLVSRDWLVSAAHCVYGRNM-EP 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIE---IERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQ 224
             +   +G + +    +   IE   I++ +I+  Y   RK NDIA+  L      +D IQ
Sbjct: 51  SKWKAVLG-LHMASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQ 109
Query: 225 PICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
           PICLP +  +       +   +AGWG+ +++G  +  L+   + ++ N KC+Q    Y  
Sbjct: 110 PICLPEENQV---FPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEY-- 164
Query: 285 TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
            I EN++CAG               PLM   + ++ + GV S+G +CA    PGVY RV 
Sbjct: 165 NITENMVCAGYEAGGVDSCQGDSGGPLMCQENNRWLLAGVTSFGYQCALPNRPGVYARVP 224
Query: 345 NYIQWI 350
            + +WI
Sbjct: 225 RFTEWI 230

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 14/246 (5%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S  G+WPW  ++  K+  +R       +CGG+LI  ++VLTAAHC   D     
Sbjct: 1   IVGGTNSSWGEWPWQVSLQVKLTAQRH------LCGGSLIGHQWVLTAAHCF--DGLPLQ 52
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + ++ G ++L D +      +I+  IIH+ Y  +   +DIAL +L+     ++  +PI
Sbjct: 53  DVWRIYSGILNLSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPI 112
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP   +  S ++     +V GWG +  +G +   L+ V I +V N +C++ + +Y   I
Sbjct: 113 SLPSKGD-TSTIY--TNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDY--KI 167
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            + ++CAG               PL+   +  + ++G+ S+G+ CA    PGVYT+V  Y
Sbjct: 168 TQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEY 227
Query: 347 IQWIAD 352
           + WI +
Sbjct: 228 MDWILE 233

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 128/266 (48%), Gaps = 27/266 (10%)
Query: 94  NNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVL 153
           +NEC         RIVGGT S RG+WPW   +      +R       +CGG++I  +++L
Sbjct: 377 DNECTTKI---KPRIVGGTASVRGEWPWQVTLHTTSPTQRH------LCGGSIIGNQWIL 427
Query: 154 TAAHCVSPDTTGEYEPYIVHVGSIDL------EDTSSGVSIEIERPIIHEQYTSARKLND 207
           TAAHC      G   P I+ V S  L      EDTS      ++  IIH+QY  A    D
Sbjct: 428 TAAHCFY----GVESPKILRVYSGILNQSEIKEDTSF---FGVQEIIIHDQYKMAESGYD 480
Query: 208 IALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI 267
           IAL +L      +D  +PICLP   + R+ ++     +V GWG    R  +   L+  +I
Sbjct: 481 IALLKLETTVNYTDSQRPICLPSKGD-RNVIY--TDCWVTGWGYRKLRDKIQNTLQKAKI 537
Query: 268 SVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSY 327
            +V N +C++ +   G  I   ++CAG               PL    +  ++++G+ S+
Sbjct: 538 PLVTNEECQKRYR--GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSW 595
Query: 328 GKKCAEVGFPGVYTRVTNYIQWIADN 353
           G+ CA+   PGVYT V  Y+ WI + 
Sbjct: 596 GEGCAQRERPGVYTNVVEYVDWILEK 621

>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 251

Iteration: 1
 Score =  124 bits (311), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/262 (34%), Positives = 128/262 (48%), Gaps = 25/262 (9%)
Query: 97  CGVNAF--NSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEW--MCGGALITKRYV 152
           CG   F  N S R+VGG  +    WPW       ++  R N    W   CGG LIT  +V
Sbjct: 1   CGAPIFQPNLSARVVGGEDAIPHSWPWQ----ISLQYLRDN---TWRHTCGGTLITPNHV 53
Query: 153 LTAAHCVSPDTTGEYEPYIVHVG--SIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIAL 210
           LTAAHC+S   T     Y V +G  ++++ED +  + + ++   +HE++ S    NDIAL
Sbjct: 54  LTAAHCISNTLT-----YRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIAL 108
Query: 211 FRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVV 270
            +L E   L D IQ  CLP + +L   L +    FV GWG     GP++ +L+     VV
Sbjct: 109 IKLAETVELGDTIQVACLPSEGSL---LPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVV 165
Query: 271 DNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK- 329
           D   C Q    +G T+ E ++CAG               PL    D ++ + G+VS+G  
Sbjct: 166 DYATCSQ-RDWWGTTVKETMVCAGG-DGVISACNGDSGGPLNCQADGQWDVRGIVSFGSG 223
Query: 330 -KCAEVGFPGVYTRVTNYIQWI 350
             C     P V+TRV+ YI WI
Sbjct: 224 LSCNTFKKPTVFTRVSAYIDWI 245

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 17/244 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+      + 
Sbjct: 1   IVGGQECKDGECPWQALL--------INEENEGFCGGTILSEFYILTAAHCLY-----QA 47
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + V VG  + E    G ++ E+E  I H ++T      DIA+ RL+        + P 
Sbjct: 48  KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP      S L  +KT  V+G+G T  +G  S +L+ +++  VD   C+ + S++   I
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCK-LSSSF--II 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N+ CAG               P +      Y++ G+VS+G+ CA  G  G+YT+VT +
Sbjct: 165 TQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224
Query: 347 IQWI 350
           ++WI
Sbjct: 225 LKWI 228

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 17/244 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+      + 
Sbjct: 1   IVGGQECKDGECPWQALL--------INEENEGFCGGTILSEFYILTAAHCLY-----QA 47
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + V VG  + E    G ++ E+E  I H ++T      DIA+ RL+        + P 
Sbjct: 48  KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP      S L  +KT  V+G+G T  +G  S +L+ +++  VD   C+ + S++   I
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCK-LSSSF--II 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N+ CAG               P +      Y++ G+VS+G+ CA  G  G+YT+VT +
Sbjct: 165 TQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224
Query: 347 IQWI 350
           ++WI
Sbjct: 225 LKWI 228

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 17/244 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+      + 
Sbjct: 1   IVGGQECKDGECPWQALL--------INEENEGFCGGTILSEFYILTAAHCLY-----QA 47
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + V VG  + E    G ++ E+E  I H ++T      DIA+ RL+        + P 
Sbjct: 48  KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP      S L  +KT  V+G+G T  +G  S +L+ +++  VD   C+ + S++   I
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCK-LSSSF--II 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N+ CAG               P +      Y++ G+VS+G+ CA  G  G+YT+VT +
Sbjct: 165 TQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224
Query: 347 IQWI 350
           ++WI
Sbjct: 225 LKWI 228

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 17/244 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+      + 
Sbjct: 1   IVGGQECKDGECPWQALL--------INEENEGFCGGTILSEFYILTAAHCLY-----QA 47
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + V VG  + E    G ++ E+E  I H ++T      DIA+ RL+        + P 
Sbjct: 48  KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP      S L  +KT  V+G+G T  +G  S +L+ +++  VD   C+ + S++   I
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCK-LSSSF--II 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N+ CAG               P +      Y++ G+VS+G+ CA  G  G+YT+VT +
Sbjct: 165 TQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224
Query: 347 IQWI 350
           ++WI
Sbjct: 225 LKWI 228

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 17/244 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+      + 
Sbjct: 1   IVGGQECKDGECPWQALL--------INEENEGFCGGTILSEFYILTAAHCLY-----QA 47
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + V VG  + E    G ++ E+E  I H ++T      DIA+ RL+        + P 
Sbjct: 48  KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP      S L  +KT  V+G+G T  +G  S +L+ +++  VD   C+ + S++   I
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCK-LSSSF--II 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N+ CAG               P +      Y++ G+VS+G+ CA  G  G+YT+VT +
Sbjct: 165 TQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224
Query: 347 IQWI 350
           ++WI
Sbjct: 225 LKWI 228

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S RG+WPW   +      +R       +CGG++I  +++LTAAHC      G  
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRH------LCGGSIIGNQWILTAAHCFY----GVE 50
Query: 168 EPYIVHVGSIDL------EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
            P I+ V S  L      EDTS      ++  IIH+QY  A    DIAL +L      +D
Sbjct: 51  SPKILRVYSGILNQAEIKEDTSF---FGVQEIIIHDQYKMAESGYDIALLKLETTVNYAD 107
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
             +PICLP   + R+ ++     +V GWG    R  +   L+  +I +V N +C++ +  
Sbjct: 108 SQRPICLPSKGD-RNVIY--TDCWVTGWGYRALRDKIQNTLQKAKIPLVTNEECQKRYR- 163
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
            G  I   ++CAG               PL    +  ++++G+ S+G+ CA+   PGVYT
Sbjct: 164 -GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYT 222
Query: 342 RVTNYIQWIADN 353
            V  Y+ WI + 
Sbjct: 223 NVVEYVDWILEK 234

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 17/244 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+      + 
Sbjct: 1   IVGGQECKDGECPWQALL--------INEENEGFCGGTILSEFYILTAAHCLY-----QA 47
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + V VG  + E    G ++ E+E  I H ++T      DIA+ RL+        + P 
Sbjct: 48  KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP      S L  +KT  V+G+G T  +G  S +L+ +++  VD   C+ + S++   I
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCK-LSSSF--II 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N+ CAG               P +      Y++ G+VS+G+ CA  G  G+YT+VT +
Sbjct: 165 TQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224
Query: 347 IQWI 350
           ++WI
Sbjct: 225 LKWI 228

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 17/244 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+      + 
Sbjct: 1   IVGGQECKDGECPWQALL--------INEENEGFCGGTILSEFYILTAAHCLY-----QA 47
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + V VG  + E    G ++ E+E  I H ++T      DIA+ RL+        + P 
Sbjct: 48  KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP      S L  +KT  V+G+G T  +G  S +L+ +++  VD   C+ + S++   I
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCK-LSSSF--II 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N+ CAG               P +      Y++ G+VS+G+ CA  G  G+YT+VT +
Sbjct: 165 TQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224
Query: 347 IQWI 350
           ++WI
Sbjct: 225 LKWI 228

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 17/244 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+      + 
Sbjct: 1   IVGGQECKDGECPWQALL--------INEENEGFCGGTILSEFYILTAAHCLY-----QA 47
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + V VG  + E    G ++ E+E  I H ++T      DIA+ RL+        + P 
Sbjct: 48  KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP      S L  +KT  V+G+G T  +G  S +L+ +++  VD   C+ + S++   I
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCK-LSSSF--II 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N+ CAG               P +      Y++ G+VS+G+ CA  G  G+YT+VT +
Sbjct: 165 TQNMFCAGYDTKQEDACQGDAGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224
Query: 347 IQWI 350
           ++WI
Sbjct: 225 LKWI 228

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 17/244 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+      + 
Sbjct: 1   IVGGQECKDGECPWQALL--------INEENEGFCGGTILSEFYILTAAHCLY-----QA 47
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + V VG  + E    G ++ E+E  I H ++T      DIA+ RL+        + P 
Sbjct: 48  KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP      S L  +KT  V+G+G T  +G  S +L+ +++  VD   C+ + S++   I
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCK-LSSSF--II 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N+ CAG               P +      Y++ G+VS+G+ CA  G  G+YT+VT +
Sbjct: 165 TQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224
Query: 347 IQWI 350
           ++WI
Sbjct: 225 LKWI 228

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 17/244 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG     G+ PW A +         N + E  CGG ++ + YVLTAAHC+      + 
Sbjct: 1   IVGGRDCAEGECPWQALL--------VNEENEGFCGGTILNEFYVLTAAHCLH-----QA 47
Query: 168 EPYIVHVGSIDLE-DTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + V VG  + E +  + ++ E+E  + H ++       DIA+ RL+        + P 
Sbjct: 48  KRFTVRVGDRNTEQEEGNEMAHEVEMTVKHSRFVKETYDFDIAVLRLKTPIRFRRNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP      + L  +KT  V+G+G T  +G LS  L+ +++  VD   C+ + S++  TI
Sbjct: 108 CLPEKDWAEATLMTQKTGIVSGFGRTHEKGRLSSTLKMLEVPYVDRSTCK-LSSSF--TI 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
             N+ CAG               P +      Y++ G+VS+G+ CA  G  GVYT+V+N+
Sbjct: 165 TPNMFCAGYDTQPEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKFGVYTKVSNF 224
Query: 347 IQWI 350
           ++WI
Sbjct: 225 LKWI 228

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 17/244 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+      + 
Sbjct: 1   IVGGQECKDGECPWQALL--------INEENEGFCGGTILSEFYILTAAHCLY-----QA 47
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + V VG  + E    G ++ E+E  I H ++T      DIA+ RL+        + P 
Sbjct: 48  KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP      S L  +KT  V+G+G T  +G  S +L+ +++  VD   C+ + S++   I
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCK-LSSSF--II 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N+ CAG               P +      Y++ G+VS+G+ CA  G  G+YT+VT +
Sbjct: 165 TQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224
Query: 347 IQWI 350
           ++WI
Sbjct: 225 LKWI 228

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S RG+WPW   +      +R       +CGG++I  +++LTAAHC      G  
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRH------LCGGSIIGNQWILTAAHCFY----GVE 50
Query: 168 EPYIVHVGSIDL------EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
            P I+ V S  L      EDTS      ++  IIH+QY  A    DIAL +L      +D
Sbjct: 51  SPKILRVYSGILNQSEIKEDTSF---FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTD 107
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
             +PICLP   + R+ ++     +V GWG    R  +   L+  +I +V N +C++ +  
Sbjct: 108 SQRPICLPSKGD-RNVIY--TDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYR- 163
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
            G  I   ++CAG               PL    +  ++++G+ S+G+ CA+   PGVYT
Sbjct: 164 -GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYT 222
Query: 342 RVTNYIQWIADN 353
            V  Y+ WI + 
Sbjct: 223 NVVEYVDWILEK 234

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S RG+WPW   +      +R       +CGG++I  +++LTAAHC      G  
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRH------LCGGSIIGNQWILTAAHCFY----GVE 50
Query: 168 EPYIVHVGSIDL------EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
            P I+ V S  L      EDTS      ++  IIH+QY  A    DIAL +L      +D
Sbjct: 51  SPKILRVYSGILNQAEIAEDTSF---FGVQEIIIHDQYKMAESGYDIALLKLETTVNYAD 107
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
             +PICLP   + R+ ++     +V GWG    R  +   L+  +I +V N +C++ +  
Sbjct: 108 SQRPICLPSKGD-RNVIY--TDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYR- 163
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
            G  I   ++CAG               PL    +  ++++G+ S+G+ CA+   PGVYT
Sbjct: 164 -GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYT 222
Query: 342 RVTNYIQWIADN 353
            V  Y+ WI + 
Sbjct: 223 NVVEYVDWILEK 234

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 24/252 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S RG+WPW   +      +R       +CGG++I  +++LTAAHC      G  
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRH------LCGGSIIGNQWILTAAHCFY----GVE 50
Query: 168 EPYIVHVGSIDL------EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
            P I+ V S  L      EDTS      ++  IIH+QY  A    DIAL +L      +D
Sbjct: 51  SPKILRVYSGILNQAEIKEDTSF---FGVQEIIIHDQYKMAESGYDIALLKLETTVNYAD 107
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
             +PICLP   + R+ ++     +V GWG    R  +   L+  +I +V N +C++ +  
Sbjct: 108 SQRPICLPSKGD-RNVIY--TDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYR- 163
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
            G  I   ++CAG               PL    +  ++++G+ S+G+ CA+   PGVYT
Sbjct: 164 -GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYT 222
Query: 342 RVTNYIQWIADN 353
            V  Y+ WI + 
Sbjct: 223 NVVEYVDWILEK 234

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 17/244 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+      + 
Sbjct: 1   IVGGQECKDGECPWQALL--------INEENEGFCGGTILSEFYILTAAHCLY-----QA 47
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + V VG  +      G ++ E+E  I H ++T      DIA+ RL+        + P 
Sbjct: 48  KRFKVRVGDRNTAAEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP      S L  +KT  V+G+G T  +G  S +L+ +++  VD   C+ + S++   I
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCK-LSSSF--II 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N+ CAG               P +      Y++ G+VS+G+ CA  G  G+YT+VT +
Sbjct: 165 TQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224
Query: 347 IQWI 350
           ++WI
Sbjct: 225 LKWI 228

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 123/254 (48%), Gaps = 23/254 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           ++ G  + RG  PW   +         + K +  CG  LI   +VLTAAHC+      E 
Sbjct: 1   LIDGKMTRRGDSPWQVVL--------LDSKKKLACGAVLIHPSWVLTAAHCMD-----ES 47
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           +  +V +G  DL       + ++I+   +H  Y+ +   NDIAL  L + A LS  I PI
Sbjct: 48  KKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPI 107
Query: 227 CLPYDTNLRSELFER-KTPFVAGWGSTVFRGPLSPK-----LRHVQISVVDNPKCRQIFS 280
           CLP       EL +  +   V GWG    R   + +     L  ++I VV + +C ++ S
Sbjct: 108 CLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMS 167
Query: 281 NYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVY 340
           N    ++EN+LCAG+L             P++      ++++G+VS+G+ C  +   GVY
Sbjct: 168 N---MVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVY 224
Query: 341 TRVTNYIQWIADNI 354
           T+V+ Y+ WI  +I
Sbjct: 225 TKVSRYLDWIHGHI 238

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 123/254 (48%), Gaps = 23/254 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           ++ G  + RG  PW   +         + K +  CG  LI   +VLTAAHC+      E 
Sbjct: 1   LIDGKMTRRGDSPWQVVL--------LDSKKKLACGAVLIHPSWVLTAAHCMD-----ES 47
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           +  +V +G  DL       + ++I+   +H  Y+ +   NDIAL  L + A LS  I PI
Sbjct: 48  KKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPI 107
Query: 227 CLPYDTNLRSELFER-KTPFVAGWGSTVFRGPLSPK-----LRHVQISVVDNPKCRQIFS 280
           CLP       EL +  +   V GWG    R   + +     L  ++I VV + +C ++ S
Sbjct: 108 CLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMS 167
Query: 281 NYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVY 340
           N    ++EN+LCAG+L             P++      ++++G+VS+G+ C  +   GVY
Sbjct: 168 N---MVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVY 224
Query: 341 TRVTNYIQWIADNI 354
           T+V+ Y+ WI  +I
Sbjct: 225 TKVSRYLDWIHGHI 238

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 122/245 (49%), Gaps = 17/245 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG+ ++ G WPW+  + +  R          +CG +L++  ++++AAHCV      E 
Sbjct: 1   IVGGSDAKEGAWPWVVGLYYDDRL---------LCGASLVSSDWLVSAAHCVYGRNL-EP 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIE--IERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
             +   +G     + +S  ++   I+  +I+  Y   RK NDIA+  L      +D IQP
Sbjct: 51  SKWTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQP 110
Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
           I LP +  +       +   +AGWG+ V++G  +  L+   + ++ N +C+Q    Y   
Sbjct: 111 ISLPEENQV---FPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEY--N 165
Query: 286 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           I EN++CAG               PLM   + ++++ GV S+G +CA    PGVY RV+ 
Sbjct: 166 ITENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSR 225
Query: 346 YIQWI 350
           + +WI
Sbjct: 226 FTEWI 230

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 122/252 (48%), Gaps = 24/252 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S RG+WPW   +      +R       +CGG++I  +++LTAAHC      G  
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRH------LCGGSIIGNQWILTAAHCFY----GVE 50
Query: 168 EPYIVHVGSIDL------EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
            P I+ V S  L      EDTS      ++  IIH+QY  A    DIAL +L      +D
Sbjct: 51  SPKILRVYSGILNQSEIKEDTSF---FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTD 107
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
             +PI LP   + R+ ++     +V GWG    R  +   L+  +I +V N +C++ +  
Sbjct: 108 SQRPISLPSKGD-RNVIY--TDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYR- 163
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
            G  I   ++CAG               PL    +  ++++G+ S+G+ CA+   PGVYT
Sbjct: 164 -GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYT 222
Query: 342 RVTNYIQWIADN 353
            V  Y+ WI + 
Sbjct: 223 NVVEYVDWILEK 234

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 122/252 (48%), Gaps = 24/252 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S RG+WPW   +      +R       +CGG++I  +++LTAAHC      G  
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRH------LCGGSIIGNQWILTAAHCFY----GVE 50
Query: 168 EPYIVHVGSIDL------EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
            P I+ V S  L      EDTS      ++  IIH+QY  A    DIAL +L      +D
Sbjct: 51  SPKILRVYSGILNQAEIKEDTSF---FGVQEIIIHDQYKMAESGYDIALLKLETTVNYAD 107
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
             +PI LP   + R+ ++     +V GWG    R  +   L+  +I +V N +C++ +  
Sbjct: 108 SQRPISLPSKGD-RNVIY--TDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYR- 163
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
            G  I   ++CAG               PL    +  ++++G+ S+G+ CA+   PGVYT
Sbjct: 164 -GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYT 222
Query: 342 RVTNYIQWIADN 353
            V  Y+ WI + 
Sbjct: 223 NVVEYVDWILEK 234

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 122/252 (48%), Gaps = 24/252 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S RG+WPW   +      +R       +CGG++I  +++LTAAHC      G  
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRH------LCGGSIIGNQWILTAAHCFY----GVE 50
Query: 168 EPYIVHVGSIDL------EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
            P I+ V S  L      EDTS      ++  IIH+QY  A    DIAL +L      +D
Sbjct: 51  SPKILRVYSGILNQSEIAEDTSF---FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTD 107
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
             +PI LP   + R+ ++     +V GWG    R  +   L+  +I +V N +C++ +  
Sbjct: 108 SQRPISLPSKGD-RNVIY--TDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYR- 163
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
            G  I   ++CAG               PL    +  ++++G+ S+G+ CA+   PGVYT
Sbjct: 164 -GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYT 222
Query: 342 RVTNYIQWIADN 353
            V  Y+ WI + 
Sbjct: 223 NVVEYVDWILEK 234

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 122/252 (48%), Gaps = 24/252 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S RG+WPW   +      +R       +CGG++I  +++LTAAHC      G  
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRH------LCGGSIIGNQWILTAAHCFY----GVE 50
Query: 168 EPYIVHVGSIDL------EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
            P I+ V S  L      EDTS      ++  IIH+QY  A    DIAL +L      +D
Sbjct: 51  SPKILRVYSGILNQAEIAEDTSF---FGVQEIIIHDQYKMAESGYDIALLKLETTVNYAD 107
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
             +PI LP   + R+ ++     +V GWG    R  +   L+  +I +V N +C++ +  
Sbjct: 108 SQRPISLPSKGD-RNVIY--TDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYR- 163
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
            G  I   ++CAG               PL    +  ++++G+ S+G+ CA+   PGVYT
Sbjct: 164 -GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYT 222
Query: 342 RVTNYIQWIADN 353
            V  Y+ WI + 
Sbjct: 223 NVVEYVDWILEK 234

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score =  118 bits (296), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 122/252 (48%), Gaps = 24/252 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S RG+WPW   +      +R       +CGG++I  +++LTAAHC      G  
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRH------LCGGSIIGNQWILTAAHCFY----GVE 50
Query: 168 EPYIVHVGSIDL------EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
            P I+ V S  L      EDTS      ++  IIH+QY  A    DIAL +L      +D
Sbjct: 51  SPKILRVYSGILNQAEIAEDTSF---FGVQEIIIHDQYKMAESGYDIALLKLETTVNYAD 107
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
             +PI LP   + R+ ++     +V GWG    R  +   L+  +I +V N +C++ +  
Sbjct: 108 SQRPISLPSKGD-RNVIY--TDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYR- 163
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
            G  I   ++CAG               PL    +  ++++G+ S+G+ CA+   PGVYT
Sbjct: 164 -GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYT 222
Query: 342 RVTNYIQWIADN 353
            V  Y+ WI + 
Sbjct: 223 NVVEYVDWILEK 234

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score =  118 bits (295), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 121/252 (48%), Gaps = 24/252 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S RG+WPW   +      +R       +CGG++I  +++LTAAHC      G  
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRH------LCGGSIIGNQWILTAAHCFY----GVE 50
Query: 168 EPYIVHVGSIDL------EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
            P I+ V S  L      EDTS      ++  IIH+QY  A    DIAL +L      +D
Sbjct: 51  SPKILRVYSGILNQSEIKEDTSF---FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTD 107
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
             +PI LP     R+ ++     +V GWG    R  +   L+  +I +V N +C++ +  
Sbjct: 108 SQRPISLP-SKGERNVIY--TDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYR- 163
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
            G  I   ++CAG               PL    +  ++++G+ S+G+ CA+   PGVYT
Sbjct: 164 -GHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYT 222
Query: 342 RVTNYIQWIADN 353
            V  Y+ WI + 
Sbjct: 223 NVVEYVDWILEK 234

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 21/248 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  ++ GQ+PW   +         NGK +  CGG++I +++V+TAAHC+ P      
Sbjct: 1   IVGGENAKPGQFPWQVLL---------NGKIDAFCGGSIINEKWVVTAAHCIEPGV---- 47
Query: 168 EPYIVHVGSIDLEDTS-SGVSIEIERPIIHEQY--TSARKLNDIALFRLREDAPLSDLIQ 224
               V  G  + E+T  +     + R I H  Y  T  +  +DIAL  L E   L+  + 
Sbjct: 48  -KITVVAGEYNTEETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNSYVT 106
Query: 225 PICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
           PIC+  D    +   +  + +V+GWG    RG  +  L+++++ +VD   C     +   
Sbjct: 107 PICIA-DKEYTNIFLKFGSGYVSGWGRVFNRGRSATILQYLKVPLVDRATC---LRSTKF 162
Query: 285 TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
           TI  N+ CAG               P +  ++   ++ G++S+G++CA  G  G+YT+V+
Sbjct: 163 TIYSNMFCAGFHEGGKDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAVKGKYGIYTKVS 222
Query: 345 NYIQWIAD 352
            Y+ WI +
Sbjct: 223 RYVNWIKE 230

>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To Inhibitor Eglin C From Hirudo Medicinalis Length = 249

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 123/253 (48%), Gaps = 22/253 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  +    WPW  ++ +       N      CGG LI   +VLTAAHC+S   T   
Sbjct: 1   VVGGEDARPHSWPWQISLQY-----LKNDTWRHTCGGTLIASNFVLTAAHCISNTRT--- 52
Query: 168 EPYIVHVG--SIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
             Y V VG  ++++ED    + + ++   +H+++ +    NDIAL +L E   LSD IQ 
Sbjct: 53  --YRVAVGKNNLEVEDEEGSLFVGVDTIHVHKRWNALLLRNDIALIKLAEHVELSDTIQV 110
Query: 226 ICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
            CLP     +  L  +  P +V GWG     GP++ KL+     VVD+  C +I   +G 
Sbjct: 111 ACLPE----KDSLLPKDYPCYVTGWGRLWTNGPIADKLQQGLQPVVDHATCSRI-DWWGF 165
Query: 285 TINENILCAGVLXXXXXXXXXXXXXPLMYPLDT-KYYIIGVVSYGKK--CAEVGFPGVYT 341
            + + ++CAG               PL   L+   + + G+VS+G +  C     P VYT
Sbjct: 166 RVKKTMVCAGG-DGVISACNGDSGGPLNCQLENGSWEVFGIVSFGSRRGCNTRKKPVVYT 224
Query: 342 RVTNYIQWIADNI 354
           RV+ YI WI + +
Sbjct: 225 RVSAYIDWINEKM 237

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 127/275 (46%), Gaps = 25/275 (9%)
Query: 95  NECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
           N+CG      + +I+ G  +   ++PW A IG+K     ++   ++ CGG+LI  RY++T
Sbjct: 12  NDCGYQV--EADKILNGDDTVPEEFPWTAMIGYK----NSSNFEQFACGGSLINNRYIVT 65
Query: 155 AAHCVSPDTT-----------GEYEPYIVH--VGSIDLEDTSSGVSIEIERPIIHEQYTS 201
           AAHCV+               GE+         G++ +      + + IE  I H  Y  
Sbjct: 66  AAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVD 125
Query: 202 ARK--LNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLS 259
             K   +DIAL RL      ++ I+P+CLP   N   ++ +R T  V GWG T   G  S
Sbjct: 126 GSKDRYHDIALIRLNRQVEFTNYIRPVCLP-QPNEEVQVGQRLT--VVGWGRTE-TGQYS 181
Query: 260 PKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKY 319
              + + + VV   +C + F   G  +  + LCAG                L    + ++
Sbjct: 182 TIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEKAKDSCGGDSGGPLLAERANQQF 241
Query: 320 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
           ++ G+VS+G  C   G+PG+YT+V  Y  WI  NI
Sbjct: 242 FLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNI 276

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 121/258 (46%), Gaps = 25/258 (9%)
Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE 166
           RIVGG  +  G+WPW  ++       R +G    +CGG+L++  +VLTAAHC  P+    
Sbjct: 117 RIVGGRDTSLGRWPWQVSL-------RYDGAH--LCGGSLLSGDWVLTAAHCF-PERNRV 166
Query: 167 YEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQY------TSARKLNDIALFRLREDAPLS 220
              + V  G++  + +  G+ + ++  + H  Y       S    NDIAL  L    PL+
Sbjct: 167 LSRWRVFAGAV-AQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLT 225
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFS 280
           + IQP+CLP        L + K   V GWG+T + G  +  L+  ++ ++ N  C     
Sbjct: 226 EYIQPVCLPAAGQ---ALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGA-D 281
Query: 281 NYGATINENILCAGVLXXXXXXXXXXXXXPLM----YPLDTKYYIIGVVSYGKKCAEVGF 336
            YG  I   + CAG               P +         ++ + G+VS+G  CA    
Sbjct: 282 FYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQK 341
Query: 337 PGVYTRVTNYIQWIADNI 354
           PGVYT+V+++ +WI   I
Sbjct: 342 PGVYTKVSDFREWIFQAI 359

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 121/258 (46%), Gaps = 25/258 (9%)
Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE 166
           RIVGG  +  G+WPW  ++       R +G    +CGG+L++  +VLTAAHC  P+    
Sbjct: 117 RIVGGRDTSLGRWPWQVSL-------RYDGAH--LCGGSLLSGDWVLTAAHCF-PERNRV 166
Query: 167 YEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQY------TSARKLNDIALFRLREDAPLS 220
              + V  G++  + +  G+ + ++  + H  Y       S    NDIAL  L    PL+
Sbjct: 167 LSRWRVFAGAV-AQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLT 225
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFS 280
           + IQP+CLP        L + K   V GWG+T + G  +  L+  ++ ++ N  C     
Sbjct: 226 EYIQPVCLPAAGQ---ALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGA-D 281
Query: 281 NYGATINENILCAGVLXXXXXXXXXXXXXPLM----YPLDTKYYIIGVVSYGKKCAEVGF 336
            YG  I   + CAG               P +         ++ + G+VS+G  CA    
Sbjct: 282 FYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQK 341
Query: 337 PGVYTRVTNYIQWIADNI 354
           PGVYT+V+++ +WI   I
Sbjct: 342 PGVYTKVSDFREWIFQAI 359

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 123/251 (49%), Gaps = 27/251 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  ++ GQ+PW   +         NGK +  CGG+++ +++++TAAHCV        
Sbjct: 1   VVGGEDAKPGQFPWQVVL---------NGKVDAFCGGSIVNEKWIVTAAHCVETGV---- 47
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPII----HEQYTSARKL--NDIALFRLREDAPLSD 221
               V  G  ++E+T      E +R +I    H  Y +A     +DIAL  L E   L+ 
Sbjct: 48  -KITVVAGEHNIEETEH---TEQKRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNS 103
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
            + PIC+  D    +   +  + +V+GWG    +G  +  L+++++ +VD   C     +
Sbjct: 104 YVTPICIA-DKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATC---LRS 159
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
              TI  N+ CAG               P +  ++   ++ G++S+G++CA  G  G+YT
Sbjct: 160 TKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYT 219
Query: 342 RVTNYIQWIAD 352
           +V+ Y+ WI +
Sbjct: 220 KVSRYVNWIKE 230

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 123/248 (49%), Gaps = 21/248 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  ++ GQ+PW   +         NGK +  CGG+++ +++++TAAHCV        
Sbjct: 1   VVGGEDAKPGQFPWQVVL---------NGKVDAFCGGSIVNEKWIVTAAHCVETGV---- 47
Query: 168 EPYIVHVGSIDLEDTS-SGVSIEIERPIIHEQYTSA-RKLN-DIALFRLREDAPLSDLIQ 224
               V  G  ++E+T  +     + R I H  Y +A  K N DIAL  L E   L+  + 
Sbjct: 48  -KITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVT 106
Query: 225 PICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
           PIC+  D    +   +  + +V+GWG    +G  +  L+++++ +VD   C     +   
Sbjct: 107 PICIA-DKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATC---LRSTKF 162
Query: 285 TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
           TI  N+ CAG               P +  ++   ++ G++S+G++CA  G  G+YT+V+
Sbjct: 163 TIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVS 222
Query: 345 NYIQWIAD 352
            Y+ WI +
Sbjct: 223 RYVNWIKE 230

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score =  111 bits (278), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 123/248 (49%), Gaps = 21/248 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  ++ GQ+PW   +         NGK +  CGG+++ +++++TAAHCV        
Sbjct: 1   VVGGEDAKPGQFPWQVVL---------NGKVDAFCGGSIVNEKWIVTAAHCVETGV---- 47
Query: 168 EPYIVHVGSIDLEDTS-SGVSIEIERPIIHEQYTSA-RKLN-DIALFRLREDAPLSDLIQ 224
               V  G  ++E+T  +     + R I H  Y +A  K N DIAL  L E   L+  + 
Sbjct: 48  -KITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVT 106
Query: 225 PICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
           PIC+  D    +   +  + +V+GWG    +G  +  L+++++ +VD   C     +   
Sbjct: 107 PICIA-DKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATC---LRSTKF 162
Query: 285 TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
           TI  N+ CAG               P +  ++   ++ G++S+G++CA  G  G+YT+V+
Sbjct: 163 TIYNNMFCAGFHEGGRDSCQGDAGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVS 222
Query: 345 NYIQWIAD 352
            Y+ WI +
Sbjct: 223 RYVNWIKE 230

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score =  110 bits (276), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 123/251 (49%), Gaps = 27/251 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  ++ GQ+PW   +         NGK +  CGG+++ +++++TAAHCV        
Sbjct: 1   VVGGEDAKPGQFPWQVVL---------NGKVDAFCGGSIVNEKWIVTAAHCVETGV---- 47
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPII----HEQYTSARKL--NDIALFRLREDAPLSD 221
               V  G  ++E+T      E +R +I    H  + +A     +DIAL  L E   L+ 
Sbjct: 48  -KITVVAGEHNIEETEH---TEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNS 103
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
            + PIC+  D    +   +  + +V+GWG    +G  +  L+++++ +VD   C     +
Sbjct: 104 YVTPICIA-DKEYTNIFLKFGSGYVSGWGRVFHKGRAALVLQYLRVPLVDRATC---LRS 159
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
              TI  N+ CAG               P +  ++   ++ G++S+G++CA  G  G+YT
Sbjct: 160 TKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYT 219
Query: 342 RVTNYIQWIAD 352
           +V+ Y+ WI +
Sbjct: 220 KVSRYVNWIKE 230

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 123/251 (49%), Gaps = 27/251 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  ++ GQ+PW   +         NGK +  CGG+++ +++++TAAHCV        
Sbjct: 1   VVGGEDAKPGQFPWQVVL---------NGKVDAFCGGSIVNEKWIVTAAHCVETGV---- 47
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPII----HEQYTSARKL--NDIALFRLREDAPLSD 221
               V  G  ++E+T      E +R +I    H  + +A     +DIAL  L E   L+ 
Sbjct: 48  -KITVVAGEHNIEETEH---TEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNS 103
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
            + PIC+  D    +   +  + +V+GWG    +G  +  L+++++ +VD   C     +
Sbjct: 104 YVTPICIA-DKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATC---LRS 159
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
              TI  N+ CAG               P +  ++   ++ G++S+G++CA  G  G+YT
Sbjct: 160 TKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYT 219
Query: 342 RVTNYIQWIAD 352
           +V+ Y+ WI +
Sbjct: 220 KVSRYVNWIKE 230

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 111/246 (45%), Gaps = 14/246 (5%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG    +G+ PW   +         NG    +CGG LI   +V++AAHC   D    +
Sbjct: 1   IVGGKDCPKGECPWQVLL-------LVNGAQ--LCGGTLINTIWVVSAAHCF--DKIKNW 49
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
              I  +G  DL E      S  + + II   Y      +DIAL RL +   L+D + P+
Sbjct: 50  RNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPL 109
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT- 285
           CLP  T     L   +   V+GWG  + RG  +  L+ + +  +    C Q     G + 
Sbjct: 110 CLPERTFSERTLAFVRFSLVSGWGQLLDRGATALVLQVLNVPRLMTQDCLQQSRKVGDSP 169
Query: 286 -INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
            I E + CAG               P        +Y+ G+VS+G+ CA VG  GVYTRV+
Sbjct: 170 NITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVS 229
Query: 345 NYIQWI 350
            YI+W+
Sbjct: 230 QYIEWL 235

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/246 (31%), Positives = 111/246 (45%), Gaps = 14/246 (5%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG    +G+ PW   +         NG    +CGG LI   +V++AAHC   D    +
Sbjct: 1   IVGGKVCPKGECPWQVLL-------LVNGAQ--LCGGTLINTIWVVSAAHCF--DKIKNW 49
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
              I  +G  DL E      S  + + II   Y      +DIAL RL +   L+D + P+
Sbjct: 50  RNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPL 109
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT- 285
           CLP  T     L   +   V+GWG  + RG  + +L  + +  +    C Q     G + 
Sbjct: 110 CLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSP 169
Query: 286 -INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
            I E + CAG               P        +Y+ G+VS+G+ CA VG  GVYTRV+
Sbjct: 170 NITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVS 229
Query: 345 NYIQWI 350
            YI+W+
Sbjct: 230 QYIEWL 235

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 120/257 (46%), Gaps = 25/257 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +  G+WPW  ++       R +G    +CGG+L++  +VLTAAHC  P+     
Sbjct: 1   IVGGRDTSLGRWPWQVSL-------RYDGAH--LCGGSLLSGDWVLTAAHCF-PERNRVL 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQY------TSARKLNDIALFRLREDAPLSD 221
             + V  G++  + +  G+ + ++  + H  Y       S    NDIAL  L    PL++
Sbjct: 51  SRWRVFAGAV-AQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTE 109
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
            IQP+CLP        L + K   V GWG+T + G  +  L+  ++ ++ N  C      
Sbjct: 110 YIQPVCLPAAGQ---ALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGA-DF 165
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLM----YPLDTKYYIIGVVSYGKKCAEVGFP 337
           YG  I   + CAG               P +         ++ + G+VS+G  CA    P
Sbjct: 166 YGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKP 225
Query: 338 GVYTRVTNYIQWIADNI 354
           GVYT+V+++ +WI   I
Sbjct: 226 GVYTKVSDFREWIFQAI 242

>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii Transmembrane Serine Proteinases Family Length = 232

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 112/245 (45%), Gaps = 21/245 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT  E G+WPW A++ +    R         CG  LI   ++++AAHC +      Y
Sbjct: 1   IVGGTEVEEGEWPWQASLQWDGSHR---------CGATLINATWLVSAAHCFT-----TY 46
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
           +       S  +    S +   + R I+HE+Y       DI+L  L    P ++ +  +C
Sbjct: 47  KNPARWTASFGVTIKPSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVC 106
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP   +   E       FV G+G+    G     LR  Q++++D   C +  + Y   I 
Sbjct: 107 LP---DASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQA-YNDAIT 162
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTK--YYIIGVVSYGKKCAEVGFPGVYTRVTN 345
             +LCAG L             PL+   D +  +Y+ G+VS+G +CA+   PGVYTRVT 
Sbjct: 163 PRMLCAGSLEGKTDACQGDSGGPLVSS-DARDIWYLAGIVSWGDECAKPNKPGVYTRVTA 221
Query: 346 YIQWI 350
              WI
Sbjct: 222 LRDWI 226

>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva Plasminogen Activator In Complex With Egr-Cmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 136/270 (50%), Gaps = 20/270 (7%)
Query: 97  CGVNAFNSSK-RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTA 155
           CG+  +   +    GG  ++    PW AAI    + RR++G+  ++CGG LI+  +VLTA
Sbjct: 2   CGLRKYKEPQLHSTGGLFTDITSHPWQAAI--FAQNRRSSGE-RFLCGGILISSCWVLTA 58
Query: 156 AHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRE 215
           AHC       + +  +V   +  ++      + ++++ I+H+++      NDIAL +L+ 
Sbjct: 59  AHCFQESYLPD-QLKVVLGRTYRVKPGEEEQTFKVKKYIVHKEFDDDTYNNDIALLQLKS 117
Query: 216 DAPL----SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL-SPKLRHVQISVV 270
           D+P     SD ++ ICLP + NL  +L +     ++G+G      P  S +L+   + + 
Sbjct: 118 DSPQCAQESDSVRAICLP-EANL--QLPDWTECELSGYGKHKSSSPFYSEQLKEGHVRLY 174
Query: 271 DNPKCRQIFSNYGATINENILCAG------VLXXXXXXXXXXXXXPLMYPLDTKYYIIGV 324
            + +C   F  +  T+  N+LCAG      +              PL+   D    ++G+
Sbjct: 175 PSSRCAPKFL-FNKTVTNNMLCAGDTRSGEIYPNVHDACQGDSGGPLVCMNDNHMTLLGI 233
Query: 325 VSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
           +S+G  C E   PGVYT+VTNY+ WI DN+
Sbjct: 234 ISWGVGCGEKDVPGVYTKVTNYLGWIRDNM 263

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 120/254 (47%), Gaps = 28/254 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWM--CGGALITKRYVLTAAHCVSPDTTG 165
           IVGG  + R +WPW   +  ++R R       WM  CGG+LI  ++VLTAAHCV PD   
Sbjct: 1   IVGGQEAPRSKWPWQ--VSLRVRDRY------WMHFCGGSLIHPQWVLTAAHCVGPDVK- 51
Query: 166 EYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
             +   + V   +         + + R I+H Q+   +   DIAL  L E   +S  +  
Sbjct: 52  --DLATLRVQLREQHLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHT 109
Query: 226 ICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPK--LRHVQISVVDNPKCRQIFSNY 282
           + LP      SE F    P +V GWG      PL P   L+ V++ +++N  C   +   
Sbjct: 110 VMLP----PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLG 165
Query: 283 GAT------INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGF 336
             T      I +++LCAG               PL+  ++  +   GVVS+G+ CA+   
Sbjct: 166 AYTGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNR 223
Query: 337 PGVYTRVTNYIQWI 350
           PG+YTRVT Y+ WI
Sbjct: 224 PGIYTRVTYYLDWI 237

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 120/254 (47%), Gaps = 28/254 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWM--CGGALITKRYVLTAAHCVSPDTTG 165
           IVGG  + R +WPW   +  ++R R       WM  CGG+LI  ++VLTAAHCV PD   
Sbjct: 1   IVGGQEAPRSKWPWQ--VSLRVRDRY------WMHFCGGSLIHPQWVLTAAHCVGPDVK- 51
Query: 166 EYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
             +   + V   +         + + R I+H Q+   +   DIAL  L E   +S  +  
Sbjct: 52  --DLATLRVQLREQHLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHT 109
Query: 226 ICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPK--LRHVQISVVDNPKCRQIFSNY 282
           + LP      SE F    P +V GWG      PL P   L+ V++ +++N  C   +   
Sbjct: 110 VMLP----PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLG 165
Query: 283 GAT------INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGF 336
             T      I +++LCAG               PL+  ++  +   GVVS+G+ CA+   
Sbjct: 166 AYTGDDVRIIRDDMLCAG--NSQRDSCKGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNR 223
Query: 337 PGVYTRVTNYIQWI 350
           PG+YTRVT Y+ WI
Sbjct: 224 PGIYTRVTYYLDWI 237

>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active Sites Facing A Central Pore Length = 244

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 122/254 (48%), Gaps = 28/254 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWM--CGGALITKRYVLTAAHCVSPDTTG 165
           IVGG  + R +WPW  ++       R +G P WM  CGG+LI  ++VLTAAHCV PD   
Sbjct: 1   IVGGQEAPRSKWPWQVSL-------RVHG-PYWMHFCGGSLIHPQWVLTAAHCVGPDVK- 51
Query: 166 EYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
             +   + V   +         + + R I+H Q+ +A+   DIAL  L E   +S  +  
Sbjct: 52  --DLAALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHT 109
Query: 226 ICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPK--LRHVQISVVDNPKCRQIFSNY 282
           + LP      SE F    P +V GWG       L P   L+ V++ +++N  C   +   
Sbjct: 110 VTLP----PASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLG 165
Query: 283 GAT------INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGF 336
             T      + +++LCAG               PL+  ++  +   GVVS+G+ CA+   
Sbjct: 166 AYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNR 223
Query: 337 PGVYTRVTNYIQWI 350
           PG+YTRVT Y+ WI
Sbjct: 224 PGIYTRVTYYLDWI 237

>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl- Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)- Methanone Length = 245

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 122/254 (48%), Gaps = 28/254 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWM--CGGALITKRYVLTAAHCVSPDTTG 165
           IVGG  + R +WPW  ++       R +G P WM  CGG+LI  ++VLTAAHCV PD   
Sbjct: 1   IVGGQEAPRSKWPWQVSL-------RVHG-PYWMHFCGGSLIHPQWVLTAAHCVGPDVK- 51
Query: 166 EYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
             +   + V   +         + + R I+H Q+ +A+   DIAL  L E   +S  +  
Sbjct: 52  --DLAALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHT 109
Query: 226 ICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPK--LRHVQISVVDNPKCRQIFSNY 282
           + LP      SE F    P +V GWG       L P   L+ V++ +++N  C   +   
Sbjct: 110 VTLP----PASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLG 165
Query: 283 GAT------INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGF 336
             T      + +++LCAG               PL+  ++  +   GVVS+G+ CA+   
Sbjct: 166 AYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNR 223
Query: 337 PGVYTRVTNYIQWI 350
           PG+YTRVT Y+ WI
Sbjct: 224 PGIYTRVTYYLDWI 237

>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase Length = 243

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 122/254 (48%), Gaps = 28/254 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWM--CGGALITKRYVLTAAHCVSPDTTG 165
           IVGG  + R +WPW  ++       R +G P WM  CGG+LI  ++VLTAAHCV PD   
Sbjct: 1   IVGGQEAPRSKWPWQVSL-------RVHG-PYWMHFCGGSLIHPQWVLTAAHCVGPDVK- 51
Query: 166 EYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
             +   + V   +         + + R I+H Q+ +A+   DIAL  L E   +S  +  
Sbjct: 52  --DLAALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHT 109
Query: 226 ICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPK--LRHVQISVVDNPKCRQIFSNY 282
           + LP      SE F    P +V GWG       L P   L+ V++ +++N  C   +   
Sbjct: 110 VTLP----PASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLG 165
Query: 283 GAT------INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGF 336
             T      + +++LCAG               PL+  ++  +   GVVS+G+ CA+   
Sbjct: 166 AYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNR 223
Query: 337 PGVYTRVTNYIQWI 350
           PG+YTRVT Y+ WI
Sbjct: 224 PGIYTRVTYYLDWI 237

>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed With A Peptide Inhibitor, Sgti Length = 237

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 115/253 (45%), Gaps = 25/253 (9%)
Query: 108 IVGGTPSERGQWPWMAA-----IGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPD 162
           IVGGT +  G++P+  +     IGF              CG ++  + Y +TA HCV  D
Sbjct: 1   IVGGTDATLGEFPYQLSFQETFIGFSFH----------FCGASIYNENYAITAGHCVYGD 50
Query: 163 TTGEYEPYIVHVGSIDLE-DTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
                    +  G +D+  +  S   I + + I+HE +      NDI+L +L      +D
Sbjct: 51  DYENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFND 110
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
            + PI LP   +  +         V GWG+T   G     L+ V + +V +  CR   ++
Sbjct: 111 NVAPIALPEQGHTAT-----GDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCR---AD 162
Query: 282 YGAT-INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVY 340
           YGA  I ++++CAGV              PL        Y+ G+VS+G  CA  G+PGVY
Sbjct: 163 YGADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVY 222
Query: 341 TRVTNYIQWIADN 353
           T V+ ++ WI  N
Sbjct: 223 TEVSYHVDWIKAN 235

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 119/257 (46%), Gaps = 24/257 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I GG+ +  GQWPW  +I ++            +CGG+L+++++VL+AAHC   +     
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVH---------VCGGSLVSEQWVLSAAHCFPSEH--HK 49
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPII-HEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           E Y V +G+  L+  S    +   + II H  Y       DIAL +L      S  I+PI
Sbjct: 50  EAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPI 109
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFR-GPLSPK-LRHVQISVVDNPKCRQIFSNYGA 284
            LP     ++         V GWG        L+PK L+ +++ ++    C  ++ N  A
Sbjct: 110 SLP---AAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLY-NIDA 165
Query: 285 T------INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
                  + E+++CAG +             PL  P++  +Y+ G+VS+G  C     PG
Sbjct: 166 KPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPG 225
Query: 339 VYTRVTNYIQWIADNIS 355
           VYT  ++Y  WI   ++
Sbjct: 226 VYTLASSYASWIQSKVT 242

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 119/257 (46%), Gaps = 24/257 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I GG+ +  GQWPW  +I ++            +CGG+L+++++VL+AAHC   +     
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVH---------VCGGSLVSEQWVLSAAHCFPSEH--HK 49
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPII-HEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           E Y V +G+  L+  S    +   + II H  Y       DIAL +L      S  I+PI
Sbjct: 50  EAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPI 109
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFR-GPLSPK-LRHVQISVVDNPKCRQIFSNYGA 284
            LP     ++         V GWG        L+PK L+ +++ ++    C  ++ N  A
Sbjct: 110 SLP---AAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLY-NIDA 165
Query: 285 T------INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
                  + E+++CAG +             PL  P++  +Y+ G+VS+G  C     PG
Sbjct: 166 KPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPG 225
Query: 339 VYTRVTNYIQWIADNIS 355
           VYT  ++Y  WI   ++
Sbjct: 226 VYTLASSYASWIQSKVT 242

>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex With A 1-(7-Sulphoamidoisoquinolinyl)guanidine Length = 276

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 131/270 (48%), Gaps = 20/270 (7%)
Query: 90  PSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITK 149
           P     +CG        +I+GG  +     PW AAI     RR   G   ++CGG+L++ 
Sbjct: 6   PEELKFQCGQKTLRPRFKIIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLMSP 61
Query: 150 RYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL--- 205
            +V++A HC       + E YIV++G   L   + G +  E+E  I+H+ Y SA  L   
Sbjct: 62  CWVISATHCFI--DYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHH 118
Query: 206 NDIALFRLRED----APLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP- 260
           NDIAL ++R      A  S  IQ ICLP   ++ ++     +  + G+G       L P 
Sbjct: 119 NDIALLKIRSKEGRCAQPSRTIQTICLP---SMYNDPQFGTSCEITGFGKENSTDYLYPE 175
Query: 261 KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 320
           +L+   + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  
Sbjct: 176 QLKMTVVKLISHRECQQPH-YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 234
Query: 321 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 350
           + G+VS+G+ CA    PGVYTRV++++ WI
Sbjct: 235 LTGIVSWGRGCALKDKPGVYTRVSHFLPWI 264

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 118/257 (45%), Gaps = 24/257 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I GG+ +  GQWPW  +I ++            +CGG+L+++++VL+AAHC   +     
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVH---------VCGGSLVSEQWVLSAAHCFPSEH--HK 49
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPII-HEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           E Y V +G+  L+  S    +   + II H  Y       DIAL +L      S  I+PI
Sbjct: 50  EAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPI 109
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFR-GPLSPK-LRHVQISVVDNPKCRQIFSNYGA 284
            LP      +         V GWG        L+PK L+ +++ ++    C  ++ N  A
Sbjct: 110 SLP---AANASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALY-NIDA 165
Query: 285 T------INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
                  + E+++CAG +             PL  P++  +Y+ G+VS+G  C     PG
Sbjct: 166 KPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPG 225
Query: 339 VYTRVTNYIQWIADNIS 355
           VYT  ++Y  WI   ++
Sbjct: 226 VYTLASSYASWIQSKVT 242

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 119/254 (46%), Gaps = 28/254 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWM--CGGALITKRYVLTAAHCVSPDTTG 165
           IVGG  + R +WPW   +  ++R R       WM  CGG+LI  ++VLTAAHC+ PD   
Sbjct: 1   IVGGQEAPRSKWPWQ--VSLRVRDRY------WMHFCGGSLIHPQWVLTAAHCLGPDVK- 51
Query: 166 EYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
             +   + V   +         + + R I+H Q+   +   DIAL  L E   +S  +  
Sbjct: 52  --DLATLRVQLREQHLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHT 109
Query: 226 ICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPK--LRHVQISVVDNPKCRQIFSNY 282
           + LP      SE F    P +V GWG      PL P   L+ V++ +++N  C   +   
Sbjct: 110 VMLP----PASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLG 165
Query: 283 GAT------INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGF 336
             T      I +++LCAG               PL+  ++  +   GVVS+ + CA+   
Sbjct: 166 AYTGDDVRIIRDDMLCAG--NSQRDSCKGDSGGPLVCKVNGTWLQAGVVSWDEGCAQPNR 223
Query: 337 PGVYTRVTNYIQWI 350
           PG+YTRVT Y+ WI
Sbjct: 224 PGIYTRVTYYLDWI 237

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 116/265 (43%), Gaps = 28/265 (10%)
Query: 97  CGVNA----FNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYV 152
           CGV A     +   RIV G  +  G WPW  ++  K             CGG+LI + +V
Sbjct: 1   CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGFH--------FCGGSLINENWV 52
Query: 153 LTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS-IEIERPIIHEQYTSARKLNDIALF 211
           +TAAHC      G     +V  G  D   +S  +  ++I +   + +Y S    NDI L 
Sbjct: 53  VTAAHC------GVTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLL 106
Query: 212 RLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVV 270
           +L   A  S  +  +CLP  ++   +     T    GWG T +    +P +L+   + ++
Sbjct: 107 KLSTAASFSQTVSAVCLPSASD---DFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLL 163
Query: 271 DNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK 330
            N  C++    +G  I + ++CAG               PL+   +  + ++G+VS+G  
Sbjct: 164 SNTNCKKY---WGTKIKDAMICAGA--SGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSS 218
Query: 331 CAEVGFPGVYTRVTNYIQWIADNIS 355
                 PGVY RVT  + W+   ++
Sbjct: 219 TCSTSTPGVYARVTALVNWVQQTLA 243

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score =  104 bits (259), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 116/252 (46%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT ++ G+WPW  ++        A G+   +CG +LI+  ++++AAHC   D    Y
Sbjct: 1   VVGGTDADEGEWPWQVSL-------HALGQGH-ICGASLISPNWLVSAAHCYIDDRGFRY 52
Query: 168 EPYIVHVGSIDLEDTSS----GVSIE-IERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
                    + L D S     GV    ++R I H  +       DIAL  L + A  S +
Sbjct: 53  SDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSM 112
Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY 282
           ++PICLP  +++       K  +V GWG T + G  +  L+  +I V++   C  +    
Sbjct: 113 VRPICLPDASHV---FPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQ- 168
Query: 283 GATINENILCAGVLXXXXXXXXXXXXXPLM-YPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
              I   ++C G L             PL     D + +  GVVS+G  CA+   PGVYT
Sbjct: 169 --QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYT 226
Query: 342 RVTNYIQWIADN 353
           R+  +  WI +N
Sbjct: 227 RLPLFRDWIKEN 238

>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With The Elastase Inhibitor Gr143783 Length = 241

Iteration: 1
 Score =  104 bits (259), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 119/253 (47%), Gaps = 19/253 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  +    WPW  ++ +      ++G+    CGG L+ + +VLTAAHC+S   T   
Sbjct: 1   VVGGEDARPNSWPWQVSLQYD-----SSGQWRHTCGGTLVDQSWVLTAAHCISSSRT--- 52
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSAR--KLNDIALFRLREDAPLSDLIQ 224
             Y V +G   L     G +++++ + ++H+ + S +    NDIAL +L     L+D IQ
Sbjct: 53  --YRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQ 110
Query: 225 PICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
             CLP    +   L      +V GWG     G     L+  Q+ VVD   C +    +G+
Sbjct: 111 LGCLPAAGTI---LPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKP-GWWGS 166
Query: 285 TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYTR 342
           T+  N++CAG                     + ++ + G+VS+G    C     P V+TR
Sbjct: 167 TVKTNMICAGGDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTR 226
Query: 343 VTNYIQWIADNIS 355
           V+NYI WI   I+
Sbjct: 227 VSNYIDWINSVIA 239

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 115/252 (45%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT ++ G+WPW  ++        A G+   +CG +LI+  ++++AAHC   D    Y
Sbjct: 1   VVGGTDADEGEWPWQVSL-------HALGQGH-ICGASLISPNWLVSAAHCYIDDRGFRY 52
Query: 168 EPYIVHVGSIDLEDTSS----GVSIE-IERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
                    + L D S     GV    ++R I H  +       DIAL  L + A  S +
Sbjct: 53  SDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSM 112
Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY 282
           ++PICLP  +++       K  +V GWG T + G  +  L+  +I V+    C  +    
Sbjct: 113 VRPICLPDASHV---FPAGKAIWVTGWGHTQYGGTGALILQKGEIRVIQQTTCENLLPQ- 168
Query: 283 GATINENILCAGVLXXXXXXXXXXXXXPLM-YPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
              I   ++C G L             PL     D + +  GVVS+G  CA+   PGVYT
Sbjct: 169 --QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYT 226
Query: 342 RVTNYIQWIADN 353
           R+  +  WI +N
Sbjct: 227 RLPLFRDWIKEN 238

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 137/277 (49%), Gaps = 34/277 (12%)
Query: 97  CGVNAFNSSK-RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTA 155
           CG+  ++  + RI GG  ++    PW AAI  K   RR+ G+  ++CGG LI+  ++L+A
Sbjct: 2   CGLRQYSQPQFRIKGGLFADIASHPWQAAIFAK--HRRSPGE-RFLCGGILISSCWILSA 58
Query: 156 AHCVSPDTTGEYEPYIVHVGSIDLEDTSSGV------SIEIERPIIHEQYTSARKLNDIA 209
           AHC         E +  H  ++ L  T   V        E+E+ I+H+++      NDIA
Sbjct: 59  AHCFQ-------ERFPPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIA 111
Query: 210 LFRLRED----APLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL-SPKLRH 264
           L +L+ D    A  S +++ +CLP   +L  +L +     ++G+G      P  S +L+ 
Sbjct: 112 LLQLKSDSSRCAQESSVVRTVCLP-PADL--QLPDWTECELSGYGKHEALSPFYSERLKE 168
Query: 265 VQISVVDNPKC-RQIFSNYGATINENILCAGVL------XXXXXXXXXXXXXPLMYPLDT 317
             + +  + +C  Q   N   T+ +N+LCAG                     PL+   D 
Sbjct: 169 AHVRLYPSSRCTSQHLLN--RTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDG 226
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
           +  ++G++S+G  C +   PGVYT+VTNY+ WI DN+
Sbjct: 227 RMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNM 263

>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar Spermatozoa Length = 263

Iteration: 1
 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 114/257 (44%), Gaps = 17/257 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  +E G WPWM ++   +     N +    CGG L+   +VLTAAHC       + 
Sbjct: 1   VVGGMSAEPGAWPWMVSLQIFMYH---NNRRYHTCGGILLNSHWVLTAAHCF--KNKKKV 55
Query: 168 EPYIVHVGSIDLEDTSSGVSIE------IERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
             + +  G+ ++   S+           +E  IIHE+Y S  ++NDIAL ++    P   
Sbjct: 56  TDWRLIFGANEVVWGSNKPVKPPLQERFVEEIIIHEKYVSGLEINDIALIKITPPVPCGP 115
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP-LSPKLRHVQISVVDNPKCRQIFS 280
            I P CLP            +T +V GWG    +GP  SP L+  +++++D   C     
Sbjct: 116 FIGPGCLPQFK--AGPPRAPQTCWVTGWGYLKEKGPRTSPTLQEARVALIDLELCNST-R 172
Query: 281 NYGATINENILCAGVLXXXXXXXXXXXXXPLMY--PLDTKYYIIGVVSYGKKCAEVGFPG 338
            Y   I    +CAG               PLM     +  + ++G+ S+G  CA    PG
Sbjct: 173 WYNGRIRSTNVCAGYPRGKIDTCQGDSGGPLMCRDRAENTFVVVGITSWGVGCARAKRPG 232
Query: 339 VYTRVTNYIQWIADNIS 355
           VYT    Y+ WIA  I 
Sbjct: 233 VYTSTWPYLNWIASKIG 249

>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex Length = 262

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 129/264 (48%), Gaps = 20/264 (7%)
Query: 96  ECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTA 155
           +CG        +I+GG  +     PW AAI     RR   G   ++CGG+LI+  +V++A
Sbjct: 4   QCGQKTLRPRFKIIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLISPCWVISA 59
Query: 156 AHCVSPDTTGEYEPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL---NDIALF 211
            HC       + E YIV++G   L   + G +  E+E  I+H+ Y SA  L   NDIAL 
Sbjct: 60  THCFI--DYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHHNDIALL 116
Query: 212 RLRED----APLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQ 266
           ++R      A  S  IQ I LP   ++ ++     +  + G+G       L P +L+   
Sbjct: 117 KIRSKEGRCAQPSRTIQTISLP---SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTV 173
Query: 267 ISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVS 326
           + ++ + +C+Q    YG+ +   +LCA                PL+  L  +  + G+VS
Sbjct: 174 VKLISHRECQQPH-YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS 232
Query: 327 YGKKCAEVGFPGVYTRVTNYIQWI 350
           +G+ CA    PGVYTRV++++ WI
Sbjct: 233 WGRGCALKDKPGVYTRVSHFLPWI 256

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 116/256 (45%), Gaps = 27/256 (10%)
Query: 106 KRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTG 165
           KRIVGG  ++ G  PW  AI      + A+G     CGG  I   ++LTAAHC+    T 
Sbjct: 320 KRIVGGKRAQLGDLPWQVAI------KDASGI---TCGGIYIGGCWILTAAHCLRASKTH 370
Query: 166 EYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
            Y+ +   V  I   D    V   ++R I HE Y +    NDIAL  +++D    D   P
Sbjct: 371 RYQIWTTVVDWIH-PDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELP 429
Query: 226 ICLPYDTNLRSELFE-RKTPFVAGWG-----STVFRGPLSPKLRHVQISVVDNPKCRQIF 279
             +P        LF+   T  V+GWG       VF       L+  ++ ++ N  C + +
Sbjct: 430 RSIPACVPWSPYLFQPNDTCIVSGWGREKDNERVF------SLQWGEVKLISN--CSKFY 481
Query: 280 SNYGATINENILCAGVLXXXXXXXXXXXXXPLM-YPLDTKYYIIGVVSYGKKCAEVGFPG 338
            N      + + CAG               PL+    +   Y+ GVVS+G+ C +  FPG
Sbjct: 482 GN--RFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPG 539
Query: 339 VYTRVTNYIQWIADNI 354
           VYT+V NY  WI+ ++
Sbjct: 540 VYTKVANYFDWISYHV 555

>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites Of Ser190 Trypsin-Like Serine Protease Drug Targets Length = 253

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 126/252 (50%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+L++  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLMSPCWVISATHCFI--DYPKK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL---NDIALFRLRED----APL 219
           E YIV++G   L   + G +  E+E  I+H+ Y SA  L   NDIAL ++R      A  
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQI 278
           S  IQ ICLP   ++ ++     +  + G+G       L P +L+   + ++ + +C+Q 
Sbjct: 114 SRTIQTICLP---SMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQP 170
Query: 279 FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
              YG+ +   +LCA                PL+  L  +  + G+VS+G+ CA    PG
Sbjct: 171 H-YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229
Query: 339 VYTRVTNYIQWI 350
           VYTRV++++ WI
Sbjct: 230 VYTRVSHFLPWI 241

>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A Multi- Centered Short Hydrogen Bonding Network At The Active Site Length = 245

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 126/252 (50%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+L++  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLMSPCWVISATHCFI--DYPKK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL---NDIALFRLRED----APL 219
           E YIV++G   L   + G +  E+E  I+H+ Y SA  L   NDIAL ++R      A  
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQI 278
           S  IQ ICLP   ++ ++     +  + G+G       L P +L+   + ++ + +C+Q 
Sbjct: 114 SRTIQTICLP---SMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQP 170
Query: 279 FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
              YG+ +   +LCA                PL+  L  +  + G+VS+G+ CA    PG
Sbjct: 171 H-YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229
Query: 339 VYTRVTNYIQWI 350
           VYTRV++++ WI
Sbjct: 230 VYTRVSHFLPWI 241

>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (Ala190 Upa) Length = 253

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 126/252 (50%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+L++  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYP--KK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL---NDIALFRLRED----APL 219
           E YIV++G   L   + G +  E+E  I+H+ Y SA  L   NDIAL ++R      A  
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQI 278
           S  IQ ICLP   ++ ++     +  + G+G       L P +L+   + ++ + +C+Q 
Sbjct: 114 SRTIQTICLP---SMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQP 170
Query: 279 FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
              YG+ +   +LCA                PL+  L  +  + G+VS+G+ CA    PG
Sbjct: 171 H-YYGSEVTTKMLCAADPQWKTDACQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229
Query: 339 VYTRVTNYIQWI 350
           VYTRV++++ WI
Sbjct: 230 VYTRVSHFLPWI 241

>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen Activator 2-[6- (3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino- Pyrrolidin-1- Yl)-3, 5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid Complex Length = 253

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 125/251 (49%), Gaps = 18/251 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+LI+  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLISPCWVISATHCFI--DYPKK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYT--SARKLNDIALFRLRED----APLS 220
           E YIV++G   L   + G +  E+E  I+H+ Y+  +    NDIAL ++R      A  S
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPS 114
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQIF 279
             IQ ICLP   ++ ++     +  + G+G       L P +L+   + ++ + +C+Q  
Sbjct: 115 RTIQTICLP---SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPH 171
Query: 280 SNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 339
             YG+ +   +LCA                PL+  L  +  + G+VS+G+ CA    PGV
Sbjct: 172 Y-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGV 230
Query: 340 YTRVTNYIQWI 350
           YTRV++++ WI
Sbjct: 231 YTRVSHFLPWI 241

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 24/250 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IV G  +  G WPW  ++  K             CGG+LI + +V+TAAHC      G  
Sbjct: 1   IVNGEEAVPGSWPWQVSLQDKTGFH--------FCGGSLINENWVVTAAHC------GVT 46
Query: 168 EPYIVHVGSIDLEDTSSGVS-IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
              +V  G  D   +S  +  ++I +   + +Y S    NDI L +L   A  S  +  +
Sbjct: 47  TSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAV 106
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQIFSNYGAT 285
           CLP  ++   +     T    GWG T +    +P +L+   + ++ N  C++    +G  
Sbjct: 107 CLPSASD---DFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKY---WGTK 160
Query: 286 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           I + ++CAG               PL+   +  + ++G+VS+G        PGVY RVT 
Sbjct: 161 IKDAMICAGA--SGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTA 218
Query: 346 YIQWIADNIS 355
            + W+   ++
Sbjct: 219 LVNWVQQTLA 228

>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score =  101 bits (252), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 126/252 (50%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+L++  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLMSPCWVISATHCFI--DYPKK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL---NDIALFRLRED----APL 219
           E YIV++G   L   + G +  E+E  I+H+ Y SA  L   NDIAL ++R      A  
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQI 278
           S  IQ ICLP   ++ ++     +  + G+G       L P +L+   + ++ + +C+Q 
Sbjct: 114 SRTIQTICLP---SMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQP 170
Query: 279 FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
              YG+ +   +LCA                PL+  L  +  + G+VS+G+ CA    PG
Sbjct: 171 H-YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229
Query: 339 VYTRVTNYIQWI 350
           VYTRV++++ WI
Sbjct: 230 VYTRVSHFLPWI 241

>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 126/252 (50%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+L++  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLMSPCWVISATHCFI--DYPKK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL---NDIALFRLRED----APL 219
           E YIV++G   L   + G +  E+E  I+H+ Y SA  L   NDIAL ++R      A  
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQI 278
           S  IQ ICLP   ++ ++     +  + G+G       L P +L+   + ++ + +C+Q 
Sbjct: 114 SRTIQTICLP---SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQP 170
Query: 279 FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
              YG+ +   +LCA                PL+  L  +  + G+VS+G+ CA    PG
Sbjct: 171 H-YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229
Query: 339 VYTRVTNYIQWI 350
           VYTRV++++ WI
Sbjct: 230 VYTRVSHFLPWI 241

>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 253

Iteration: 1
 Score =  101 bits (251), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 126/252 (50%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+L++  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLMSPCWVISATHCFI--DYPKK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL---NDIALFRLRED----APL 219
           E YIV++G   L   + G +  E+E  I+H+ Y SA  L   NDIAL ++R      A  
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQI 278
           S  IQ ICLP   ++ ++     +  + G+G       L P +L+   + ++ + +C+Q 
Sbjct: 114 SRTIQTICLP---SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQP 170
Query: 279 FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
              YG+ +   +LCA                PL+  L  +  + G+VS+G+ CA    PG
Sbjct: 171 HY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229
Query: 339 VYTRVTNYIQWI 350
           VYTRV++++ WI
Sbjct: 230 VYTRVSHFLPWI 241

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 116/250 (46%), Gaps = 27/250 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+      + 
Sbjct: 1   IVGGYNCKDGEVPWQALL--------INEENEGFCGGTILSEFYILTAAHCLY-----QA 47
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           + + V VG  + E    G ++ E+E  I H ++T      DIA+ RL+        + P 
Sbjct: 48  KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQIFSNYGAT 285
            LP      +         ++GWG+T   G   P +L+ +   V+   KC    ++Y   
Sbjct: 108 SLP-----TAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCE---ASYPGK 159
Query: 286 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           I  N+ C G L             P++        + GVVS+G  CA+   PGVYT+V N
Sbjct: 160 ITSNMFCVGFLEGGKDSCQGDSGGPVV----CNGQLQGVVSWGDGCAQKNKPGVYTKVYN 215
Query: 346 YIQWIADNIS 355
           Y++WI + I+
Sbjct: 216 YVKWIKNTIA 225

>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor E2 Length = 241

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 115/252 (45%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT ++ G+WPW  ++        A G+   +CG +LI+  ++++AAHC   D    Y
Sbjct: 1   VVGGTDADEGEWPWQVSL-------HALGQGH-ICGASLISPNWLVSAAHCYIDDRGFRY 52
Query: 168 EPYIVHVGSIDLEDTSS----GVSIE-IERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
                    + L D S     GV    ++R I H  +       DIAL  L + A  S +
Sbjct: 53  SDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSM 112
Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY 282
           ++PI LP  +++       K  +V GWG T + G  +  L+  +I V++   C  +    
Sbjct: 113 VRPISLPDASHV---FPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQ- 168
Query: 283 GATINENILCAGVLXXXXXXXXXXXXXPLM-YPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
              I   ++C G L             PL     D + +  GVVS+G  CA+   PGVYT
Sbjct: 169 --QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYT 226
Query: 342 RVTNYIQWIADN 353
           R+  +  WI +N
Sbjct: 227 RLPLFRDWIKEN 238

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 116/264 (43%), Gaps = 26/264 (9%)
Query: 90  PSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITK 149
           PS D  +  V       R+VGG  +    WPW  ++  +             CGG LI+ 
Sbjct: 544 PSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMH--------FCGGTLISP 595
Query: 150 RYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS-IEIERPIIHEQYTSARKLNDI 208
            +VLTAAHC+  + +     Y V +G+    +    V  IE+ R  +       RK  DI
Sbjct: 596 EWVLTAAHCL--EKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE----PTRK--DI 647
Query: 209 ALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST--VFRGPLSPKLRHVQ 266
           AL +L   A ++D + P CLP    +   + +R   F+ GWG T   F   L   L+  Q
Sbjct: 648 ALLKLSSPAVITDKVIPACLPSPNYV---VADRTECFITGWGETQGTFGAGL---LKEAQ 701
Query: 267 ISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVS 326
           + V++N  C + +      +    LCAG L             PL+     KY + GV S
Sbjct: 702 LPVIENKVCNR-YEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTS 760
Query: 327 YGKKCAEVGFPGVYTRVTNYIQWI 350
           +G  CA    PGVY RV+ ++ WI
Sbjct: 761 WGLGCARPNKPGVYVRVSRFVTWI 784

>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii From The Beetle Holotrichia Diomphalia Length = 394

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 121/268 (45%), Gaps = 21/268 (7%)
Query: 97  CGV-NAFNSSKRIVGGT-PSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
           CG+ N      +I G T  +E G++PWM A+  K      +G+ + +CGG+LI    VLT
Sbjct: 118 CGIRNERGLDFKITGQTNEAEYGEFPWMVAV-LKANVIPGSGEEQLVCGGSLIAPSVVLT 176
Query: 155 AAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIE---IERPIIHEQYTSARKLNDIALF 211
            AHCV+   +   +   +  G  D       +  +   I + IIH  +     +ND+AL 
Sbjct: 177 GAHCVNSYQS-NLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALL 235
Query: 212 RLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVF--RGPLSPKLRHVQISV 269
            L      +D I  ICLP     +S++F+    F +GWG   F  R   S  L+ +Q+  
Sbjct: 236 LLDRPLVQADNIGTICLPQ----QSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPT 291
Query: 270 VDNPKCRQIFSN----YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLD---TKYYII 322
           VD  KC+    N        +++  +CAG               PL  P     ++Y  +
Sbjct: 292 VDRDKCQADLRNTRLGLKFVLDQTFVCAGG-EQGKDTCTGDGGSPLFCPDPRNPSRYMQM 350
Query: 323 GVVSYGKKCAEVGFPGVYTRVTNYIQWI 350
           G+V++G  C +   PGVY  V ++  WI
Sbjct: 351 GIVAWGIGCGDENVPGVYANVAHFRNWI 378

>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2 Length = 328

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 125/269 (46%), Gaps = 28/269 (10%)
Query: 97  CGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAA 156
           CG++A  +  RI GG  ++ G +PW   I          G       GAL+   +VLTAA
Sbjct: 76  CGLSARTTGGRIYGGQKAKPGDFPWQVLI--------LGGT---TAAGALLYDNWVLTAA 124
Query: 157 HCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL-NDIALFRLRE 215
           H V  +   +     + +G++    +        E   IHE YT      NDIAL +L  
Sbjct: 125 HAVY-EQKHDASALDIRMGTLK-RLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNN 182
Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPF--VAGWGSTVFRGPLSPKLRHVQISVVDNP 273
              ++  I PICLP      +E F R       +GWG T  RG L+  L +V I +VD+ 
Sbjct: 183 KVVINSNITPICLP---RKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIPIVDHQ 238
Query: 274 KCRQIFSNY---GATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT---KYYIIGVVSY 327
           KC   +        ++  N+LCAG+               L++ LD+   ++++ G+VS+
Sbjct: 239 KCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVF-LDSETERWFVGGIVSW 297
Query: 328 GK-KCAEVGFPGVYTRVTNYIQWIADNIS 355
           G   C E G  GVYT+V NYI WI + IS
Sbjct: 298 GSMNCGEAGQYGVYTKVINYIPWIENIIS 326

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 114/249 (45%), Gaps = 30/249 (12%)
Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE 166
           R+VGG  +    WPW  ++  +  +          CGG LI+  +VLTAAHC+  + +  
Sbjct: 16  RVVGGCVAHPHSWPWQVSLRTRFGQH--------FCGGTLISPEWVLTAAHCL--EKSPR 65
Query: 167 YEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLI 223
              Y V +G+   ++LE       IE+ R  +       RK  DIAL +L   A ++D +
Sbjct: 66  PSSYKVILGAHQEVNLEPHVQ--EIEVSRLFLE----PTRK--DIALLKLSSPAVITDKV 117
Query: 224 QPICLPYDTNLRSELFERKTPFVAGWGST--VFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
            P CLP    +   + +R   F+ GWG T   F   L   L+  Q+ V++N  C + +  
Sbjct: 118 IPACLPSPNYM---VADRTECFITGWGETQGTFGAGL---LKEAQLPVIENKVCNR-YEF 170
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
               +    LCAG L             PL+     KY + GV S+G  CA    PGVY 
Sbjct: 171 LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYV 230
Query: 342 RVTNYIQWI 350
           RV+ ++ WI
Sbjct: 231 RVSRFVTWI 239

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 118/266 (44%), Gaps = 30/266 (11%)
Query: 90  PSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITK 149
           PS D  +  V       R+VGG  +    WPW  ++  +             CGG LI+ 
Sbjct: 3   PSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMH--------FCGGTLISP 54
Query: 150 RYVLTAAHCVSPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN 206
            +VLTAAHC+  + +     Y V +G+   ++LE       IE+ R  +       RK  
Sbjct: 55  EWVLTAAHCL--EKSPRPSSYKVILGAHQEVNLEPHVQ--EIEVSRLFLE----PTRK-- 104
Query: 207 DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST--VFRGPLSPKLRH 264
           DIAL +L   A ++D + P CLP    +   + +R   F+ GWG T   F   L   L+ 
Sbjct: 105 DIALLKLSSPAVITDKVIPACLPSPNYV---VADRTECFITGWGETQGTFGAGL---LKE 158
Query: 265 VQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGV 324
            Q+ V++N  C + +      +    LCAG L             PL+     KY + GV
Sbjct: 159 AQLPVIENKVCNR-YEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGV 217
Query: 325 VSYGKKCAEVGFPGVYTRVTNYIQWI 350
            S+G  CA    PGVY RV+ ++ WI
Sbjct: 218 TSWGLGCARPNKPGVYVRVSRFVTWI 243

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 118/266 (44%), Gaps = 30/266 (11%)
Query: 90  PSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITK 149
           PS D  +  V       R+VGG  +    WPW  ++  +             CGG LI+ 
Sbjct: 3   PSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMH--------FCGGTLISP 54
Query: 150 RYVLTAAHCVSPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN 206
            +VLTAAHC+  + +     Y V +G+   ++LE       IE+ R  +       RK  
Sbjct: 55  EWVLTAAHCL--EKSPRPSSYKVILGAHQEVNLEPHVQ--EIEVSRLFLE----PTRK-- 104
Query: 207 DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST--VFRGPLSPKLRH 264
           DIAL +L   A ++D + P CLP    +   + +R   F+ GWG T   F   L   L+ 
Sbjct: 105 DIALLKLSSPAVITDKVIPACLPSPNYV---VADRTECFITGWGETQGTFGAGL---LKE 158
Query: 265 VQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGV 324
            Q+ V++N  C + +      +    LCAG L             PL+     KY + GV
Sbjct: 159 AQLPVIENKVCNR-YEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGV 217
Query: 325 VSYGKKCAEVGFPGVYTRVTNYIQWI 350
            S+G  CA    PGVY RV+ ++ WI
Sbjct: 218 TSWGLGCARPNKPGVYVRVSRFVTWI 243

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 118/266 (44%), Gaps = 30/266 (11%)
Query: 90  PSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITK 149
           PS D  +  V       R+VGG  +    WPW  ++  +             CGG LI+ 
Sbjct: 1   PSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMH--------FCGGTLISP 52
Query: 150 RYVLTAAHCVSPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN 206
            +VLTAAHC+  + +     Y V +G+   ++LE       IE+ R  +       RK  
Sbjct: 53  EWVLTAAHCL--EKSPRPSSYKVILGAHQEVNLEPHVQ--EIEVSRLFLE----PTRK-- 102
Query: 207 DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST--VFRGPLSPKLRH 264
           DIAL +L   A ++D + P CLP    +   + +R   F+ GWG T   F   L   L+ 
Sbjct: 103 DIALLKLSSPAVITDKVIPACLPSPNYV---VADRTECFITGWGETQGTFGAGL---LKE 156
Query: 265 VQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGV 324
            Q+ V++N  C + +      +    LCAG L             PL+     KY + GV
Sbjct: 157 AQLPVIENKVCNR-YEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGV 215
Query: 325 VSYGKKCAEVGFPGVYTRVTNYIQWI 350
            S+G  CA    PGVY RV+ ++ WI
Sbjct: 216 TSWGLGCARPNKPGVYVRVSRFVTWI 241

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 118/266 (44%), Gaps = 30/266 (11%)
Query: 90  PSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITK 149
           PS D  +  V       R+VGG  +    WPW  ++  +             CGG LI+ 
Sbjct: 2   PSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMH--------FCGGTLISP 53
Query: 150 RYVLTAAHCVSPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN 206
            +VLTAAHC+  + +     Y V +G+   ++LE       IE+ R  +       RK  
Sbjct: 54  EWVLTAAHCL--EKSPRPSSYKVILGAHQEVNLEPHVQ--EIEVSRLFLE----PTRK-- 103
Query: 207 DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST--VFRGPLSPKLRH 264
           DIAL +L   A ++D + P CLP    +   + +R   F+ GWG T   F   L   L+ 
Sbjct: 104 DIALLKLSSPAVITDKVIPACLPSPNYV---VADRTECFITGWGETQGTFGAGL---LKE 157
Query: 265 VQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGV 324
            Q+ V++N  C + +      +    LCAG L             PL+     KY + GV
Sbjct: 158 AQLPVIENKVCNR-YEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGV 216
Query: 325 VSYGKKCAEVGFPGVYTRVTNYIQWI 350
            S+G  CA    PGVY RV+ ++ WI
Sbjct: 217 TSWGLGCARPNKPGVYVRVSRFVTWI 242

>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed By Crystal Structure Of Human Urokinase-Type Plasminogen Activator Complexed With A Cyclic Peptidyl Inhibitor, Upain-1 Length = 253

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+LI+  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLISPCWVISATHCFI--DYPKK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL---NDIALFRLRED----APL 219
           E YIV++G   L   + G +  E+E  I+H+ Y SA  L   NDIAL ++R      A  
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQI 278
           S  IQ I LP   ++ ++     +  + G+G       L P +L+   + ++ + +C+Q 
Sbjct: 114 SRTIQTIALP---SMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQP 170
Query: 279 FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
              YG+ +   +LCA                PL+  L  +  + G+VS+G+ CA    PG
Sbjct: 171 H-YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229
Query: 339 VYTRVTNYIQWI 350
           VYTRV++++ WI
Sbjct: 230 VYTRVSHFLPWI 241

>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase Length = 246

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+LI+  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLISPCWVISATHCFI--DYPKK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL---NDIALFRLRED----APL 219
           E YIV++G   L   + G +  E+E  I+H+ Y SA  L   NDIAL ++R      A  
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQI 278
           S  IQ I LP   ++ ++     +  + G+G       L P +L+   + ++ + +C+Q 
Sbjct: 114 SRTIQTIALP---SMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQP 170
Query: 279 FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
              YG+ +   +LCA                PL+  L  +  + G+VS+G+ CA    PG
Sbjct: 171 H-YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229
Query: 339 VYTRVTNYIQWI 350
           VYTRV++++ WI
Sbjct: 230 VYTRVSHFLPWI 241

>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH Inhibitors Length = 253

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+LI+  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLISPCWVISATHCFI--DYPKK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL---NDIALFRLRED----APL 219
           E YIV++G   L   + G +  E+E  I+H+ Y SA  L   NDIAL ++R      A  
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQI 278
           S  IQ I LP   ++ ++     +  + G+G       L P +L+   + ++ + +C+Q 
Sbjct: 114 SRTIQTIALP---SMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQP 170
Query: 279 FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
              YG+ +   +LCA                PL+  L  +  + G+VS+G+ CA    PG
Sbjct: 171 H-YYGSEVTTKMLCAADPQWKTDSCQGDAGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229
Query: 339 VYTRVTNYIQWI 350
           VYTRV++++ WI
Sbjct: 230 VYTRVSHFLPWI 241

>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa] Length = 252

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 130/265 (49%), Gaps = 33/265 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I GG  ++    PW AAI  K   RR+ G+  ++CGG LI+  ++L+AAHC         
Sbjct: 1   IKGGLFADIASHPWQAAIFAK--HRRSPGE-RFLCGGILISSCWILSAAHCFQ------- 50
Query: 168 EPYIVHVGSIDLEDTSSGV------SIEIERPIIHEQYTSARKLNDIALFRLRED----A 217
           E +  H  ++ L  T   V        E+E+ I+H+++      NDIAL +L+ D    A
Sbjct: 51  ERFPPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCA 110
Query: 218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL-SPKLRHVQISVVDNPKC- 275
             S +++ +CLP   +L  +L +     ++G+G      P  S +L+   + +  + +C 
Sbjct: 111 QESSVVRTVCLP-PADL--QLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCT 167
Query: 276 RQIFSNYGATINENILCAGVL------XXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK 329
            Q   N   T+ +N+LCAG                     PL+   D +  ++G++S+G 
Sbjct: 168 SQHLLN--RTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGL 225
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNI 354
            C +   PGVYT+VTNY+ WI DN+
Sbjct: 226 GCGQKDVPGVYTKVTNYLDWIRDNM 250

>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator Length = 247

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+LI+  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLISPCWVISATHCFI--DYPKK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL---NDIALFRLRED----APL 219
           E YIV++G   L   + G +  E+E  I+H+ Y SA  L   NDIAL ++R      A  
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQI 278
           S  IQ I LP   ++ ++     +  + G+G       L P +L+   + ++ + +C+Q 
Sbjct: 114 SRTIQTISLP---SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQP 170
Query: 279 FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
              YG+ +   +LCA                PL+  L  +  + G+VS+G+ CA    PG
Sbjct: 171 H-YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229
Query: 339 VYTRVTNYIQWI 350
           VYTRV++++ WI
Sbjct: 230 VYTRVSHFLPWI 241

>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram Spermatozoa Length = 290

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 117/256 (45%), Gaps = 17/256 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +  G WPWM ++         N +   +CGG+L+  +++LTAAHC       + 
Sbjct: 1   IIGGQDAAHGAWPWMVSLQIFTYH---NNRRYHVCGGSLLNSQWLLTAAHCFR--IKKKV 55
Query: 168 EPYIVHVGSIDLE-DTSSGVSIE-----IERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
             + +  G+ ++E  T+  V        +E+ IIHE+Y+++ + NDIAL ++        
Sbjct: 56  TDWRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGH 115
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP-LSPKLRHVQISVVDNPKCRQIFS 280
            I P CLP        +   +T +VAGWG         SP L+  ++ ++D   C     
Sbjct: 116 FIGPGCLPQFRAGPPRV--PQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNST-R 172
Query: 281 NYGATINENILCAGVLXXXXXXXXXXXXXPLMY--PLDTKYYIIGVVSYGKKCAEVGFPG 338
            Y   I    +CAG               PLM     +  Y ++G+ S+G  CA    PG
Sbjct: 173 WYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPG 232
Query: 339 VYTRVTNYIQWIADNI 354
           VYT   +Y+ WIA  I
Sbjct: 233 VYTSTWSYLNWIASKI 248

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 113/249 (45%), Gaps = 30/249 (12%)
Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE 166
           R+VGG  +    WPW  ++  +             CGG LI+  +VLTAAHC+  + +  
Sbjct: 17  RVVGGCVAHPHSWPWQVSLRTRFGMH--------FCGGTLISPEWVLTAAHCL--EKSPR 66
Query: 167 YEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLI 223
              Y V +G+   ++LE       IE+ R  +       RK  DIAL +L   A ++D +
Sbjct: 67  PSSYKVILGAHQEVNLEPHVQ--EIEVSRLFLE----PTRK--DIALLKLSSPAVITDKV 118
Query: 224 QPICLPYDTNLRSELFERKTPFVAGWGST--VFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
            P CLP    +   + +R   F+ GWG T   F   L   L+  Q+ V++N  C + +  
Sbjct: 119 IPACLPSPNYV---VADRTECFITGWGETQGTFGAGL---LKEAQLPVIENKVCNR-YEF 171
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
               +    LCAG L             PL+     KY + GV S+G  CA    PGVY 
Sbjct: 172 LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYV 231
Query: 342 RVTNYIQWI 350
           RV+ ++ WI
Sbjct: 232 RVSRFVTWI 240

>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And 5-Nitro-1h-Indole-2- Amidine Length = 246

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+LI+  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLISPCWVISATHCFI--DYPKK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL---NDIALFRLRED----APL 219
           E YIV++G   L   + G +  E+E  I+H+ Y SA  L   NDIAL ++R      A  
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQI 278
           S  IQ I LP   ++ ++     +  + G+G       L P +L+   + ++ + +C+Q 
Sbjct: 114 SRTIQTIALP---SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQP 170
Query: 279 FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
              YG+ +   +LCA                PL+  L  +  + G+VS+G+ CA    PG
Sbjct: 171 H-YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229
Query: 339 VYTRVTNYIQWI 350
           VYTRV++++ WI
Sbjct: 230 VYTRVSHFLPWI 241

>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex Length = 253

Iteration: 1
 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+LI+  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLISPCWVISATHCFI--DYPKK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL---NDIALFRLRED----APL 219
           E YIV++G   L   + G +  E+E  I+H+ Y SA  L   NDIAL ++R      A  
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQI 278
           S  IQ I LP   ++ ++     +  + G+G       L P +L+   + ++ + +C+Q 
Sbjct: 114 SRTIQTISLP---SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQP 170
Query: 279 FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
              YG+ +   +LCA                PL+  L  +  + G+VS+G+ CA    PG
Sbjct: 171 HY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229
Query: 339 VYTRVTNYIQWI 350
           VYTRV++++ WI
Sbjct: 230 VYTRVSHFLPWI 241

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 113/249 (45%), Gaps = 30/249 (12%)
Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE 166
           R+VGG  +    WPW  ++  +             CGG LI+  +VLTAAHC+  + +  
Sbjct: 17  RVVGGCVAHPHSWPWQVSLRTRFGMH--------FCGGTLISPEWVLTAAHCL--EKSPR 66
Query: 167 YEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLI 223
              Y V +G+   ++LE       IE+ R  +       RK  DIAL +L   A ++D +
Sbjct: 67  PSSYKVILGAHQEVNLEPHVQ--EIEVSRLFLE----PTRK--DIALLKLSSPAVITDKV 118
Query: 224 QPICLPYDTNLRSELFERKTPFVAGWGST--VFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
            P CLP    +   + +R   F+ GWG T   F   L   L+  Q+ V++N  C + +  
Sbjct: 119 IPACLPSPNYV---VADRTECFITGWGETQGTFGAGL---LKEAQLPVIENKVCNR-YEF 171
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
               +    LCAG L             PL+     KY + GV S+G  CA    PGVY 
Sbjct: 172 LNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYV 231
Query: 342 RVTNYIQWI 350
           RV+ ++ WI
Sbjct: 232 RVSRFVTWI 240

>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-2 Length = 403

Iteration: 1
 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 125/269 (46%), Gaps = 28/269 (10%)
Query: 97  CGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAA 156
           CG++A  +  +I GG  ++ G +PW   I          G       GAL+   +VLTAA
Sbjct: 151 CGLSARTTGGQIYGGQKAKPGDFPWQVLI--------LGGT---TAAGALLYDNWVLTAA 199
Query: 157 HCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL-NDIALFRLRE 215
           H V  +   +     + +G++    +        E   IHE YT      NDIAL +L  
Sbjct: 200 HAVY-EQKHDASALDIRMGTLK-RLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNN 257
Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPF--VAGWGSTVFRGPLSPKLRHVQISVVDNP 273
              ++  I PICLP      +E F R       +GWG T  RG L+  L +V I +VD+ 
Sbjct: 258 KVVINSNITPICLP---RKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIPIVDHQ 313
Query: 274 KCRQIFSNYG---ATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT---KYYIIGVVSY 327
           KC   +        ++  N+LCAG+               L++ LD+   ++++ G+VS+
Sbjct: 314 KCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVF-LDSETERWFVGGIVSW 372
Query: 328 GK-KCAEVGFPGVYTRVTNYIQWIADNIS 355
           G   C E G  GVYT+V NYI WI + IS
Sbjct: 373 GSMNCGEAGQYGVYTKVINYIPWIENIIS 401

>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With 2- Amino-5-Hydroxy-Benzimidazole Length = 245

Iteration: 1
 Score = 97.8 bits (242), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 125/252 (49%), Gaps = 20/252 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+L++  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLMSPCWVISATHCFI--DYPKK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL---NDIALFRLRED----APL 219
           E YIV++G   L   + G +  E+E  I+H+ Y SA  L   NDIAL ++R      A  
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDY-SADTLAHHNDIALLKIRSKEGRCAQP 113
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQI 278
           S  IQ I LP   ++ ++     +  + G+G       L P +L+   + ++ + +C+Q 
Sbjct: 114 SRTIQTIALP---SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQP 170
Query: 279 FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
              YG+ +   +LCA                PL+  L  +  + G+VS+G+ CA    PG
Sbjct: 171 H-YYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229
Query: 339 VYTRVTNYIQWI 350
           VYTRV++++ WI
Sbjct: 230 VYTRVSHFLPWI 241

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score = 97.8 bits (242), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 119/273 (43%), Gaps = 24/273 (8%)
Query: 91  SPDNNECGVNAFNSS---KRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALI 147
           SP    CG      +    RI+GG+ S  G  PW+AAI             +  C G+L+
Sbjct: 16  SPGRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIG----------DSFCAGSLV 65
Query: 148 TKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLN- 206
              +V++AAHC S     +    ++     +   T    +  IE+ I +  Y+     + 
Sbjct: 66  HTCWVVSAAHCFSHSPPRDSVSVVLGQHFFN-RTTDVTQTFGIEKYIPYTLYSVFNPSDH 124
Query: 207 DIALFRLRED----APLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFR-GPLSPK 261
           D+ L RL++     A  S  +QPICLP   +      + +   +AGWG         S  
Sbjct: 125 DLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQ---IAGWGHLDENVSGYSSS 181
Query: 262 LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 321
           LR   + +V + KC      YGA I+ N+LCAG               PL    +   Y+
Sbjct: 182 LREALVPLVADHKCSSP-EVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYL 240
Query: 322 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
            G++S+G  C  +  PGVYTRV NY+ WI D I
Sbjct: 241 YGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 273

>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North Atlantic Salmon At 1.61 Angstroms Resolution Length = 236

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 110/249 (44%), Gaps = 23/249 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  ++   WPW  ++ +K      +      CGG+LI + +V+TAAHCV    T   
Sbjct: 1   VVGGRVAQPNSWPWQISLQYKSGSSYYH-----TCGGSLIRQGWVMTAAHCVDSART--- 52
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLN--DIALFRLREDAPLSDLIQ 224
             + V +G  +L        I  +    IH  + S       DIAL RL   A L+  +Q
Sbjct: 53  --WRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQ 110
Query: 225 PICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG 283
              LP      +++     P ++ GWG T   GPLS  L+   +  VD+  C      +G
Sbjct: 111 LAALP----PSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSS-SGWWG 165
Query: 284 ATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSY--GKKCAEVGFPGVYT 341
           +T+   ++CAG               PL   ++  YY+ GV S+     C     P V+T
Sbjct: 166 STVKTTMVCAG--GGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFT 223
Query: 342 RVTNYIQWI 350
           RV+ YI W+
Sbjct: 224 RVSAYISWM 232

>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With Ala- Ala-phe-chloromethylketone Length = 224

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 116/249 (46%), Gaps = 31/249 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+ G P  RG  PW  A+         +G  +  CGG L+ +R+VLTAAHC       + 
Sbjct: 1   IIDGAPCARGSHPWQVAL--------LSGN-QLHCGGVLVNERWVLTAAHC-------KM 44
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
             Y VH+GS  L D  +   I+  +   H  Y++   +ND+ L +L   A LS +++ + 
Sbjct: 45  NEYTVHLGSDTLGDRRA-QRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVR 103
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATI 286
           LP     R E     T  V+GWG+T       P  L  V + ++    C +++ +    +
Sbjct: 104 LPS----RCEP-PGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDL---L 155
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTN 345
             ++LCAG+              PL+     +  + G+VS+G   C +   PGVYT+V  
Sbjct: 156 ENSMLCAGIPDSKKNACNGDSGGPLV----CRGTLQGLVSWGTFPCGQPNDPGVYTQVCK 211
Query: 346 YIQWIADNI 354
           + +WI D +
Sbjct: 212 FTKWINDTM 220

>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A Secretion Protein In E.Coli Length = 227

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 116/249 (46%), Gaps = 31/249 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+ G P  RG  PW  A+         +G  +  CGG L+ +R+VLTAAHC       + 
Sbjct: 1   IIDGAPCARGSHPWQVAL--------LSGN-QLHCGGVLVNERWVLTAAHC-------KM 44
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
             Y VH+GS  L D  +   I+  +   H  Y++   +ND+ L +L   A LS +++ + 
Sbjct: 45  NEYTVHLGSDTLGDRRA-QRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVR 103
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATI 286
           LP     R E     T  V+GWG+T       P  L  V + ++    C +++ +    +
Sbjct: 104 LPS----RCEP-PGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDL---L 155
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTN 345
             ++LCAG+              PL+     +  + G+VS+G   C +   PGVYT+V  
Sbjct: 156 ENSMLCAGIPDSKKNACNGDSGGPLV----CRGTLQGLVSWGTFPCGQPNDPGVYTQVCK 211
Query: 346 YIQWIADNI 354
           + +WI D +
Sbjct: 212 FTKWINDTM 220

>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The Extracellular Fragment Of Murine Par3 Length = 258

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 118/266 (44%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G  +E+G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCILYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  +H +Y     L+ DIAL +L++  P S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNVEKISM-LEKIYVHPRYNWRENLDRDIALLKLKKPVPFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP    + S L       V GWG+     T     + P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+   ++    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---ASTRIRITDNMFCAGFKVNDTKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRKGKYGFYTHVFRLKRWIQKVID 255

>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric Non-Inhibitory Antibody Fab40.Deltatrp Length = 257

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 113/253 (44%), Gaps = 21/253 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG+ S  G  PW+AAI             +  C G+L+   +V++AAHC S     + 
Sbjct: 1   IIGGSSSLPGSHPWLAAIYIG----------DSFCAGSLVHTCWVVSAAHCFSHSPPRDS 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLRED----APLSDL 222
              ++     +   T    +  IE+ I +  Y+     + D+ L RL++     A  S  
Sbjct: 51  VSVVLGQHFFN-RTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQF 109
Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFR-GPLSPKLRHVQISVVDNPKCRQIFSN 281
           +QPICLP   +      + +   +AGWG         S  LR   + +V + KC      
Sbjct: 110 VQPICLPEPGSTFPAGHKCQ---IAGWGHLDENVSGYSSSLREALVPLVADHKCSSP-EV 165
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
           YGA I+ N+LCAG               PL    +   Y+ G++S+G  C  +  PGVYT
Sbjct: 166 YGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYT 225
Query: 342 RVTNYIQWIADNI 354
           RV NY+ WI D I
Sbjct: 226 RVANYVDWINDRI 238

>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75 Length = 248

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 113/253 (44%), Gaps = 21/253 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG+ S  G  PW+AAI             +  C G+L+   +V++AAHC S     + 
Sbjct: 1   IIGGSSSLPGSHPWLAAIYIG----------DSFCAGSLVHTCWVVSAAHCFSHSPPRDS 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLRED----APLSDL 222
              ++     +   T    +  IE+ I +  Y+     + D+ L RL++     A  S  
Sbjct: 51  VSVVLGQHFFN-RTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQF 109
Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFR-GPLSPKLRHVQISVVDNPKCRQIFSN 281
           +QPICLP   +      + +   +AGWG         S  LR   + +V + KC      
Sbjct: 110 VQPICLPEPGSTFPAGHKCQ---IAGWGHLDENVSGYSSSLREALVPLVADHKCSSP-EV 165
Query: 282 YGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
           YGA I+ N+LCAG               PL    +   Y+ G++S+G  C  +  PGVYT
Sbjct: 166 YGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYT 225
Query: 342 RVTNYIQWIADNI 354
           RV NY+ WI D I
Sbjct: 226 RVANYVDWINDRI 238

>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine Thrombin Length = 259

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 117/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G  +E+G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCILYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  +H +Y     L+ DIAL +L++  P S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNVEKISM-LEKIYVHPRYNWRENLDRDIALLKLKKPVPFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP    + S L       V GWG+     T     + P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+   ++    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---ASTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V     WI   I 
Sbjct: 230 GCDRKGKYGFYTHVFRLKAWIQKVID 255

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 111/248 (44%), Gaps = 30/248 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  +    WPW  ++  +             CGG LI+  +VLTAAHC+  + +   
Sbjct: 18  VVGGCVAYPHSWPWQVSLRTRFGMH--------FCGGTLISPEWVLTAAHCL--EKSPRP 67
Query: 168 EPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQ 224
             Y V +G+   ++LE       IE+ R  +       RK  DIAL +L   A ++D + 
Sbjct: 68  SSYKVILGAHQEVNLEPHVQ--EIEVSRLFLE----PTRK--DIALLKLSSPAVITDKVI 119
Query: 225 PICLPYDTNLRSELFERKTPFVAGWGST--VFRGPLSPKLRHVQISVVDNPKCRQIFSNY 282
           P CLP    +   + +R   F+ GWG T   F   L   L   Q+ V++N  C + +   
Sbjct: 120 PACLPSPNYV---VADRTECFITGWGETQGTFGAGL---LMEAQLPVIENKVCNR-YEFL 172
Query: 283 GATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTR 342
              +    LCAG L             PL+     KY + GV S+G  CA    PGVY R
Sbjct: 173 NGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVR 232
Query: 343 VTNYIQWI 350
           V+ ++ WI
Sbjct: 233 VSRFVTWI 240

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 116/271 (42%), Gaps = 32/271 (11%)
Query: 97  CGVNAFNSS--KRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
           CG+  F+     +I  G P+++G  PW+A +         NG+P   CGG+L+   +++T
Sbjct: 143 CGLPKFSRKLMAQIFNGRPAQKGTTPWIAMLS------HLNGQP--FCGGSLLGSSWIVT 194
Query: 155 AAHCV------------SPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSA 202
           AAHC+              D     +  I+      L    +   + ++   +H QY   
Sbjct: 195 AAHCLHQSLDPEDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPN 254
Query: 203 RKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKL 262
              ND+AL  L E   L+  + PICLP        +       V+GWG   F       L
Sbjct: 255 TFENDVALVELLESPVLNAFVMPICLPEGPQQEGAMV-----IVSGWGKQ-FLQRFPETL 308
Query: 263 RHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT---KY 319
             ++I +VD+  C++ ++     +  +++CAG               P M  L+    ++
Sbjct: 309 MEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGP-MVTLNRERGQW 367
Query: 320 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 350
           Y++G VS+G  C +    GVY+ + +   WI
Sbjct: 368 YLVGTVSWGDDCGKKDRYGVYSYIHHNKDWI 398

>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant Length = 229

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y   RK NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNKRRKNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     
Sbjct: 131 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKL 187
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 253

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 117/260 (45%), Gaps = 26/260 (10%)
Query: 105 SKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTT 164
           S R+V G  +    W W  ++ ++      +G     CGG+LI   +V+TA HC+S   T
Sbjct: 9   SSRVVNGEDAVPYSWSWQVSLQYE-----KDGAFHHTCGGSLIAPDWVVTAGHCISTSRT 63
Query: 165 GEYEPYIVHVGSID---LEDTSSGVSIEIERPIIHEQYTS--ARKLNDIALFRLREDAPL 219
                Y V +G  D   L+ +   + I      +H  + S      NDIAL +L   A L
Sbjct: 64  -----YQVVLGEYDRSVLQGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQL 118
Query: 220 SDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQI 278
            D +Q   LP       ++   + P +++GWG     GPL  KL+   + VVD   C Q 
Sbjct: 119 GDKVQLANLP----PAGDILPNEAPCYISGWGRLYTGGPLPDKLQEALLPVVDYEHCSQ- 173
Query: 279 FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYP-LDTKYYIIGVVSY--GKKCAEVG 335
           +  +G T+ + ++CAG               PL  P  D  + + GV S+     C  + 
Sbjct: 174 YDWWGITVKKTMVCAG--GDTRSGCDGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIK 231
Query: 336 FPGVYTRVTNYIQWIADNIS 355
            P V+TRV+ +I WI + I+
Sbjct: 232 KPTVFTRVSAFIDWINETIA 251

>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure Length = 227

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 110/244 (45%), Gaps = 26/244 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  ++    P+MA + FK      +GK   +CGG L+ + +VLTAAHC+        
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFK-----TSGKSH-ICGGFLVREDFVLTAAHCLGSSIN--- 51
Query: 168 EPYIVHVGSID-LEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ + +E   +   I + RPI H  Y      NDI L +L   A ++D + PI
Sbjct: 52  ----VTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPI 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP      +E+       VAGWG      P + KL+ V + V    KC   F NY   I
Sbjct: 108 NLPRSL---AEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNY---I 161
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
               +CAG               PL+          G+VSYG+       P VYTR++++
Sbjct: 162 PFTQICAGDPSKRKNSFSGDSGGPLV----CNGVAQGIVSYGRNDGTT--PDVYTRISSF 215
Query: 347 IQWI 350
           + WI
Sbjct: 216 LSWI 219

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 116/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G PG YT V    +WI   I 
Sbjct: 230 GCDRDGKPGFYTHVFRLKKWIQKVID 255

>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE THROMBIN Length = 258

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 116/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G  +E+G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCILYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  +H +Y     L+ DIAL +L++  P S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNVEKISM-LEKIYVHPRYNWRENLDRDIALLKLKKPVPFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP    + S L       V GWG+     T     + P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+   ++    I +N+ CAG                     +  P + ++Y +G+VS G 
Sbjct: 173 CK---ASTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGA 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRKGKYGFYTHVFRLKRWIQKVID 255

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 115/260 (44%), Gaps = 24/260 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFS 280
           D I P+CLP      S L       V GWG+   +G  S  L+ V + +V+ P C+    
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKEKGQPSV-LQVVNLPIVERPVCK---D 168
Query: 281 NYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGKKCAEVG 335
           +    I +N+ CAG                     +  P + ++Y +G+VS+G+ C   G
Sbjct: 169 STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDG 228
Query: 336 FPGVYTRVTNYIQWIADNIS 355
             G YT V    +WI   I 
Sbjct: 229 KYGFYTHVFRLKKWIQKVID 248

>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase And Human Beta-Casomorphin-7 At Ph 5 Length = 240

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 121/254 (47%), Gaps = 22/254 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT ++R  WP   ++ ++     A+      CGG LI + +V+TAAHCV  + T   
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAH-----TCGGTLIRQNWVMTAAHCVDRELT--- 52
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTS--ARKLNDIALFRLREDAPLSDLIQ 224
             + V VG  +L ++  +   + +++ ++H  + +       DIAL RL +   L+  +Q
Sbjct: 53  --FRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQ 110
Query: 225 PICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG 283
              LP        +    +P ++ GWG T   G L+  L+   +  VD   C    S +G
Sbjct: 111 LGVLPR----AGTILRNNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSS-SSYWG 165
Query: 284 ATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYT 341
           +T+  +++CAG               PL   ++ +Y + GV S+  +  C     P V+T
Sbjct: 166 STVKNSMVCAGG-DGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFT 224
Query: 342 RVTNYIQWIADNIS 355
           RV+ YI WI + I+
Sbjct: 225 RVSAYISWINNVIA 238

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 29/288 (10%)
Query: 86  FTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGA 145
           F K    D  E  +       RIV G+ +E G  PW   +  K          E +CG +
Sbjct: 10  FEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRK-------SPQELLCGAS 62
Query: 146 LITKRYVLTAAHCV---SPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQY 199
           LI+ R+VLTAAHC+     D        +V +G       E     +S+ +E+  IH +Y
Sbjct: 63  LISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRY 121
Query: 200 TSARKLN-DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TV 253
                L+ DIAL +L++    SD I P+CLP      S L       V GWG+     T 
Sbjct: 122 NWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA 181
Query: 254 FRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-- 310
             G   P  L+ V + +V+ P C+    +    I +N+ CAG                  
Sbjct: 182 NVGKGQPSVLQVVNLPIVERPVCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDAGG 238
Query: 311 ---LMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              +  P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 239 PFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 286

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 29/288 (10%)
Query: 86  FTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGA 145
           F K    D  E  +       RIV G+ +E G  PW   +  K          E +CG +
Sbjct: 11  FEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRK-------SPQELLCGAS 63
Query: 146 LITKRYVLTAAHCV---SPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQY 199
           LI+ R+VLTAAHC+     D        +V +G       E     +S+ +E+  IH +Y
Sbjct: 64  LISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRY 122
Query: 200 TSARKLN-DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TV 253
                L+ DIAL +L++    SD I P+CLP      S L       V GWG+     T 
Sbjct: 123 NWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA 182
Query: 254 FRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-- 310
             G   P  L+ V + +V+ P C+    +    I +N+ CAG                  
Sbjct: 183 NVGKGQPSVLQVVNLPIVERPVCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGG 239
Query: 311 ---LMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              +  P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 240 PFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 287

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 116/267 (43%), Gaps = 29/267 (10%)
Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDT 163
           RIV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D 
Sbjct: 165 RIVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDK 217
Query: 164 TGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPL 219
                  +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    
Sbjct: 218 NFTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAF 276
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNP 273
           SD I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P
Sbjct: 277 SDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERP 336
Query: 274 KCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYG 328
            C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G
Sbjct: 337 VCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWG 393
Query: 329 KKCAEVGFPGVYTRVTNYIQWIADNIS 355
           + C   G  G YT V    +WI   I 
Sbjct: 394 EGCDRDGKYGFYTHVFRLKKWIQKVID 420

>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl Dipeptide Anilide Inhibitor With Elastase Length = 240

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 121/254 (47%), Gaps = 22/254 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT ++R  WP   ++ ++     A+      CGG LI + +V+TAAHCV  + T   
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAH-----TCGGTLIRQNWVMTAAHCVDRELT--- 52
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTS--ARKLNDIALFRLREDAPLSDLIQ 224
             + V VG  +L ++  +   + +++ ++H  + +       DIAL RL +   L+  +Q
Sbjct: 53  --FRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQ 110
Query: 225 PICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG 283
              LP        +    +P ++ GWG T   G L+  L+   +  VD   C    S +G
Sbjct: 111 LGVLPR----AGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSS-SSYWG 165
Query: 284 ATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYT 341
           +T+  +++CAG               PL   ++ +Y + GV S+  +  C     P V+T
Sbjct: 166 STVKNSMVCAGG-DGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFT 224
Query: 342 RVTNYIQWIADNIS 355
           RV+ YI WI + I+
Sbjct: 225 RVSAYISWINNVIA 238

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 29/288 (10%)
Query: 86  FTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGA 145
           F K    D  E  +       RIV G+ +E G  PW   +  K          E +CG +
Sbjct: 9   FEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRK-------SPQELLCGAS 61
Query: 146 LITKRYVLTAAHCV---SPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQY 199
           LI+ R+VLTAAHC+     D        +V +G       E     +S+ +E+  IH +Y
Sbjct: 62  LISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRY 120
Query: 200 TSARKLN-DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TV 253
                L+ DIAL +L++    SD I P+CLP      S L       V GWG+     T 
Sbjct: 121 NWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA 180
Query: 254 FRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-- 310
             G   P  L+ V + +V+ P C+    +    I +N+ CAG                  
Sbjct: 181 NVGKGQPSVLQVVNLPIVERPVCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGG 237
Query: 311 ---LMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              +  P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 238 PFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 29/288 (10%)
Query: 86  FTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGA 145
           F K    D  E  +       RIV G+ +E G  PW   +  K          E +CG +
Sbjct: 11  FEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRK-------SPQELLCGAS 63
Query: 146 LITKRYVLTAAHCV---SPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQY 199
           LI+ R+VLTAAHC+     D        +V +G       E     +S+ +E+  IH +Y
Sbjct: 64  LISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRY 122
Query: 200 TSARKLN-DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TV 253
                L+ DIAL +L++    SD I P+CLP      S L       V GWG+     T 
Sbjct: 123 NWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA 182
Query: 254 FRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-- 310
             G   P  L+ V + +V+ P C+    +    I +N+ CAG                  
Sbjct: 183 NVGKGQPSVLQVVNLPIVERPVCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGG 239
Query: 311 ---LMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              +  P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 240 PFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 287

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 29/288 (10%)
Query: 86  FTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGA 145
           F K    D  E  +       RIV G+ +E G  PW   +  K          E +CG +
Sbjct: 9   FEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRK-------SPQELLCGAS 61
Query: 146 LITKRYVLTAAHCV---SPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQY 199
           LI+ R+VLTAAHC+     D        +V +G       E     +S+ +E+  IH +Y
Sbjct: 62  LISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYEANIEKISM-LEKIYIHPRY 120
Query: 200 TSARKLN-DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TV 253
                L+ DIAL +L++    SD I P+CLP      S L       V GWG+     T 
Sbjct: 121 NWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA 180
Query: 254 FRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-- 310
             G   P  L+ V + +V+ P C+    +    I +N+ CAG                  
Sbjct: 181 NVGKGQPSVLQVVNLPIVERPVCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGG 237
Query: 311 ---LMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              +  P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 238 PFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 116/267 (43%), Gaps = 29/267 (10%)
Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDT 163
           RIV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D 
Sbjct: 49  RIVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDK 101
Query: 164 TGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPL 219
                  +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    
Sbjct: 102 NFTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAF 160
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNP 273
           SD I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P
Sbjct: 161 SDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERP 220
Query: 274 KCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYG 328
            C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G
Sbjct: 221 VCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWG 277
Query: 329 KKCAEVGFPGVYTRVTNYIQWIADNIS 355
           + C   G  G YT V    +WI   I 
Sbjct: 278 EGCDRDGKYGFYTHVFRLKKWIQKVID 304

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 29/288 (10%)
Query: 86  FTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGA 145
           F K    D  E  +       RIV G+ +E G  PW   +  K          E +CG +
Sbjct: 9   FEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRK-------SPQELLCGAS 61
Query: 146 LITKRYVLTAAHCV---SPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQY 199
           LI+ R+VLTAAHC+     D        +V +G       E     +S+ +E+  IH +Y
Sbjct: 62  LISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRY 120
Query: 200 TSARKLN-DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TV 253
                L+ DIAL +L++    SD I P+CLP      S L       V GWG+     T 
Sbjct: 121 NWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA 180
Query: 254 FRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-- 310
             G   P  L+ V + +V+ P C+    +    I +N+ CAG                  
Sbjct: 181 NVGKGQPSVLQVVNLPIVERPVCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGG 237
Query: 311 ---LMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              +  P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 238 PFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 29/288 (10%)
Query: 86  FTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGA 145
           F K    D  E  +       RIV G+ +E G  PW   +  K          E +CG +
Sbjct: 8   FEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRK-------SPQELLCGAS 60
Query: 146 LITKRYVLTAAHCV---SPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQY 199
           LI+ R+VLTAAHC+     D        +V +G       E     +S+ +E+  IH +Y
Sbjct: 61  LISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRY 119
Query: 200 TSARKLN-DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TV 253
                L+ DIAL +L++    SD I P+CLP      S L       V GWG+     T 
Sbjct: 120 NWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA 179
Query: 254 FRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-- 310
             G   P  L+ V + +V+ P C+    +    I +N+ CAG                  
Sbjct: 180 NVGKGQPSVLQVVNLPIVERPVCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGG 236
Query: 311 ---LMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              +  P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 237 PFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 284

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 116/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            CA  G  G YT V    +WI   I 
Sbjct: 230 GCARKGKYGFYTHVFRLKKWIQKVID 255

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 29/288 (10%)
Query: 86  FTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGA 145
           F K    D  E  +       RIV G+ +E G  PW   +  K          E +CG +
Sbjct: 9   FEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRK-------SPQELLCGAS 61
Query: 146 LITKRYVLTAAHCV---SPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQY 199
           LI+ R+VLTAAHC+     D        +V +G       E     +S+ +E+  IH +Y
Sbjct: 62  LISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRY 120
Query: 200 TSARKLN-DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TV 253
                L+ DIAL +L++    SD I P+CLP      S L       V GWG+     T 
Sbjct: 121 NWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA 180
Query: 254 FRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-- 310
             G   P  L+ V + +V+ P C+    +    I +N+ CAG                  
Sbjct: 181 NVGKGQPSVLQVVNLPIVERPVCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGG 237
Query: 311 ---LMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              +  P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 238 PFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 29/288 (10%)
Query: 86  FTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGA 145
           F K    D  E  +       RIV G+ +E G  PW   +  K          E +CG +
Sbjct: 15  FEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRK-------SPQELLCGAS 67
Query: 146 LITKRYVLTAAHCV---SPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQY 199
           LI+ R+VLTAAHC+     D        +V +G       E     +S+ +E+  IH +Y
Sbjct: 68  LISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRY 126
Query: 200 TSARKLN-DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TV 253
                L+ DIAL +L++    SD I P+CLP      S L       V GWG+     T 
Sbjct: 127 NWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA 186
Query: 254 FRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-- 310
             G   P  L+ V + +V+ P C+    +    I +N+ CAG                  
Sbjct: 187 NVGKGQPSVLQVVNLPIVERPVCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGG 243
Query: 311 ---LMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              +  P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 244 PFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 291

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 29/288 (10%)
Query: 86  FTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGA 145
           F K    D  E  +       RIV G+ +E G  PW   +  K          E +CG +
Sbjct: 15  FEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRK-------SPQELLCGAS 67
Query: 146 LITKRYVLTAAHCV---SPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQY 199
           LI+ R+VLTAAHC+     D        +V +G       E     +S+ +E+  IH +Y
Sbjct: 68  LISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRY 126
Query: 200 TSARKLN-DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TV 253
                L+ DIAL +L++    SD I P+CLP      S L       V GWG+     T 
Sbjct: 127 NWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA 186
Query: 254 FRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-- 310
             G   P  L+ V + +V+ P C+    +    I +N+ CAG                  
Sbjct: 187 NVGKGQPSVLQVVNLPIVERPVCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGG 243
Query: 311 ---LMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              +  P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 244 PFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 291

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 116/267 (43%), Gaps = 29/267 (10%)
Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDT 163
           RIV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D 
Sbjct: 1   RIVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDK 53
Query: 164 TGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPL 219
                  +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    
Sbjct: 54  NFTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAF 112
Query: 220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNP 273
           SD I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P
Sbjct: 113 SDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERP 172
Query: 274 KCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYG 328
            C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G
Sbjct: 173 VCK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWG 229
Query: 329 KKCAEVGFPGVYTRVTNYIQWIADNIS 355
           + C   G  G YT V    +WI   I 
Sbjct: 230 EGCDRDGKYGFYTHVFRLKKWIQKVID 256

>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With Porcine Elastase Length = 240

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 121/254 (47%), Gaps = 22/254 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT ++R  WP   ++ ++     A+      CGG LI + +V+TAAHCV  + T   
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAH-----TCGGTLIRQNWVMTAAHCVDRELT--- 52
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTS--ARKLNDIALFRLREDAPLSDLIQ 224
             + V VG  +L ++  +   + +++ ++H  + +       DIAL RL +   L+  +Q
Sbjct: 53  --FRVVVGEHNLNQNDGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQ 110
Query: 225 PICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG 283
              LP        +    +P ++ GWG T   G L+  L+   +  VD   C    S +G
Sbjct: 111 LGVLPR----AGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSS-SSYWG 165
Query: 284 ATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYT 341
           +T+  +++CAG               PL   ++ +Y + GV S+  +  C     P V+T
Sbjct: 166 STVKNSMVCAGG-DGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFT 224
Query: 342 RVTNYIQWIADNIS 355
           RV+ YI WI + I+
Sbjct: 225 RVSAYISWINNVIA 238

>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific Inhibitor Developed By Directed Evolution On Sgci Scaffold Length = 242

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 118/258 (45%), Gaps = 28/258 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I GG  ++ G +PW   I          G       GAL+   +VLTAAH V  +   + 
Sbjct: 1   IYGGQKAKPGDFPWQVLI--------LGGT---TAAGALLYDNWVLTAAHAVY-EQKHDA 48
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSDLIQPI 226
               + +G++    +        E   IHE YT      NDIAL +L     ++  I PI
Sbjct: 49  SALDIRMGTLK-RLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPI 107
Query: 227 CLPYDTNLRSELFERKTPF--VAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY-- 282
           CLP      +E F R       +GWG T  RG L+  L +V I +VD+ KC   +     
Sbjct: 108 CLP---RKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIPIVDHQKCTAAYEKPPY 163
Query: 283 -GATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT---KYYIIGVVSYGK-KCAEVGFP 337
              ++  N+LCAG+               L++ LD+   ++++ G+VS+G   C E G  
Sbjct: 164 PRGSVTANMLCAGLESGGKDSCRGDSGGALVF-LDSETERWFVGGIVSWGSMNCGEAGQY 222
Query: 338 GVYTRVTNYIQWIADNIS 355
           GVYT+V NYI WI + IS
Sbjct: 223 GVYTKVINYIPWIENIIS 240

>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2 Length = 242

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 118/258 (45%), Gaps = 28/258 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I GG  ++ G +PW   I          G       GAL+   +VLTAAH V  +   + 
Sbjct: 1   IYGGQKAKPGDFPWQVLI--------LGGT---TAAGALLYDNWVLTAAHAVY-EQKHDA 48
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSDLIQPI 226
               + +G++    +        E   IHE YT      NDIAL +L     ++  I PI
Sbjct: 49  SALDIRMGTLK-RLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPI 107
Query: 227 CLPYDTNLRSELFERKTPF--VAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY-- 282
           CLP      +E F R       +GWG T  RG L+  L +V I +VD+ KC   +     
Sbjct: 108 CLP---RKEAESFMRTDDIGTASGWGLTQ-RGFLARNLMYVDIPIVDHQKCTAAYEKPPY 163
Query: 283 -GATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT---KYYIIGVVSYGK-KCAEVGFP 337
              ++  N+LCAG+               L++ LD+   ++++ G+VS+G   C E G  
Sbjct: 164 PRGSVTANMLCAGLESGGKDSCRGDAGGALVF-LDSETERWFVGGIVSWGSMNCGEAGQY 222
Query: 338 GVYTRVTNYIQWIADNIS 355
           GVYT+V NYI WI + IS
Sbjct: 223 GVYTKVINYIPWIENIIS 240

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 114/260 (43%), Gaps = 24/260 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTAYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFS 280
           D I P+CLP      S L       V GWG+    G  S  L+ V + +V+ P C+    
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQPSV-LQVVNLPIVERPVCK---D 168
Query: 281 NYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGKKCAEVG 335
           +    I +N+ CAG                     +  P + ++Y +G+VS+G+ C   G
Sbjct: 169 STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDG 228
Query: 336 FPGVYTRVTNYIQWIADNIS 355
             G YT V    +WI   I 
Sbjct: 229 KYGFYTHVFRLKKWIQKVID 248

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 114/260 (43%), Gaps = 24/260 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFS 280
           D I P+CLP      S L       V GWG+    G  S  L+ V + +V+ P C+    
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETGQPSV-LQVVNLPIVERPVCK---D 168
Query: 281 NYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGKKCAEVG 335
           +    I +N+ CAG                     +  P + ++Y +G+VS+G+ C   G
Sbjct: 169 STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDG 228
Query: 336 FPGVYTRVTNYIQWIADNIS 355
             G YT V    +WI   I 
Sbjct: 229 KYGFYTHVFRLKKWIQKVID 248

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRKGKYGFYTHVFRLKKWIQKVID 255

>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin Length = 223

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 96/217 (44%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS-IEIERPIIHEQY 199
            CGG+LI  ++V++AAHC             V +G  ++         I   + I+H  Y
Sbjct: 24  FCGGSLINSQWVVSAAHCXKSGIQ-------VRLGEDNINVVEGNEQFISASKSIVHPSY 76
Query: 200 TSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLS 259
            S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G   
Sbjct: 77  NSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTSX 131
Query: 260 PK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
           P  L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     +
Sbjct: 132 PDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGXLEGGKDSCQGDSGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1 Length = 251

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 30/258 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV-------- 159
           I  G P+++G  PW+A +         NG+P   CGG+L+   +++TAAHC+        
Sbjct: 1   IFNGRPAQKGTTPWIAML------SHLNGQP--FCGGSLLGSSWIVTAAHCLHQSLDPKD 52
Query: 160 ----SPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRE 215
                 D     +  I+      L    +   + ++   +H QY      ND+AL  L E
Sbjct: 53  PTLRDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLE 112
Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKC 275
              L+  + PICLP        +       V+GWG   F       L  ++I +VD+  C
Sbjct: 113 SPVLNAFVMPICLPEGPQQEGAMV-----IVSGWGKQ-FLQRFPETLMEIEIPIVDHSTC 166
Query: 276 RQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLD---TKYYIIGVVSYGKKCA 332
           ++ ++     +  +++CAG               P M  L+    ++Y++G VS+G  C 
Sbjct: 167 QKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGP-MVTLNRERGQWYLVGTVSWGDDCG 225
Query: 333 EVGFPGVYTRVTNYIQWI 350
           +    GVY+ + +   WI
Sbjct: 226 KKDRYGVYSYIHHNKDWI 243

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+GK
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGK 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Mutant Length = 223

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     
Sbjct: 131 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKL 187
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 112/260 (43%), Gaps = 23/260 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFS 280
           D I P+CLP      S L       V GWG+          L+ V + +V+ P C+    
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWGQPSVLQVVNLPIVERPVCK---D 169
Query: 281 NYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGKKCAEVG 335
           +    I +N+ CAG                     +  P + ++Y +G+VS+G+ C   G
Sbjct: 170 STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDG 229
Query: 336 FPGVYTRVTNYIQWIADNIS 355
             G YT V    +WI   I 
Sbjct: 230 KYGFYTHVFRLKKWIQKVID 249

>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution Length = 224

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 105/237 (44%), Gaps = 25/237 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT +  G +P++ +I         NG P W CGG+L+    VLTAAHCVS      +
Sbjct: 1   IVGGTSASAGDFPFIVSI-------SRNGGP-W-CGGSLLNANTVLTAAHCVSGYAQSGF 51
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
           +   +  GS  L  TS G++  +    +H  Y+     ND+A+ +L    P    I    
Sbjct: 52  Q---IRAGS--LSRTSGGITSSLSSVRVHPSYSGNN--NDLAILKLSTSIPSGGNIGYAR 104
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQIFSNYGATI 286
           L       S+     +  VAGWG+T   G  +P  L  V + +V    CR  +    + I
Sbjct: 105 LAAS---GSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGT--SAI 159
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV 343
              + CAGV              P+   +D+   +IG VS+G  CA   + GVY  V
Sbjct: 160 TNQMFCAGVSSGGKDSCQGDSGGPI---VDSSNTLIGAVSWGNGCARPNYSGVYASV 213

>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between Pancreatic Secretory Inhibitor (Kazal Type) And Trypsinogen At 1.8 Angstroms Resolution. Structure Solution, Crystallographic Refinement And Preliminary Structural Interpretation Length = 229

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 30  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 81
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 82  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 136
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     
Sbjct: 137 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKL 193
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 194 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 227

>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT REFINEMENT Length = 223

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     
Sbjct: 131 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKL 187
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk Type Protease Inhibitor And Its Interaction With Trypsin Length = 223

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     
Sbjct: 131 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKL 187
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base Magnesium(Ii) Chelate Length = 228

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 29  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 80
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 81  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 135
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     
Sbjct: 136 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKL 192
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 193 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 226

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 121/288 (42%), Gaps = 29/288 (10%)
Query: 86  FTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGA 145
           F K    D  E  +       RIV G  +E G  PW   +  K          E +CG +
Sbjct: 28  FEKKQVQDQTEKELFESYIEGRIVEGQDAEVGLSPWQVMLFRK-------SPQELLCGAS 80
Query: 146 LITKRYVLTAAHCV---SPDTTGEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQY 199
           LI+ R+VLTAAHC+     D     +  +V +G       E     +S+ +++  IH +Y
Sbjct: 81  LISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISM-LDKIYIHPRY 139
Query: 200 TSARKLN-DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TV 253
                L+ DIAL +L+    LSD I P+CLP        L       V GWG+     T 
Sbjct: 140 NWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTT 199
Query: 254 FRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-- 310
               + P  L+ V + +V+ P C+   ++    I +N+ CAG                  
Sbjct: 200 SVAEVQPSVLQVVNLPLVERPVCK---ASTRIRITDNMFCAGYKPGEGKRGDACEGDSGG 256
Query: 311 ---LMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              +  P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 257 PFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 304

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 115/260 (44%), Gaps = 26/260 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFS 280
           D I P+CLP      S L       V GWG+   +G  S  L+ V + +V+ P C+    
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGN--LKGQPSV-LQVVNLPIVERPVCK---D 166
Query: 281 NYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGKKCAEVG 335
           +    I +N+ CAG                     +  P + ++Y +G+VS+G+ C   G
Sbjct: 167 STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDG 226
Query: 336 FPGVYTRVTNYIQWIADNIS 355
             G YT V    +WI   I 
Sbjct: 227 KYGFYTHVFRLKKWIQKVID 246

>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution Length = 224

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 106/237 (44%), Gaps = 25/237 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT +  G +P++ +I         NG P W CGG+L+    VLTAAHCVS      +
Sbjct: 1   IVGGTSASAGDFPFIVSI-------SRNGGP-W-CGGSLLNANTVLTAAHCVSGYAQSGF 51
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
           +   +  GS  L  TS G++  +    +H  Y+     ND+A+ +L    P    I    
Sbjct: 52  Q---IRAGS--LSRTSGGITSSLSSVRVHPSYSGNN--NDLAILKLSTSIPSGGNIGYAR 104
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQIFSNYGATI 286
           L       S+     +  VAGWG+T   G  +P  L  V + +V    CR  +    + I
Sbjct: 105 LAAS---GSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGT--SAI 159
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV 343
              + CAGV              P+   +D+   +IG VS+G  CA   + GVY  V
Sbjct: 160 TNQMFCAGVSSGGKDSCQGDXGGPI---VDSSNTLIGAVSWGNGCARPNYSGVYASV 213

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 116/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C + G  G YT V    +WI   I 
Sbjct: 230 GCRDDGKYGFYTHVFRLKKWIQKVID 255

>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase) Length = 223

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     
Sbjct: 131 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDXGGPVVCSGKL 187
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 119/266 (44%), Gaps = 25/266 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K   RR+ G+  ++CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFAK--HRRSPGE-RFLCGASLISDRWVLTAAHCLLYPPWDKN 57
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 58  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 116
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 117 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 176
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CA                      +  P + ++Y +G+VS+G+
Sbjct: 177 CK---DSTRIRITDNMFCAYYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 233
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 234 GCDRDGKYGFYTHVFRLKKWIQKVID 259

>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine Inhibitor Length = 223

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 106/249 (42%), Gaps = 31/249 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +V G P ++   P+ AA+               +CGG LI   +VLTAAHC  P+     
Sbjct: 1   LVHGGPCDKTSHPYQAAL---------YTSGHLLCGGVLIHPLWVLTAAHCKKPNLQ--- 48
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G  +L +  SS     + R +IH  Y +A    DI L RL   A LS+LIQP+
Sbjct: 49  ----VFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL 104
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            L  D +  +      +  + GWG T   G     ++   I +V   +C      Y   I
Sbjct: 105 PLERDCSANT-----TSCHILGWGKTA-DGDFPDTIQCAYIHLVSREECEHA---YPGQI 155
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTN 345
            +N+LCAG               PL+       ++ G+VS+G   C     PGVYT V  
Sbjct: 156 TQNMLCAGDEKYGKDSCQGDSGGPLV----CGDHLRGLVSWGNIPCGSKEKPGVYTNVCR 211
Query: 346 YIQWIADNI 354
           Y  WI   I
Sbjct: 212 YTNWIQKTI 220

>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In Complex With Trypsin Length = 223

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L   +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSNTLNNDIMLIKLKSAASLXSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     
Sbjct: 131 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKL 187
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A Engineered Mutant Trypsin Inhibitor Length = 223

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  + LP      S         ++GWG+T   G  
Sbjct: 76  YNSNTLNNDIMLIKLKSAASLNSRVASVSLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     
Sbjct: 131 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCAGKL 187
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEADSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes Length = 237

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 38  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 89
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 90  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 144
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     
Sbjct: 145 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKL 201
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 202 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 235

>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi Length = 223

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++    C+   S Y   I  N+ CAG L             P++     
Sbjct: 131 YPDVLKCLKAPILSTSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKL 187
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At 1.9-Angstroms Resolution Length = 224

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 26/244 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  S     P+MA +     +         +CGG LI++++VLTAAHC   + T   
Sbjct: 1   IIGGVESIPHSRPYMAHLDIVTEKGL-----RVICGGFLISRQFVLTAAHCKGREIT--- 52
Query: 168 EPYIVHVGSIDLED-TSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ D+    S+   I++E+ IIHE Y S   L+DI L +L +   L+  +  +
Sbjct: 53  ----VILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVV 108
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP  ++    +      + AGWG T  R P S  LR V++ ++D   C     +Y    
Sbjct: 109 PLPSPSDF---IHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKAC----VDYRYYE 161
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +  +C G               PL+          G+VSYG   A+   P ++TRV+ Y
Sbjct: 162 YKFQVCVGSPTTLRAAFMGDSGGPLLCAGVAH----GIVSYGHPDAKP--PAIFTRVSTY 215
Query: 347 IQWI 350
           + WI
Sbjct: 216 VPWI 219

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKIGFYTHVFRLKKWIQKVID 255

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKFGFYTHVFRLKKWIQKVID 255

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTTNVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACQGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And S195a Trypsin Length = 243

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 44  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 95
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 96  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 150
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     
Sbjct: 151 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDAGGPVVCSGKL 207
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 208 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 241

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247 Length = 243

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 44  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 95
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 96  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 150
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     
Sbjct: 151 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKL 207
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 208 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 241

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYEANIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To Ppack Length = 259

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 116/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXX---XXXXPLMY--PLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                  P +   P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEPDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYEANIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO Determine The Conformational Dynamics Of Trypsin Length = 223

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLIDSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L   +  I LP      S         ++GWG+T   G  
Sbjct: 76  YDSNTLNNDIMLIKLKSAASLDSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CAG L             P++     
Sbjct: 131 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKL 187
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt Length = 230

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 110/246 (44%), Gaps = 24/246 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT + +G++P+M         R  N + E  CGGAL  +  VLTAAHCVS   +G  
Sbjct: 1   VVGGTRAAQGEFPFMV--------RLINEENEGFCGGALYAQDIVLTAAHCVSG--SGNN 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
                  G +DL+ +SS V +   + +    +T      D AL +L          QPI 
Sbjct: 51  TSITATGGVVDLQ-SSSAVKVRSTKVLQAPGFTKETYGKDWALIKLA---------QPIN 100
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
            P      +  + + T  VAGWG+    G     L    +  V +  CR   S++    N
Sbjct: 101 QPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSS-SSFILVAN 159
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDT--KYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           E ++CAG                 M+  D   ++  +G+VS+G  CA  G+PGVYT V+ 
Sbjct: 160 E-MICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVST 218
Query: 346 YIQWIA 351
           +   IA
Sbjct: 219 FASAIA 224

>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6 Subunit Iii, A Highly Structured Truncated Zymogen E Length = 240

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 26/246 (10%)
Query: 119 WPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSID 178
           W W  ++ ++      +G     CGG+LI   +V+TA HC+S   T     Y V +G  D
Sbjct: 10  WSWQVSLQYE-----KDGAFHHTCGGSLIAPDWVVTAGHCISTSRT-----YQVVLGEYD 59
Query: 179 ---LEDTSSGVSIEIERPIIHEQYTS--ARKLNDIALFRLREDAPLSDLIQPICLPYDTN 233
              LE +   + I      +H  + S      NDIAL +L   A L D +Q   LP    
Sbjct: 60  RSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLP---- 115
Query: 234 LRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILC 292
              ++   + P +++GWG     GPL  KL+   +  VD   C Q +  +G T+ + ++C
Sbjct: 116 PAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQ-WDWWGITVKKTMVC 174
Query: 293 AGVLXXXXXXXXXXXXXPLMYP-LDTKYYIIGVVSY--GKKCAEVGFPGVYTRVTNYIQW 349
           AG               PL  P  D  + + GV S+     C  +  P V+TRV+ +I W
Sbjct: 175 AG--GDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDW 232
Query: 350 IADNIS 355
           I + I+
Sbjct: 233 IDETIA 238

>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To Atomic Resolution Length = 224

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 104/236 (44%), Gaps = 25/236 (10%)
Query: 109 VGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYE 168
           VGGT +  G +P++ +I         NG P W CGG+L+    VLTAAHCVS      ++
Sbjct: 2   VGGTSASAGDFPFIVSI-------SRNGGP-W-CGGSLLNANTVLTAAHCVSGYAQSGFQ 52
Query: 169 PYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICL 228
              +  GS  L  TS G++  +    +H  Y+     ND+A+ +L    P    I    L
Sbjct: 53  ---IRAGS--LSRTSGGITSSLSSVRVHPSYSGNN--NDLAILKLSTSIPSGGNIGYARL 105
Query: 229 PYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQIFSNYGATIN 287
                  S+     +  VAGWG+T   G  +P  L  V + +V    CR  +    + I 
Sbjct: 106 AAS---GSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGT--SAIT 160
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV 343
             + CAGV              P+   +D+   +IG VS+G  CA   + GVY  V
Sbjct: 161 NQMFCAGVSSGGKDSCQGDSGGPI---VDSSNTLIGAVSWGNGCARPNYSGVYASV 213

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FIENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 114/266 (42%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG      T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGPLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component B: A Novel, Glycosylated Two-chained Trypsin Length = 238

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 123/258 (47%), Gaps = 32/258 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +   ++PW  ++    RR+ ++      CGG++I  R+V+ AAHC+     GE 
Sbjct: 1   IVGGIEARPYEFPWQVSV----RRKSSDSH---FCGGSIINDRWVVCAAHCMQ----GEA 49
Query: 168 EPYIVHVGSIDLEDTSSGVSI----EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLI 223
              +  V  +   D+S+  ++    +++   ++E Y  A   ND+++ +          +
Sbjct: 50  PALVSLV--VGEHDSSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINV 107
Query: 224 QPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNY 282
            PIC P   N   +   RK+   +GWG+    G   P  LR+V +++  N  C  ++++ 
Sbjct: 108 GPICAPDPAN---DYVYRKSQ-CSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTS- 162
Query: 283 GATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK-----YYIIGVVSYGKKCAEVGFP 337
             TI ++++CA                    PL  K     + ++G+VS+G  CA  G+P
Sbjct: 163 -DTIYDDMICA--TDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCAS-GYP 218
Query: 338 GVYTRVTNYIQWIADNIS 355
           GVY+RV  +  WI D I+
Sbjct: 219 GVYSRVGFHAGWITDTIT 236

>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M Proneurosin Length = 223

Iteration: 1
 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE 166
           ++V G P ++   P+ AA+               +CGG LI   +VLTAAHC  P+    
Sbjct: 1   KLVHGGPCDKTSHPYQAAL---------YTSGHLLCGGVLIHPLWVLTAAHCKKPNLQ-- 49
Query: 167 YEPYIVHVGSIDLEDTSSGVSIE-IERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
                V +G  +L    S      + R +IH  Y +A    DI L RL   A LS+LIQP
Sbjct: 50  -----VFLGKHNLRQQESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQP 104
Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
           + L  D + ++      +  + GWG T   G     ++   I +V   +C      Y   
Sbjct: 105 LPLERDCSAQT-----TSCHILGWGKTA-DGDFPDTIQCAYIHLVSREECEHA---YPGQ 155
Query: 286 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVT 344
           I +N+LCAG               PL+       ++ G+VS+G   C     PGVYT V 
Sbjct: 156 ITQNMLCAGDEKYGKDSCQGDSGGPLV----CGDHLRGLVSWGNIPCGSKEKPGVYTNVC 211
Query: 345 NYIQWIADNI 354
            Y  WI   I
Sbjct: 212 RYTNWIQKTI 221

>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Complement C1s Protease Length = 333

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 122/277 (44%), Gaps = 41/277 (14%)
Query: 97  CGV--NAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
           CGV    F   +RI+GG+ ++   +PW                  W  GGALI + +VLT
Sbjct: 70  CGVPREPFEEKQRIIGGSDADIKNFPWQVFF-----------DNPW-AGGALINEYWVLT 117
Query: 155 AAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS--IEIERPIIHEQYT-------SARKL 205
           AAH V     G  EP  ++VGS  ++ +    S  +  E   IH  +             
Sbjct: 118 AAHVVE----GNREP-TMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFD 172
Query: 206 NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHV 265
           NDIAL RL++   +   + PICLP  T+    L +     ++GWG T  R   + +L+  
Sbjct: 173 NDIALVRLKDPVKMGPTVSPICLP-GTSSDYNLMDGDLGLISGWGRTEKRD-RAVRLKAA 230
Query: 266 QISVVDNPKCRQIFSNYGATINE------NILCAGVLXXXXX-XXXXXXXXPLMYPLD-T 317
           ++ V    KC+++         E      N++CAG                 +  P D T
Sbjct: 231 RLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKT 290
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
           K+Y  G+VS+G +C   G  G+YTRV NY+ WI   +
Sbjct: 291 KFYAAGLVSWGPQC---GTYGLYTRVKNYVDWIMKTM 324

>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To Pmsf Length = 222

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 112/253 (44%), Gaps = 39/253 (15%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +  G++P+  ++      R         CG +++    VLTAAHCV  D     
Sbjct: 1   IVGGKDAPVGKYPYQVSLRLSGSHR---------CGASILDNNNVLTAAHCV--DGLSNL 49
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
               VHVG+  L  + SG   ++E  ++++ Y      ND+AL  L      +DL+QPI 
Sbjct: 50  NRLKVHVGTNYL--SESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIK 107
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCR----QIFSNYG 283
           L  +     E  E     + GWGST   G     L+ +++ V    +C     ++  ++ 
Sbjct: 108 LSTN----DEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRVIDSHI 163
Query: 284 ATINE--NILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
            T+ +     C G                   PL      IG+VS+G  CA +G P VYT
Sbjct: 164 CTLTKRGEGACHG---------------DSGGPLVANGAQIGIVSFGSPCA-LGEPDVYT 207
Query: 342 RVTNYIQWIADNI 354
           RV++++ WI  N+
Sbjct: 208 RVSSFVSWINANL 220

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ +IAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRNIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt Length = 229

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 109/245 (44%), Gaps = 23/245 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT + +G++P+M         R  N + E  CGGAL  +  VLTAAHCVS   +G  
Sbjct: 1   VVGGTRAAQGEFPFMV--------RLINEENEGFCGGALYAQDIVLTAAHCVSG--SGNN 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
                  G +DL+ +SS V +   + +    +T      D AL +         L QPI 
Sbjct: 51  TSITATGGVVDLQ-SSSAVKVRSTKVLQAPGFTKETYGKDWALIK---------LAQPIN 100
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
            P      +  + + T  VAGWG+    G     L    +  V +  CR   S++    N
Sbjct: 101 QPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSS-SSFILVAN 159
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI-IGVVSYGKKCAEVGFPGVYTRVTNY 346
           E ++CAG               P+    +   ++ +G+VS+G+ CA  G  GVYT V+ +
Sbjct: 160 E-MICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTF 218
Query: 347 IQWIA 351
              IA
Sbjct: 219 ASAIA 223

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 113/266 (42%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS G 
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGA 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G  +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
              +  +V +G       E     +S+ +++  IH +Y     L+ DIAL +L+    LS
Sbjct: 54  FTVDDLLVRIGKHSRTRYERKVEKISM-LDKIYIHPRYNWKENLDRDIALLKLKRPIELS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP        L       V GWG+     T     + P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+   ++    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---ASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 113/266 (42%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS G 
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGA 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 115/266 (43%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G  +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
              +  +V +G       E     +S+ +++  IH +Y     L+ DIAL +L+    LS
Sbjct: 54  FTVDDLLVRIGKHSRTRYERKVEKISM-LDKIYIHPRYNWKENLDRDIALLKLKRPIELS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP        L       V GWG+     T     + P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+   ++    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---ASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
            C   G  G YT V    +WI   I 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of The Complex Formed Between Porcine Beta-trypsin And Mcti-a, A Trypsin Inhibitor Of Squash Family Length = 223

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 25/219 (11%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVG--SIDLEDTSSGVSIEIERPIIHE 197
            CGG+LI  ++V++AAHC        Y+  I V +G  +ID+ + +    I   + I H 
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSRIQVRLGEHNIDVLEGNEQF-INAAKIITHP 74
Query: 198 QYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP 257
            +      NDI L +L   A L+  +  + LP     RS         ++GWG+T   G 
Sbjct: 75  NFNGNTLDNDIMLIKLSSPATLNSRVATVSLP-----RSCAAAGTECLISGWGNTKSSGS 129
Query: 258 LSPKLRH-VQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLD 316
             P L   ++  V+ N  C+   S+Y   I  N++C G L             P++    
Sbjct: 130 SYPSLLQCLKAPVLSNSSCK---SSYPGQITGNMICVGFLQGGKDSCQGDSGGPVV---- 182
Query: 317 TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               + G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 183 CNGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a Length = 259

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 114/266 (42%), Gaps = 29/266 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS-----TVFRGPLSPK-LRHVQISVVDNPK 274
           D I P+CLP      S L       V GWG+     T   G   P  L+ V + +V+ P 
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXP-----LMYPLDTKYYIIGVVSYGK 329
           C+    +    I +N+ CAG                     +  P + ++Y +G+VS+G+
Sbjct: 173 CK---DSTRIRITDNMFCAGYKPDEGKRGDAAEGDSGGPFVMKSPFNNRWYQMGIVSWGE 229
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
                G  G YT V    +WI   I 
Sbjct: 230 GADRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A Para-Amidobenzylanmine P1 Group Carry A High Binding Efficiency Length = 223

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 109/249 (43%), Gaps = 31/249 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +V G P ++   P+ AA+         +G    +CGG LI   +VLTAAHC  P+     
Sbjct: 1   LVHGGPCDKTSHPYQAAL-------YTSG--HLLCGGVLIHPLWVLTAAHCKKPNLQ--- 48
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G  +L +  SS     + R +IH  Y +A    DI L RL   A LS+LIQP+
Sbjct: 49  ----VFLGKHNLGQQESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL 104
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            L  D + ++      +  + GWG T   G     ++   I +V   +C      Y   I
Sbjct: 105 PLERDCSAQT-----TSCHILGWGKTA-DGDFPDTIQCAYIHLVSREECEHA---YPGQI 155
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTN 345
            +N+LCAG               PL+       ++ G+VS+G   C     PGVYT V  
Sbjct: 156 TQNMLCAGDEKYGKDSCQGDSGGPLV----CGDHLRGLVSWGNIPCGSKEKPGVYTNVCR 211
Query: 346 YIQWIADNI 354
           Y  WI   I
Sbjct: 212 YTNWIQKTI 220

>pdb|2A31|A Chain A, Trypsin In Complex With Borate Length = 223

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 25/219 (11%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVG--SIDLEDTSSGVSIEIERPIIHE 197
            CGG+LI  ++V++AAHC        Y+  I V +G  +ID+ + +    I   + I H 
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSRIQVRLGEHNIDVLEGNEQF-INAAKIITHP 74
Query: 198 QYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP 257
            +      NDI L +L   A L+  +  + LP     RS         ++GWG+T   G 
Sbjct: 75  NFNGNTLDNDIMLIKLSSPATLNSRVATVSLP-----RSCAAAGTECLISGWGNTKSSGS 129
Query: 258 LSPKLRH-VQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLD 316
             P L   ++  V+ +  C+   S+Y   I  N++C G L             P++    
Sbjct: 130 SYPSLLQCLKAPVLSDSSCK---SSYPGQITGNMICVGFLEGGKDSCQGDSGGPVV---- 182
Query: 317 TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               + G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 183 CNGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin Length = 231

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 25/219 (11%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVG--SIDLEDTSSGVSIEIERPIIHE 197
            CGG+LI  ++V++AAHC        Y+  I V +G  +ID+ + +    I   + I H 
Sbjct: 32  FCGGSLINSQWVVSAAHC--------YKSRIQVRLGEHNIDVLEGNEQF-INAAKIITHP 82
Query: 198 QYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP 257
            +      NDI L +L   A L+  +  + LP     RS         ++GWG+T   G 
Sbjct: 83  NFNGNTLDNDIMLIKLSSPATLNSRVATVSLP-----RSCAAAGTECLISGWGNTKSSGS 137
Query: 258 LSPKLRH-VQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLD 316
             P L   ++  V+ +  C+   S+Y   I  N++C G L             P++    
Sbjct: 138 SYPSLLQCLKAPVLSDSSCK---SSYPGQITGNMICVGFLEGGKDSCQGDSGGPVV---- 190
Query: 317 TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               + G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 191 CNGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 229

>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor Pathway Inhibitor With Porcine Trypsin Length = 223

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 25/219 (11%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVG--SIDLEDTSSGVSIEIERPIIHE 197
            CGG+LI  ++V++AAHC        Y+  I V +G  +ID+ + +    I   + I H 
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSRIQVRLGEHNIDVLEGNEQF-INAAKIITHP 74
Query: 198 QYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP 257
            +      NDI L +L   A L+  +  + LP     RS         ++GWG+T   G 
Sbjct: 75  NFNGNTLDNDIMLIKLSSPATLNSRVATVSLP-----RSCAAAGTECLISGWGNTKSSGS 129
Query: 258 LSPKLRH-VQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLD 316
             P L   ++  V+ +  C+   S+Y   I  N++C G L             P++    
Sbjct: 130 SYPSLLQCLKAPVLSDSSCK---SSYPGQITGNMICVGFLEGGKDSCQGDSGGPVV---- 182
Query: 317 TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               + G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 183 CNGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of Complement Protease C1r Length = 329

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 115/278 (41%), Gaps = 45/278 (16%)
Query: 97  CG--VNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
           CG  VN     +RI+GG  ++ G +PW        R            GGAL+  R++LT
Sbjct: 77  CGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGR-----------GGGALLGDRWILT 125
Query: 155 AAHCVSPDTTGEYEPYI-----VHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLN--- 206
           AAH + P    E+E        V +G  ++E+     +  I R  +H  Y      N   
Sbjct: 126 AAHTLYPK---EHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEG 182
Query: 207 DIALFRLREDAPLSDLIQPICLP-----YDTNLRSELFERKTPFVAGWGSTVFRGPLSPK 261
           DIAL  L     L   + PICLP     YD  L          +V+G+G  V    ++  
Sbjct: 183 DIALLELENSVTLGPNLLPICLPDNDTFYDLGLMG--------YVSGFG--VMEEKIAHD 232
Query: 262 LRHVQISVVDNPKCRQIF--SNYGATINENILCAG--VLXXXXXXXXXXXXXPLMYPLDT 317
           LR V++ V +   C       N     ++N+ CAG   L              +  P   
Sbjct: 233 LRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTD 292
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           ++   G+VS+G  C+  G+ G YT+V NY+ WI   + 
Sbjct: 293 RWVATGIVSWGIGCSR-GY-GFYTKVLNYVDWIKKEME 328

>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease C1r Length = 328

Iteration: 1
 Score = 84.3 bits (207), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 115/278 (41%), Gaps = 45/278 (16%)
Query: 97  CG--VNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
           CG  VN     +RI+GG  ++ G +PW        R            GGAL+  R++LT
Sbjct: 77  CGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGR-----------GGGALLGDRWILT 125
Query: 155 AAHCVSPDTTGEYEPYI-----VHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLN--- 206
           AAH + P    E+E        V +G  ++E+     +  I R  +H  Y      N   
Sbjct: 126 AAHTLYPK---EHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEG 182
Query: 207 DIALFRLREDAPLSDLIQPICLP-----YDTNLRSELFERKTPFVAGWGSTVFRGPLSPK 261
           DIAL  L     L   + PICLP     YD  L          +V+G+G  V    ++  
Sbjct: 183 DIALLELENSVTLGPNLLPICLPDNDTFYDLGLMG--------YVSGFG--VMEEKIAHD 232
Query: 262 LRHVQISVVDNPKCRQIF--SNYGATINENILCAG--VLXXXXXXXXXXXXXPLMYPLDT 317
           LR V++ V +   C       N     ++N+ CAG   L              +  P   
Sbjct: 233 LRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDAGGVFAVRDPNTD 292
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           ++   G+VS+G  C+  G+ G YT+V NY+ WI   + 
Sbjct: 293 RWVATGIVSWGIGCSR-GY-GFYTKVLNYVDWIKKEME 328

>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between Salmon And Bovine Trypsins Length = 222

Iteration: 1
 Score = 84.3 bits (207), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 22/217 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDT-SSGVSIEIERPIIHEQ 198
            CGG+L+ + +V++AAHC        Y+  + V +G  +++ T  S   I   R I H  
Sbjct: 24  FCGGSLVNENWVVSAAHC--------YKSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPN 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y+S    NDI L +L + A L+  +QP+ LP        +       V+GWG+T+     
Sbjct: 76  YSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCT-----VSGWGNTMSSTAD 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
           S KL+ + I ++    C     +Y   I   + CAG L             P++   + +
Sbjct: 131 SDKLQCLNIPILSYSDCND---SYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGELQ 187
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               GVVS+G  CAE G PGVY +V  +  W+   ++
Sbjct: 188 ----GVVSWGYGCAEPGNPGVYAKVCIFSDWLTSTMA 220

>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin Length = 223

Iteration: 1
 Score = 84.3 bits (207), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 105/246 (42%), Gaps = 31/246 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT + +G++P+M  +                CGGAL  +  VLTAAHCVS   +G  
Sbjct: 1   VVGGTRAAQGEFPFMVRLSMG-------------CGGALYAQDIVLTAAHCVSG--SGNN 45
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
                  G +DL+ +SS V +   + +    Y    K  D AL +L          QPI 
Sbjct: 46  TSITATGGVVDLQ-SSSAVKVRSTKVLQAPGYNGTGK--DWALIKL---------AQPIN 93
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
            P      +  + + T  VAGWG+    G     L    +  V +  CR  + N     N
Sbjct: 94  QPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNE-LVAN 152
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDT--KYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           E I CAG                 M+  D   ++  +G+VS+G  CA  G+PGVYT V+ 
Sbjct: 153 EEI-CAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVST 211
Query: 346 YIQWIA 351
           +   IA
Sbjct: 212 FASAIA 217

>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex With Bovine Pancreatic Trypsin Inhibitor Length = 222

Iteration: 1
 Score = 84.3 bits (207), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 20/216 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGVSIEIERPIIHEQY 199
            CGG+L+ + +V++AAHC             V +G  +++ T  S   I   R I H  Y
Sbjct: 24  FCGGSLVNENWVVSAAHCYKSRVE-------VRLGEHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 200 TSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLS 259
           +S    NDI L +L + A L+  +QP+ LP        +       V+GWG+T+     S
Sbjct: 77  SSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCT-----VSGWGNTMSSTADS 131
Query: 260 PKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKY 319
            KL+ + I ++    C     +Y   I   + CAG L             P++   + + 
Sbjct: 132 NKLQCLNIPILSYSDCNN---SYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGELQ- 187
Query: 320 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              GVVS+G  CAE G PGVY +V  +  W+   ++
Sbjct: 188 ---GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon Length = 222

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 22/217 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDT-SSGVSIEIERPIIHEQ 198
            CGG+L+ + +V++AAHC        Y+  + V +G  +++ T  S   I   R I H  
Sbjct: 24  FCGGSLVNENWVVSAAHC--------YKSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPN 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y+S    NDI L +L + A L+  +QP+ LP        +       V+GWG+T+     
Sbjct: 76  YSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCT-----VSGWGNTMSSTAD 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
           S KL+ + I ++    C     +Y   I   + CAG L             P++   + +
Sbjct: 131 SNKLQCLNIPILSYSDCNN---SYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGELQ 187
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               GVVS+G  CAE G PGVY +V  +  W+   ++
Sbjct: 188 ----GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Length = 223

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 25/219 (11%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVG--SIDLEDTSSGVSIEIERPIIHE 197
            CGG+LI  ++V++AAHC        Y+  I V +G  +ID+ + +    I   + I H 
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSRIQVRLGEHNIDVLEGNEQF-INAAKIITHP 74
Query: 198 QYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP 257
            +      NDI L +L   A L   +  + LP     RS         ++GWG+T   G 
Sbjct: 75  NFNGNTLDNDIMLIKLSSPATLXSRVATVSLP-----RSCAAAGTECLISGWGNTKSSGS 129
Query: 258 LSPKLRH-VQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLD 316
             P L   ++  V+ +  C+   S+Y   I  N++C G L             P++    
Sbjct: 130 SYPSLLQCLKAPVLSDSSCK---SSYPGQITGNMICVGFLEGGKDSCQGDSGGPVV---- 182
Query: 317 TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               + G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 183 CNGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary Complex With Porcine Trypsin Length = 223

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 25/219 (11%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVG--SIDLEDTSSGVSIEIERPIIHE 197
            CGG+LI  ++V++AAHC        Y+  I V +G  +ID+ + +    I   + I H 
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSRIQVRLGEHNIDVLEGNEQF-INAAKIITHP 74
Query: 198 QYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP 257
            +      NDI L +L   A L+  +  + LP     RS         ++GWG+T   G 
Sbjct: 75  NFNGNTLDNDIMLIKLSSPATLNSRVATVSLP-----RSCAAAGTECLISGWGNTKSSGS 129
Query: 258 LSPKLRH-VQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLD 316
             P L   ++  V+ +  C+   S Y   I  N++C G L             P++    
Sbjct: 130 SYPSLLQCLKAPVLSDSSCK---SAYPGQITGNMICVGFLEGGKDSCQGDSGGPVV---- 182
Query: 317 TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               + G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 183 CNGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 221

>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected Phosphorylation Of Tyrosine 151 Length = 224

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 108/251 (43%), Gaps = 33/251 (13%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   E    P+  ++                CGG+LI +++V++A HC        Y
Sbjct: 1   IVGGYNCEENSVPYQVSLNSGYH----------FCGGSLINEQWVVSAGHC--------Y 42
Query: 168 EPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
           +  I V +G  ++E        I   + I H QY      NDI L +L   A ++  +  
Sbjct: 43  KSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVST 102
Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQIFSNYGA 284
           I LP      +         ++GWG+T   G   P +L+ +   V+   KC    ++Y  
Sbjct: 103 ISLP-----TAPPATGTKCLISGWGNTASSGADXPDELQCLDAPVLSQAKCE---ASYPG 154
Query: 285 TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
            I  N+ C G L             P++        + GVVS+G  CA+   PGVYT+V 
Sbjct: 155 KITSNMFCVGFLEGGKDSCQGDSGGPVV----CNGQLQGVVSWGDGCAQKNKPGVYTKVY 210
Query: 345 NYIQWIADNIS 355
           NY++WI + I+
Sbjct: 211 NYVKWIKNTIA 221

>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A Second Crystal Form Length = 237

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 22/217 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDT-SSGVSIEIERPIIHEQ 198
            CGG+L+ + +V++AAHC        Y+  + V +G  +++ T  S   I   R I H  
Sbjct: 39  FCGGSLVNENWVVSAAHC--------YKSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPN 90
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y+S    NDI L +L + A L+  +QP+ LP        +       V+GWG+T+     
Sbjct: 91  YSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCT-----VSGWGNTMSSTAD 145
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
           S KL+ + I ++    C     +Y   I   + CAG L             P++   + +
Sbjct: 146 SNKLQCLNIPILSYSDCNN---SYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGELQ 202
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               GVVS+G  CAE G PGVY +V  +  W+   ++
Sbjct: 203 ----GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 235

>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd] Length = 228

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 24/248 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  ++    P+MA +  +I    +  K    CGG LI + +VLTAAHC         
Sbjct: 1   IIGGHEAKPHSRPYMAYL--QIMDEYSGSKK---CGGFLIREDFVLTAAHCSGSKIQ--- 52
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++++      I  + + I H  Y S    NDI L +L+  A  S  ++P+
Sbjct: 53  ----VTLGAHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPL 108
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP   N++ +  +    +VAGWG     G  S  L+ V+++V ++ KC     NY    
Sbjct: 109 NLP-RRNVKVKPGD--VCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKA 165
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
           NE  +CAG               PL+     K    G+VSYG+       P  +T+V+ +
Sbjct: 166 NE--ICAGDPKIKRASFRGDSGGPLV----CKKVAAGIVSYGQNDGST--PRAFTKVSTF 217
Query: 347 IQWIADNI 354
           + WI   +
Sbjct: 218 LSWIKKTM 225

>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations, X-Ray Structures And Association Constant Measurements Length = 242

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 22/217 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDT-SSGVSIEIERPIIHEQ 198
            CGG+L+ + +V++AAHC        Y+  + V +G  +++ T  S   I   R I H  
Sbjct: 44  FCGGSLVNENWVVSAAHC--------YKSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPN 95
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y+S    NDI L +L + A L+  +QP+ LP        +       V+GWG+T+     
Sbjct: 96  YSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCT-----VSGWGNTMSSTAD 150
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
           S KL+ + I ++    C     +Y   I   + CAG L             P++   + +
Sbjct: 151 SNKLQCLNIPILSYSDCNN---SYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGELQ 207
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               GVVS+G  CAE G PGVY +V  +  W+   ++
Sbjct: 208 ----GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 240

>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With Benzamidine Length = 223

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 105/246 (42%), Gaps = 31/246 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT + +G++P+M  +                CGGAL  +  VLTAAHCVS   +G  
Sbjct: 1   VVGGTRAAQGEFPFMVRLSMG-------------CGGALYAQDIVLTAAHCVS--GSGNN 45
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
                  G +DL+ +SS V +   + +    Y    K  D AL +L          QPI 
Sbjct: 46  TSITATGGVVDLQ-SSSAVKVRSTKVLQAPGYNGTGK--DWALIKL---------AQPIN 93
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
            P      +  + + T  VAGWG+    G     L    +  V +  CR  + N     N
Sbjct: 94  QPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNE-LVAN 152
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDT--KYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           E I CAG                 M+  D   ++  +G+VS+G  CA  G+PGVYT V+ 
Sbjct: 153 EEI-CAGYPDTGGVDPCQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVST 211
Query: 346 YIQWIA 351
           +   IA
Sbjct: 212 FASAIA 217

>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum Salmon Length = 222

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 20/216 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGVSIEIERPIIHEQY 199
            CGG+L+ + +V++AAHC             V +G  +++ T  S   I   R I H  Y
Sbjct: 24  FCGGSLVNENWVVSAAHCYKSRVA-------VRLGEHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 200 TSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLS 259
           +S    NDI L +L + A L+  +QP+ LP        +       V+GWG+T+      
Sbjct: 77  SSYNIDNDIMLIKLSKPATLNTYVQPVALPSSCAPAGTMCT-----VSGWGNTMSSTADG 131
Query: 260 PKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKY 319
            KL+ + I ++    C     +Y   I   + CAG L             P++   + + 
Sbjct: 132 DKLQCLNIPILSYSDCNN---SYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGELQ- 187
Query: 320 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              GVVS+G  CAE G PGVY +V  +  W+   ++
Sbjct: 188 ---GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon Length = 220

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 22/217 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDT-SSGVSIEIERPIIHEQ 198
            CGG+L+ + +V++AAHC        Y+  + V +G  +++ T  S   I   R I H  
Sbjct: 24  FCGGSLVNENWVVSAAHC--------YKSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPN 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y+S    NDI L +L + A L+  +QP+ LP        +       V+GWG+T+     
Sbjct: 76  YSSYNIDNDIMLIKLSKSATLNTYVQPVALPSSCAPAGTMCT-----VSGWGNTMSSTAD 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
             KL+ + I ++    C     +Y   I   + CAG L             P++   + +
Sbjct: 131 KNKLQCLNIPILSYSDCNN---SYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGELQ 187
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               GVVS+G  CAE G PGVY +V  +  W+   ++
Sbjct: 188 ----GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of Complement Protease C1r Length = 399

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 115/278 (41%), Gaps = 45/278 (16%)
Query: 97  CG--VNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
           CG  VN     ++I+GG  ++ G +PW        R            GGAL+  R++LT
Sbjct: 145 CGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHGRG-----------GGALLGDRWILT 193
Query: 155 AAHCVSPDTTGEYEPYI-----VHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLN--- 206
           AAH + P    E+E        V +G  ++E+     +  I R  +H  Y      N   
Sbjct: 194 AAHTLYPK---EHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEG 250
Query: 207 DIALFRLREDAPLSDLIQPICLP-----YDTNLRSELFERKTPFVAGWGSTVFRGPLSPK 261
           DIAL  L     L   + PICLP     YD  L          +V+G+G  V    ++  
Sbjct: 251 DIALLELENSVTLGPNLLPICLPDNDTFYDLGLMG--------YVSGFG--VMEEKIAHD 300
Query: 262 LRHVQISVVDNPKCRQIF--SNYGATINENILCAG--VLXXXXXXXXXXXXXPLMYPLDT 317
           LR V++ V +   C       N     ++N+ CAG   L              +  P   
Sbjct: 301 LRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTD 360
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           ++   G+VS+G  C+  G+ G YT+V NY+ WI   + 
Sbjct: 361 RWVATGIVSWGIGCSR-GY-GFYTKVLNYVDWIKKEME 396

>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin At 1.7 Angstroms Resolution Length = 223

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 104/246 (42%), Gaps = 31/246 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT + +G++P+M  +                CGGAL  +  VLTAAHCVS   +G  
Sbjct: 1   VVGGTRAAQGEFPFMVRLSMG-------------CGGALYAQDIVLTAAHCVSG--SGNN 45
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
                  G +DL+   SG ++++          S + L         +D  L  L QPI 
Sbjct: 46  TSITATGGVVDLQ---SGAAVKVR---------STKVLQAPGYNGTGKDWALIKLAQPIN 93
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
            P      +  + + T  VAGWG+    G     L    +  V +  CR  + N     N
Sbjct: 94  QPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNE-LVAN 152
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDT--KYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           E I CAG                 M+  D   ++  +G+VS+G  CA  G+PGVYT V+ 
Sbjct: 153 EEI-CAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVST 211
Query: 346 YIQWIA 351
           +   IA
Sbjct: 212 FASAIA 217

>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (bpti) Length = 224

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 108/251 (43%), Gaps = 33/251 (13%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   E    P+  ++                CGG+LI +++V++A HC        Y
Sbjct: 1   IVGGYNCEENSVPYQVSLNSGYH----------FCGGSLINEQWVVSAGHC--------Y 42
Query: 168 EPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
           +  I V +G  ++E        I   + I H QY      NDI L +L   A ++  +  
Sbjct: 43  KSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINAHVST 102
Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQIFSNYGA 284
           I LP      +         ++GWG+T   G   P +L+ +   V+   KC    ++Y  
Sbjct: 103 ISLP-----TAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCE---ASYPG 154
Query: 285 TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
            I  N+ C G L             P++        + GVVS+G  CA+   PGVYT+V 
Sbjct: 155 KITSNMFCVGFLEGGKDSCQGDAGGPVV----CNGQLQGVVSWGDGCAQKNKPGVYTKVY 210
Query: 345 NYIQWIADNIS 355
           NY++WI + I+
Sbjct: 211 NYVKWIKNTIA 221

>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9 Angstroms Resolution Length = 226

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 26/244 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GGT S+    P+MA +        +NG P   CGG LI + +VLTAAHC     T   
Sbjct: 1   IIGGTESKPHSRPYMAYLEIVT----SNG-PSKFCGGFLIRRNFVLTAAHCAGRSIT--- 52
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++ E+  +   +E+ +   H +Y ++   +DI L +L+E A L+  +  +
Sbjct: 53  ----VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTL 108
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
             P   N    +   +   VAGWG T    P S  L+ V++ ++D   C   F ++   +
Sbjct: 109 PFPSQFNF---VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSH-FRDFDHNL 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
               LC G               PL+     +    G+VSYG+  A+   P V+TR+++Y
Sbjct: 165 Q---LCVGNPRKTKSAFKGDSGGPLLCAGVAQ----GIVSYGRSDAKP--PAVFTRISHY 215
Query: 347 IQWI 350
             WI
Sbjct: 216 RPWI 219

>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum Length = 230

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 119/249 (47%), Gaps = 27/249 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+ G  +  G +P+ A +   ++ +R      W CGG+LI  +++LTAAHCV    +   
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQRR----VW-CGGSLIDNKWILTAAHCVHDAVS--- 52
Query: 168 EPYIVHVGS-IDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
              +V++GS +  E  +    +  ER I H  +     LND+AL ++      +D IQPI
Sbjct: 53  --VVVYLGSAVQYEGEA---VVNSERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPI 106
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP    L ++ FE     V+GWG +      +  L++    V+DN +C Q +      I
Sbjct: 107 RLPSGEELNNK-FENIWATVSGWGQS---NTDTVILQYTYNLVIDNDRCAQEYPP--GII 160
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSY--GKKCAEVGFPGVYTRVT 344
            E+ +C G               P +  L  K  +IGVVS+  G  C E G P  ++RVT
Sbjct: 161 VESTIC-GDTSDGKSPCFGDSGGPFV--LSDKNLLIGVVSFVSGAGC-ESGKPVGFSRVT 216
Query: 345 NYIQWIADN 353
           +Y+ WI  N
Sbjct: 217 SYMDWIQQN 225

>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight Into Structural Radiation Damage Length = 223

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 96/218 (44%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CA  L             P++     
Sbjct: 131 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAYGLEGKGDSCQGDSGGPVVCSGKL 187
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  C     PGVYT+V NY+ WI   I+
Sbjct: 188 Q----GIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum Salmon Length = 222

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 20/216 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGVSIEIERPIIHEQY 199
            CGG+L+ + +V++AAHC             V +G  +++ T  S   I   R I H  Y
Sbjct: 24  FCGGSLVNENWVVSAAHCYKTRVE-------VRLGEHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 200 TSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLS 259
           +S    NDI L +L + A L+  +QP+ LP        +       V+GWG+T+      
Sbjct: 77  SSYNIDNDIMLIKLSKPATLNTYVQPVALPSSCAPAGTMCT-----VSGWGNTMSSTADK 131
Query: 260 PKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKY 319
            KL+ + I ++    C     +Y   I   + CAG L             P++   + + 
Sbjct: 132 NKLQCLNIPILSYSDCNN---SYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGELQ- 187
Query: 320 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              GVVS+G  CAE G PGVY +V  +  W+   ++
Sbjct: 188 ---GVVSWGYGCAEPGNPGVYAKVCIFNNWLTSTMA 220

>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum Salmon Length = 222

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 20/216 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGVSIEIERPIIHEQY 199
            CGG+L+ + +V++AAHC             V +G  +++ T  S   I   R I H  Y
Sbjct: 24  FCGGSLVNENWVVSAAHCYKSRVE-------VRLGEHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 200 TSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLS 259
           +S    NDI L +L + A L+  +QP+ LP        +       V+GWG+T+      
Sbjct: 77  SSYNIDNDIMLIKLSKPATLNTYVQPVALPSSCAPAGTMCT-----VSGWGNTMSSTADK 131
Query: 260 PKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKY 319
            KL+ + I ++    C     +Y   I   + CAG L             P++   + + 
Sbjct: 132 NKLQCLNIPILSYSDCNN---SYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGELQ- 187
Query: 320 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              GVVS+G  CAE G PGVY +V  +  W+   ++
Sbjct: 188 ---GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMA 220

>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor Complexed With Bovine Trypsin Length = 220

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 26/218 (11%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S Y   I  N+ CAG+                  P+  
Sbjct: 131 YPDVLKCLKAPILSDSSCK---SAYPGQITSNMFCAGLEGGDSCQGDSGG------PVVC 181
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
              + G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 182 SGKLQGIVSWGSGCAK-NKPGVYTKVCNYVSWIKQTIA 218

>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin Length = 222

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 104/245 (42%), Gaps = 30/245 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT + +G++P+M  +                CGGAL  +  VLTAAHCVS   +G  
Sbjct: 1   VVGGTRAAQGEFPFMVRLSMG-------------CGGALYAQDIVLTAAHCVSG--SGNN 45
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
                  G +DL+ +SS V +   + +    Y    K  D AL +         L QPI 
Sbjct: 46  TSITATGGVVDLQ-SSSAVKVRSTKVLQAPGYNGTGK--DWALIK---------LAQPIN 93
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
            P      +  + + T  VAGWG+    G     L    +  V +  CR  + N     N
Sbjct: 94  QPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNE-LVAN 152
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI-IGVVSYGKKCAEVGFPGVYTRVTNY 346
           E I CAG               P+    +   +I +G+VS+G+ CA  G  GVYT V+ +
Sbjct: 153 EEI-CAGYDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGEGCARKGKYGVYTEVSTF 211
Query: 347 IQWIA 351
              IA
Sbjct: 212 ASAIA 216

>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone Length = 226

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 26/244 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GGT  +    P+MA +        +NG P   CGG LI + +VLTAAHC     T   
Sbjct: 1   IIGGTECKPHSRPYMAYLEIVT----SNG-PSKFCGGFLIRRNFVLTAAHCAGRSIT--- 52
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++ E+  +   +E+ +   H +Y ++   +DI L +L+E A L+  +  +
Sbjct: 53  ----VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTL 108
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
             P   N    +   +   VAGWG T    P S  L+ V++ ++D   C   F ++   +
Sbjct: 109 PFPSQKNF---VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSH-FRDFDHNL 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
               LC G               PL+     +    G+VSYG+  A+   P V+TR+++Y
Sbjct: 165 Q---LCVGNPRKTKSAFKGDSGGPLLCAGAAQ----GIVSYGRSDAKP--PAVFTRISHY 215
Query: 347 IQWI 350
             WI
Sbjct: 216 QPWI 219

>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity Length = 228

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 111/245 (45%), Gaps = 24/245 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +E    P+MA++         NG    +CGG L+ +++VL+AAHC+     G+ 
Sbjct: 1   ILGGREAEAHARPYMASVQL-------NGAH--LCGGVLVAEQWVLSAAHCLEDAADGKV 51
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           +   V +G+  L        + ++ R + H  Y      +D+ L +L E A L   ++P 
Sbjct: 52  Q---VLLGAHSLSQPEPSKRLYDVLRAVPHPDYQPDTIDHDLLLLQLSEKATLGPAVRP- 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP+    R ++       VAGWG     G     L+HV + V+D   C +   + GA I
Sbjct: 108 -LPWQRVDR-DVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA-I 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTN 345
            E ++CA                    PL     + GVVS+G + C     PG+YTRV +
Sbjct: 165 TERLMCA------ESNRRDSCKGDSGGPLVCGGVLEGVVSWGSRVCGNRKKPGIYTRVAS 218
Query: 346 YIQWI 350
           Y  WI
Sbjct: 219 YAAWI 223

>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K Length = 240

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 117/252 (46%), Gaps = 23/252 (9%)
Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE 166
            I+GG        P+MA+I +             +CGG LI  ++VLTAAHC    T G+
Sbjct: 2   EIIGGKEVSPHSRPFMASIQYGGHH---------VCGGVLIDPQWVLTAAHCQYRFTKGQ 52
Query: 167 YEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               ++   S+  ++ +S  ++EI++ I   + TS  + NDI L +L+  A L+  ++ +
Sbjct: 53  SPTVVLGAHSLS-KNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKML 111
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK--LRHVQISVVDNPKCR-QIFSNYG 283
            +   T+LRS    +    V GWG+T     L P   LR V ++V+    C  Q + N  
Sbjct: 112 HIRSKTSLRSGTKCK----VTGWGAT-DPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGD 166
Query: 284 ATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV 343
             I ++++CAG               PL+     K     +VS G +C     PG+YT +
Sbjct: 167 PFITKDMVCAGDAKGQKDSCKGDAGGPLI----CKGVFHAIVSGGHECGVATKPGIYTLL 222
Query: 344 T-NYIQWIADNI 354
           T  Y  WI  N+
Sbjct: 223 TKKYQTWIKSNL 234

>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A Cold-Adapted Fish Species. Length = 223

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 28/238 (11%)
Query: 126 GFKIRRRRANGKPEW-----MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDL 179
           G++ R+  A+ +         CGG+LI+  +V++AAHC        Y+  I V +G  ++
Sbjct: 4   GYECRKNSASYQASLQSGYHFCGGSLISSTWVVSAAHC--------YKSRIQVRLGEHNI 55
Query: 180 E-DTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSEL 238
             +  +   I+  + I+H  Y S    NDI L +L + A L+  +  + LP      S  
Sbjct: 56  AVNEGTEQFIDSVKVIMHPSYNSRNLDNDIMLIKLSKPASLNSYVSTVALP-----SSCA 110
Query: 239 FERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLX 297
                  V+GWG+        P  LR + + ++ +  C    S Y   I  N+ CAG + 
Sbjct: 111 SSGTRCLVSGWGNLSGSSSNYPDTLRCLDLPILSSSSCN---SAYPGQITSNMFCAGFME 167
Query: 298 XXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
                       P++        + GVVS+G  CA+   PGVYT+V NY  WI+  +S
Sbjct: 168 GGKDSCQGDSGGPVV----CNGQLQGVVSWGYGCAQRNKPGVYTKVCNYRSWISSTMS 221

>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small Molecule Inhibitor Length = 226

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 26/244 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GGT  +    P+MA +        +NG P   CGG LI + +VLTAAHC     T   
Sbjct: 1   IIGGTECKPHSRPYMAYLEIVT----SNG-PSKFCGGFLIRRNFVLTAAHCAGRSIT--- 52
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++ E+  +   +E+ +   H +Y ++   +DI L +L+E A L+  +  +
Sbjct: 53  ----VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTL 108
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
             P   N    +   +   VAGWG T    P S  L+ V++ ++D   C   F ++   +
Sbjct: 109 PFPSQFNF---VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSH-FRDFDHNL 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
               LC G               PL+     +    G+VSYG+  A+   P V+TR+++Y
Sbjct: 165 Q---LCVGNPRKTKSAFKGDSGGPLLCAGAAQ----GIVSYGRSDAKP--PAVFTRISHY 215
Query: 347 IQWI 350
             WI
Sbjct: 216 QPWI 219

>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor Protease Active Site Selectivity Length = 224

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 106/245 (43%), Gaps = 28/245 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT + +G++P+M  +                CGGAL  +  VLTAAHCVS   +G  
Sbjct: 1   VVGGTRAAQGEFPFMVRLSMG-------------CGGALYAQDIVLTAAHCVSG--SGNN 45
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
                  G +DL+ +SS V +   + +    +T      D AL +         L QPI 
Sbjct: 46  TSITATGGVVDLQ-SSSAVKVRSTKVLQAPGFTKETYGKDWALIK---------LAQPIN 95
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
            P      +  + + T  VAGWG+    G     L    +  V +  CR   S++    N
Sbjct: 96  QPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRS-SSSFILVAN 154
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI-IGVVSYGKKCAEVGFPGVYTRVTNY 346
           E ++CAG               P+    +   ++ +G+VS+G+ CA  G  GVYT V+ +
Sbjct: 155 E-MICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTF 213
Query: 347 IQWIA 351
              IA
Sbjct: 214 ASAIA 218

>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex Length = 226

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 26/244 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GGT  +    P+MA +        +NG P   CGG LI + +VLTAAHC     T   
Sbjct: 1   IIGGTECKPHSRPYMAYLEIVT----SNG-PSKFCGGFLIRRNFVLTAAHCAGRSIT--- 52
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++ E+  +   +E+ +   H +Y ++   +DI L +L+E A L+  +  +
Sbjct: 53  ----VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTL 108
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
             P   N    +   +   VAGWG T    P S  L+ V++ ++D   C   F ++   +
Sbjct: 109 PFPSQFNF---VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSH-FRDFDHNL 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
               LC G               PL+     +    G+VSYG+  A+   P V+TR+++Y
Sbjct: 165 Q---LCVGNPRKTKSAFKGDSGGPLLCAGVAQ----GIVSYGRSDAKP--PAVFTRISHY 215
Query: 347 IQWI 350
             WI
Sbjct: 216 RPWI 219

>pdb|1NN6|A Chain A, Human Pro-Chymase Length = 228

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 26/244 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GGT  +    P+MA +        +NG P   CGG LI + +VLTAAHC     T   
Sbjct: 3   IIGGTECKPHSRPYMAYLEIVT----SNG-PSKFCGGFLIRRNFVLTAAHCAGRSIT--- 54
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++ E+  +   +E+ +   H +Y ++   +DI L +L+E A L+  +  +
Sbjct: 55  ----VTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTL 110
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
             P   N    +   +   VAGWG T    P S  L+ V++ ++D   C   F ++   +
Sbjct: 111 PFPSQFNF---VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSH-FRDFDHNL 166
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
               LC G               PL+     +    G+VSYG+  A+   P V+TR+++Y
Sbjct: 167 Q---LCVGNPRKTKSAFKGDSGGPLLCAGVAQ----GIVSYGRSDAKP--PAVFTRISHY 217
Query: 347 IQWI 350
             WI
Sbjct: 218 RPWI 221

>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai) Bt.D1 Length = 223

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S   A I  N+ CAG L             P++     
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASS---AIITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKL 187
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H Length = 226

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 26/248 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  ++    P+MA + F   + R        CGG L+ K +VLTAAHC         
Sbjct: 1   IIGGHEAKPHSRPYMAFVQFLQEKSRKR------CGGILVRKDFVLTAAHCQGSSIN--- 51
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++ E   +   I ++RPI H  Y      NDI L +L   A  +  ++P+
Sbjct: 52  ----VTLGAHNIKEQERTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAVRPL 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP     ++++   +   VAGWG  V    L+  L+ V ++V  + +C ++F  +G   
Sbjct: 108 RLPSS---KAQVKPGQLCSVAGWG-YVSMSTLATTLQEVLLTVQKDCQCERLF--HGNYS 161
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
               +C G               PL+     K    G++SYG K      PGVY +V+++
Sbjct: 162 RATEICVGDPKKTQTGFKGDSGGPLV----CKDVAQGILSYGNKKGTP--PGVYIKVSHF 215
Query: 347 IQWIADNI 354
           + WI   +
Sbjct: 216 LPWIKRTM 223

>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Ssyi)bt.B4 Length = 223

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 96/217 (44%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S+Y   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSY--IITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 237

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 114/262 (43%), Gaps = 42/262 (16%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   E+   PW  A+      R      +++CGG L+   +VLTAAHC         
Sbjct: 1   IVGGFKCEKNSQPWHVAV-----YRYT----QYLCGGVLLDPNWVLTAAHCYD------- 44
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSA--RK---------LNDIALFRLRE 215
           + Y V +G  +L +D  S     + + I H  +  +  RK          ND+ L RL +
Sbjct: 45  DNYKVWLGKNNLFKDEPSAQHRFVSKAIPHPGFNMSLMRKHIRFLEYDYSNDLMLLRLSK 104
Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS-TVFRGPLSPKLRHVQISVVDNPK 274
            A ++D ++PI LP +     E     T   +GWGS T  +   +  L  V + ++ N  
Sbjct: 105 PADITDTVKPITLPTE-----EPKLGSTCLASGWGSITPTKFQFTDDLYCVNLKLLPNED 159
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAE 333
           C +    +   + + +LCAG +             PL+        + G+ S+G   C E
Sbjct: 160 CAKA---HIEKVTDAMLCAGEMDGGKDTCKGDSGGPLI----CDGVLQGITSWGHTPCGE 212
Query: 334 VGFPGVYTRVTNYIQWIADNIS 355
              PGVYT++  +  WI D ++
Sbjct: 213 PDMPGVYTKLNKFTSWIKDTMA 234

>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Variant X(Triple.Glu)bt.D2 Length = 223

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDACQGDSGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G+ CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tga) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDACQGDAGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G+ CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B Length = 227

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 110/248 (44%), Gaps = 25/248 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  ++    P+MA +         + K    CGG LI   +VLTAAHC         
Sbjct: 1   IIGGHEAKPHSRPYMAYLMI------WDQKSLKRCGGFLIQDDFVLTAAHCWGSSIN--- 51
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++ E   +   I ++RPI H  Y      NDI L +L   A  +  +QP+
Sbjct: 52  ----VTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPL 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP +   ++++   +T  VAGWG T   G  S  L+ V+++V ++ KC     +Y  + 
Sbjct: 108 RLPSN---KAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDST 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            E  LC G               PL+          G+VSYG+       P   T+V+++
Sbjct: 165 IE--LCVGDPEIKKTSFKGDSGGPLV----CNKVAQGIVSYGRNNGMP--PRACTKVSSF 216
Query: 347 IQWIADNI 354
           + WI   +
Sbjct: 217 VHWIKKTM 224

>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala ( Ta) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDACQGDAGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin Variant X(99175190)BT Length = 223

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDACQGDSGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho Length = 227

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 110/248 (44%), Gaps = 25/248 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  ++    P+MA +         + K    CGG LI   +VLTAAHC         
Sbjct: 1   IIGGHEAKPHSRPYMAYLMI------WDQKSLKRCGGFLIRDDFVLTAAHCWGSSIN--- 51
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++ E   +   I ++RPI H  Y      NDI L +L   A  +  +QP+
Sbjct: 52  ----VTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPL 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP +   ++++   +T  VAGWG T   G  S  L+ V+++V ++ KC     +Y  + 
Sbjct: 108 RLPSN---KAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDST 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            E  LC G               PL+          G+VSYG+       P   T+V+++
Sbjct: 165 IE--LCVGDPEIKKTSFKGDSGGPLV----CNKVAQGIVSYGRNNGMP--PRACTKVSSF 216
Query: 347 IQWIADNI 354
           + WI   +
Sbjct: 217 VHWIKKTM 224

>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssfi.Glu)bt.D1 Length = 223

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 97/217 (44%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G+ CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDACQGDSGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G+ CA+   PG+YT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGEGCAQKNKPGIYTKVCNYVSWIKQTIA 221

>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant Profactor D Length = 235

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 110/246 (44%), Gaps = 24/246 (9%)
Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE 166
           RI+GG  +E    P+MA++         NG    +CGG L+ +++VL+AAHC+     G+
Sbjct: 7   RILGGREAEAHARPYMASVQL-------NGA--HLCGGVLVAEQWVLSAAHCLEDAADGK 57
Query: 167 YEPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
            +   V +G+  L        + ++ R + H         +D+ L +L E A L   ++P
Sbjct: 58  VQ---VLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP 114
Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
             LP+    R ++       VAGWG     G     L+HV + V+D   C +   + GA 
Sbjct: 115 --LPWQRVDR-DVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA- 170
Query: 286 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVT 344
           I E ++CA                    PL     + GVV+ G + C     PG+YTRV 
Sbjct: 171 ITERLMCA------ESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVA 224
Query: 345 NYIQWI 350
           +Y  WI
Sbjct: 225 SYAAWI 230

>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Sswi)bt.B4 Length = 223

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSW--IITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor Length = 226

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 112/248 (45%), Gaps = 26/248 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  ++    P+MA + F   + R        CGG L+ K +VLTAAHC         
Sbjct: 1   IIGGHEAKPHSRPYMAFVQFLQEKSRKR------CGGILVRKDFVLTAAHCQGSSIN--- 51
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++ E   +   I ++RPI H  Y      N+I L +L   A  +  ++P+
Sbjct: 52  ----VTLGAHNIKEQERTQQFIPVKRPIPHPAYNPKNFSNNIMLLQLERKAKWTTAVRPL 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP     ++++   +   VAGWG  V    L+  L+ V ++V  + +C ++F  +G   
Sbjct: 108 RLPSS---KAQVKPGQLCSVAGWG-YVSMSTLATTLQEVLLTVQKDCQCERLF--HGNYS 161
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
               +C G               PL+     K    G++SYG K      PGVY +V+++
Sbjct: 162 RATEICVGDPKKTQTGFKGDSGGPLV----CKDVAQGILSYGNKKGTP--PGVYIKVSHF 215
Query: 347 IQWIADNI 354
           + WI   +
Sbjct: 216 LPWIKRTM 223

>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri) Bt.C1 Length = 223

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 23/218 (10%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSNTLNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
            P  L+ ++  ++ +  C+   S     I  N+ CAG L             P++     
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSR---IITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKL 187
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +    G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 188 Q----GIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIA 221

>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 224

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 106/249 (42%), Gaps = 29/249 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   E    P+  ++                CGG+LI++++V++AAHC         
Sbjct: 1   IVGGYTCEENSLPYQVSLNSGYH----------FCGGSLISEQWVVSAAHCYKTRIQVRL 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
             + + V    LE       I   + I H +Y      NDI L +L   A ++  +  I 
Sbjct: 51  GEHNIKV----LEGNEQ--FINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTIS 104
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQIFSNYGATI 286
           LP      +         ++GWG+T+  G   P +L+ +   V+   +C+   ++Y   I
Sbjct: 105 LP-----TAPPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECK---ASYPGKI 156
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
             ++ C G L             P++        + GVVS+G  CA    PGVYT+V NY
Sbjct: 157 TNSMFCVGFLEGGKDSCQRDAGGPVV----CNGQLQGVVSWGHGCAWKNRPGVYTKVYNY 212
Query: 347 IQWIADNIS 355
           + WI D I+
Sbjct: 213 VDWIKDTIA 221

>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By Targeting The Exosite On Factor D Length = 228

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 112/245 (45%), Gaps = 24/245 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +E    P+MA++       + NG  E +CGG L+ +++VL+AAHC+     G+ 
Sbjct: 1   ILGGREAEAHARPYMASV-------QVNG--EHLCGGVLVAEQWVLSAAHCLEDAADGKV 51
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           +   V +G+  L        + ++ R + H         +D+ L +L E A L   ++P 
Sbjct: 52  Q---VLLGAHSLSQPEPSKRLYDVLRAVPHPDSRPDTIDHDLLLLQLSEKATLGPAVRP- 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP+    R ++       VAGWG     G    +L+HV + V+D   C +   + GA I
Sbjct: 108 -LPWQRVDR-DVEPGTLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDGA-I 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTN 345
            + ++CA                    PL     + GVV+ G + C     PG+YTRV +
Sbjct: 165 TQRMMCA------ESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVAS 218
Query: 346 YIQWI 350
           Y  WI
Sbjct: 219 YAAWI 223

>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 96/217 (44%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDACQGDSGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA+   PG+YT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTIA 221

>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen Complexed With An Activating Antibody Length = 237

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 114/261 (43%), Gaps = 42/261 (16%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   E+   PW   +     R RA      +CGG L+  ++VLTAAHC+   +    
Sbjct: 1   IVGGWECEKHSQPWQVLVA---SRGRA------VCGGVLVHPQWVLTAAHCIRNKS---- 47
Query: 168 EPYIVHVGSIDL---EDTSS--GVSIEIERPIIHEQYTSARKL-------NDIALFRLRE 215
              ++ +G   L   EDT     VS     P+        R L       +D+ L RL E
Sbjct: 48  ---VILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSE 104
Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPK 274
            A L+D ++ + LP       E     T + +GWGS      L+P KL+ V + V+ N  
Sbjct: 105 PAELTDAVKVMDLP-----TQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDV 159
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAE 333
           C Q+   +   + + +LCAG               PL+        + G+ S+G + CA 
Sbjct: 160 CAQV---HPQKVTKFMLCAGRWTGGKSTCSGDSGGPLV----CNGVLQGITSWGSEPCAL 212
Query: 334 VGFPGVYTRVTNYIQWIADNI 354
              P +YT+V +Y +WI D I
Sbjct: 213 PERPSLYTKVVHYRKWIKDTI 233

>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin Inhibitor(Bpti) Length = 224

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 106/249 (42%), Gaps = 29/249 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   E    P+  ++                CGG+LI++++V++AAHC         
Sbjct: 1   IVGGYTCEENSLPYQVSLN----------SGSHFCGGSLISEQWVVSAAHCYKTRIQVRL 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
             + + V    LE       I   + I H +Y      NDI L +L   A ++  +  I 
Sbjct: 51  GEHNIKV----LEGNEQ--FINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTIS 104
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQIFSNYGATI 286
           LP      +         ++GWG+T+  G   P +L+ +   V+   +C+   ++Y   I
Sbjct: 105 LP-----TAPPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECK---ASYPGKI 156
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
             ++ C G L             P++        + GVVS+G  CA    PGVYT+V NY
Sbjct: 157 TNSMFCVGFLEGGKDSCQRDAGGPVV----CNGQLQGVVSWGHGCAWKNRPGVYTKVYNY 212
Query: 347 IQWIADNIS 355
           + WI D I+
Sbjct: 213 VDWIKDTIA 221

>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r Reveals Enzyme-product Like Contacts Length = 242

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 108/260 (41%), Gaps = 43/260 (16%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  ++ G +PW        R            GGAL+  R++LTAAH + P    E+
Sbjct: 1   IIGGQKAKMGNFPWQVFTNIHGR-----------GGGALLGDRWILTAAHTLYPK---EH 46
Query: 168 EP-----YIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLN---DIALFRLREDAPL 219
           E        V +G  ++E+     +  I R  +H  Y      N   DIAL  L     L
Sbjct: 47  EAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTL 106
Query: 220 SDLIQPICLP-----YDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPK 274
              + PICLP     YD  L          +V+G+G  V    ++  LR V++ V +   
Sbjct: 107 GPNLLPICLPDNDTFYDLGLMG--------YVSGFG--VMEEKIAHDLRFVRLPVANPQA 156
Query: 275 CRQIF--SNYGATINENILCAG--VLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK 330
           C       N     ++N+ CAG   L              +  P   ++   G+VS+G  
Sbjct: 157 CENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG 216
Query: 331 CAEVGFPGVYTRVTNYIQWI 350
           C+  G+ G YT+V NY+ WI
Sbjct: 217 CSR-GY-GFYTKVLNYVDWI 234

>pdb|3FZZ|A Chain A, Structure Of Grc Length = 227

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 22/247 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG        P+MA   F     +  GK +  CGG L+  ++VLTAAHC      G  
Sbjct: 1   IIGGNEISPHSRPYMAYYEF----LKVGGK-KMFCGGFLVRDKFVLTAAHC-----KGRS 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
               +   +I  ++ +  + I + + I H  Y    + NDI L +L  +A  +  ++P+ 
Sbjct: 51  MTVTLGAHNIKAKEETQQI-IPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLN 109
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP      + +      +VAGWG     G     L  V+++V  +  C   F +     N
Sbjct: 110 LP---RRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRAN 166
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
           E  +C G               PL+     K    G+VSYG+   +   P V+TRV +++
Sbjct: 167 E--ICVGDSKIKGASFEEDSGGPLV----CKRAAAGIVSYGQ--TDGSAPQVFTRVLSFV 218
Query: 348 QWIADNI 354
            WI   +
Sbjct: 219 SWIKKTM 225

>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 96/217 (44%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+L+  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLLNSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDACQGDSGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA+   PG+YT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTIA 221

>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tgpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 96/217 (44%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDACQGDAGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G+ CA+   PG YT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G Length = 227

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 22/247 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG        P+MA   F     +  GK +  CGG L+  ++VLTAAHC      G  
Sbjct: 1   IIGGNEISPHSRPYMAYYEF----LKVGGK-KMFCGGFLVRDKFVLTAAHC-----KGRS 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
               +   +I  ++ +  + I + + I H  Y    + NDI L +L  +A  +  ++P+ 
Sbjct: 51  MTVTLGAHNIKAKEETQQI-IPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLN 109
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP      + +      +VAGWG     G     L  V+++V  +  C   F +     N
Sbjct: 110 LP---RRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRAN 166
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
           E  +C G               PL+     K    G+VSYG+   +   P V+TRV +++
Sbjct: 167 E--ICVGDSKIKGASFRGDSGGPLV----CKRAAAGIVSYGQ--TDGSAPQVFTRVLSFV 218
Query: 348 QWIADNI 354
            WI   +
Sbjct: 219 SWIKKTM 225

>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin) Length = 224

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 106/249 (42%), Gaps = 29/249 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   E    P+  ++                CGG+LI++++V++AAHC         
Sbjct: 1   IVGGYTCEENSLPYQVSLN----------SGSHFCGGSLISEQWVVSAAHCYKTRIQVRL 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
             + + V    LE       I   + I H +Y      NDI L +L   A ++  +  I 
Sbjct: 51  GEHNIKV----LEGNEQ--FINAVKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTIS 104
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQIFSNYGATI 286
           LP      +         ++GWG+T+  G   P +L+ +   V+   +C+   ++Y   I
Sbjct: 105 LP-----TAPPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECK---ASYPGKI 156
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
             ++ C G L             P++        + GVVS+G  CA    PGVYT+V NY
Sbjct: 157 TNSMFCVGFLEGGKDSCQRDSGGPVV----CNGQLQGVVSWGHGCAWKNRPGVYTKVYNY 212
Query: 347 IQWIADNIS 355
           + WI D I+
Sbjct: 213 VDWIKDTIA 221

>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDACQGDAGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA+   PG YT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA+   PG YT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDACQGDSGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA+   PG YT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a Length = 228

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 24/245 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +E    P+MA++         NG    +CGG L+ +++VL+AAHC+     G+ 
Sbjct: 1   ILGGREAEAHARPYMASVQL-------NGA--HLCGGVLVAEQWVLSAAHCLEDAADGKV 51
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           +   V +G+  L        + ++ R + H         +D+ L +L E A L   ++P 
Sbjct: 52  Q---VLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP- 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP+    R ++       VAGWG     G     L+HV + V+D   C +   + GA I
Sbjct: 108 -LPWQRVDR-DVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA-I 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTN 345
            E ++CA                    PL     + GVV+ G + C     PG+YTRV +
Sbjct: 165 TERLMCA------ESNRRDSCKGDAGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVAS 218
Query: 346 YIQWI 350
           Y  WI
Sbjct: 219 YAAWI 223

>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor Length = 240

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +V G P+ R    WM ++ ++ +          +CGG+LI + +VLTA  C       +Y
Sbjct: 1   VVNGIPT-RTNIGWMVSLRYRNKH---------ICGGSLIKESWVLTARQCFPSRDLKDY 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
           E ++       + D       + ++ +   Q     + +D+ L +L   A L D +  I 
Sbjct: 51  EAWL------GIHDVHGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTID 104
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP   N  S + E+ +  V GWG T         LR   + ++ N KC Q       T+N
Sbjct: 105 LP---NYGSTIPEKTSCSVYGWGYTGLIN-YDGLLRVAHLYIMGNEKCSQHHRGK-VTLN 159
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
           E+ +CAG               PL+        ++GV+  G+ CA    PG++ RV  Y 
Sbjct: 160 ESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYA 219
Query: 348 QWI 350
           +WI
Sbjct: 220 KWI 222

>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With The Sema Domain Of The Met Receptor Length = 234

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 21/243 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +V G P+ R    WM ++ ++ +          +CGG+LI + +VLTA  C       +Y
Sbjct: 1   VVNGIPT-RTNIGWMVSLRYRNKH---------ICGGSLIKESWVLTARQCFPSRDLKDY 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
           E ++       + D       + ++ +   Q     + +D+ L +L   A L D +  I 
Sbjct: 51  EAWL------GIHDVHGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTID 104
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP   N  S + E+ +  V GWG T         LR   + ++ N KC Q       T+N
Sbjct: 105 LP---NYGSTIPEKTSCSVYGWGYTGLIN-YDGLLRVAHLYIMGNEKCSQHHRGK-VTLN 159
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
           E+ +CAG               PL+        ++GV+  G+ CA    PG++ RV  Y 
Sbjct: 160 ESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYA 219
Query: 348 QWI 350
           +WI
Sbjct: 220 KWI 222

>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme Length = 228

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 24/245 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +E    P+MA++         NG    +CGG L+ +++VL+AAHC+     G+ 
Sbjct: 1   ILGGREAEAHARPYMASVQL-------NGA--HLCGGVLVAEQWVLSAAHCLEDAADGKV 51
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           +   V +G+  L        + ++ R + H         +D+ L +L E A L   ++P 
Sbjct: 52  Q---VLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP- 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP+    R ++       VAGWG     G     L+HV + V+D   C +   + GA I
Sbjct: 108 -LPWQRVDR-DVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA-I 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTN 345
            E ++CA                    PL     + GVV+ G + C     PG+YTRV +
Sbjct: 165 TERLMCA------ESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVAS 218
Query: 346 YIQWI 350
           Y  WI
Sbjct: 219 YAAWI 223

>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex Length = 347

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 117/280 (41%), Gaps = 53/280 (18%)
Query: 100 NAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV 159
           N  +  +RI+GG+   +G +PW A +   I             G  LI ++++LT A  +
Sbjct: 95  NPVDQVQRIMGGSLDAKGSFPWQAKM---ISHHNLTS------GATLINEQWLLTTAKNL 145
Query: 160 ----SPDTTG-EYEPYI-VHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRL 213
                 DT   +  P + ++VG            +EIE+ I H   ++     DI L +L
Sbjct: 146 RLGHKNDTKAKDIAPTLRLYVGKKQ--------EVEIEKVIFHPDNSTV----DIGLIKL 193
Query: 214 REDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNP 273
           ++  P+++ + PICLP    +   L      +V+GWG        +  L++V + V D  
Sbjct: 194 KQKVPVNERVMPICLPSKDYVNVGLV----GYVSGWGRNANLN-FTEHLKYVMLPVADQE 248
Query: 274 KCRQIFSNYGATI----------------NENILCAGVLXXXXXXXXXXXXXPLMY--PL 315
           KC Q +   G+T+                NE+  CAG+                      
Sbjct: 249 KCVQYYE--GSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKD 306
Query: 316 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           D  +Y  G++S+ K C    + GVY RVT+ + WI   I+
Sbjct: 307 DDTWYAAGILSFDKSCRTAEY-GVYVRVTSILDWIQTTIA 345

>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin Length = 226

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 110/248 (44%), Gaps = 35/248 (14%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +    WP  AA+              + CGG+LI+  ++LTAAHC+  D  G  
Sbjct: 1   IVGGVEAVPNSWPHQAALFID---------DMYFCGGSLISPEWILTAAHCM--DGAGFV 49
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           +   V +G+ ++ ED ++ V+I+     +HE Y S    NDIA+ RL     L+  I  +
Sbjct: 50  D---VVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATV 106
Query: 227 CLP-YDTNLRSELFERKTPFVAGWG--STVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG 283
            LP  D  + + +    TP   GWG  S    G +S  LR V + ++ N  C  +   YG
Sbjct: 107 GLPSTDVGVGTVV----TP--TGWGLPSDSALG-ISDVLRQVDVPIMSNADCDAV---YG 156
Query: 284 ATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCA-EVGFPGVYTR 342
              + NI                       PL+      G+ S+G     E G+P  +TR
Sbjct: 157 IVTDGNICIDSTGGKGTCNGDSGG------PLNYNGLTYGITSFGAAAGCEAGYPDAFTR 210
Query: 343 VTNYIQWI 350
           VT ++ WI
Sbjct: 211 VTYFLDWI 218

>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component A From Eisenia Fetida Length = 241

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 108/254 (42%), Gaps = 22/254 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           ++GGT +  G++PW      ++ ++R +G     CG +L++    L+A+HCV     G  
Sbjct: 1   VIGGTNASPGEFPW------QLSQQRQSGSWSHSCGASLLSSTSALSASHCVD----GVL 50
Query: 168 EPYI-VHVGSIDLEDTSSGVSIEIERPIIHEQYTS--ARKLNDIALFRLREDAPLSDLIQ 224
              I V  G     DTS   +  ++   +HE Y +  A   NDIA+  L     L   IQ
Sbjct: 51  PNNIRVIAGLWQQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQ 110
Query: 225 PICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG- 283
              LP + N     +   T  ++GWG T     L   L+   I V+   +C       G 
Sbjct: 111 AAVLPANNN---NDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGG 167
Query: 284 ATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSY----GKKCAEVGFPGV 339
           A I +N +C                 PL  P D    ++GV S+    G       +P V
Sbjct: 168 ANIWDNHICVQDPAGNTGACNGDSGGPLNCP-DGGTRVVGVTSWVVSSGLGACLPDYPSV 226
Query: 340 YTRVTNYIQWIADN 353
           YTRV+ Y+ WI DN
Sbjct: 227 YTRVSAYLGWIGDN 240

>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 233

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 106/255 (41%), Gaps = 31/255 (12%)
Query: 103 NSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPD 162
           +   +IVGG   +    P+  ++                CGG+LI  ++V++AAHC    
Sbjct: 6   DDDDKIVGGYTCQENSVPYQVSLNSGYH----------FCGGSLINDQWVVSAAHCYKSR 55
Query: 163 TTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
                  + ++V    LE     V+    + I H  +      NDI L +L     L+  
Sbjct: 56  IQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFDRKTLNNDIMLIKLSSPVKLNAR 109
Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQI--FS 280
           +  + LP      S         ++GWG+T+  G   P L    +  +D P   Q    +
Sbjct: 110 VATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEPDL----LQCLDAPLLPQADCEA 160
Query: 281 NYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVY 340
           +Y   I +N++C G L             P++   + +    G+VS+G  CA    PGVY
Sbjct: 161 SYPGKITDNMVCVGFLEGGKDSCQGDAGGPVVCNGELQ----GIVSWGYGCALPDNPGVY 216
Query: 341 TRVTNYIQWIADNIS 355
           T+V NY+ WI D I+
Sbjct: 217 TKVCNYVDWIQDTIA 231

>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ CAG L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCAGYLEGGKDACQGDSGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA+   PG YT++ NY+ WI   I+
Sbjct: 189 ----GIVSWGSGCAQKNKPGFYTKLCNYVSWIKQTIA 221

>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 245

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 106/255 (41%), Gaps = 31/255 (12%)
Query: 103 NSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPD 162
           +   +IVGG   +    P+  ++                CGG+LI  ++V++AAHC    
Sbjct: 18  DDDDKIVGGYTCQENSVPYQVSLNSGYH----------FCGGSLINDQWVVSAAHCYKSR 67
Query: 163 TTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
                  + ++V    LE     V+    + I H  +      NDI L +L     L+  
Sbjct: 68  IQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFDRKTLNNDIMLIKLSSPVKLNAH 121
Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQI--FS 280
           +  + LP      S         ++GWG+T+  G   P L    +  +D P   Q    +
Sbjct: 122 VATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEPDL----LQCLDAPLLPQADCEA 172
Query: 281 NYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVY 340
           +Y   I +N++C G L             P++   + +    G+VS+G  CA    PGVY
Sbjct: 173 SYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ----GIVSWGYGCALPDNPGVY 228
Query: 341 TRVTNYIQWIADNIS 355
           T+V NY+ WI D I+
Sbjct: 229 TKVCNYVDWIQDTIA 243

>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With Benzamidine Length = 220

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 18/215 (8%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+L++K +V++AAHC           + + V     +  SS         I H  Y+
Sbjct: 24  FCGGSLVSKDWVVSAAHCYKSVLRVRLGEHHIRVNEGTEQYISS------SSVIRHPNYS 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
           S    NDI L +L + A L+  +  + LP +    + +       V+GWG+T+       
Sbjct: 78  SYNINNDIMLIKLTKPATLNQYVHAVALPTECAADATMCT-----VSGWGNTMSSVADGD 132
Query: 261 KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 320
           KL+ + + ++ +  C    ++Y   I +++ CAG L             P++        
Sbjct: 133 KLQCLSLPILSHADCA---NSYPGMITQSMFCAGYLEGGKDSCQGDSGGPVV----CNGV 185
Query: 321 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           + GVVS+G  CAE   PGVY +V     W+ D ++
Sbjct: 186 LQGVVSWGYGCAERDHPGVYAKVCVLSGWVRDTMA 220

>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L+  +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLNSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ C G L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCVGYLEGGKDACQGDSGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G+ CA+   PG YT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a Length = 228

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 24/245 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +E    P+MA++         NG    +CGG L+ +++VL+AAHC+     G+ 
Sbjct: 1   ILGGREAEAHARPYMASVQL-------NGA--HLCGGVLVAEQWVLSAAHCLEDAADGKV 51
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           +   V +G+  L        + ++ R + H         +D+ L +L E A L   ++P 
Sbjct: 52  Q---VLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRP- 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP+    R ++       VAGWG     G     L+HV + V+D   C +   + GA I
Sbjct: 108 -LPWQRVDR-DVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGA-I 164
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTN 345
            E ++CA                    PL     + GVV+ G   C     PG+YTRV +
Sbjct: 165 TERLMCA------ESNRRDSCKGDSGGPLVCGGVLEGVVTSGSAVCGNRKKPGIYTRVAS 218
Query: 346 YIQWI 350
           Y  WI
Sbjct: 219 YAAWI 223

>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With Ser (D189s) Length = 223

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 78  RKTLNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++   + +
Sbjct: 133 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKSSCQGDSGGPVVCNGELQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 189 ----GIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His Length = 223

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 78  HKTLNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++   + +
Sbjct: 133 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 189 ----GIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17 Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 231

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 32  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 85
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 86  RKTLNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 140
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++      
Sbjct: 141 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGNSGGPVV----CN 192
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
             + G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 193 GELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 229

>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVGSIDLEDTSSGVS-IEIERPIIHEQ 198
            CGG+LI  ++V++AAHC        Y+  I V +G  ++         I   + I+H  
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSGIQVRLGEDNINVVEGNEQFISASKSIVHPS 75
Query: 199 YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL 258
           Y S    NDI L +L+  A L   +  I LP      S         ++GWG+T   G  
Sbjct: 76  YNSETYNNDIMLIKLKSAASLXSRVASISLP-----TSCASAGTQCLISGWGNTKSSGTS 130
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            P +     + + +    +  S++   I  N+ C G L             P++     +
Sbjct: 131 YPDVLKCLKAPILSDSSCKSASSF--IITSNMFCVGYLEGGKDACQGDSGGPVVCSGKLQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G+ CA+   PG YT+V NY+ WI   I+
Sbjct: 189 ----GIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTIA 221

>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic Trypsinogen-Bpti Complex Length = 231

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 32  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 85
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 86  RKTLNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 140
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++      
Sbjct: 141 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVV----CN 192
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
             + G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 193 GELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 229

>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex Length = 223

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 78  RKTLNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++   + +
Sbjct: 133 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDAGGPVVCNGELQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 189 ----GIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 223

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 78  RKTLNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++   + +
Sbjct: 133 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 189 ----GIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 231

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 32  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 85
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 86  RKTLNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 140
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++      
Sbjct: 141 DL----LKCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVV----CN 192
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
             + G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 193 GELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 229

>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin Mutant X99rt Length = 223

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 78  RETYNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++   + +
Sbjct: 133 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 189 ----GIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 233

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 34  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 87
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 88  RKTLNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 142
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++   + +
Sbjct: 143 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ 198
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 199 ----GIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 231

>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Nickel- Bound Length = 223

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  I LP      S         ++GWG T+  G   P
Sbjct: 78  RKTLNNDIMLIKLSSPVKLNARVATIALP-----SSCAPAGTQCLISGWGHTLSSGVNHP 132
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++   + +
Sbjct: 133 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 189 ----GIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1DPO|A Chain A, Structure Of Rat Trypsin Length = 223

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 78  RKTLNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 261 KLRHVQISVVDNPKCRQ--IFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++   + +
Sbjct: 133 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDCGGPVVCNGELQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 189 ----GIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme) Length = 237

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 110/261 (42%), Gaps = 42/261 (16%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG   E+   PW  A+ ++          E +CGG L+ + +VLTAAHC         
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQ---------KEHICGGVLLDRNWVLTAAHCY-------V 44
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKL-----------NDIALFRLRE 215
           + Y V +G   L ++  S     + +   H  +  +  +           +D+ L RL +
Sbjct: 45  DQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSK 104
Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS-TVFRGPLSPKLRHVQISVVDNPK 274
            A ++D+++PI LP       E         +GWGS T  R      L+ V I+++ N  
Sbjct: 105 PADITDVVKPIALP-----TKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNEN 159
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK-KCAE 333
           C ++   Y   + + +LCAG +             PL+        + G  SYG   C +
Sbjct: 160 CAKV---YLQKVTDVMLCAGEMGGGKDTCRDDSGGPLI----CDGILQGTTSYGPVPCGK 212
Query: 334 VGFPGVYTRVTNYIQWIADNI 354
            G P +YT +  +  WI D +
Sbjct: 213 PGVPAIYTNLIKFNSWIKDTM 233

>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Zinc-Bound Length = 223

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG T+  G   P
Sbjct: 78  RKTLNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGHTLSSGVNHP 132
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++   + +
Sbjct: 133 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 189 ----GIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu Length = 223

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 78  RKTLNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++   + +
Sbjct: 133 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+V +G  CA    PGVYT+V NY+ WI D I+
Sbjct: 189 ----GIVEWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys Length = 223

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 78  RKTLNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++   + +
Sbjct: 133 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+V +G  CA    PGVYT+V NY+ WI D I+
Sbjct: 189 ----GIVKWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic System Of Mouse Brain Length = 225

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 35/241 (14%)
Query: 120 PWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL 179
           PW AA+ F+  R         +CGG L+  R+VLTAAHC       + + Y V +G   L
Sbjct: 13  PWQAAL-FQGERL--------ICGGVLVGDRWVLTAAHC-------KKQKYSVRLGDHSL 56
Query: 180 EDTSS-GVSIEIERPIIHEQYTSAR---KLNDIALFRLREDAPLSDLIQPICLPYDTNLR 235
           +        I++ + I H  Y ++      +DI L RL+  A L D ++P+ L    NL 
Sbjct: 57  QSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQL---ANLC 113
Query: 236 SELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATINENILCAG 294
            ++ ++    ++GWG+        P  L   ++ +    KC +    Y   I E ++CAG
Sbjct: 114 PKVGQK--CIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERA---YPGKITEGMVCAG 168
Query: 295 VLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADN 353
                              PL     + G+ S+G   C +   PGVYT++  Y  WI   
Sbjct: 169 SSNGADTCQGDSGG-----PLVCDGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKT 223
Query: 354 I 354
           +
Sbjct: 224 M 224

>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a, D70a Bound To Rat Anionic Trypsin Ii Length = 223

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V   D +       +   + I H  + 
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGDEQ------FVNAAKIIKHPNFD 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                N+I L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 78  RKTLNNNIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++   + +
Sbjct: 133 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 189 ----GIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of Trypsin. Role Of Asp102 In Serine Protease Catalysis Length = 223

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                N+I L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 78  RKTLNNNIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++   + +
Sbjct: 133 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 189 ----GIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The Molecular Determinants Of Substrate Specificity Length = 234

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 25/251 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG        P+M  +    +          +C GALI K +VLTAAHC       + 
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKT---------ICAGALIAKDWVLTAAHC----NLNKR 47
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              I+   SI  E+ +  + + +++   +  Y  A +  D+ L +L E A ++  +  + 
Sbjct: 48  SQVILGAHSITREEPTKQIML-VKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILH 106
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCR-QIFSNYGATI 286
           LP   +   ++       VAGWG T      S  LR V+I+++D   C  +   N+   I
Sbjct: 107 LPKKGD---DVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVI 163
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYG--KKCAEVGFPGVYTRVT 344
             N++CAG L             PL+     +    GV S+G   KC +   PGVY  ++
Sbjct: 164 GMNMVCAGSLRGGRDSCNGDSGSPLL----CEGVFRGVTSFGLENKCGDPRGPGVYILLS 219
Query: 345 -NYIQWIADNI 354
             ++ WI   I
Sbjct: 220 KKHLNWIIMTI 230

>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 240

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 105/233 (45%), Gaps = 37/233 (15%)
Query: 139 EWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSID-LEDTSSGVSIEIERPIIHE 197
           ++ CGG L+ + +VLTAAHC +       + Y V +G  + LED  S     + + I H 
Sbjct: 26  KYQCGGVLLDRNWVLTAAHCYN-------DKYQVWLGKNNFLEDEPSDQHRLVSKAIPHP 78
Query: 198 QYTSA-----------RKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFV 246
            +  +              ND+ L RL + A ++D+++PI LP +     E     T   
Sbjct: 79  DFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTE-----EPKLGSTCLA 133
Query: 247 AGWGSTV---FRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXX 303
           +GWGST    F+ P    L+ V + ++ N  C +    +   + + +LCAG +       
Sbjct: 134 SGWGSTTPIKFKYP--DDLQCVNLKLLPNEDCDKA---HEMKVTDAMLCAGEMDGGSYTC 188
Query: 304 XXXXXXPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS 355
                 PL+        + G+ S+G + C E   P VYT++  +  WI + ++
Sbjct: 189 EHDSGGPLI----CDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 237

>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A Length = 234

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 107/251 (42%), Gaps = 25/251 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG        P+M  +    +          +C GALI K +VLTAAHC       + 
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKT---------ICAGALIAKDWVLTAAHC----NLNKR 47
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              I+   SI  E+ +  + + +++   +  Y  A +  D+ L +L E A ++  +  + 
Sbjct: 48  SQVILGAHSITREEPTKQIML-VKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILH 106
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCR-QIFSNYGATI 286
           LP   +   ++       VAGWG T      S  LR V I+++D   C  +   N+   I
Sbjct: 107 LPKKGD---DVKPGTMCQVAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYNFNPVI 163
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYG--KKCAEVGFPGVYTRVT 344
             N++CAG L             PL+     +    GV S+G   KC +   PGVY  ++
Sbjct: 164 GMNMVCAGSLRGGRDSCNGDSGSPLL----CEGVFRGVTSFGLENKCGDPRGPGVYILLS 219
Query: 345 -NYIQWIADNI 354
             ++ WI   I
Sbjct: 220 KKHLNWIIMTI 230

>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT Length = 223

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 78  RETYNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 261 KLRHVQISVVDNPKCRQIFSNYGAT--INENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q      ++  I +N++C G L             P++   + +
Sbjct: 133 DL----LQCLDAPLLPQADCEASSSFIITDNMVCVGFLEGGKDACQGDSGGPVVCNGELQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA    PGVYT+V NY+ WI D I+
Sbjct: 189 ----GIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With The Protein Inhibitors Appi And Bpti Length = 223

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG+LI  ++V++AAHC           + ++V    LE     V+    + I H  + 
Sbjct: 24  FCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINV----LEGNEQFVNAA--KIIKHPNFD 77
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
                NDI L +L     L+  +  + LP      S         ++GWG+T+  G   P
Sbjct: 78  RKTLNNDIMLIKLSSPVKLNARVATVALP-----SSCAPAGTQCLISGWGNTLSSGVNEP 132
Query: 261 KLRHVQISVVDNPKCRQI--FSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
            L    +  +D P   Q    ++Y   I +N++C G L             P++   + +
Sbjct: 133 DL----LQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKGSCQGDSGGPVVCNGELQ 188
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VS+G  CA    P VYT+V NY+ WI D I+
Sbjct: 189 ----GIVSWGYGCALPDNPDVYTKVCNYVDWIQDTIA 221

>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With Vacant Active Site Length = 238

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 112/260 (43%), Gaps = 37/260 (14%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   E+   PW AA+ +     +        CGG L+ +++VLTAAHC+S +    Y
Sbjct: 1   IVGGWECEQHSQPWQAAL-YHFSTFQ--------CGGILVHRQWVLTAAHCISDN----Y 47
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPII---------HEQYTSARKLNDIALFRLREDA- 217
           + ++      D E+T+  V +    P           H +       +D+ L RL E A 
Sbjct: 48  QLWLGRHNLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPAD 107
Query: 218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCR 276
            ++D ++ + LP +     E     T   +GWGS        P  L+ V + ++ N +C+
Sbjct: 108 TITDAVKVVELPTE-----EPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECK 162
Query: 277 QIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK-KCAEVG 335
           +    +   + + +LC G L             PLM        + GV S+G   C    
Sbjct: 163 KA---HVQKVTDFMLCVGHLEGGKDTCVGDSGGPLM----CDGVLQGVTSWGYVPCGTPN 215
Query: 336 FPGVYTRVTNYIQWIADNIS 355
            P V  RV +Y++WI D I+
Sbjct: 216 KPSVAVRVLSYVKWIEDTIA 235

>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And P-aminobenzamidine Length = 223

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 103/250 (41%), Gaps = 32/250 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+ G        PW AA+  +          E  C G L+  ++VL+AAHC         
Sbjct: 1   IINGEDCSPHSQPWQAALVME---------NELFCSGVLVHPQWVLSAAHCFQ------- 44
Query: 168 EPYIVHVG--SIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
             Y + +G  S++ +       +E    + H +Y      ND+ L +L E    SD I+ 
Sbjct: 45  NSYTIGLGLHSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRS 104
Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
           I +              +  V+GWG  +  G +   L+ V +SVV    C ++   Y   
Sbjct: 105 ISIASQCPTAG-----NSCLVSGWG-LLANGRMPTVLQCVNVSVVSEEVCSKL---YDPL 155
Query: 286 INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVT 344
            + ++ CAG               PL+       Y+ G+VS+GK  C +VG PGVYT + 
Sbjct: 156 YHPSMFCAGGGQDQKDSCNGDSGGPLI----CNGYLQGLVSFGKAPCGQVGVPGVYTNLC 211
Query: 345 NYIQWIADNI 354
            + +WI   +
Sbjct: 212 KFTEWIEKTV 221

>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M Length = 240

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 109/245 (44%), Gaps = 23/245 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG        P+MA++       + NG    +CGG L+  ++VLTAAHC++       
Sbjct: 1   IIGGREVIPHSRPYMASL-------QRNG--SHLCGGVLVHPKWVLTAAHCLAQRMAQLR 51
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSDLIQPI 226
              ++ + ++D    S G++  I+  I H +Y     L ND+AL +L      S  I+P+
Sbjct: 52  --LVLGLHTLD----SPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPL 105
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP     R  +       +AGWG T   G LS  LR + + V+D   C      +  ++
Sbjct: 106 ALPSK---RQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNN-SRFWNGSL 161
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTN 345
           + +++C                 PL+        + GV+S+  + C ++  P V T V  
Sbjct: 162 SPSMVCLAADSKDQAPCKGDSGGPLV--CGKGRVLAGVLSFSSRVCTDIFKPPVATAVAP 219
Query: 346 YIQWI 350
           Y+ WI
Sbjct: 220 YVSWI 224

>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease Paralogue S-I1 (Smipp-S-I1) Length = 228

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 106/263 (40%), Gaps = 57/263 (21%)
Query: 110 GGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT-- 164
           GG  ++  Q PW  A+      R   G+    CGGA++++ +VLTAAHCV    P+T   
Sbjct: 2   GGEKTDIKQVPWTVAV------RTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIVI 55
Query: 165 -----------GEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRL 213
                      G+ +PY+ HV                        Y      NDIA+  L
Sbjct: 56  QYESTNLWEDPGKSDPYVSHV--------------------YLSFYRQETMENDIAILEL 95
Query: 214 REDAPLSDL-IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDN 272
                L  L  +P  LP D   R +        V+G+G      P    L+  Q++VVD 
Sbjct: 96  SRPLKLDGLKSKPAKLP-DIEFRPKT--GSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDL 152
Query: 273 PKCRQIFSNYGAT-INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKC 331
            +CR   + YG   ++  + CA  +                 P   +  ++GV +Y  K 
Sbjct: 153 DECR---TKYGPIFLSLQVFCAQKVGVSLESGDAGD------PTVQQDTLVGVAAYFPKR 203
Query: 332 AEVGFPGVYTRVTNYIQWIADNI 354
            E G P V+T+V +Y+ WI D I
Sbjct: 204 PE-GAPEVFTKVGSYVSWIQDII 225

>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein (cap37) Length = 225

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 103/246 (41%), Gaps = 36/246 (14%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +   Q+P++A+I  + R           CGGALI  R+V+TAA C      G  
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRH---------FCGGALIHARFVMTAASCFQSQNPGV- 50
Query: 168 EPYIVHVGSIDL--EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
               V +G+ DL   +  S  +  I   +    Y   + LND+ L +L  +A L+  +  
Sbjct: 51  --STVVLGAYDLRRRERQSRQTFSISS-MSENGYDPQQNLNDLMLLQLDREANLTSSVTI 107
Query: 226 ICLPYDTNLRSELFERKTPF-VAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
           + LP    L++   E  T   VAGWGS    G LS   R V ++V    +CR        
Sbjct: 108 LPLP----LQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR-------- 155
Query: 285 TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
               N +C GVL             PL+     +    GV S+       G P  +TRV 
Sbjct: 156 ---PNNVCTGVLTRRGGICNGDQGTPLV----CEGLAHGVASFSLGPCGRG-PDFFTRVA 207
Query: 345 NYIQWI 350
            +  WI
Sbjct: 208 LFRDWI 213

>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp Length = 225

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 103/246 (41%), Gaps = 36/246 (14%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +   Q+P++A+I  + R           CGGALI  R+V+TAA C      G  
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRH---------FCGGALIHARFVMTAASCFQSQNPGV- 50
Query: 168 EPYIVHVGSIDL--EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
               V +G+ DL   +  S  +  I   +    Y   + LND+ L +L  +A L+  +  
Sbjct: 51  --STVVLGAYDLRRRERQSRQTFSISS-MSENGYDPQQNLNDLMLLQLDREANLTSSVTI 107
Query: 226 ICLPYDTNLRSELFERKTPF-VAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
           + LP    L++   E  T   VAGWGS    G LS   R V ++V    +CR        
Sbjct: 108 LPLP----LQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR-------- 155
Query: 285 TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
               N +C GVL             PL+     +    GV S+       G P  +TRV 
Sbjct: 156 ---PNNVCTGVLTRRGGICNGDGGTPLV----CEGLAHGVASFSLGPCGRG-PDFFTRVA 207
Query: 345 NYIQWI 350
            +  WI
Sbjct: 208 LFRDWI 213

>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal Synthesized Substrate Length = 240

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 109/245 (44%), Gaps = 23/245 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG        P+MA++       + NG    +CGG L+  ++VLTAAHC++       
Sbjct: 1   IIGGREVIPHSRPYMASL-------QRNG--SHLCGGVLVHPKWVLTAAHCLAQRMAQLR 51
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSDLIQPI 226
              ++ + ++D    S G++  I+  I H +Y     L N++AL +L      S  I+P+
Sbjct: 52  --LVLGLHTLD----SPGLTFHIKAAIQHPRYKPVPALENNLALLQLDGKVKPSRTIRPL 105
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP     R  +       +AGWG T   G LS  LR + + V+D   C      +  ++
Sbjct: 106 ALPSK---RQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNN-SRFWNGSL 161
Query: 287 NENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTN 345
           + +++C                 PL+        + GV+S+  + C ++  P V T V  
Sbjct: 162 SPSMVCLAADSKDQAPCKGDSGGPLV--CGKGRVLAGVLSFSSRVCTDIFKPPVATAVAP 219
Query: 346 YIQWI 350
           Y+ WI
Sbjct: 220 YVSWI 224

>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein (Cap37) Length = 225

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 104/246 (42%), Gaps = 36/246 (14%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +   Q+P++A+I       +  G  E  CGGALI  R+V+TAA C      G  
Sbjct: 1   IVGGRKARPRQFPFLASI-------QNQGSHE--CGGALIHARFVMTAASCFQSQNPGV- 50
Query: 168 EPYIVHVGSIDL--EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
               V +G+ DL   +  S  +  I   +    Y   + LND+ L +L  +A L+  +  
Sbjct: 51  --STVVLGAYDLRRRERQSRQTFSISS-MSENGYDPQQNLNDLMLLQLDREANLTSSVTI 107
Query: 226 ICLPYDTNLRSELFERKTPF-VAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
           + LP    L++   E  T   VAGWGS    G LS   R V ++V    +CR        
Sbjct: 108 LPLP----LQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR-------- 155
Query: 285 TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
               N +C GVL             PL+     +    GV S+       G P  +TRV 
Sbjct: 156 ---PNNVCTGVLTRRGGICNGDGGTPLV----CEGLAHGVASFSLGPCGRG-PDFFTRVA 207
Query: 345 NYIQWI 350
            +  WI
Sbjct: 208 LFRDWI 213

>pdb|1KYN|B Chain B, Cathepsin-G Length = 235

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 105/246 (42%), Gaps = 31/246 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  S     P+MA +  +      +   +  CGG L+ + +VLTAAHC   +     
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQ------SPAGQSRCGGFLVREDFVLTAAHCWGSNIN--- 51
Query: 168 EPYIVHVGSIDLE-DTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ +++   ++   I   R I H QY      NDI L +L      +  + P+
Sbjct: 52  ----VTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPV 107
Query: 227 CLPYDTNLRSELFERKTPF--VAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
            LP     R++   R      VAGWG    R   +  LR VQ+ V  + +C +IF +Y  
Sbjct: 108 ALP-----RAQEGLRPGTLCTVAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRIFGSYDP 161
Query: 285 TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
                 +C G               PL+          G+VSYGK       P V+TRV+
Sbjct: 162 ---RRQICVGDRRERKAAFKGDSGGPLL----CNNVAHGIVSYGKSSGVP--PEVFTRVS 212
Query: 345 NYIQWI 350
           +++ WI
Sbjct: 213 SFLPWI 218

>pdb|1AU8|A Chain A, Human Cathepsin G Length = 224

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 105/246 (42%), Gaps = 31/246 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  S     P+MA +  +      +   +  CGG L+ + +VLTAAHC   +     
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQ------SPAGQSRCGGFLVREDFVLTAAHCWGSNIN--- 51
Query: 168 EPYIVHVGSIDLE-DTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ +++   ++   I   R I H QY      NDI L +L      +  + P+
Sbjct: 52  ----VTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPV 107
Query: 227 CLPYDTNLRSELFERKTPF--VAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
            LP     R++   R      VAGWG    R   +  LR VQ+ V  + +C +IF +Y  
Sbjct: 108 ALP-----RAQEGLRPGTLCTVAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRIFGSYDP 161
Query: 285 TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
                 +C G               PL+          G+VSYGK       P V+TRV+
Sbjct: 162 ---RRQICVGDRRERKAAFKGDSGGPLL----CNNVAHGIVSYGKSSGVP--PEVFTRVS 212
Query: 345 NYIQWI 350
           +++ WI
Sbjct: 213 SFLPWI 218

>pdb|4GSO|A Chain A, Structure Of Jararacussin-I Length = 232

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 91/218 (41%), Gaps = 19/218 (8%)
Query: 140 WMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQY 199
           + CG  LI + +V+TAAHC   D+T       VH   +  ED  +      E+ I   + 
Sbjct: 23  YFCGLTLINQEWVVTAAHC---DSTNFQMQLGVHSKKVLNEDEQT--RNPKEKFICPNKN 77
Query: 200 TSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLS 259
            S     DI L +L +    S  I P+ LP +      +       + GWGS        
Sbjct: 78  MSEVLDKDIMLIKLDKPISNSKHIAPLSLPSNPPSVGSVCR-----IMGWGSITIPNETY 132
Query: 260 PKLRH-VQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTK 318
           P + +   I++VD   C+  ++   A   +  LCAGVL             PL+      
Sbjct: 133 PDVPYCANINLVDYEVCQGAYNGLPA---KTTLCAGVLEGGKDTCVGDSGGPLI----CN 185
Query: 319 YYIIGVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNIS 355
               G+VSYG   C +   PG+YT V +Y  WI  NI+
Sbjct: 186 GQFQGIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRNIA 223

>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom Length = 234

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 97/223 (43%), Gaps = 28/223 (12%)
Query: 140 WMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQY 199
           ++CGG LI + +V+TAAHC   D+      + VH   I  ED       E  R    + +
Sbjct: 24  FLCGGTLINQDWVVTAAHC---DSNNFQLLFGVHSKKILNED-------EQTRDPKEKFF 73
Query: 200 TSARKLND-----IALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVF 254
              RK +D     I L +L      S+ I P+ LP        +       + GWG T+ 
Sbjct: 74  CPNRKKDDEVDKDIMLIKLDSSVSNSEHIAPLSLPSSPPSVGSVCR-----IMGWGKTIP 128
Query: 255 RGPLSPKLRH-VQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMY 313
              + P + H   I+++D+  CR  +S     +    LCAG+L             PL+ 
Sbjct: 129 TKEIYPDVPHCANINILDHAVCRTAYS--WRQVANTTLCAGILQGGRDTCHFDSGGPLI- 185
Query: 314 PLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 355
                    G+VS+G   C + G PGVYT+V +Y+ WI   I+
Sbjct: 186 ---CNGIFQGIVSWGGHPCGQPGEPGVYTKVFDYLDWIKSIIA 225

>pdb|2RDL|A Chain A, Hamster Chymase 2 Length = 226

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 102/243 (41%), Gaps = 24/243 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GGT       P+MA +         +      C G LI + +V+TAAHC     T   
Sbjct: 1   IIGGTECRPHARPYMAYLEIVTPENHLSA-----CSGFLIRRNFVMTAAHCAGRSITVLL 55
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
             +   V     EDT     +E+E+   H +Y     LNDI L +L+E A L+  +  + 
Sbjct: 56  GAHNKKVK----EDTWQ--KLEVEKQFPHPKYDDRLVLNDIMLLKLKEKANLTLGVGTLP 109
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           +   +N    +   +     GWG T    P S  L+ V++ ++D   C+  F ++     
Sbjct: 110 ISAKSN---SIPPGRVCRAVGWGRTNVNEPPSDTLQEVKMRILDPQACKH-FEDFH---Q 162
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
           E  LC G               PL+     +    G+ SY  + A+   P V+TR+++Y 
Sbjct: 163 EPQLCVGNPKKIRNVYKGDSGGPLLCAGIAQ----GIASYVLRNAKP--PSVFTRISHYR 216
Query: 348 QWI 350
            WI
Sbjct: 217 PWI 219

>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin With The Inhibitor Sdz 229-357 Length = 147

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 15/151 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G+ +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
                 +V +G       E     +S+ +E+  IH +Y     L+ DIAL +L++    S
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISM-LEKIYIHPRYNWRENLDRDIALMKLKKPVAFS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS 251
           D I P+CLP      S L       V GWG+
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGN 143

>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure Solution And Refinement At 1.8 Angstroms Resolution Length = 235

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 101/257 (39%), Gaps = 44/257 (17%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   E+   PW  A+             E++CGG LI   +V+TAAHC S +     
Sbjct: 1   IVGGYKCEKNSQPWQVAV-----------INEYLCGGVLIDPSWVITAAHCYSNN----- 44
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSA-----------RKLNDIALFRLRE 215
             Y V +G  +L +D        + +   H  Y                 ND+ L  L E
Sbjct: 45  --YQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSE 102
Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST-VFRGPLSPKLRHVQISVVDNPK 274
            A ++  ++ I LP       E     T   +GWGST      +S  L+ V I ++ N K
Sbjct: 103 PADITGGVKVIDLP-----TKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEK 157
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAE 333
           C      Y   + + +LCAG +             PL+        + G+ S G   CA+
Sbjct: 158 C---IETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLI----CDGVLQGITSGGATPCAK 210
Query: 334 VGFPGVYTRVTNYIQWI 350
              P +Y ++  +  WI
Sbjct: 211 PKTPAIYAKLIKFTSWI 227

>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 131

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IV G  +  G WPW  ++  K             CGG+LI + +V+TAAHC      G  
Sbjct: 1   IVNGEEAVPGSWPWQVSLQDKTGFH--------FCGGSLINENWVVTAAHC------GVT 46
Query: 168 EPYIVHVGSIDLEDTSSGVS-IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
              +V  G  D   +S  +  ++I +   + +Y S    NDI L +L   A  S  +  +
Sbjct: 47  TSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAV 106
Query: 227 CLPYDTNLRSELFERKTPFVAGWGST 252
           CLP  ++   +     T    GWG T
Sbjct: 107 CLPSASD---DFAAGTTCVTTGWGLT 129

>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 150

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 69/151 (45%), Gaps = 15/151 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCV---SPDTT 164
           IV G  +E G  PW   +  K          E +CG +LI+ R+VLTAAHC+     D  
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRK-------SPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 165 GEYEPYIVHVGS---IDLEDTSSGVSIEIERPIIHEQYTSARKLN-DIALFRLREDAPLS 220
              +  +V +G       E     +S+ +++  IH +Y     L+ DIAL +L+    LS
Sbjct: 54  FTVDDLLVRIGKHSRTRYERKVEKISM-LDKIYIHPRYNWKENLDRDIALLKLKRPIELS 112
Query: 221 DLIQPICLPYDTNLRSELFERKTPFVAGWGS 251
           D I P+CLP        L       V GWG+
Sbjct: 113 DYIHPVCLPDKQTAAKLLHAGFKGRVTGWGN 143

>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal Plasma Length = 237

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 113/261 (43%), Gaps = 42/261 (16%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG   E+   PW  A+           +  + CGG L+  ++VLTAAHC+S D     
Sbjct: 1   IIGGWECEKHSKPWQVAV---------YHQGHFQCGGVLVHPQWVLTAAHCMSDD----- 46
Query: 168 EPYIVHVGSIDL---EDTS-------SGVSIEIERPIIHEQYTSARK--LNDIALFRLRE 215
             Y + +G  +L   EDT+       S +  + +  ++ ++Y        +D+ L RL +
Sbjct: 47  --YQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQ 104
Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS-TVFRGPLSPKLRHVQISVVDNPK 274
            A ++D ++ + LP       E     T + +GWG  + F    S  L+ V++ +  N K
Sbjct: 105 PARITDAVKILDLP-----TQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEK 159
Query: 275 CRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYG-KKCAE 333
           C +    Y   + E +LCA                 L+          G+ S+G  +CA+
Sbjct: 160 CARA---YPEKMTEFVLCATHRDDSGSICLGDSGGALI----CDGVFQGITSWGYSECAD 212
Query: 334 VGFPGVYTRVTNYIQWIADNI 354
                V+T+V  + +WI + I
Sbjct: 213 FNDNFVFTKVMPHKKWIKETI 233

>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With Leupeptin Length = 227

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 105/253 (41%), Gaps = 36/253 (14%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+ G+  +    PW AA+       R N   +  CG  L+  +++LTAAHC         
Sbjct: 1   IINGSDCDMHTQPWQAALLL-----RPN---QLYCGAVLVHPQWLLTAAHC-------RK 45
Query: 168 EPYIVHVGSIDLEDT--SSGVSIEIERPIIHEQYTSARKLNDIALFRL-REDAPLSDLIQ 224
           + + V +G   L     S     +  + I H  Y+     ND+ L +L R   P  D ++
Sbjct: 46  KVFRVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKD-VR 104
Query: 225 PICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNY 282
           PI      N+ S      T   V+GWG+T       PK L+ + ISV+   +C      Y
Sbjct: 105 PI------NVSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDA---Y 155
Query: 283 GATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYT 341
              I++ + CAG                   P+     + G+VS+G   CA    PGVYT
Sbjct: 156 PRQIDDTMFCAGDKAGRDSCQGDSGG-----PVVCNGSLQGLVSWGDYPCARPNRPGVYT 210
Query: 342 RVTNYIQWIADNI 354
            +  + +WI + I
Sbjct: 211 NLCKFTKWIQETI 223

>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The Venom Of Copperhead Snake Agkistrodon Contortrix Contortrix Length = 231

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 93/230 (40%), Gaps = 35/230 (15%)
Query: 134 ANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERP 193
           ANG    +CGG LI + +VLTA HC       +     +++G  +L+  +     +  R 
Sbjct: 20  ANGS---LCGGTLINQEWVLTARHC-------DRGNMRIYLGMHNLKVLNK----DALRR 65
Query: 194 IIHEQYTSARKLND------IALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVA 247
              E+Y      ND      I L RL      S  I P+ LP +      +       + 
Sbjct: 66  FPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSVGSVCR-----IM 120
Query: 248 GWGSTVFRGPLSPKLRH-VQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXX 306
           GWG+        P + H   I+++D   C+  +    AT     LCAG+L          
Sbjct: 121 GWGTITSPNATLPDVPHCANINILDYAVCQAAYKGLAATT----LCAGILEGGKDTCKGD 176
Query: 307 XXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 355
              PL+          G++S G   CA+   PG+YT+V +Y  WI   IS
Sbjct: 177 SGGPLI----CNGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIIS 222

>pdb|3H7T|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease Paralogue S-D1 (Smipp-S-D1) Length = 235

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 104/252 (41%), Gaps = 27/252 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  S+  + PW  A+G  +       KP   CGG+++T  +V+TAA CV      + 
Sbjct: 1   IIGGKKSDITKEPW--AVGVLVDE-----KP--FCGGSILTANFVITAAQCVDGTKPSDI 51
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD-LIQPI 226
               +H GS     T+ G S+ + + I   +Y      N+ A+        L D   + I
Sbjct: 52  S---IHYGS--SYRTTKGTSV-MAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKI 105
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
            LP   +L  +     +  V+GWGST F+    S  L     +VVD   C + +    A 
Sbjct: 106 ELP---SLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEAD 162
Query: 286 --INENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV 343
             I + + CAG               P +        ++GV SY        FP V+ RV
Sbjct: 163 KYIYDGVFCAGGEYDETYIGYGDAGDPAV----QNGTLVGVASYISSMPS-EFPSVFLRV 217
Query: 344 TNYIQWIADNIS 355
             Y+  I D IS
Sbjct: 218 GYYVLDIKDIIS 229

>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom Thrombin- Like Enzyme From Agkistrodon Halys Length = 238

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 88/217 (40%), Gaps = 16/217 (7%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYT 200
            CGG LI + +VLTAAHC   D         +H   +  ED  + V  E    +  + YT
Sbjct: 27  FCGGTLINQEWVLTAAHC---DRKNFRIKLGMHSKKVPNEDEQTRVPKEKFFCLSSKNYT 83
Query: 201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP 260
              K  DI L RL  D+P+ +      +   +   S         + GWG         P
Sbjct: 84  LWDK--DIMLIRL--DSPVKNSKH---IAPFSLPSSPPSVGSVCRIMGWGRISPTEGTYP 136
Query: 261 KLRH-VQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKY 319
            + H V I++++   CR  +  +        LCAG+L             PL+       
Sbjct: 137 DVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLI----CNG 192
Query: 320 YIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 355
              G+ S+G   CA+   P  YT+V +++ WI + I+
Sbjct: 193 QFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIA 229

>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 20/219 (9%)
Query: 140 WMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQY 199
           + CGG LI   +V+TAAHC   D+T       VH   +  ED  +      E+ I   + 
Sbjct: 24  FFCGGTLINPEWVVTAAHC---DSTNFQMQLGVHSKKVLNEDEQT--RNPKEKFICPNKN 78
Query: 200 TSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLS 259
            +     DI L +L  D P+S+      +   +   S         + GWGS        
Sbjct: 79  NNEVLDKDIMLIKL--DKPISNSKH---IAPLSLPSSPPSVGSVCRIMGWGSITPVKETF 133
Query: 260 PKLRH-VQISVVDNPKCRQIFSNYGATINE-NILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
           P + +   I+++D+  C+   + Y   + E   LCAG++             PL+     
Sbjct: 134 PDVPYCANINLLDHAVCQ---AGYPELLAEYRTLCAGIVQGGKDTCGGDSGGPLI----C 186
Query: 318 KYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 355
                G+VSYG   C +   PG+YT V +Y  WI  NI+
Sbjct: 187 NGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIA 225

>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP Length = 234

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 22/243 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG P   G  PW  ++    R R+     +  CGG+L+ ++++LTA  C S       
Sbjct: 1   VVGGHP---GNSPWTVSL----RNRQG----QHFCGGSLVKEQWILTARQCFS-SCHMPL 48
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
             Y V +G++  ++   G       P+   +       + + L +L     L+  +  IC
Sbjct: 49  TGYEVWLGTL-FQNPQHGEPSLQRVPV--AKMVCGPSGSQLVLLKLERSVTLNQRVALIC 105
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP +  +     + +   +AGWG T   G     L    ++V+ N +C      +   + 
Sbjct: 106 LPPEWYVVPPGTKCE---IAGWGETKGTGN-DTVLNVALLNVISNQECN---IKHRGRVR 158
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
           E+ +C   L             PL       + + G++   + CA   +P V+TRV+ ++
Sbjct: 159 ESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFV 218
Query: 348 QWI 350
            WI
Sbjct: 219 DWI 221

>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 128

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 117 GQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGS 176
           G WPW  ++  K             CGG+LI++ +V+TAAHC      G     +V  G 
Sbjct: 7   GSWPWQVSLQDKTGFH--------FCGGSLISEDWVVTAAHC------GVKTSDVVVAGE 52
Query: 177 IDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLR 235
            D       + + +I +   + ++      NDI L +L   A  S+ +  +CLP   N+ 
Sbjct: 53  FDQGSDEENIQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLP---NVD 109
Query: 236 SELFERKTPFVAGWGST 252
            +          GWG T
Sbjct: 110 DDFPPGTVCATTGWGKT 126

>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 20/219 (9%)
Query: 140 WMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQY 199
           + CGG LI   +V+TAAHC S D   +     VH   +  ED  +      E+ I   + 
Sbjct: 24  FFCGGTLINPEWVVTAAHCDSTDFQMQLG---VHSKKVLNEDEQT--RNPKEKFICPNKN 78
Query: 200 TSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLS 259
            +     DI L +L  D P+S+      +   +   S         + GWGS        
Sbjct: 79  NNEVLDKDIMLIKL--DKPISNSKH---IAPLSLPSSPPSVGSVCRIMGWGSITPVKETF 133
Query: 260 PKLRH-VQISVVDNPKCRQIFSNYGATINE-NILCAGVLXXXXXXXXXXXXXPLMYPLDT 317
           P + +   I+++D+  C+   + Y   + E   LCAG++             PL+     
Sbjct: 134 PDVPYCANINLLDHAVCQ---AGYPELLAEYRTLCAGIVQGGKDTCGGDSGGPLI----C 186
Query: 318 KYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 355
                G+VSYG   C +   PG+YT V +Y  WI  NI+
Sbjct: 187 NGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIA 225

>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 131

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 18/146 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IV G  +  G WPW  ++  K             CGG+LI++ +V+TAAHC      G  
Sbjct: 1   IVNGEDAIPGSWPWQVSLQDKTGFH--------FCGGSLISEDWVVTAAHC------GVK 46
Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
              +V  G  D       + + +I +   + ++      NDI L +L   A  S+ +  +
Sbjct: 47  TSDVVVAGEFDQGSDEENIQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAV 106
Query: 227 CLPYDTNLRSELFERKTPFVAGWGST 252
            LP   N+  +          GWG T
Sbjct: 107 SLP---NVDDDFPPGTVCATTGWGKT 129

>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin) Length = 221

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 35/251 (13%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKP-EWMCGGALITKRYVLTAAHCVSPDTTGE 166
           IVGG  ++    P+MA++  +       G P    CGG LI   +VLTAAHC+  D    
Sbjct: 1   IVGGHEAQPHSRPYMASLQMR-------GNPGSHFCGGTLIHPSFVLTAAHCLR-DIPQR 52
Query: 167 YEPYIVHVGSIDLED-TSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
               ++   ++  ++ T    S+     +    Y +  KLNDI L +L   A LS  +  
Sbjct: 53  LVNVVLGAHNVRTQEPTQQHFSVA---QVFLNNYDAENKLNDILLIQLSSPANLSASVAT 109
Query: 226 ICLPYDTNLRSELFERKTPFVA-GWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
           + LP     + +     T  +A GWG      P +  L+ + ++VV    CR        
Sbjct: 110 VQLPQ----QDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTF-FCR-------- 156
Query: 285 TINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRV 343
               + +C  V              PL+        I G+ S+    CA   FP  +TRV
Sbjct: 157 ---PHNICTFVPRRKAGICFGDSGGPLI----CDGIIQGIDSFVIWGCATRLFPDFFTRV 209
Query: 344 TNYIQWIADNI 354
             Y+ WI   +
Sbjct: 210 ALYVDWIRSTL 220

>pdb|2IKD|A Chain A, Solution Structure Of The First Clip Domain In Pap2 Length = 66

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 10 CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCP 63
          C+ P N+ GTC S+ QC     I++ +    +  ++++ S CG +G+ PKVCCP
Sbjct: 13 CTLPNNDKGTCKSLLQCDVASKIISKKPRTAQDEKFLRESACGFDGQTPKVCCP 66

>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Closed-Form) Length = 234

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 101/253 (39%), Gaps = 33/253 (13%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG      + P++ A+         +      C GALI + +VLTAAHC   D     
Sbjct: 1   VVGGDECNINEHPFLVAL-------YTSASSTIHCAGALINREWVLTAAHC---DRRNIR 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERP---IIHEQYTSARKLNDIALFRLREDAPLSDLIQ 224
               +H  +I  ED      I + R     ++ ++ +     DI L RLR     S  I 
Sbjct: 51  IKLGMHSKNIRNEDEQ----IRVPRGKYFCLNTKFPNGLD-KDIMLIRLRRPVTYSTHIA 105
Query: 225 PICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRH-VQISVVDNPKCRQIFSNYG 283
           P+ LP     RS     +   + GWG         P + H   I +V +  C  ++    
Sbjct: 106 PVSLPS----RSRGVGSRC-RIMGWGK--ISTTTYPDVPHCTNIFIVKHKWCEPLYPWVP 158
Query: 284 ATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTR 342
           A  +   LCAG+L             PL+   +      G+V+ G + C +   P VYT+
Sbjct: 159 A--DSRTLCAGILKGGRDTCHGDSGGPLICNGEMH----GIVAGGSEPCGQHLKPAVYTK 212
Query: 343 VTNYIQWIADNIS 355
           V +Y  WI   I+
Sbjct: 213 VFDYNNWIQSIIA 225

>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of Porcine Epsilon-Trypsin Length = 98

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 262 LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 321
           L+ ++  V+ N  C+   S+Y   I  N++C G L             P++        +
Sbjct: 10  LQCLKAPVLSNSSCK---SSYPGQITGNMICVGFLQGGKDSCQGDSGGPVV----CNGQL 62
Query: 322 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 63  QGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 96

>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 152

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 206 NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP----LSPK 261
           +D+ L RL+  A ++D ++ + LP       EL    T   +GWGS +  GP       +
Sbjct: 8   HDLMLLRLQSPAKITDAVKVLELP---TQEPEL--GSTCEASGWGS-IEPGPDDFEFPDE 61
Query: 262 LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 321
           ++ VQ++++ N  C     +    + E++LCAG L             PL+         
Sbjct: 62  IQCVQLTLLQNTFCADAHPD---KVTESMLCAGYLPGGKDTCMGDSGGPLI----CNGMW 114
Query: 322 IGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 355
            G+ S+G   C     P +YT++  Y+ WI D I+
Sbjct: 115 QGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149

>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto Catalyticaly Produced Native Peptide At 2.15 A Resolution Length = 98

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 262 LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYI 321
           L+ ++  V+ +  C+   S+Y   I  N++C G L             P++        +
Sbjct: 10  LQCLKAPVLSDSSCK---SSYPGQITGNMICVGFLEGGKDSCQGDSGGPVV----CNGQL 62
Query: 322 IGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
            G+VS+G  CA+   PGVYT+V NY+ WI   I+
Sbjct: 63  QGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIA 96

>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin Length = 234

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 91/225 (40%), Gaps = 32/225 (14%)
Query: 140 WMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQY 199
           + C G LI + +VLTAAHC   D T       VH   +  ED  +        P   E++
Sbjct: 24  FFCSGTLINEEWVLTAAHC---DNTNFQMKLGVHSKKVLNEDEQT------RNP--KEKF 72
Query: 200 TSARKLN------DIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTV 253
               K N      DI L +L      S+ I P+ LP        +       + GWGS  
Sbjct: 73  ICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSVGSVCH-----IMGWGSIT 127
Query: 254 FRGPLSPKLRHVQ-ISVVDNPKCRQIFSNYGATINE-NILCAGVLXXXXXXXXXXXXXPL 311
                 P + +   I+++D+  C+   + Y   + E   LCAG+L             PL
Sbjct: 128 PIKVTYPDVPYCAYINLLDDAVCQ---AGYPELLTEYRTLCAGILEGGKDTCGGDSGGPL 184
Query: 312 MYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNIS 355
           +          G+VS+G   C +   PGVYT+V +Y  WI   I+
Sbjct: 185 I----CNGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIA 225

>pdb|2I6Q|A Chain A, Complement Component C2a Length = 517

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 23/130 (17%)
Query: 109 VGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYE 168
           +    S++ + PW   I           K +  C GALI+ ++VLTAAHC       ++ 
Sbjct: 233 MSANASDQERTPWHVTI---------KPKSQETCRGALISDQWVLTAAHCFRDGN--DHS 281
Query: 169 PYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLN---------DIALFRLREDAPL 219
            + V+VG      +  G    IE+ +I   +    K N         DIAL +L +   +
Sbjct: 282 LWRVNVGD---PKSQWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKM 338
Query: 220 SDLIQPICLP 229
           S   +PICLP
Sbjct: 339 STHARPICLP 348

>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3- And C5- Convertase Of Human Complement Length = 509

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 23/130 (17%)
Query: 109 VGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYE 168
           +    S++ + PW   I           K +  C GALI+ ++VLTAAHC       ++ 
Sbjct: 225 MSANASDQERTPWHVTI---------KPKSQETCRGALISDQWVLTAAHCFRDGN--DHS 273
Query: 169 PYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLN---------DIALFRLREDAPL 219
            + V+VG      +  G    IE+ +I   +    K N         DIAL +L +   +
Sbjct: 274 LWRVNVGD---PKSQWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKM 330
Query: 220 SDLIQPICLP 229
           S   +PICLP
Sbjct: 331 STHARPICLP 340

>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B Length = 497

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 23/119 (19%)
Query: 120 PWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL 179
           PW A I   IR  + +      C GA++++ +VLTAAHC + D             SI +
Sbjct: 227 PWQAKISV-IRPSKGHES----CMGAVVSEYFVLTAAHCFTVDDKEH---------SIKV 272
Query: 180 EDTSSGVSIEIERPIIHEQYTSARKLN---------DIALFRLREDAPLSDLIQPICLP 229
                   +EIE  + H  Y    K           D+AL +L+        I+PICLP
Sbjct: 273 SVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 331

>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin Length = 507

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 23/119 (19%)
Query: 120 PWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL 179
           PW A I   IR  + +      C GA++++ +VLTAAHC + D             SI +
Sbjct: 235 PWQAKISV-IRPSKGHES----CMGAVVSEYFVLTAAHCFTVDDKEH---------SIKV 280
Query: 180 EDTSSGVSIEIERPIIHEQYTSARKLN---------DIALFRLREDAPLSDLIQPICLP 229
                   +EIE  + H  Y    K           D+AL +L+        I+PICLP
Sbjct: 281 SVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 339

>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With Factors B And D Length = 732

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 23/119 (19%)
Query: 120 PWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL 179
           PW A I   IR  + +      C GA++++ +VLTAAHC + D             SI +
Sbjct: 460 PWQAKISV-IRPSKGHES----CMGAVVSEYFVLTAAHCFTVDDKEH---------SIKV 505
Query: 180 EDTSSGVSIEIERPIIHEQYTSARKLN---------DIALFRLREDAPLSDLIQPICLP 229
                   +EIE  + H  Y    K           D+AL +L+        I+PICLP
Sbjct: 506 SVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 564

>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B Length = 741

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 23/119 (19%)
Query: 120 PWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL 179
           PW A I   IR  + +      C GA++++ +VLTAAHC + D             SI +
Sbjct: 469 PWQAKISV-IRPSKGHES----CMGAVVSEYFVLTAAHCFTVDDKEH---------SIKV 514
Query: 180 EDTSSGVSIEIERPIIHEQYTSARKLN---------DIALFRLREDAPLSDLIQPICLP 229
                   +EIE  + H  Y    K           D+AL +L+        I+PICLP
Sbjct: 515 SVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 573

>pdb|2OK5|A Chain A, Human Complement Factor B Length = 752

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 23/119 (19%)
Query: 120 PWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL 179
           PW A I   IR  + +      C GA++++ +VLTAAHC + D             SI +
Sbjct: 479 PWQAKISV-IRPSKGHES----CMGAVVSEYFVLTAAHCFTVDDKEH---------SIKV 524
Query: 180 EDTSSGVSIEIERPIIHEQYTSARKLN---------DIALFRLREDAPLSDLIQPICLP 229
                   +EIE  + H  Y    K           D+AL +L+        I+PICLP
Sbjct: 525 SVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 583

>pdb|1DLE|A Chain A, Factor B Serine Protease Domain Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 23/119 (19%)
Query: 120 PWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL 179
           PW A I   IR  + +      C GA++++ +VLTAAHC + D             SI +
Sbjct: 28  PWQAKISV-IRPSKGHES----CMGAVVSEYFVLTAAHCFTVDDKEH---------SIKV 73
Query: 180 EDTSSGVSIEIERPIIHEQYTSARKLN---------DIALFRLREDAPLSDLIQPICLP 229
                   +EIE  + H  Y    K           D+AL +L+        I+PICLP
Sbjct: 74  SVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP 132

>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl 101, 146 Length = 218

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 32/244 (13%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +    WP+M ++      + A G     CG  LI   +V++AAHCV+       
Sbjct: 1   IVGGRRARPHAWPFMVSL------QLAGGH---FCGATLIAPNFVMSAAHCVANVNVRAV 51
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              +   G+ +L        +   + I  + Y     LNDI + +L   A ++  +Q   
Sbjct: 52  RVVL---GAHNLSRREPTRQVFAVQRIFEDGYDPVNLLNDIVILQLNGSATINANVQVAQ 108
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP        L         GWG       ++  L+ + ++VV +  CR+  SN    + 
Sbjct: 109 LPAQGR---RLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTS-LCRR--SNVCTLVR 162
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTNY 346
                AGV                  PL     I G+ S+ +  CA   +P  +  V  +
Sbjct: 163 GRQ--AGVCFGDSGS-----------PLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQF 209
Query: 347 IQWI 350
           + WI
Sbjct: 210 VNWI 213

>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms Resolution Length = 218

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 91/244 (37%), Gaps = 32/244 (13%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +    WP+M ++  +             CG  LI   +V++AAHCV+       
Sbjct: 1   IVGGRRARPHAWPFMVSLQLR---------GGHFCGATLIAPNFVMSAAHCVANVNVRAV 51
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              +   G+ +L        +   + I  + Y     LNDI + +L   A ++  +Q   
Sbjct: 52  RVVL---GAHNLSRREPTRQVFAVQRIFEDGYDPVNLLNDIVILQLNGSATINANVQVAQ 108
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP        L         GWG       ++  L+ + ++VV +  CR+  SN    + 
Sbjct: 109 LPAQGR---RLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTS-LCRR--SNVCTLVR 162
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTNY 346
                AGV                  PL     I G+ S+ +  CA   +P  +  V  +
Sbjct: 163 GRQ--AGVCFGDSGS-----------PLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQF 209
Query: 347 IQWI 350
           + WI
Sbjct: 210 VNWI 213

>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of The Porcine Alpha Trypsin Length = 125

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYI-VHVG--SIDLEDTSSGVSIEIERPIIHE 197
            CGG+LI  ++V++AAHC        Y+  I V +G  +ID+ + +    I   + I H 
Sbjct: 24  FCGGSLINSQWVVSAAHC--------YKSRIQVRLGEHNIDVLEGNEQF-INAAKIITHP 74
Query: 198 QYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST 252
            +      NDI L +L   A L+  +  + LP     RS         ++GWG+T
Sbjct: 75  NFNGNTLDNDIMLIKLSSPATLNSRVATVSLP-----RSCAAAGTECLISGWGNT 124

>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 97

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 261 KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 320
           +L+   + ++ N  C++    +G  I + ++CAG               PL+   +  + 
Sbjct: 6   RLQQASLPLLSNTNCKKY---WGTKIKDAMICAGA--SGVSSCMGDSGGPLVCKKNGAWT 60
Query: 321 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           ++G+VS+G        PGVY RVT  + W+   ++
Sbjct: 61  LVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 95

>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed With A Synthetic Inhibitor Length = 96

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 261 KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 320
           +L+   + ++ N  C++    +G  I + ++CAG               PL+   +  + 
Sbjct: 5   RLQQASLPLLSNTNCKKY---WGTKIKDAMICAGA--SGVSSCMGDSGGPLVCKKNGAWT 59
Query: 321 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           ++G+VS+G        PGVY RVT  + W+   ++
Sbjct: 60  LVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 94

>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte Elastase (Pmn Elastase) And The Third Domain Of The Turkey Ovomucoid Inhibitor Length = 218

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 90/244 (36%), Gaps = 32/244 (13%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +    WP+M ++  +             CG  LI   +V++AAHCV+       
Sbjct: 1   IVGGRRARPHAWPFMVSLQLR---------GGHFCGATLIAPNFVMSAAHCVANVNVRAV 51
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              +   G+ +L        +   + I    Y     LNDI + +L   A ++  +Q   
Sbjct: 52  RVVL---GAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQ 108
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP        L         GWG       ++  L+ + ++VV +  CR+  SN    + 
Sbjct: 109 LPAQGR---RLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTS-LCRR--SNVCTLVR 162
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTNY 346
                AGV                  PL     I G+ S+ +  CA   +P  +  V  +
Sbjct: 163 GRQ--AGVCFGDSGS-----------PLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQF 209
Query: 347 IQWI 350
           + WI
Sbjct: 210 VNWI 213

>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human Leukocyte Elastase In A Complex With A Valine Chloromethyl Ketone Inhibitor Length = 218

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 90/244 (36%), Gaps = 32/244 (13%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +    WP+M ++  +             CG  LI   +V++AAHCV+       
Sbjct: 1   IVGGRRARPHAWPFMVSLQLR---------GGHFCGATLIAPNFVMSAAHCVANVNVRAV 51
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              +   G+ +L        +   + I    Y     LNDI + +L   A ++  +Q   
Sbjct: 52  RVVL---GAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQ 108
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP        L         GWG       ++  L+ + ++VV +  CR+  SN    + 
Sbjct: 109 LPAQGR---RLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTS-LCRR--SNVCTLVR 162
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTNY 346
                AGV                  PL     I G+ S+ +  CA   +P  +  V  +
Sbjct: 163 GRQ--AGVCFGDSGS-----------PLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQF 209
Query: 347 IQWI 350
           + WI
Sbjct: 210 VNWI 213

>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase Length = 218

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 91/244 (37%), Gaps = 32/244 (13%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +    WP+M ++  +             CG  LI   +V++AAHCV+       
Sbjct: 1   IVGGRRARPHAWPFMVSLQLR---------GGHFCGATLIAPNFVMSAAHCVANVNVRAV 51
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              +   G+ +L        +   + I    Y     LNDI + +L   A ++  +Q   
Sbjct: 52  RVVL---GAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQ 108
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP        L         GWG       ++  L+ + ++VV +  CR+  SN    + 
Sbjct: 109 LPAQGR---RLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTS-LCRR--SNVCTLVR 162
Query: 288 ENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTNY 346
                AGV                  PL     I G+ S+ +  CA   +P  +  V  +
Sbjct: 163 GRQ--AGVCFGDXGS-----------PLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQF 209
Query: 347 IQWI 350
           + WI
Sbjct: 210 VNWI 213

>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 99

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 261 KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLXXXXXXXXXXXXXPLMYPLDTKYY 320
           KL+   + +V    C++   ++G+ I + + CAG               PL+   D  + 
Sbjct: 8   KLQQAALPIVSEADCKK---SWGSKITDVMTCAGA--SGVDSCMGDSGGPLVCQKDGVWT 62
Query: 321 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 350
           + G+VS+G        PGVY+RVT  + W+
Sbjct: 63  LAGIVSWGSGVCSTSTPGVYSRVTALMPWV 92

>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex Length = 317

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 22/187 (11%)
Query: 94  NNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVL 153
           +++C      S KR            P +  + ++++   + GK    CGG +I + +VL
Sbjct: 85  HDQCACGVLTSEKRA-----------PDLQDLPWQVKLTNSEGKD--FCGGVIIRENFVL 131
Query: 154 TAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRL 213
           T A C         + Y        L        I+I    +H +Y +    ND++L  L
Sbjct: 132 TTAKCSLLHRNITVKTYFNRTSQDPL-------MIKITHVHVHMRYDADAGENDLSLLEL 184
Query: 214 REDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNP 273
                      P+C P        L  R    ++GW        L   L    +++V+  
Sbjct: 185 EWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARN--GTDLGNSLTTRPVTLVEGE 242
Query: 274 KCRQIFS 280
           +C Q+ +
Sbjct: 243 ECGQVLN 249

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	355
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	1e-115
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	1e-105
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	1e-105
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	6e-93
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	1e-91
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	8e-90
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	6e-89
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	7e-89
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	1e-88
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	2e-87
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	3e-87
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	5e-87
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	7e-87
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	2e-86
1aut_C	250	Activated protein C; serine proteinase, plasma cal	8e-86
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	1e-85
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	2e-85
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	3e-85
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	3e-85
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	3e-85
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	9e-85
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	1e-84
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	1e-84
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	2e-84
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	5e-84
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	9e-84
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	2e-83
1gpz_A	399	Complement C1R component; hydrolase, activation, i	5e-83
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	8e-83
1md8_A	329	C1R complement serine protease; innate immunity, a	9e-83
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	2e-82
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	3e-82
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	3e-82
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	4e-82
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	4e-82
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	7e-82
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	1e-81
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	2e-81
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	3e-81
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	3e-81
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	1e-80
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	5e-80
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	2e-79
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	8e-79
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	1e-78
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	1e-78
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	2e-78
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	7e-78
1elv_A	333	Complement C1S component; trypsin-like serin prote	2e-77
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	3e-77
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	3e-77
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	4e-77
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	4e-77
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	6e-77
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	6e-77
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	2e-76
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	2e-76
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	4e-76
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	6e-76
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	7e-76
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	8e-76
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	1e-75
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	2e-75
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	6e-75
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	1e-74
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	1e-74
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	2e-74
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	3e-74
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	4e-74
1a7s_A	225	Heparin binding protein; serine protease homolog,	6e-74
2xrc_A	565	Human complement factor I; immune system, hydrolas	7e-74
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	7e-74
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	2e-73
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	9e-73
2aiq_A	231	Protein C activator; snake venom serine proteinase	1e-72
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	3e-72
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	3e-72
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	4e-72
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	9e-72
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	2e-71
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	1e-70
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	7e-70
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	2e-69
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	3e-69
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	7e-69
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	4e-68
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	4e-64
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	2e-59
3hrz_D	741	Complement factor B; serine protease, glycosilated	3e-55
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	8e-45
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	3e-37
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	4e-36
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	4e-20
2ikd_A	66	Prophenoloxidase activating proteinase-2; beta-she	2e-18
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	6e-18
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	2e-13
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	1e-07
2ike_A	54	Prophenoloxidase activating proteinase-2; beta-she	5e-07
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	5e-06
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	5e-04

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score =  339 bits (870), Expect = e-115
 Identities = 106/371 (28%), Positives = 167/371 (45%), Gaps = 54/371 (14%)

Query: 10  CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAV-----QYVKNSHCGLEGRLPKVCCPQ 64
           C+TP  + G C+    CR + + L   +   + V      Y++ + CG    +   CCP 
Sbjct: 32  CTTPDGDQGQCMPFSSCRTIEERLTEAQKAGQKVPADYASYLQKALCGEFNGVRHFCCPS 91

Query: 65  HTLTNDQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAA 124
             + ++    +             L   +N +CG      S+R+  G   +    PWMA 
Sbjct: 92  ANIQHNSKVMS-------------LFKDENFDCGNF---LSQRVSNGYEVKLSSRPWMAL 135

Query: 125 IGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSS 184
           + +     +  G+  ++CGGA+I++RY+LTAAHCV      + + Y + +G   +     
Sbjct: 136 LRY-----QQFGESRFLCGGAMISERYILTAAHCV---HGLQNDLYEIRLGEHRISTEED 187

Query: 185 G-------------VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYD 231
                         V++ IE+ +IHE+Y +   ++DIAL +L    P    I+PICLP  
Sbjct: 188 CRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPIT 247

Query: 232 TNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENIL 291
             L+ +  +  T FV GWG+T   G  S  L    + +     C Q    Y   +  + L
Sbjct: 248 DELKEKAEQISTYFVTGWGTT-ENGSSSDVLLQANVPLQPRSACSQ---AYRRAVPLSQL 303

Query: 292 CAGVLSGGKDSCGGDSGGPLMYPL------DTKYYIIGVVSYG-KKCAEVGFPGVYTRVT 344
           C G     +DSC GDSGGPL  P         K    G+VS G   C ++  PG+YT V 
Sbjct: 304 CVG-GGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVG 362

Query: 345 NYIQWIADNIS 355
            Y+QWI D ++
Sbjct: 363 EYVQWITDTMA 373

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score =  310 bits (795), Expect = e-105
 Identities = 88/283 (31%), Positives = 134/283 (47%), Gaps = 27/283 (9%)

Query: 88  KLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALI 147
           + P    N+CG      + +I+ G  +   ++PW A IG+    + ++   ++ CGG+LI
Sbjct: 5   RRPELLPNDCGYQ--VEADKILNGDDTVPEEFPWTAMIGY----KNSSNFEQFACGGSLI 58

Query: 148 TKRYVLTAAHCV-SPDTTGEYEPYIVHVGSIDLEDT------------SSGVSIEIERPI 194
             RY++TAAHCV             V +G  +                   + + IE  I
Sbjct: 59  NNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETI 118

Query: 195 IHEQYTSARK--LNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST 252
            H  Y    K   +DIAL RL      ++ I+P+CLP       E+   +   V GWG T
Sbjct: 119 QHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQP---NEEVQVGQRLTVVGWGRT 175

Query: 253 VFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 312
              G  S   + + + VV   +C + F   G  +  + LCAG     KDSCGGDSGGPL+
Sbjct: 176 E-TGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGG-EKAKDSCGGDSGGPLL 233

Query: 313 YP-LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
               + ++++ G+VS+G  C   G+PG+YT+V  Y  WI  NI
Sbjct: 234 AERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNI 276

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score =  314 bits (806), Expect = e-105
 Identities = 94/362 (25%), Positives = 151/362 (41%), Gaps = 32/362 (8%)

Query: 10  CSTPRNEIGTCISIRQCRYLYDILN--NERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTL 67
            +        CI   +C  + + +      N      +    +         VCC     
Sbjct: 38  GTGADQGKKVCIVYHRCDGVTNTVTPEEVINTTGEGIFDIRENANECESYLDVCCGL--- 94

Query: 68  TNDQPTTTTRRPNNRNGAFTKLPSPDNNECGV-NAFNSSKRIVGGT-PSERGQWPWMAAI 125
             +     T  P         +P    + CG+ N      +I G T  +E G++PWM A+
Sbjct: 95  -PEGGVLPTPSPTPPV-----VPVLKPSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAV 148

Query: 126 GFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL---EDT 182
             K      +G+ + +CGG+LI    VLT AHCV+   +   +   +  G  D    ++ 
Sbjct: 149 -LKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQS-NLDAIKIRAGEWDTLTEKER 206

Query: 183 SSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERK 242
                 +I + IIH  +     +ND+AL  L      +D I  ICLP     +S++F+  
Sbjct: 207 LPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLP----QQSQIFDST 262

Query: 243 TPFVAGWGSTVF--RGPLSPKLRHVQISVVDNPKCRQIFSN----YGATINENILCAGVL 296
             F +GWG   F  R   S  L+ +Q+  VD  KC+    N        +++  +CAG  
Sbjct: 263 ECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGE 322

Query: 297 SGGKDSCGGDSGGPLMYPL---DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 353
             GKD+C GD G PL  P     ++Y  +G+V++G  C +   PGVY  V ++  WI   
Sbjct: 323 -QGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQE 381

Query: 354 IS 355
           + 
Sbjct: 382 MQ 383

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score =  276 bits (708), Expect = 6e-93
 Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 17/249 (6%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +             E  CGG ++++ Y+LTAAHC+        
Sbjct: 1   IVGGQECKDGECPWQALL------INEEN--EGFCGGTILSEFYILTAAHCLYQAKR--- 49

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
             + V VG  + E    G    E+E  I H ++T      DIA+ RL+        + P 
Sbjct: 50  --FKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP      S L  +KT  V+G+G T  +G  S +L+ +++  VD   C+    +    I
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKL---SSSFII 164

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N+ CAG  +  +D+C GDSGGP +      Y++ G+VS+G+ CA  G  G+YT+VT +
Sbjct: 165 TQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224

Query: 347 IQWIADNIS 355
           ++WI  ++ 
Sbjct: 225 LKWIDRSMK 233

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score =  273 bits (700), Expect = 1e-91
 Identities = 79/249 (31%), Positives = 130/249 (52%), Gaps = 17/249 (6%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG+ ++ G WPW+  +         + +   +CG +L++  ++++AAHCV        
Sbjct: 1   IVGGSDAKEGAWPWVVGL-------YYDDRL--LCGASLVSSDWLVSAAHCVYGRNLEPS 51

Query: 168 EPYIVHVGSIDLEDTSS--GVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
           + +   +G     + +S   V   I+  +I+  Y   RK NDIA+  L      +D IQP
Sbjct: 52  K-WTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQP 110

Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
           I LP +          +   +AGWG+ V++G  +  L+   + ++ N +C+Q        
Sbjct: 111 ISLPEEN---QVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQM--PEYN 165

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           I EN++CAG   GG DSC GDSGGPLM   + ++++ GV S+G +CA    PGVY RV+ 
Sbjct: 166 ITENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSR 225

Query: 346 YIQWIADNI 354
           + +WI   +
Sbjct: 226 FTEWIQSFL 234

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score =  269 bits (689), Expect = 8e-90
 Identities = 86/251 (34%), Positives = 121/251 (48%), Gaps = 14/251 (5%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG    +G+ PW   +         NG    +CGG LI   +V++AAHC   D    +
Sbjct: 1   IVGGKVCPKGECPWQVLL-------LVNGAQ--LCGGTLINTIWVVSAAHCF--DKIKNW 49

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
              I  +G  DL +      S  + + II   Y      +DIAL RL +   L+D + P+
Sbjct: 50  RNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPL 109

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA-- 284
           CLP  T     L   +   V+GWG  + RG  + +L  + +  +    C Q     G   
Sbjct: 110 CLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSP 169

Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
            I E + CAG   G KDSC GDSGGP        +Y+ G+VS+G+ CA VG  GVYTRV+
Sbjct: 170 NITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVS 229

Query: 345 NYIQWIADNIS 355
            YI+W+   + 
Sbjct: 230 QYIEWLQKLMR 240

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score =  266 bits (682), Expect = 6e-89
 Identities = 81/250 (32%), Positives = 135/250 (54%), Gaps = 16/250 (6%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S  G+WPW  ++    + +    +   +CGG+LI  ++VLTAAHC       + 
Sbjct: 1   IVGGTESSWGEWPWQVSL----QVKLTAQRH--LCGGSLIGHQWVLTAAHCFDGLPLQDV 54

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
             + ++ G ++L D +      +I+  IIH+ Y  +   +DIAL +L+     ++  +PI
Sbjct: 55  --WRIYSGILELSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPI 112

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
            LP     + +     T  +V GWG +  +G +   L+ V I +V N +C++ +      
Sbjct: 113 SLPS----KGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRY--QDYK 166

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           I + ++CAG   GGKD+C GDSGGPL+   +  + ++G+ S+G+ CA    PGVYT+V  
Sbjct: 167 ITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAE 226

Query: 346 YIQWIADNIS 355
           Y+ WI +   
Sbjct: 227 YMDWILEKTQ 236

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score =  265 bits (681), Expect = 7e-89
 Identities = 74/250 (29%), Positives = 129/250 (51%), Gaps = 21/250 (8%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  ++ GQ+PW   +                CGG+++ +++++TAAHCV        
Sbjct: 1   VVGGEDAKPGQFPWQVVL-------NGKVDA--FCGGSIVNEKWIVTAAHCVETGVK--- 48

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL--NDIALFRLREDAPLSDLIQ 224
               V  G  ++E+T        + R I H  + +A     +DIAL  L E   L+  + 
Sbjct: 49  --ITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVT 106

Query: 225 PICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
           PIC+  D    +   +  + +V+GWG    +G  +  L+++++ +VD   C +   +   
Sbjct: 107 PICIA-DKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLR---STKF 162

Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
           TI  N+ CAG   GG+DSC GDSGGP +  ++   ++ G++S+G++CA  G  G+YT+V+
Sbjct: 163 TITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVS 222

Query: 345 NYIQWIADNI 354
            Y+ WI +  
Sbjct: 223 RYVNWIKEKT 232

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score =  265 bits (680), Expect = 1e-88
 Identities = 82/250 (32%), Positives = 127/250 (50%), Gaps = 16/250 (6%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S RG+WPW   +         +     +CGG++I  +++LTAAHC     + + 
Sbjct: 1   IVGGTASVRGEWPWQVTL------HTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKI 54

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V+ G ++  +         ++  IIH+QY  A    DIAL +L      +D  +PI
Sbjct: 55  --LRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPI 112

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
            LP     + E     T  +V GWG    R  +   L+  +I +V N +C++ +   G  
Sbjct: 113 SLPS----KGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY--RGHK 166

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           I   ++CAG   GGKD+C GDSGGPL    +  ++++G+ S+G+ CA+   PGVYT V  
Sbjct: 167 ITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVE 226

Query: 346 YIQWIADNIS 355
           Y+ WI +   
Sbjct: 227 YVDWILEKTQ 236

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score =  264 bits (676), Expect = 2e-87
 Identities = 83/288 (28%), Positives = 121/288 (42%), Gaps = 27/288 (9%)

Query: 85  AFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGG 144
            F K    D  E  +       RIV G+ +E G  PW   +             E +CG 
Sbjct: 8   LFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVML-------FRKSPQELLCGA 60

Query: 145 ALITKRYVLTAAHCVSPDTTGEYEP---YIVHVGSIDLEDTSSG--VSIEIERPIIHEQY 199
           +LI+ R+VLTAAHC+      +       +V +G                +E+  IH +Y
Sbjct: 61  SLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRY 120

Query: 200 TSARKL-NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST------ 252
                L  DIAL +L++    SD I P+CLP      S L       V GWG+       
Sbjct: 121 NWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA 180

Query: 253 VFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS---GGKDSCGGDSGG 309
                    L+ V + +V+ P C+    +    I +N+ CAG         D+C GDSGG
Sbjct: 181 NVGKGQPSVLQVVNLPIVERPVCKD---STRIRITDNMFCAGYKPDEGKRGDACEGDSGG 237

Query: 310 PLM--YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           P +   P + ++Y +G+VS+G+ C   G  G YT V    +WI   I 
Sbjct: 238 PFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score =  262 bits (672), Expect = 3e-87
 Identities = 94/265 (35%), Positives = 130/265 (49%), Gaps = 23/265 (8%)

Query: 97  CGVNAF--NSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
           CG   F  N S R+VGG  +    WPW  ++     +   +      CGG LIT  +VLT
Sbjct: 1   CGAPIFQPNLSARVVGGEDAIPHSWPWQISL-----QYLRDNTWRHTCGGTLITPNHVLT 55

Query: 155 AAHCVSPDTTGEYEPYIVHVGSIDLEDTSSG--VSIEIERPIIHEQYTSARKLNDIALFR 212
           AAHC+S   T     Y V +G  +LE       + + ++   +HE++ S    NDIAL +
Sbjct: 56  AAHCISNTLT-----YRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIK 110

Query: 213 LREDAPLSDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVD 271
           L E   L D IQ  CLP +      L  +  P FV GWG     GP++ +L+     VVD
Sbjct: 111 LAETVELGDTIQVACLPSE----GSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVD 166

Query: 272 NPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVS--YGK 329
              C Q    +G T+ E ++CAG   G   +C GDSGGPL    D ++ + G+VS   G 
Sbjct: 167 YATCSQRDW-WGTTVKETMVCAG-GDGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGL 224

Query: 330 KCAEVGFPGVYTRVTNYIQWIADNI 354
            C     P V+TRV+ YI WI   +
Sbjct: 225 SCNTFKKPTVFTRVSAYIDWINQKL 249

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score =  260 bits (668), Expect = 7e-87
 Identities = 79/247 (31%), Positives = 117/247 (47%), Gaps = 13/247 (5%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT +  G++P+  +      +    G     CG ++  + Y +TA HCV  D     
Sbjct: 1   IVGGTDATLGEFPYQLSF-----QETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENP 55

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               +  G +D+         I + + I+HE +      NDI+L +L      +D + PI
Sbjct: 56  SGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPI 115

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP                V GWG+T   G     L+ V + +V +  CR  +      I
Sbjct: 116 ALPEQ----GHTATGDV-IVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADY--GADEI 168

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            ++++CAGV  GGKDSC GDSGGPL        Y+ G+VS+G  CA  G+PGVYT V+ +
Sbjct: 169 LDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYH 228

Query: 347 IQWIADN 353
           + WI  N
Sbjct: 229 VDWIKAN 235

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score =  260 bits (666), Expect = 2e-86
 Identities = 82/253 (32%), Positives = 123/253 (48%), Gaps = 20/253 (7%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT ++ G+WPW  ++        A G+    CG +LI+  ++++AAHC   D    Y
Sbjct: 1   VVGGTDADEGEWPWQVSL-------HALGQGHI-CGASLISPNWLVSAAHCYIDDRGFRY 52

Query: 168 EP---YIVHVGSIDLEDTSS--GVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
                +   +G  D    S+       ++R I H  +       DIAL  L + A  S +
Sbjct: 53  SDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSM 112

Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY 282
           ++PI LP  +         K  +V GWG T + G  +  L+  +I V++   C  +    
Sbjct: 113 VRPISLPDAS---HVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENL---L 166

Query: 283 GATINENILCAGVLSGGKDSCGGDSGGPLMYP-LDTKYYIIGVVSYGKKCAEVGFPGVYT 341
              I   ++C G LSGG DSC GDSGGPL     D + +  GVVS+G  CA+   PGVYT
Sbjct: 167 PQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYT 226

Query: 342 RVTNYIQWIADNI 354
           R+  +  WI +N 
Sbjct: 227 RLPLFRDWIKENT 239

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score =  258 bits (662), Expect = 8e-86
 Identities = 79/255 (30%), Positives = 126/255 (49%), Gaps = 23/255 (9%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           ++ G  + RG  PW   +        +    +  CG  LI   +VLTAAHC+        
Sbjct: 1   LIDGKMTRRGDSPWQVVL------LDSKK--KLACGAVLIHPSWVLTAAHCMDESKK--- 49

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
              +V +G  DL       + ++I+   +H  Y+ +   NDIAL  L + A LS  I PI
Sbjct: 50  --LLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPI 107

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPK-----LRHVQISVVDNPKCRQIFS 280
           CLP       EL +      V GWG    R   + +     L  ++I VV + +C ++  
Sbjct: 108 CLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEV-- 165

Query: 281 NYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVY 340
                ++EN+LCAG+L   +D+C GDSGGP++      ++++G+VS+G+ C  +   GVY
Sbjct: 166 -MSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVY 224

Query: 341 TRVTNYIQWIADNIS 355
           T+V+ Y+ WI  +I 
Sbjct: 225 TKVSRYLDWIHGHIR 239

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score =  257 bits (659), Expect = 1e-85
 Identities = 81/249 (32%), Positives = 119/249 (47%), Gaps = 21/249 (8%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT  E G+WPW A++       + +G     CG  LI   ++++AAHC +       
Sbjct: 1   IVGGTEVEEGEWPWQASL-------QWDGSH--RCGATLINATWLVSAAHCFTTYKNPAR 51

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
             +    G        S +   + R I+HE+Y       DI+L  L    P ++ +  +C
Sbjct: 52  --WTASFGV---TIKPSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVC 106

Query: 228 LPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           LP      S  F+     FV G+G+    G     LR  Q++++D   C +  + Y   I
Sbjct: 107 LPD----ASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQA-YNDAI 161

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYP-LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
              +LCAG L G  D+C GDSGGPL+       +Y+ G+VS+G +CA+   PGVYTRVT 
Sbjct: 162 TPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTA 221

Query: 346 YIQWIADNI 354
              WI    
Sbjct: 222 LRDWITSKT 230

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score =  258 bits (660), Expect = 2e-85
 Identities = 78/265 (29%), Positives = 115/265 (43%), Gaps = 27/265 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IV G+ +E G  PW   +             E +CG +LI+ R+VLTAAHC+      + 
Sbjct: 1   IVEGSDAEIGMSPWQVML-------FRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53

Query: 168 EP---YIVHVGSIDLEDTSSG--VSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSD 221
                 +V +G                +E+  IH +Y     L  DIAL +L++    SD
Sbjct: 54  FTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSD 113

Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGST------VFRGPLSPKLRHVQISVVDNPKC 275
            I P+CLP      S L       V GWG+                L+ V + +V+ P C
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVC 173

Query: 276 RQIFSNYGATINENILCAGVL---SGGKDSCGGDSGGPLM--YPLDTKYYIIGVVSYGKK 330
           +    +    I +N+ CAG         D+C GDSGGP +   P + ++Y +G+VS+G+ 
Sbjct: 174 KD---STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230

Query: 331 CAEVGFPGVYTRVTNYIQWIADNIS 355
           C   G  G YT V    +WI   I 
Sbjct: 231 CDRDGKYGFYTHVFRLKKWIQKVID 255

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score =  257 bits (659), Expect = 3e-85
 Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 28/261 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I  G P+++G  PW+A +         NG+P   CGG+L+   +++TAAHC+      + 
Sbjct: 1   IFNGRPAQKGTTPWIAML------SHLNGQP--FCGGSLLGSSWIVTAAHCLHQSLDPKD 52

Query: 168 EP-----------YIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLRE 215
                        + + +G      +      + ++   +H QY      ND+AL  L E
Sbjct: 53  PTLRDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLE 112

Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKC 275
              L+  + PICLP          E     V+GWG   F       L  ++I +VD+  C
Sbjct: 113 SPVLNAFVMPICLP-----EGPQQEGAMVIVSGWGKQ-FLQRFPETLMEIEIPIVDHSTC 166

Query: 276 RQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM--YPLDTKYYIIGVVSYGKKCAE 333
           ++ ++     +  +++CAG   GGKD+C GDSGGP++       ++Y++G VS+G  C +
Sbjct: 167 QKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGK 226

Query: 334 VGFPGVYTRVTNYIQWIADNI 354
               GVY+ + +   WI    
Sbjct: 227 KDRYGVYSYIHHNKDWIQRVT 247

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score =  263 bits (673), Expect = 3e-85
 Identities = 90/371 (24%), Positives = 134/371 (36%), Gaps = 39/371 (10%)

Query: 10  CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCG------LEGRLPKVCCP 63
           C  P            C       +    +    +       G       +  +      
Sbjct: 64  CRNP----DGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATAT 119

Query: 64  QHTLTNDQPTTTTRRPNN--RNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPW 121
               T   P T      +      F K    D  E  +       RIV G+ +E G  PW
Sbjct: 120 SEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPW 179

Query: 122 MAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEP---YIVHVGSID 178
              +             E +CG +LI+ R+VLTAAHC+      +       +V +G   
Sbjct: 180 QVML-------FRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHS 232

Query: 179 LEDTSSG--VSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSDLIQPICLPYDTNLR 235
                        +E+  IH +Y     L  DIAL +L++    SD I P+CLP      
Sbjct: 233 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAA 292

Query: 236 SELFERKTPFVAGWGST------VFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINEN 289
           S L       V GWG+                L+ V + +V+ P C+    +    I +N
Sbjct: 293 SLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKD---STRIRITDN 349

Query: 290 ILCAGVLS---GGKDSCGGDSGGPLM--YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
           + CAG         D+C GDSGGP +   P + ++Y +G+VS+G+ C   G  G YT V 
Sbjct: 350 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVF 409

Query: 345 NYIQWIADNIS 355
              +WI   I 
Sbjct: 410 RLKKWIQKVID 420

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score =  256 bits (657), Expect = 3e-85
 Identities = 75/253 (29%), Positives = 111/253 (43%), Gaps = 20/253 (7%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           ++GGT +  G++PW  +       +R +G     CG +L++    L+A+HCV        
Sbjct: 1   VIGGTNASPGEFPWQLSQ------QRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNI 54

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTS--ARKLNDIALFRLREDAPLSDLIQP 225
               V  G     DTS   +  ++   +HE Y +  A   NDIA+  L     L   IQ 
Sbjct: 55  R---VIAGLWQQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQA 111

Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA- 284
             LP +    +  +   T  ++GWG T     L   L+   I V+   +C       G  
Sbjct: 112 AVLPANN---NNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGA 168

Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVS----YGKKCAEVGFPGVY 340
            I +N +C    +G   +C GDSGGPL  P D    ++GV S     G       +P VY
Sbjct: 169 NIWDNHICVQDPAGNTGACNGDSGGPLNCP-DGGTRVVGVTSWVVSSGLGACLPDYPSVY 227

Query: 341 TRVTNYIQWIADN 353
           TRV+ Y+ WI DN
Sbjct: 228 TRVSAYLGWIGDN 240

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score =  255 bits (654), Expect = 9e-85
 Identities = 88/255 (34%), Positives = 120/255 (47%), Gaps = 22/255 (8%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I GG  ++ G +PW   I                  GAL+   +VLTAAH V        
Sbjct: 1   IYGGQKAKPGDFPWQVLI-----------LGGTTAAGALLYDNWVLTAAHAVYEQKHDAS 49

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSDLIQPI 226
               + +G++             E   IHE YT      NDIAL +L     ++  I PI
Sbjct: 50  A-LDIRMGTLKRLSPH-YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPI 107

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN---YG 283
           CLP      S +        +GWG T  RG L+  L +V I +VD+ KC   +       
Sbjct: 108 CLP-RKEAESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPR 165

Query: 284 ATINENILCAGVLSGGKDSCGGDSGGPLM--YPLDTKYYIIGVVSYGKK-CAEVGFPGVY 340
            ++  N+LCAG+ SGGKDSC GDSGG L+       ++++ G+VS+G   C E G  GVY
Sbjct: 166 GSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVY 225

Query: 341 TRVTNYIQWIADNIS 355
           T+V NYI WI + IS
Sbjct: 226 TKVINYIPWIENIIS 240

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score =  260 bits (666), Expect = 1e-84
 Identities = 85/276 (30%), Positives = 132/276 (47%), Gaps = 28/276 (10%)

Query: 91  SPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKR 150
           +    +CG        RIVGG  +  G+WPW  ++       R +G    +CGG+L++  
Sbjct: 102 AAICQDCGRRKLPVD-RIVGGRDTSLGRWPWQVSL-------RYDGAH--LCGGSLLSGD 151

Query: 151 YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL----- 205
           +VLTAAHC  P+       + V  G++    +  G+ + ++  + H  Y   R       
Sbjct: 152 WVLTAAHCF-PERNRVLSRWRVFAGAVAQ-ASPHGLQLGVQAVVYHGGYLPFRDPNSEEN 209

Query: 206 -NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLR 263
            NDIAL  L    PL++ IQP+CLP       +         V GWG+T + G  +  L+
Sbjct: 210 SNDIALVHLSSPLPLTEYIQPVCLPA----AGQALVDGKICTVTGWGNTQYYGQQAGVLQ 265

Query: 264 HVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP----LDTKY 319
             ++ ++ N  C      YG  I   + CAG   GG D+C GDSGGP +         ++
Sbjct: 266 EARVPIISNDVCNGADF-YGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRW 324

Query: 320 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
            + G+VS+G  CA    PGVYT+V+++ +WI   I 
Sbjct: 325 RLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIK 360

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score =  267 bits (684), Expect = 1e-84
 Identities = 88/298 (29%), Positives = 141/298 (47%), Gaps = 19/298 (6%)

Query: 62  CPQHTLTNDQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSK---RIVGGTPSERGQ 118
           C +         ++   P         +       C ++   ++K   RIVGGT S RG+
Sbjct: 339 CNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKPRIVGGTASVRGE 398

Query: 119 WPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSID 178
           WPW   +         +     +CGG++I  +++LTAAHC     + +     V+ G ++
Sbjct: 399 WPWQVTL------HTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKI--LRVYSGILN 450

Query: 179 L-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSE 237
             E         ++  IIH+QY  A    DIAL +L      +D  +PICLP     + +
Sbjct: 451 QSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPS----KGD 506

Query: 238 LFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVL 296
                T  +V GWG    R  +   L+  +I +V N +C++ +   G  I   ++CAG  
Sbjct: 507 RNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY--RGHKITHKMICAGYR 564

Query: 297 SGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
            GGKD+C GDSGGPL    +  ++++G+ S+G+ CA+   PGVYT V  Y+ WI +  
Sbjct: 565 EGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 622

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score =  260 bits (666), Expect = 2e-84
 Identities = 91/267 (34%), Positives = 127/267 (47%), Gaps = 22/267 (8%)

Query: 96  ECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTA 155
            CG++A  +  +I GG  ++ G +PW   I                  GAL+   +VLTA
Sbjct: 150 VCGLSARTTGGQIYGGQKAKPGDFPWQVLI-----------LGGTTAAGALLYDNWVLTA 198

Query: 156 AHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL-NDIALFRLR 214
           AH V            + +G++             E   IHE YT      NDIAL +L 
Sbjct: 199 AHAVYEQKHDASA-LDIRMGTLKRLS-PHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLN 256

Query: 215 EDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPK 274
               ++  I PICLP      S +        +GWG T  RG L+  L +V I +VD+ K
Sbjct: 257 NKVVINSNITPICLP-RKEAESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQK 314

Query: 275 CRQIFSN---YGATINENILCAGVLSGGKDSCGGDSGGPLM--YPLDTKYYIIGVVSYGK 329
           C   +        ++  N+LCAG+ SGGKDSC GDSGG L+       ++++ G+VS+G 
Sbjct: 315 CTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGS 374

Query: 330 K-CAEVGFPGVYTRVTNYIQWIADNIS 355
             C E G  GVYT+V NYI WI + IS
Sbjct: 375 MNCGEAGQYGVYTKVINYIPWIENIIS 401

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score =  255 bits (654), Expect = 5e-84
 Identities = 79/258 (30%), Positives = 121/258 (46%), Gaps = 19/258 (7%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +  G WPWM ++               +CGG+L+  +++LTAAHC         
Sbjct: 1   IIGGQDAAHGAWPWMVSLQIFTYHNNRRYH---VCGGSLLNSQWLLTAAHCFRIKKKVTD 57

Query: 168 EPYIVHVGSIDLEDTSSG------VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
             + +  G+ ++E  ++           +E+ IIHE+Y+++ + NDIAL ++        
Sbjct: 58  --WRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGH 115

Query: 222 LIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPL-SPKLRHVQISVVDNPKCRQIF 279
            I P CLP     R+         +VAGWG         SP L+  ++ ++D   C    
Sbjct: 116 FIGPGCLP---QFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTR 172

Query: 280 SNYGATINENILCAGVLSGGKDSCGGDSGGPLMY--PLDTKYYIIGVVSYGKKCAEVGFP 337
             Y   I    +CAG   G  D+C GDSGGPLM     +  Y ++G+ S+G  CA    P
Sbjct: 173 W-YNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRP 231

Query: 338 GVYTRVTNYIQWIADNIS 355
           GVYT   +Y+ WIA  I 
Sbjct: 232 GVYTSTWSYLNWIASKIG 249

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score =  252 bits (646), Expect = 9e-84
 Identities = 71/249 (28%), Positives = 110/249 (44%), Gaps = 28/249 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT + +G++P+M  +                CGGAL  +  VLTAAHCV    +G  
Sbjct: 1   VVGGTRAAQGEFPFMVRLSMG-------------CGGALYAQDIVLTAAHCV--SGSGNN 45

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
                  G +DL+  SS V +   + +    +T      D AL +L        + QP  
Sbjct: 46  TSITATGGVVDLQS-SSAVKVRSTKVLQAPGFTKETYGKDWALIKLA-----QPINQPTL 99

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
                   +  + + T  VAGWG+    G     L    +  V +  CR   S+    + 
Sbjct: 100 KIAT----TTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRS--SSSFILVA 153

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
             ++CAG  +  +D+C GDSGGP+       ++  +G+VS+G+ CA  G  GVYT V+ +
Sbjct: 154 NEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTF 213

Query: 347 IQWIADNIS 355
              IA    
Sbjct: 214 ASAIASAAR 222

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score =  252 bits (645), Expect = 2e-83
 Identities = 72/257 (28%), Positives = 112/257 (43%), Gaps = 29/257 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  ++ G +PW             +G+     GGAL+  R++LTAAH + P      
Sbjct: 1   IIGGQKAKMGNFPWQVFT-------NIHGR----GGGALLGDRWILTAAHTLYPKEHEAQ 49

Query: 168 EP--YIVHVGSIDLEDTSSGVSIEIERPIIHEQY---TSARKLNDIALFRLREDAPLSDL 222
                 V +G  ++E+     +  I R  +H  Y    S     DIAL  L     L   
Sbjct: 50  SNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPN 109

Query: 223 IQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIF-- 279
           + PICLP         ++     +V+G+G       ++  LR V++ V +   C      
Sbjct: 110 LLPICLP----DNDTFYDLGLMGYVSGFGVM--EEKIAHDLRFVRLPVANPQACENWLRG 163

Query: 280 SNYGATINENILCAGVLSGGKDSCGGDSGGPLM--YPLDTKYYIIGVVSYGKKCAEVGFP 337
            N     ++N+ CAG  S  +D+C GDSGG      P   ++   G+VS+G  C+     
Sbjct: 164 KNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--Y 221

Query: 338 GVYTRVTNYIQWIADNI 354
           G YT+V NY+ WI   +
Sbjct: 222 GFYTKVLNYVDWIKKEM 238

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score =  256 bits (656), Expect = 5e-83
 Identities = 87/361 (24%), Positives = 138/361 (38%), Gaps = 46/361 (12%)

Query: 15  NEIGTCISIRQCRYLYDILN-----NERNNPRAVQYVKNSHCG-----LEGRLPKVCCPQ 64
             +  C  I+ C    ++ N              +     +C      ++ R       Q
Sbjct: 60  RAMPRC-KIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQ 118

Query: 65  HTLTNDQPTTTTRRPNNRNGAFTKLPSPDNNECG--VNAFNSSKRIVGGTPSERGQWPWM 122
              T           N + G       P    CG  VN     ++I+GG  ++ G +PW 
Sbjct: 119 GVYTCTAQGIWK---NEQKGEKIPRCLPV---CGKPVNPVEQRQQIIGGQKAKMGNFPWQ 172

Query: 123 AAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEP--YIVHVGSIDLE 180
                       +G+     GGAL+  R++LTAAH + P            V +G  ++E
Sbjct: 173 VFT-------NIHGR----GGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVE 221

Query: 181 DTSSGVSIEIERPIIHEQY---TSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSE 237
           +     +  I R  +H  Y    S     DIAL  L     L   + PICLP   +  + 
Sbjct: 222 ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLP---DNDTF 278

Query: 238 LFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIF--SNYGATINENILCAGV 295
                  +V+G+G       ++  LR V++ V +   C       N     ++N+ CAG 
Sbjct: 279 YDLGLMGYVSGFGVM--EEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGH 336

Query: 296 LSGGKDSCGGDSGGPLM--YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 353
            S  +D+C GDSGG      P   ++   G+VS+G  C+     G YT+V NY+ WI   
Sbjct: 337 PSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKE 394

Query: 354 I 354
           +
Sbjct: 395 M 395

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score =  250 bits (642), Expect = 8e-83
 Identities = 85/265 (32%), Positives = 122/265 (46%), Gaps = 27/265 (10%)

Query: 96  ECGVNAFNSSK---RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYV 152
           +CG       K   R+VGG  +    WPW  ++      R   G     CGG LI+  +V
Sbjct: 3   DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSL------RTRFGMH--FCGGTLISPEWV 54

Query: 153 LTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGV-SIEIERPIIHEQYTSARKLNDIALF 211
           LTAAHC+          Y V +G+    +    V  IE+ R  +           DIAL 
Sbjct: 55  LTAAHCLEKSPRPSS--YKVILGAHQEVNLEPHVQEIEVSRLFLEPTR------KDIALL 106

Query: 212 RLREDAPLSDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVV 270
           +L   A ++D + P CLP      + +   +T  F+ GWG T      +  L+  Q+ V+
Sbjct: 107 KLSSPAVITDKVIPACLPS----PNYVVADRTECFITGWGETQ-GTFGAGLLKEAQLPVI 161

Query: 271 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK 330
           +N  C +        +    LCAG L+GG DSC GD+GGPL+     KY + GV S+G  
Sbjct: 162 ENKVCNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLG 220

Query: 331 CAEVGFPGVYTRVTNYIQWIADNIS 355
           CA    PGVY RV+ ++ WI   + 
Sbjct: 221 CARPNKPGVYVRVSRFVTWIEGVMR 245

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score =  253 bits (649), Expect = 9e-83
 Identities = 76/269 (28%), Positives = 117/269 (43%), Gaps = 29/269 (10%)

Query: 97  CG--VNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
           CG  VN     +RI+GG  ++ G +PW             +G+     GGAL+  R++LT
Sbjct: 77  CGKPVNPVEQRQRIIGGQKAKMGNFPWQVFT-------NIHGR----GGGALLGDRWILT 125

Query: 155 AAHCVSPDTTGEYEP--YIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL---NDIA 209
           AAH + P            V +G  ++E+     +  I R  +H  Y          DIA
Sbjct: 126 AAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIA 185

Query: 210 LFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISV 269
           L  L     L   + PICLP   +  +        +V+G+G       ++  LR V++ V
Sbjct: 186 LLELENSVTLGPNLLPICLP---DNDTFYDLGLMGYVSGFGVM--EEKIAHDLRFVRLPV 240

Query: 270 VDNPKCRQIF--SNYGATINENILCAGVLSGGKDSCGGDSGGPLM--YPLDTKYYIIGVV 325
            +   C       N     ++N+ CAG  S  +D+C GDSGG      P   ++   G+V
Sbjct: 241 ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIV 300

Query: 326 SYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
           S+G  C+     G YT+V NY+ WI   +
Sbjct: 301 SWGIGCSRG--YGFYTKVLNYVDWIKKEM 327

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score =  249 bits (639), Expect = 2e-82
 Identities = 84/256 (32%), Positives = 130/256 (50%), Gaps = 20/256 (7%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +     PW AAI     RR   G   ++CGG+LI+  +V++A HC       + 
Sbjct: 1   IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLISPCWVISATHCF--IDYPKK 54

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTS--ARKLNDIALFRLRED----APLS 220
           E YIV++G   L   + G +  E+E  I+H+ Y++      NDIAL ++R      A  S
Sbjct: 55  EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPS 114

Query: 221 DLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQI 278
             IQ I LP          +  T   + G+G       L P+ L+   + ++ + +C+Q 
Sbjct: 115 RTIQTISLP----SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQP 170

Query: 279 FSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
              YG+ +   +LCA       DSC GDSGGPL+  L  +  + G+VS+G+ CA    PG
Sbjct: 171 HY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229

Query: 339 VYTRVTNYIQWIADNI 354
           VYTRV++++ WI  + 
Sbjct: 230 VYTRVSHFLPWIRSHT 245

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score =  249 bits (637), Expect = 3e-82
 Identities = 73/253 (28%), Positives = 126/253 (49%), Gaps = 22/253 (8%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +   ++PW  ++     RR+++      CGG++I  R+V+ AAHC+  +     
Sbjct: 1   IVGGIEARPYEFPWQVSV-----RRKSSDSH--FCGGSIINDRWVVCAAHCMQGEAPALV 53

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               + VG  D    S+   + +++   ++E Y  A   ND+++ +          + PI
Sbjct: 54  S---LVVGEHDSSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPI 110

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGAT 285
           C P      +  +  +    +GWG+    G   P  LR+V +++  N  C  ++     T
Sbjct: 111 CAP----DPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVY--TSDT 164

Query: 286 INENILCAGVLSG--GKDSCGGDSGGPLMYP-LDTKYYIIGVVSYGKKCAEVGFPGVYTR 342
           I ++++CA   +G   +DSC GDSGGPL        + ++G+VS+G  CA  G+PGVY+R
Sbjct: 165 IYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCAS-GYPGVYSR 223

Query: 343 VTNYIQWIADNIS 355
           V  +  WI D I+
Sbjct: 224 VGFHAGWITDTIT 236

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score =  249 bits (639), Expect = 3e-82
 Identities = 79/257 (30%), Positives = 123/257 (47%), Gaps = 24/257 (9%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I GG+ +  GQWPW  +I          G    +CGG+L+++++VL+AAHC   +   E 
Sbjct: 1   ITGGSSAVAGQWPWQVSI-------TYEGVH--VCGGSLVSEQWVLSAAHCFPSEHHKEA 51

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
             Y V +G+  L+  S       ++  I H  Y       DIAL +L      S  I+PI
Sbjct: 52  --YEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPI 109

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSP--KLRHVQISVVDNPKCRQIFSNYG 283
            LP         F       V GWG       L     L+ +++ ++    C  +++   
Sbjct: 110 SLPA----AQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDA 165

Query: 284 A-----TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
                  + E+++CAG + GGKD+C GDSGGPL  P++  +Y+ G+VS+G  C     PG
Sbjct: 166 KPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPG 225

Query: 339 VYTRVTNYIQWIADNIS 355
           VYT  ++Y  WI   ++
Sbjct: 226 VYTLASSYASWIQSKVT 242

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score =  249 bits (638), Expect = 4e-82
 Identities = 80/259 (30%), Positives = 127/259 (49%), Gaps = 21/259 (8%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I GG  ++    PW AAI  K RR         +CGG LI+  ++L+AAHC        +
Sbjct: 1   IKGGLFADIASHPWQAAIFAKHRRSPGERF---LCGGILISSCWILSAAHCFQERFPPHH 57

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLRED----APLSDL 222
               V +G              E+E+ I+H+++      NDIAL +L+ D    A  S +
Sbjct: 58  --LTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSV 115

Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL-SPKLRHVQISVVDNPKCRQIFSN 281
           ++ +CLP       +L +     ++G+G      P  S +L+   + +  + +C      
Sbjct: 116 VRTVCLP---PADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHL- 171

Query: 282 YGATINENILCAGVLSGG------KDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVG 335
              T+ +N+LCAG    G       D+C GDSGGPL+   D +  ++G++S+G  C +  
Sbjct: 172 LNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKD 231

Query: 336 FPGVYTRVTNYIQWIADNI 354
            PGVYT+VTNY+ WI DN+
Sbjct: 232 VPGVYTKVTNYLDWIRDNM 250

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score =  250 bits (640), Expect = 4e-82
 Identities = 90/277 (32%), Positives = 126/277 (45%), Gaps = 28/277 (10%)

Query: 90  PSPDNNECGVNAFNSSK---RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGAL 146
            SP    CG      +    RI+GG+ S  G  PW+AAI        +       C G+L
Sbjct: 15  ASPGRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI----YIGDS------FCAGSL 64

Query: 147 ITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL 205
           +   +V++AAHC S     +     V +G      T+    +  IE+ I +  Y+     
Sbjct: 65  VHTCWVVSAAHCFSHSPPRDS--VSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPS 122

Query: 206 -NDIALFRLRED----APLSDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPL- 258
            +D+ L RL++     A  S  +QPICLP         F       +AGWG         
Sbjct: 123 DHDLVLIRLKKKGDRCATRSQFVQPICLP----EPGSTFPAGHKCQIAGWGHLDENVSGY 178

Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTK 318
           S  LR   + +V + KC      YGA I+ N+LCAG      D+C GDSGGPL    +  
Sbjct: 179 SSSLREALVPLVADHKCSSPEV-YGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGV 237

Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
            Y+ G++S+G  C  +  PGVYTRV NY+ WI D I 
Sbjct: 238 AYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 274

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score =  248 bits (636), Expect = 7e-82
 Identities = 77/266 (28%), Positives = 122/266 (45%), Gaps = 30/266 (11%)

Query: 97  CGV----NAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYV 152
           CGV       +   RIV G  +  G WPW  ++      +   G     CGG+LI + +V
Sbjct: 1   CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSL------QDKTGFH--FCGGSLINENWV 52

Query: 153 LTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALF 211
           +TAAHC    +       +V  G  D   +S     ++I +   + +Y S    NDI L 
Sbjct: 53  VTAAHCGVTTS------DVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLL 106

Query: 212 RLREDAPLSDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVF-RGPLSPKLRHVQISV 269
           +L   A  S  +  +CLP      S+ F   T     GWG T +       +L+   + +
Sbjct: 107 KLSTAASFSQTVSAVCLP----SASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPL 162

Query: 270 VDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK 329
           + N  C++    +G  I + ++CAG  + G  SC GDSGGPL+   +  + ++G+VS+G 
Sbjct: 163 LSNTNCKKY---WGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGS 217

Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
                  PGVY RVT  + W+   ++
Sbjct: 218 STCSTSTPGVYARVTALVNWVQQTLA 243

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score =  247 bits (633), Expect = 1e-81
 Identities = 76/254 (29%), Positives = 125/254 (49%), Gaps = 22/254 (8%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT ++R  WP   ++     + R+       CGG LI + +V+TAAHCV  + T   
Sbjct: 1   VVGGTEAQRNSWPSQISL-----QYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELT--- 52

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTS--ARKLNDIALFRLREDAPLSDLIQ 224
             + V VG  +L   +     + +++ ++H  + +       DIAL RL +   L+  +Q
Sbjct: 53  --FRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQ 110

Query: 225 PICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG 283
              LP        +    +P ++ GWG T   G L+  L+   +  VD   C      +G
Sbjct: 111 LGVLPR----AGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSY-WG 165

Query: 284 ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYT 341
           +T+  +++CAG   G +  C GDSGGPL   ++ +Y + GV S+  +  C     P V+T
Sbjct: 166 STVKNSMVCAG-GDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFT 224

Query: 342 RVTNYIQWIADNIS 355
           RV+ YI WI + I+
Sbjct: 225 RVSAYISWINNVIA 238

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score =  247 bits (632), Expect = 2e-81
 Identities = 77/253 (30%), Positives = 117/253 (46%), Gaps = 23/253 (9%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  ++   WPW  ++     + ++       CGG+LI + +V+TAAHCV    T   
Sbjct: 1   VVGGRVAQPNSWPWQISL-----QYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSART--- 52

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTS--ARKLNDIALFRLREDAPLSDLIQ 224
             + V +G  +L         + +    IH  + S       DIAL RL   A L+  +Q
Sbjct: 53  --WRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQ 110

Query: 225 PICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG 283
              LP      +++     P ++ GWG T   GPLS  L+   +  VD+  C      +G
Sbjct: 111 LAALPP----SNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGW-WG 165

Query: 284 ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVS--YGKKCAEVGFPGVYT 341
           +T+   ++CAG   G    C GDSGGPL   ++  YY+ GV S      C     P V+T
Sbjct: 166 STVKTTMVCAG--GGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFT 223

Query: 342 RVTNYIQWIADNI 354
           RV+ YI W+   +
Sbjct: 224 RVSAYISWMNGIM 236

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score =  246 bits (631), Expect = 3e-81
 Identities = 86/257 (33%), Positives = 127/257 (49%), Gaps = 24/257 (9%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  + R +WPW  ++      R  +      CGG+LI  ++VLTAAHCV PD   + 
Sbjct: 1   IVGGQEAPRSKWPWQVSL------RVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVK-DL 53

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
               V +    L        + + R I+H Q+   +   DIAL  L E   +S  +  + 
Sbjct: 54  ATLRVQLREQHLY--YQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVM 111

Query: 228 LPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSP--KLRHVQISVVDNPKCRQIFSNYG- 283
           LP      SE F    P +V GWG      PL P   L+ V++ +++N  C   +     
Sbjct: 112 LPPA----SETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAY 167

Query: 284 -----ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
                  I +++LCAG  +  +DSC GDSGGPL+  ++  +   GVVS+G+ CA+   PG
Sbjct: 168 TGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPG 225

Query: 339 VYTRVTNYIQWIADNIS 355
           +YTRVT Y+ WI   + 
Sbjct: 226 IYTRVTYYLDWIHHYVP 242

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score =  245 bits (629), Expect = 3e-81
 Identities = 83/247 (33%), Positives = 117/247 (47%), Gaps = 25/247 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT +  G +P++ +I         NG P   CGG+L+    VLTAAHCVS      +
Sbjct: 1   IVGGTSASAGDFPFIVSI-------SRNGGP--WCGGSLLNANTVLTAAHCVSGYAQSGF 51

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
           +   +  GS+    TS G++  +    +H  Y+     ND+A+ +L    P    I    
Sbjct: 52  Q---IRAGSLSR--TSGGITSSLSSVRVHPSYSGNN--NDLAILKLSTSIPSGGNIGYAR 104

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATI 286
           L       S+     +  VAGWG+T   G  +P  L  V + +V    CR  +      I
Sbjct: 105 LAASG---SDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSA--I 159

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
              + CAGV SGGKDSC GDSGGP++   D+   +IG VS+G  CA   + GVY  V   
Sbjct: 160 TNQMFCAGVSSGGKDSCQGDSGGPIV---DSSNTLIGAVSWGNGCARPNYSGVYASVGAL 216

Query: 347 IQWIADN 353
             +I   
Sbjct: 217 RSFIDTY 223

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score =  245 bits (627), Expect = 1e-80
 Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 25/250 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG        P+MA++       + NG    +CGG L+  ++VLTAAHC++       
Sbjct: 1   IIGGREVIPHSRPYMASL-------QRNGSH--LCGGVLVHPKWVLTAAHCLAQRMA--- 48

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSDLIQPI 226
               + +G   L+     ++  I+  I H +Y     L ND+AL +L      S  I+P+
Sbjct: 49  -QLRLVLGLHTLDSPG--LTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPL 105

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
            LP     + ++    T   +AGWG T   G LS  LR + + V+D   C      +  +
Sbjct: 106 ALPS----KRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNS-RFWNGS 160

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVT 344
           ++ +++C    S  +  C GDSGGPL+        + GV+S+  + C ++  P V T V 
Sbjct: 161 LSPSMVCLAADSKDQAPCKGDSGGPLVC--GKGRVLAGVLSFSSRVCTDIFKPPVATAVA 218

Query: 345 NYIQWIADNI 354
            Y+ WI    
Sbjct: 219 PYVSWIRKVT 228

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score =  243 bits (623), Expect = 5e-80
 Identities = 83/255 (32%), Positives = 128/255 (50%), Gaps = 23/255 (9%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  +    WPW  ++     +  ++G+    CGG L+ + +VLTAAHC+S   T   
Sbjct: 1   VVGGEDARPNSWPWQVSL-----QYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRT--- 52

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSAR--KLNDIALFRLREDAPLSDLIQ 224
             Y V +G   L     G +++++ + ++H+ + S +    NDIAL +L     L+D IQ
Sbjct: 53  --YRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQ 110

Query: 225 PICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG 283
             CLP        +       +V GWG     G     L+  Q+ VVD   C +    +G
Sbjct: 111 LGCLPA----AGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGW-WG 165

Query: 284 ATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGKK--CAEVGFPGVY 340
           +T+  N++CAG   G   SC GDSGGPL     + ++ + G+VS+G    C     P V+
Sbjct: 166 STVKTNMICAG-GDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVF 224

Query: 341 TRVTNYIQWIADNIS 355
           TRV+NYI WI   I+
Sbjct: 225 TRVSNYIDWINSVIA 239

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score =  242 bits (620), Expect = 2e-79
 Identities = 85/256 (33%), Positives = 120/256 (46%), Gaps = 25/256 (9%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG+ S  G  PW+AAI        +       C G+L+   +V++AAHC S     + 
Sbjct: 1   IIGGSSSLPGSHPWLAAI----YIGDS------FCAGSLVHTCWVVSAAHCFSHSPPRDS 50

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL-NDIALFRLRED----APLSD 221
               V +G      T+    +  IE+ I +  Y+      +D+ L RL++     A  S 
Sbjct: 51  --VSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQ 108

Query: 222 LIQPICLPYDTNLRSELFERKTP-FVAGWGSTV-FRGPLSPKLRHVQISVVDNPKCRQIF 279
            +QPICLP         F       +AGWG         S  LR   + +V + KC    
Sbjct: 109 FVQPICLP----EPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPE 164

Query: 280 SNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 339
             YGA I+ N+LCAG      D+C GDSGGPL    +   Y+ G++S+G  C  +  PGV
Sbjct: 165 V-YGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGV 223

Query: 340 YTRVTNYIQWIADNIS 355
           YTRV NY+ WI D I 
Sbjct: 224 YTRVANYVDWINDRIR 239

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score =  240 bits (614), Expect = 8e-79
 Identities = 68/246 (27%), Positives = 106/246 (43%), Gaps = 23/246 (9%)

Query: 110 GGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEP 169
           GG  ++  Q PW  A+      R   G+    CGGA++++ +VLTAAHCV          
Sbjct: 2   GGEKTDIKQVPWTVAV------RTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPET--- 52

Query: 170 YIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL-IQPICL 228
            ++   S +L +   G S      +    Y      NDIA+  L     L  L  +P  L
Sbjct: 53  IVIQYESTNLWE-DPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKL 111

Query: 229 PYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINE 288
           P   ++           V+G+G      P    L+  Q++VVD  +CR  +      ++ 
Sbjct: 112 P---DIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPI--FLSL 166

Query: 289 NILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQ 348
            + CA     G     GD+G P +     +  ++GV +Y  K  E G P V+T+V +Y+ 
Sbjct: 167 QVFCAQ--KVGVSLESGDAGDPTVQ----QDTLVGVAAYFPKRPE-GAPEVFTKVGSYVS 219

Query: 349 WIADNI 354
           WI D I
Sbjct: 220 WIQDII 225

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score =  239 bits (612), Expect = 1e-78
 Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 27/248 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +  G++P+  ++       R +G     CG +++    VLTAAHCV   +    
Sbjct: 1   IVGGKDAPVGKYPYQVSL-------RLSGSH--RCGASILDNNNVLTAAHCVDGLSNLNR 51

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
               VHVG+  L  + SG   ++E  ++++ Y      ND+AL  L      +DL+QPI 
Sbjct: 52  --LKVHVGTNYL--SESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIK 107

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           L        E  E     + GWGST   G     L+ +++ V    +C +        + 
Sbjct: 108 LS----TNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWR----VI 159

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
           ++ +C      G+ +C GDSGGPL+         IG+VS+G  CA +G P VYTRV++++
Sbjct: 160 DSHICTL-TKRGEGACHGDSGGPLVA----NGAQIGIVSFGSPCA-LGEPDVYTRVSSFV 213

Query: 348 QWIADNIS 355
            WI  N+ 
Sbjct: 214 SWINANLK 221

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score =  239 bits (613), Expect = 1e-78
 Identities = 84/253 (33%), Positives = 126/253 (49%), Gaps = 25/253 (9%)

Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE 166
            I+GG        P+MA+I       +  G    +CGG LI  ++VLTAAHC    T G+
Sbjct: 2   EIIGGKEVSPHSRPFMASI-------QYGGHH--VCGGVLIDPQWVLTAAHCQYRFTKGQ 52

Query: 167 YEPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
                V +G+  L ++ +S  ++EI++ I   + TS  + NDI L +L+  A L+  ++ 
Sbjct: 53  S--PTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKM 110

Query: 226 ICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPL-SPKLRHVQISVVDNPKCRQIFS-NY 282
           + +   T+LRS      T   V GWG+T       S  LR V ++V+    C      N 
Sbjct: 111 LHIRSKTSLRSG-----TKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNG 165

Query: 283 GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTR 342
              I ++++CAG   G KDSC GD+GGPL+     K     +VS G +C     PG+YT 
Sbjct: 166 DPFITKDMVCAGDAKGQKDSCKGDAGGPLIC----KGVFHAIVSGGHECGVATKPGIYTL 221

Query: 343 VT-NYIQWIADNI 354
           +T  Y  WI  N+
Sbjct: 222 LTKKYQTWIKSNL 234

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score =  239 bits (611), Expect = 2e-78
 Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 23/247 (9%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+ G  +  G +P+ A +   ++ +R        CGG+LI  +++LTAAHCV    +   
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQRR-----VWCGGSLIDNKWILTAAHCVHDAVS--- 52

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              +V++GS           +  ER I H  +     LND+AL ++      +D IQPI 
Sbjct: 53  --VVVYLGSAVQ--YEGEAVVNSERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIR 107

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP      +  FE     V+GWG +      +  L++    V+DN +C Q +      I 
Sbjct: 108 LP-SGEELNNKFENIWATVSGWGQS---NTDTVILQYTYNLVIDNDRCAQEY--PPGIIV 161

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA-EVGFPGVYTRVTNY 346
           E+ +C    S GK  C GDSGGP +     K  +IGVVS+      E G P  ++RVT+Y
Sbjct: 162 ESTICGD-TSDGKSPCFGDSGGPFVL--SDKNLLIGVVSFVSGAGCESGKPVGFSRVTSY 218

Query: 347 IQWIADN 353
           + WI  N
Sbjct: 219 MDWIQQN 225

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score =  239 bits (612), Expect = 7e-78
 Identities = 44/266 (16%), Positives = 83/266 (31%), Gaps = 25/266 (9%)

Query: 91  SPDNNECG-VNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITK 149
             D+ +C   +              +    PW   +        + G  +  CGG +I +
Sbjct: 35  GEDHKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKL------TNSEG--KDFCGGVIIRE 86

Query: 150 RYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIA 209
            +VLT A C        +    V             + I+I    +H +Y +    ND++
Sbjct: 87  NFVLTTAKCSL-----LHRNITVKTYFNRTSQDP--LMIKITHVHVHMRYDADAGENDLS 139

Query: 210 LFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISV 269
           L  L           P+C P        L  R    ++GW        L   L    +++
Sbjct: 140 LLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARN--GTDLGNSLTTRPVTL 197

Query: 270 VDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK 329
           V+  +C Q+      T+     C         +     G  +       +++ GV+    
Sbjct: 198 VEGEECGQV---LNVTVTTRTYCER---SSVAAMHWMDGSVVTREHRGSWFLTGVLGSQ- 250

Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
                    + T+V+ Y  W    ++
Sbjct: 251 PVGGQAHMVLVTKVSRYSLWFKQIMN 276

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score =  240 bits (614), Expect = 2e-77
 Identities = 80/279 (28%), Positives = 122/279 (43%), Gaps = 43/279 (15%)

Query: 97  CGV--NAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
           CGV    F   +RI+GG+ ++   +PW                     GGALI + +VLT
Sbjct: 70  CGVPREPFEEKQRIIGGSDADIKNFPWQVFFD------------NPWAGGALINEYWVLT 117

Query: 155 AAHCVSPDTTGEYEPYIVHVGSIDLEDTSSG--VSIEIERPIIHEQYTSARKL------- 205
           AAH V  +         ++VGS  ++ +       +  E   IH  +             
Sbjct: 118 AAHVVEGNRE-----PTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFD 172

Query: 206 NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHV 265
           NDIAL RL++   +   + PICLP  T+    L +     ++GWG T  +   + +L+  
Sbjct: 173 NDIALVRLKDPVKMGPTVSPICLP-GTSSDYNLMDGDLGLISGWGRT-EKRDRAVRLKAA 230

Query: 266 QISVVDNPKCRQIFSN------YGATINENILCAGVLSGGKDSCGGDSGGPLMYPL---D 316
           ++ V    KC+++                N++CAG    G DSC GDSGG          
Sbjct: 231 RLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAG-GEKGMDSCKGDSGGAFAVQDPNDK 289

Query: 317 TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           TK+Y  G+VS+G +C      G+YTRV NY+ WI   + 
Sbjct: 290 TKFYAAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTMQ 325

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score =  236 bits (604), Expect = 3e-77
 Identities = 73/250 (29%), Positives = 113/250 (45%), Gaps = 31/250 (12%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +    WP  AA+         +    + CGG+LI+  ++LTAAHC+        
Sbjct: 1   IVGGVEAVPNSWPHQAAL-------FIDDM--YFCGGSLISPEWILTAAHCMDGAGF--- 48

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++ +  +  V+I+     +HE Y S    NDIA+ RL     L+  I  +
Sbjct: 49  --VDVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATV 106

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
            LP      +++         GWG        +S  LR V + ++ N  C  +   YG  
Sbjct: 107 GLP-----STDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAV---YG-I 157

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVT 344
           + +  +C    +GGK +C GDSGGPL Y         G+ S+G     E G+P  +TRVT
Sbjct: 158 VTDGNICIDS-TGGKGTCNGDSGGPLNY----NGLTYGITSFGAAAGCEAGYPDAFTRVT 212

Query: 345 NYIQWIADNI 354
            ++ WI    
Sbjct: 213 YFLDWIQTQT 222

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score =  236 bits (604), Expect = 3e-77
 Identities = 74/251 (29%), Positives = 118/251 (47%), Gaps = 26/251 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +E    P+MA++       + NG    +CGG L+ +++VL+AAHC+     G+ 
Sbjct: 1   ILGGREAEAHARPYMASV-------QLNGAH--LCGGVLVAEQWVLSAAHCLEDAADGKV 51

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           +   V +G+  L +   S    ++ R + H         +D+ L +L E A L   ++P+
Sbjct: 52  Q---VLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPL 108

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
                           T   VAGWG     G     L+HV + V+D   C +    +   
Sbjct: 109 PWQR----VDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTH-HDGA 163

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVT 344
           I E ++CA   S  +DSC GD+GGPL+        + GVV+ G + C     PG+YTRV 
Sbjct: 164 ITERLMCAE--SNRRDSCKGDAGGPLV----CGGVLEGVVTSGSRVCGNRKKPGIYTRVA 217

Query: 345 NYIQWIADNIS 355
           +Y  WI   ++
Sbjct: 218 SYAAWIDSVLA 228

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score =  235 bits (602), Expect = 4e-77
 Identities = 78/250 (31%), Positives = 117/250 (46%), Gaps = 32/250 (12%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   +    P   ++                CGG+L+ + +V++AAHC         
Sbjct: 1   IVGGYECKAYSQPHQVSL----NSGYH------FCGGSLVNENWVVSAAHCYKSR----- 45

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G  +++ T      I   R I H  Y+S    NDI L +L + A L+  +QP+
Sbjct: 46  --VEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPV 103

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
            LP      +      T   V+GWG+T+     S KL+ + I ++    C    ++Y   
Sbjct: 104 ALP------TSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCN---NSYPGM 154

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           I   + CAG L GGKDSC GDSGGP++        + GVVS+G  CAE G PGVY +V  
Sbjct: 155 ITNAMFCAGYLEGGKDSCQGDSGGPVV----CNGELQGVVSWGYGCAEPGNPGVYAKVCI 210

Query: 346 YIQWIADNIS 355
           +  W+   ++
Sbjct: 211 FNDWLTSTMA 220

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score =  235 bits (603), Expect = 4e-77
 Identities = 67/253 (26%), Positives = 101/253 (39%), Gaps = 29/253 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  S+  + PW   +         + KP   CGG+++T  +V+TAA CV      + 
Sbjct: 1   IIGGKKSDITKEPWAVGV-------LVDEKP--FCGGSILTANFVITAAQCVDGTKPSDI 51

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD-LIQPI 226
               +H GS      ++  +  + + I   +Y      N+ A+        L D   + I
Sbjct: 52  S---IHYGSSYR---TTKGTSVMAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKI 105

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRG-PLSPKLRHVQISVVDNPKCRQIFSN--Y 282
            LP          E  T   V+GWGST F+    S  L     +VVD   C + +     
Sbjct: 106 ELP----SLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEA 161

Query: 283 GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTR 342
              I + + CAG          GD+G P +        ++GV SY        FP V+ R
Sbjct: 162 DKYIYDGVFCAGGEYDETYIGYGDAGDPAVQ----NGTLVGVASYISSMPS-EFPSVFLR 216

Query: 343 VTNYIQWIADNIS 355
           V  Y+  I D IS
Sbjct: 217 VGYYVLDIKDIIS 229

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score =  235 bits (602), Expect = 6e-77
 Identities = 84/250 (33%), Positives = 121/250 (48%), Gaps = 27/250 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+        
Sbjct: 1   IVGGYNCKDGEVPWQALL--------INEENEGFCGGTILSEFYILTAAHCLYQAKR--- 49

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
             + V VG  + E    G    E+E  I H ++T      DIA+ RL+        + P 
Sbjct: 50  --FKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGAT 285
            LP      +         ++GWG+T   G   P  L+ +   V+   KC     +Y   
Sbjct: 108 SLP-----TAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEA---SYPGK 159

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           I  N+ C G L GGKDSC GDSGGP++        + GVVS+G  CA+   PGVYT+V N
Sbjct: 160 ITSNMFCVGFLEGGKDSCQGDSGGPVV----CNGQLQGVVSWGDGCAQKNKPGVYTKVYN 215

Query: 346 YIQWIADNIS 355
           Y++WI + I+
Sbjct: 216 YVKWIKNTIA 225

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score =  235 bits (602), Expect = 6e-77
 Identities = 67/252 (26%), Positives = 102/252 (40%), Gaps = 27/252 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG      +  ++ A+         +      CGG LI + +VLTAAHC   +     
Sbjct: 1   IIGGDECNINEHRFLVAL-------YTSRSRTLFCGGTLINQEWVLTAAHCDRKN----- 48

Query: 168 EPYIVHVG--SIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
             + + +G  S  + +      +  E+              DI L RL      S  I P
Sbjct: 49  --FRIKLGMHSKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAP 106

Query: 226 ICLPYDTNLRSELFERKTPFVAGWGST-VFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
             LP      S         + GWG      G        V I++++   CR  +  +  
Sbjct: 107 FSLP-----SSPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFEL 161

Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRV 343
                 LCAG+L GGKD+C GDSGGPL+          G+ S+G   CA+   P  YT+V
Sbjct: 162 PATSRTLCAGILEGGKDTCKGDSGGPLIC----NGQFQGIASWGDDPCAQPHKPAAYTKV 217

Query: 344 TNYIQWIADNIS 355
            +++ WI + I+
Sbjct: 218 FDHLDWIENIIA 229

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score =  234 bits (599), Expect = 2e-76
 Identities = 72/249 (28%), Positives = 106/249 (42%), Gaps = 23/249 (9%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +V G P+ R    WM ++       R   K   +CGG+LI + +VLTA  C       +Y
Sbjct: 1   VVNGIPT-RTNIGWMVSL-------RYRNKH--ICGGSLIKESWVLTARQCFPSRDLKDY 50

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
           E     +G  D+         + ++ +   Q     + +D+ L +L   A L D +  I 
Sbjct: 51  E---AWLGIHDV---HGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTID 104

Query: 228 LPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           LP            KT   V GWG T         LR   + ++ N KC Q       T+
Sbjct: 105 LPN----YGSTIPEKTSCSVYGWGYTG-LINYDGLLRVAHLYIMGNEKCSQHHR-GKVTL 158

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
           NE+ +CAG    G   C GD GGPL+        ++GV+  G+ CA    PG++ RV  Y
Sbjct: 159 NESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYY 218

Query: 347 IQWIADNIS 355
            +WI   I 
Sbjct: 219 AKWIHKIIL 227

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score =  234 bits (598), Expect = 2e-76
 Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 30/252 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG P   G  PW  ++      R   G+    CGG+L+ ++++LTA  C S       
Sbjct: 1   VVGGHP---GNSPWTVSL------RNRQGQH--FCGGSLVKEQWILTARQCFSSCHM-PL 48

Query: 168 EPYIVHVGSIDL---EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQ 224
             Y V +G++         S   + + + +           + + L +L     L+  + 
Sbjct: 49  TGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSG------SQLVLLKLERSVTLNQRVA 102

Query: 225 PICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG 283
            ICLP        +    T   +AGWG T   G     L    ++V+ N +C      + 
Sbjct: 103 LICLPP----EWYVVPPGTKCEIAGWGETKGTGN-DTVLNVALLNVISNQECNIK---HR 154

Query: 284 ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV 343
             + E+ +C   L     +C GD GGPL       + + G++   + CA   +P V+TRV
Sbjct: 155 GRVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRV 214

Query: 344 TNYIQWIADNIS 355
           + ++ WI   + 
Sbjct: 215 SVFVDWIHKVMR 226

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score =  233 bits (596), Expect = 4e-76
 Identities = 72/249 (28%), Positives = 108/249 (43%), Gaps = 27/249 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  ++    P+MA +    ++          CGG LI   +VLTAAHC         
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSLK------RCGGFLIRDDFVLTAAHCWGS------ 48

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++ E   +   I ++RPI H  Y      NDI L +L   A  +  +QP+
Sbjct: 49  -SINVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPL 107

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
            LP          +      VAGWG T   G  S  L+ V+++V ++ KC          
Sbjct: 108 RLPS----NKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDL--RHYY 161

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
            +   LC G     K S  GDSGGPL+          G+VSYG+       P   T+V++
Sbjct: 162 DSTIELCVGDPEIKKTSFKGDSGGPLVC----NKVAQGIVSYGRNNGM--PPRACTKVSS 215

Query: 346 YIQWIADNI 354
           ++ WI   +
Sbjct: 216 FVHWIKKTM 224

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score =  232 bits (595), Expect = 6e-76
 Identities = 80/249 (32%), Positives = 116/249 (46%), Gaps = 28/249 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  ++    P+MA + FK   +        +CGG L+ + +VLTAAHC+        
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFKTSGKSH------ICGGFLVREDFVLTAAHCLGSS----- 49

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++ E   +   I + RPI H  Y      NDI L +L   A ++D + PI
Sbjct: 50  --INVTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPI 107

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
            LP          +      VAGWG      P + KL+ V + V    KC   F NY   
Sbjct: 108 NLPR----SLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNY--- 160

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           I    +CAG  S  K+S  GDSGGPL+          G+VSYG+       P VYTR+++
Sbjct: 161 IPFTQICAGDPSKRKNSFSGDSGGPLVC----NGVAQGIVSYGRNDG--TTPDVYTRISS 214

Query: 346 YIQWIADNI 354
           ++ WI   +
Sbjct: 215 FLSWIHSTM 223

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score =  232 bits (595), Expect = 7e-76
 Identities = 76/254 (29%), Positives = 113/254 (44%), Gaps = 26/254 (10%)

Query: 111 GTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPY 170
           G  +    W W  ++     +   +G     CGG+LI   +V+TA HC+S   T     Y
Sbjct: 2   GEDAVPYSWSWQVSL-----QYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRT-----Y 51

Query: 171 IVHVGSIDLEDTSSG---VSIEIERPIIHEQYTS--ARKLNDIALFRLREDAPLSDLIQP 225
            V +G  D          + I      +H  + S      NDIAL +L   A L D +Q 
Sbjct: 52  QVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQL 111

Query: 226 ICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
             LP       ++   + P +++GWG     GPL  KL+   +  VD   C Q    +G 
Sbjct: 112 ANLPPA----GDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDW-WGI 166

Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVS--YGKKCAEVGFPGVYT 341
           T+ + ++CAG     +  C GDSGGPL  P  D  + + GV S      C  +  P V+T
Sbjct: 167 TVKKTMVCAG--GDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFT 224

Query: 342 RVTNYIQWIADNIS 355
           RV+ +I WI + I+
Sbjct: 225 RVSAFIDWIDETIA 238

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score =  232 bits (594), Expect = 8e-76
 Identities = 86/250 (34%), Positives = 116/250 (46%), Gaps = 31/250 (12%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +V G P ++   P+ AA+         +G    +CGG LI   +VLTAAHC  P+     
Sbjct: 1   LVHGGPCDKTSHPYQAAL-------YTSGHL--LCGGVLIHPLWVLTAAHCKKPN----- 46

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G  +L +  SS     + R +IH  Y +A    DI L RL   A LS+LIQP+
Sbjct: 47  --LQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL 104

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            L      R       +  + GWG T   G     ++   I +V   +C      Y   I
Sbjct: 105 PLE-----RDCSANTTSCHILGWGKT-ADGDFPDTIQCAYIHLVSREECE---HAYPGQI 155

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTN 345
            +N+LCAG    GKDSC GDSGGPL+       ++ G+VS+G   C     PGVYT V  
Sbjct: 156 TQNMLCAGDEKYGKDSCQGDSGGPLV----CGDHLRGLVSWGNIPCGSKEKPGVYTNVCR 211

Query: 346 YIQWIADNIS 355
           Y  WI   I 
Sbjct: 212 YTNWIQKTIQ 221

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score =  234 bits (600), Expect = 1e-75
 Identities = 49/309 (15%), Positives = 88/309 (28%), Gaps = 29/309 (9%)

Query: 52  GLEGR----LPKVCCPQHTLTNDQPTT-TTRRPNNRNGAFTKLPSPDNNECGVNAFNSSK 106
           G EG         C P+ T                      +L          +      
Sbjct: 33  GYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGV 92

Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE 166
                   +    PW   +        + G  +  CGG +I + +VLT A C        
Sbjct: 93  LTSEKRAPDLQDLPWQVKL------TNSEG--KDFCGGVIIRENFVLTTAKCSL-----L 139

Query: 167 YEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           +    V             + I+I    +H +Y +    ND++L  L           P+
Sbjct: 140 HRNITVKTYFNRTSQDP--LMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPV 197

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           C P        L  R    ++GW        L   L    +++V+  +C Q+      T+
Sbjct: 198 CTPEKDFAEHLLIPRTRGLLSGWARN--GTDLGNSLTTRPVTLVEGEECGQV---LNVTV 252

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
                C         +     G  +       +++ GV+             + T+V+ Y
Sbjct: 253 TTRTYCER---SSVAAMHWMDGSVVTREHRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRY 308

Query: 347 IQWIADNIS 355
             W    ++
Sbjct: 309 SLWFKQIMN 317

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score =  231 bits (592), Expect = 2e-75
 Identities = 74/253 (29%), Positives = 117/253 (46%), Gaps = 29/253 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG        P+M  +         + K   +C GALI K +VLTAAHC         
Sbjct: 1   IIGGNEVTPHSRPYMVLL-------SLDRKT--ICAGALIAKDWVLTAAHCNLNKR---- 47

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+  +  +  +   + +++   +  Y  A +  D+ L +L E A ++  +  +
Sbjct: 48  --SQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTIL 105

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIF-SNYGA 284
            LP     + +  +  T   VAGWG T      S  LR V+I+++D   C      N+  
Sbjct: 106 HLPK----KGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNP 161

Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYTR 342
            I  N++CAG L GG+DSC GDSG PL+     +    GV S+G +  C +   PGVY  
Sbjct: 162 VIGMNMVCAGSLRGGRDSCNGDSGSPLLC----EGVFRGVTSFGLENKCGDPRGPGVYIL 217

Query: 343 VT-NYIQWIADNI 354
           ++  ++ WI   I
Sbjct: 218 LSKKHLNWIIMTI 230

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score =  230 bits (588), Expect = 6e-75
 Identities = 77/250 (30%), Positives = 119/250 (47%), Gaps = 28/250 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  S     P+MA +               +CGG LI++++VLTAAHC   +     
Sbjct: 1   IIGGVESIPHSRPYMAHL-----DIVTEKGLRVICGGFLISRQFVLTAAHCKGRE----- 50

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ D+ +  S+   I++E+ IIHE Y S   L+DI L +L +   L+  +  +
Sbjct: 51  --ITVILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVV 108

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
            LP      S+        + AGWG T  R P S  LR V++ ++D   C      Y   
Sbjct: 109 PLP----SPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVD----YRYY 160

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
             +  +C G  +  + +  GDSGGPL+          G+VSYG   A+   P ++TRV+ 
Sbjct: 161 EYKFQVCVGSPTTLRAAFMGDSGGPLLC----AGVAHGIVSYGHPDAK--PPAIFTRVST 214

Query: 346 YIQWIADNIS 355
           Y+ WI   I+
Sbjct: 215 YVPWINAVIN 224

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score =  229 bits (586), Expect = 1e-74
 Identities = 73/249 (29%), Positives = 109/249 (43%), Gaps = 29/249 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  S     P+MA +  +    ++       CGG L+ + +VLTAAHC   +     
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAGQS------RCGGFLVREDFVLTAAHCWGSN----- 49

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++    ++   I   R I H QY      NDI L +L      +  + P+
Sbjct: 50  --INVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPV 107

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
            LP       E     T   VAGWG        +  LR VQ+ V  + +C +IF +Y   
Sbjct: 108 ALPR----AQEGLRPGTLCTVAGWGRVSM-RRGTDTLREVQLRVQRDRQCLRIFGSY--- 159

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
                +C G     K +  GDSGGPL+          G+VSYGK       P V+TRV++
Sbjct: 160 DPRRQICVGDRRERKAAFKGDSGGPLLC----NNVAHGIVSYGKSSGV--PPEVFTRVSS 213

Query: 346 YIQWIADNI 354
           ++ WI   +
Sbjct: 214 FLPWIRTTM 222

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score =  229 bits (586), Expect = 1e-74
 Identities = 78/250 (31%), Positives = 116/250 (46%), Gaps = 31/250 (12%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG        P+  ++                CGG+LI  ++V++AAHC         
Sbjct: 1   IVGGYTCGANTVPYQVSL----NSGYH------FCGGSLINSQWVVSAAHCYKSG----- 45

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G  ++     +   I   + I+H  Y S    NDI L +L+  A L+  +  I
Sbjct: 46  --IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASI 103

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGAT 285
            LP      S         ++GWG+T   G   P  L+ ++  ++ +  C+   S Y   
Sbjct: 104 SLP-----TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK---SAYPGQ 155

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           I  N+ CAG L GGKDSC GDSGGP++        + G+VS+G  CA+   PGVYT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVV----CSGKLQGIVSWGSGCAQKNKPGVYTKVCN 211

Query: 346 YIQWIADNIS 355
           Y+ WI   I+
Sbjct: 212 YVSWIKQTIA 221

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score =  228 bits (585), Expect = 2e-74
 Identities = 68/249 (27%), Positives = 105/249 (42%), Gaps = 26/249 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG        P+MA            G  +  CGG L+  ++VLTAAHC         
Sbjct: 1   IIGGNEISPHSRPYMAYY-----EFLKVGGKKMFCGGFLVRDKFVLTAAHCKGRS----- 50

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++     +   I + + I H  Y    + NDI L +L  +A  +  ++P+
Sbjct: 51  --MTVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPL 108

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
            LP     R+   +     +VAGWG     G     L  V+++V  +  C   F    + 
Sbjct: 109 NLP----RRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF--QSSY 162

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
              N +C G       S   DSGGPL+     K    G+VSYG+       P V+TRV +
Sbjct: 163 NRANEICVGDSKIKGASFEEDSGGPLVC----KRAAAGIVSYGQTDG--SAPQVFTRVLS 216

Query: 346 YIQWIADNI 354
           ++ WI   +
Sbjct: 217 FVSWIKKTM 225

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score =  228 bits (584), Expect = 3e-74
 Identities = 77/250 (30%), Positives = 119/250 (47%), Gaps = 31/250 (12%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+ G P  RG  PW  A+        +  +    CGG L+ +R+VLTAAHC         
Sbjct: 1   IIDGAPCARGSHPWQVAL-------LSGNQL--HCGGVLVNERWVLTAAHCKMN------ 45

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
             Y VH+GS  L D      I+  +   H  Y++   +ND+ L +L   A LS +++ + 
Sbjct: 46  -EYTVHLGSDTLGD-RRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVR 103

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATI 286
           LP             T  V+GWG+T       P  L  V + ++    C ++   Y   +
Sbjct: 104 LP-----SRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKV---YKDLL 155

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTN 345
             ++LCAG+    K++C GDSGGPL+     +  + G+VS+G   C +   PGVYT+V  
Sbjct: 156 ENSMLCAGIPDSKKNACNGDSGGPLVC----RGTLQGLVSWGTFPCGQPNDPGVYTQVCK 211

Query: 346 YIQWIADNIS 355
           + +WI D + 
Sbjct: 212 FTKWINDTMK 221

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score =  227 bits (582), Expect = 4e-74
 Identities = 71/251 (28%), Positives = 107/251 (42%), Gaps = 32/251 (12%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+ G        PW AA+           +    C G L+  ++VL+AAHC         
Sbjct: 1   IINGEDCSPHSQPWQAAL-------VMENEL--FCSGVLVHPQWVLSAAHCFQNS----- 46

Query: 168 EPYIVHVG--SIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
             Y + +G  S++ +       +E    + H +Y      ND+ L +L E    SD I+ 
Sbjct: 47  --YTIGLGLHSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRS 104

Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
           I +              +  V+GWG     G +   L+ V +SVV    C      Y   
Sbjct: 105 ISIA-----SQCPTAGNSCLVSGWGLLA-NGRMPTVLQCVNVSVVSEEVCS---KLYDPL 155

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVT 344
            + ++ CAG     KDSC GDSGGPL+       Y+ G+VS+G   C +VG PGVYT + 
Sbjct: 156 YHPSMFCAGGGQDQKDSCNGDSGGPLIC----NGYLQGLVSFGKAPCGQVGVPGVYTNLC 211

Query: 345 NYIQWIADNIS 355
            + +WI   + 
Sbjct: 212 KFTEWIEKTVQ 222

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score =  227 bits (581), Expect = 6e-74
 Identities = 73/250 (29%), Positives = 106/250 (42%), Gaps = 34/250 (13%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +   Q+P++A+I       +  G+    CGGALI  R+V+TAA C      G  
Sbjct: 1   IVGGRKARPRQFPFLASI-------QNQGRH--FCGGALIHARFVMTAASCFQSQNPGVS 51

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ DL               +    Y   + LND+ L +L  +A L+  +  +
Sbjct: 52  T---VVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTIL 108

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
            LP    L++   E  T   VAGWGS    G LS   R V ++V    +C          
Sbjct: 109 PLP----LQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQC---------- 154

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
              N +C GVL+     C GD G PL+     +    GV S+       G P  +TRV  
Sbjct: 155 -RPNNVCTGVLTRRGGICNGDGGTPLVC----EGLAHGVASFSLGPCGRG-PDFFTRVAL 208

Query: 346 YIQWIADNIS 355
           +  WI   ++
Sbjct: 209 FRDWIDGVLN 218

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score =  237 bits (607), Expect = 7e-74
 Identities = 92/341 (26%), Positives = 135/341 (39%), Gaps = 41/341 (12%)

Query: 25  QCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTNDQPTTTTRRPNNRNG 84
            C+    I +  + N            G  G           LT D      R  +    
Sbjct: 247 HCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLP- 305

Query: 85  AFTKLPSPDNNECGV--NAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMC 142
                       CGV        KRIVGG  ++ G  PW  AI       +        C
Sbjct: 306 ---------KLSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAI-------KDASGI--TC 347

Query: 143 GGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSG--VSIEIERPIIHEQYT 200
           GG  I   ++LTAAHC+    T  Y+   +    +D         V   ++R I HE Y 
Sbjct: 348 GGIYIGGCWILTAAHCLRASKTHRYQ---IWTTVVDWIHPDLKRIVIEYVDRIIFHENYN 404

Query: 201 SARKLNDIALFRLREDAPLSDL----IQPICLPYDTNLRSELFERKTP-FVAGWGSTVFR 255
           +    NDIAL  +++D    D       P C+P+       LF+      V+GWG     
Sbjct: 405 AGTYQNDIALIEMKKDGNKKDCELPRSIPACVPW----SPYLFQPNDTCIVSGWGREKDN 460

Query: 256 GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP- 314
                 L+  ++ ++ N  C + +        + + CAG   G  D+C GDSGGPL+   
Sbjct: 461 ER-VFSLQWGEVKLISN--CSKFY--GNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMD 515

Query: 315 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
            +   Y+ GVVS+G+ C +  FPGVYT+V NY  WI+ ++ 
Sbjct: 516 ANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISYHVG 556

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score =  227 bits (581), Expect = 7e-74
 Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 29/251 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG      + P++ A+         +      C GALI + +VLTAAHC   +     
Sbjct: 1   VVGGDECNINEHPFLVAL-------YTSASSTIHCAGALINREWVLTAAHCDRRN----- 48

Query: 168 EPYIVHVG--SIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
               + +G  S ++ +    + +   +              DI L RLR     S  I P
Sbjct: 49  --IRIKLGMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAP 106

Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
           + LP                + GWG                I +V +  C  ++      
Sbjct: 107 VSLP-----SRSRGVGSRCRIMGWGKIS-TTTYPDVPHCTNIFIVKHKWCEPLY--PWVP 158

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVT 344
            +   LCAG+L GG+D+C GDSGGPL+        + G+V+ G + C +   P VYT+V 
Sbjct: 159 ADSRTLCAGILKGGRDTCHGDSGGPLIC----NGEMHGIVAGGSEPCGQHLKPAVYTKVF 214

Query: 345 NYIQWIADNIS 355
           +Y  WI   I+
Sbjct: 215 DYNNWIQSIIA 225

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score =  225 bits (577), Expect = 2e-73
 Identities = 71/249 (28%), Positives = 115/249 (46%), Gaps = 28/249 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GGT  +    P+MA +         +  P   CGG LI + +VLTAAHC         
Sbjct: 1   IIGGTECKPHSRPYMAYL-----EIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRS----- 50

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++ E+  +   +E+ +   H +Y ++   +DI L +L+E A L+  +  +
Sbjct: 51  --ITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTL 108

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
             P     +           VAGWG T    P S  L+ V++ ++D   C    S++   
Sbjct: 109 PFPS----QFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQAC----SHFRDF 160

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
            +   LC G     K +  GDSGGPL+          G+VSYG+  A+   P V+TR+++
Sbjct: 161 DHNLQLCVGNPRKTKSAFKGDSGGPLLC----AGVAQGIVSYGRSDAK--PPAVFTRISH 214

Query: 346 YIQWIADNI 354
           Y  WI   +
Sbjct: 215 YRPWINQIL 223

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score =  224 bits (573), Expect = 9e-73
 Identities = 58/250 (23%), Positives = 95/250 (38%), Gaps = 36/250 (14%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +    WP+M ++       +  G     CG  LI   +V++AAHCV+       
Sbjct: 1   IVGGRRARPHAWPFMVSL-------QLRGGH--FCGATLIAPNFVMSAAHCVANVNVRAV 51

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ +L           ++R I    Y     LNDI + +L   A ++  +Q  
Sbjct: 52  R---VVLGAHNLSRREPTRQVFAVQR-IFENGYDPVNLLNDIVILQLNGSATINANVQVA 107

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
            LP     +             GWG       ++  L+ + ++VV +             
Sbjct: 108 QLPA----QGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTS------------L 151

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVT 344
              + +C  V       C GDSG PL+        I G+ S+ +  CA   +P  +  V 
Sbjct: 152 CRRSNVCTLVRGRQAGVCFGDSGSPLVC----NGLIHGIASFVRGGCASGLYPDAFAPVA 207

Query: 345 NYIQWIADNI 354
            ++ WI   I
Sbjct: 208 QFVNWIDSII 217

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score =  224 bits (573), Expect = 1e-72
 Identities = 68/252 (26%), Positives = 106/252 (42%), Gaps = 34/252 (13%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           ++GG      +  ++A +        ANG    +CGG LI + +VLTA HC   +     
Sbjct: 1   VIGGDECNINEHRFLALV-------YANGS---LCGGTLINQEWVLTARHCDRGN----- 45

Query: 168 EPYIVHVG--SIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
               +++G  ++ + +  +      E+              DI L RL      S  I P
Sbjct: 46  --MRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAP 103

Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTV-FRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
           + LP      +         + GWG+       L        I+++D   C+  +     
Sbjct: 104 LSLP-----SNPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKG--- 155

Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRV 343
            +    LCAG+L GGKD+C GDSGGPL+          G++S G   CA+   PG+YT+V
Sbjct: 156 -LAATTLCAGILEGGKDTCKGDSGGPLIC----NGQFQGILSVGGNPCAQPRKPGIYTKV 210

Query: 344 TNYIQWIADNIS 355
            +Y  WI   IS
Sbjct: 211 FDYTDWIQSIIS 222

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score =  224 bits (572), Expect = 3e-72
 Identities = 70/265 (26%), Positives = 112/265 (42%), Gaps = 42/265 (15%)

Query: 105 SKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTT 164
           +   V          PW  A+           K    CGG L+ + +VLTAAHC +    
Sbjct: 1   AAPPVQSQVDCENSQPWHVAV-------YRFNKY--QCGGVLLDRNWVLTAAHCYNDK-- 49

Query: 165 GEYEPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKL-----------NDIALFR 212
                Y V +G  +  ED  S     + + I H  +  +              ND+ L R
Sbjct: 50  -----YQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLR 104

Query: 213 LREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTV-FRGPLSPKLRHVQISVVD 271
           L + A ++D+++PI LP       E     T   +GWGST   +      L+ V + ++ 
Sbjct: 105 LSKPADITDVVKPITLP-----TEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLP 159

Query: 272 NPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK- 330
           N  C      +   + + +LCAG + GG  +C  DSGGPL+        + G+ S+G + 
Sbjct: 160 NEDCD---KAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLI----CDGILQGITSWGPEP 212

Query: 331 CAEVGFPGVYTRVTNYIQWIADNIS 355
           C E   P VYT++  +  WI + ++
Sbjct: 213 CGEPTEPSVYTKLIKFSSWIRETMA 237

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score =  222 bits (569), Expect = 3e-72
 Identities = 65/250 (26%), Positives = 100/250 (40%), Gaps = 33/250 (13%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  ++    P+MA++  +             CGG LI   +VLTAAHC+        
Sbjct: 1   IVGGHEAQPHSRPYMASLQMRGNPGSH------FCGGTLIHPSFVLTAAHCLRDIPQRLV 54

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ ++           + +  ++  Y +  KLNDI L +L   A LS  +  +
Sbjct: 55  N---VVLGAHNVRTQEPTQQHFSVAQVFLNN-YDAENKLNDILLIQLSSPANLSASVATV 110

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
            LP     + +     T     GWG      P +  L+ + ++VV               
Sbjct: 111 QLP----QQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTF------------F 154

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVT 344
              + +C  V       C GDSGGPL+        I G+ S+    CA   FP  +TRV 
Sbjct: 155 CRPHNICTFVPRRKAGICFGDSGGPLIC----DGIIQGIDSFVIWGCATRLFPDFFTRVA 210

Query: 345 NYIQWIADNI 354
            Y+ WI   +
Sbjct: 211 LYVDWIRSTL 220

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score =  223 bits (570), Expect = 4e-72
 Identities = 73/262 (27%), Positives = 114/262 (43%), Gaps = 42/262 (16%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG   E+   PW  A+           +   +CGG L+ + +VLTAAHC         
Sbjct: 1   VVGGFNCEKNSQPWQVAV-------YYQKEH--ICGGVLLDRNWVLTAAHCYVDQ----- 46

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKL-----------NDIALFRLRE 215
             Y V +G   L ++  S     + +   H  +  +  +           +D+ L RL +
Sbjct: 47  --YEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSK 104

Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTV-FRGPLSPKLRHVQISVVDNPK 274
            A ++D+++PI LP       E         +GWGS    R      L+ V I+++ N  
Sbjct: 105 PADITDVVKPIALP-----TKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNEN 159

Query: 275 CRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAE 333
           C      Y   + + +LCAG + GGKD+C  DSGGPL+        + G  SYG   C +
Sbjct: 160 CA---KVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLIC----DGILQGTTSYGPVPCGK 212

Query: 334 VGFPGVYTRVTNYIQWIADNIS 355
            G P +YT +  +  WI D + 
Sbjct: 213 PGVPAIYTNLIKFNSWIKDTMM 234

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score =  222 bits (568), Expect = 9e-72
 Identities = 66/252 (26%), Positives = 101/252 (40%), Gaps = 31/252 (12%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           ++GG      +   + A          +      C G LI + +VLTAAHC + +     
Sbjct: 1   VIGGDECNINEHRSLVAF-------FNSTGF--FCSGTLINEEWVLTAAHCDNTN----- 46

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIH-EQYTSARKLNDIALFRLREDAPLSDLIQP 225
             + + +G            +   +   I   +        DI L +L      S+ I P
Sbjct: 47  --FQMKLGVHSKKVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVP 104

Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTV-FRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
           + LP      S         + GWGS    +           I+++D+  C+  +     
Sbjct: 105 LSLP-----SSPPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPEL-- 157

Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRV 343
                 LCAG+L GGKD+CGGDSGGPL+          G+VS+G   C +   PGVYT+V
Sbjct: 158 LTEYRTLCAGILEGGKDTCGGDSGGPLIC----NGQFQGIVSFGAHPCGQGLKPGVYTKV 213

Query: 344 TNYIQWIADNIS 355
            +Y  WI   I+
Sbjct: 214 FDYNHWIQSIIA 225

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score =  221 bits (565), Expect = 2e-71
 Identities = 69/252 (27%), Positives = 110/252 (43%), Gaps = 32/252 (12%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+ G+  +    PW AA+  +  +          CG  L+  +++LTAAHC         
Sbjct: 1   IINGSDCDMHTQPWQAALLLRPNQL--------YCGAVLVHPQWLLTAAHCRK------- 45

Query: 168 EPYIVHVGSIDLEDT--SSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
           + + V +G   L     S     +  + I H  Y+     ND+ L +L      +  ++P
Sbjct: 46  KVFRVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRP 105

Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGA 284
           I +                 V+GWG+T       PK L+ + ISV+   +C      Y  
Sbjct: 106 INVS-----SHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCE---DAYPR 157

Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRV 343
            I++ + CAG    G+DSC GDSGGP++        + G+VS+G   CA    PGVYT +
Sbjct: 158 QIDDTMFCAGD-KAGRDSCQGDSGGPVVC----NGSLQGLVSWGDYPCARPNRPGVYTNL 212

Query: 344 TNYIQWIADNIS 355
             + +WI + I 
Sbjct: 213 CKFTKWIQETIQ 224

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score =  219 bits (560), Expect = 1e-70
 Identities = 79/262 (30%), Positives = 122/262 (46%), Gaps = 42/262 (16%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   E+   PW   +        + G+   +CGG L+  ++VLTAAHC+        
Sbjct: 1   IVGGWECEKHSQPWQVLV-------ASRGRA--VCGGVLVHPQWVLTAAHCIRNK----- 46

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLN-----------DIALFRLRE 215
              ++ +G   L     +G   ++     H  Y  +   N           D+ L RL E
Sbjct: 47  --SVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSE 104

Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPK 274
            A L+D ++ + LP       E     T + +GWGS      L+PK L+ V + V+ N  
Sbjct: 105 PAELTDAVKVMDLP-----TQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDV 159

Query: 275 CRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAE 333
           C Q+   +   + + +LCAG  +GGK +C GDSGGPL+        + G+ S+G + CA 
Sbjct: 160 CAQV---HPQKVTKFMLCAGRWTGGKSTCSGDSGGPLV----CNGVLQGITSWGSEPCAL 212

Query: 334 VGFPGVYTRVTNYIQWIADNIS 355
              P +YT+V +Y +WI D I 
Sbjct: 213 PERPSLYTKVVHYRKWIKDTIV 234

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score =  217 bits (555), Expect = 7e-70
 Identities = 76/263 (28%), Positives = 120/263 (45%), Gaps = 43/263 (16%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   E+   PW AA+         +      CGG L+ +++VLTAAHC+S +     
Sbjct: 1   IVGGWECEQHSQPWQAAL------YHFSTF---QCGGILVHRQWVLTAAHCISDN----- 46

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKL-----------NDIALFRLRE 215
             Y + +G  +L +D ++   + +     H  +  +              +D+ L RL E
Sbjct: 47  --YQLWLGRHNLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTE 104

Query: 216 DAP-LSDLIQPICLPYDTNLRSELFERKTPFVAGWGST-VFRGPLSPKLRHVQISVVDNP 273
            A  ++D ++ + LP       E     T   +GWGS           L+ V + ++ N 
Sbjct: 105 PADTITDAVKVVELP-----TEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPND 159

Query: 274 KCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CA 332
           +C+     +   + + +LC G L GGKD+C GDSGGPLM        + GV S+G   C 
Sbjct: 160 ECK---KAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPLM----CDGVLQGVTSWGYVPCG 212

Query: 333 EVGFPGVYTRVTNYIQWIADNIS 355
               P V  RV +Y++WI D I+
Sbjct: 213 TPNKPSVAVRVLSYVKWIEDTIA 235

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score =  216 bits (552), Expect = 2e-69
 Identities = 76/262 (29%), Positives = 112/262 (42%), Gaps = 44/262 (16%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   E+   PW  A+             E++CGG LI   +V+TAAHC S +     
Sbjct: 1   IVGGYKCEKNSQPWQVAV-----------INEYLCGGVLIDPSWVITAAHCYSNN----- 44

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKL-----------NDIALFRLRE 215
             Y V +G  +L +D        + +   H  Y                 ND+ L  L E
Sbjct: 45  --YQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSE 102

Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPK 274
            A ++  ++ I LP       E     T   +GWGST     +    L+ V I ++ N K
Sbjct: 103 PADITGGVKVIDLP-----TKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEK 157

Query: 275 CRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAE 333
           C      Y   + + +LCAG + GGKD+C GDSGGPL+        + G+ S G   CA+
Sbjct: 158 CI---ETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLI----CDGVLQGITSGGATPCAK 210

Query: 334 VGFPGVYTRVTNYIQWIADNIS 355
              P +Y ++  +  WI   + 
Sbjct: 211 PKTPAIYAKLIKFTSWIKKVMK 232

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score =  215 bits (551), Expect = 3e-69
 Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 42/262 (16%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG   E+   PW  A+          G     CGG L+  ++VLTAAHC+S D     
Sbjct: 1   IIGGWECEKHSKPWQVAV-------YHQGHF--QCGGVLVHPQWVLTAAHCMSDD----- 46

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKL-----------NDIALFRLRE 215
             Y + +G  +L +D  +    ++    +  Q+  +              +D+ L RL +
Sbjct: 47  --YQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQ 104

Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST-VFRGPLSPKLRHVQISVVDNPK 274
            A ++D ++ + LP       E     T + +GWG    F    S  L+ V++ +  N K
Sbjct: 105 PARITDAVKILDLP-----TQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEK 159

Query: 275 CRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAE 333
           C      Y   + E +LCA         C GDSGG L+          G+ S+G  +CA+
Sbjct: 160 CA---RAYPEKMTEFVLCATHRDDSGSICLGDSGGALI----CDGVFQGITSWGYSECAD 212

Query: 334 VGFPGVYTRVTNYIQWIADNIS 355
                V+T+V  + +WI + I 
Sbjct: 213 FNDNFVFTKVMPHKKWIKETIE 234

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score =  214 bits (548), Expect = 7e-69
 Identities = 71/253 (28%), Positives = 108/253 (42%), Gaps = 35/253 (13%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+ G        PW AA+           +   +CGG L+  R+VLTAAHC         
Sbjct: 1   ILEGRECIPHSQPWQAAL-------FQGERL--ICGGVLVGDRWVLTAAHCKK------- 44

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKL---NDIALFRLREDAPLSDLI 223
           + Y V +G   L         I++ + I H  Y ++      +DI L RL+  A L D +
Sbjct: 45  QKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKV 104

Query: 224 QPICLPYDTNLRSELFERKTPFVAGWGST-VFRGPLSPKLRHVQISVVDNPKCRQIFSNY 282
           +P+ L             +   ++GWG+    +      L   ++ +    KC      Y
Sbjct: 105 KPVQLA-----NLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCE---RAY 156

Query: 283 GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYT 341
              I E ++CAG  S G D+C GDSGGPL+        + G+ S+G   C +   PGVYT
Sbjct: 157 PGKITEGMVCAGS-SNGADTCQGDSGGPLV----CDGMLQGITSWGSDPCGKPEKPGVYT 211

Query: 342 RVTNYIQWIADNI 354
           ++  Y  WI   +
Sbjct: 212 KICRYTTWIKKTM 224

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score =  221 bits (564), Expect = 4e-68
 Identities = 62/348 (17%), Positives = 116/348 (33%), Gaps = 71/348 (20%)

Query: 53  LEGRLPKVCCPQHTLTNDQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGT 112
           L     K    +H           +   +            +  CGV         +   
Sbjct: 180 LNELGSKKDGERHAFILQDTKALHQVFEHMLDV----SKLTDTICGV-------GNMSAN 228

Query: 113 PSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIV 172
            S++ + PW   I       +   +    C GALI+ ++VLTAAHC       ++  + V
Sbjct: 229 ASDQERTPWHVTI-------KPKSQE--TCRGALISDQWVLTAAHCF--RDGNDHSLWRV 277

Query: 173 HVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL---------NDIALFRLREDAPLSDLI 223
           +VG         G    IE+ +I   +    K          +DIAL +L +   +S   
Sbjct: 278 NVGDPKS---QWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHA 334

Query: 224 QPICLP--YDTNLRSELFERKTPFVAGWGSTVFRGPLSP--KLRHVQISV-----VDNPK 274
           +PICLP   + NL     +  T           +   +    L   ++++     V+   
Sbjct: 335 RPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTS 394

Query: 275 CRQIFSN----------YGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGV 324
           C ++ S               + +  LC+G     +  C G+SGG +      +++ +G+
Sbjct: 395 CAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQ-EDESPCKGESGGAVFLERRFRFFQVGL 453

Query: 325 VSYGKKCAEVG-----------------FPGVYTRVTNYIQWIADNIS 355
           VS+G     +G                     +  +     W+  ++ 
Sbjct: 454 VSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLG 501

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score =  210 bits (537), Expect = 4e-64
 Identities = 73/383 (19%), Positives = 124/383 (32%), Gaps = 78/383 (20%)

Query: 22  SIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTNDQPTTTTRRPNN 81
            IR   Y+      +R NPR   Y+     G+   + +V         D      +  + 
Sbjct: 137 EIRDLLYI----GKDRKNPRE-DYLDVYVFGVGPLVNQVNINALASKKDNEQHVCKVKDM 191

Query: 82  RNGAFTKLPSPDNNE----CGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGK 137
                      D ++    CG+              ++  + PW A I           K
Sbjct: 192 ECLEDVFYQMIDESQSLSLCGM-------VWEHRKGTDYHKQPWQAKI-----SVIRPSK 239

Query: 138 PEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHE 197
               C GA++++ +VLTAAHC + D   E+    V VG            +EIE  + H 
Sbjct: 240 GHESCMGAVVSEYFVLTAAHCFTVDD-KEHS-IKVSVGGEK-------RDLEIEVVLFHP 290

Query: 198 QYTSARKL---------NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAG 248
            Y    K           D+AL +L+        I+PICLP            + P    
Sbjct: 291 NYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP---CTEGTTRALRLPPTTT 347

Query: 249 WGST------------VFRGPLSPKLRHVQISVVDNPKCRQ------------IFSNYGA 284
                           +F      KL   ++ + +  K                  +   
Sbjct: 348 CQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISE 407

Query: 285 TINENILCAGVLSG--GKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CAEVG----- 335
            +    LC G +S     ++C GDSGGPL+    +++  +GV+S+G    C         
Sbjct: 408 VVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQV 467

Query: 336 ---FPGVYTRVTNYIQWIADNIS 355
                  +  +   + W+ + + 
Sbjct: 468 PAHARDFHINLFQVLPWLKEKLQ 490

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score =  203 bits (517), Expect = 2e-59
 Identities = 81/261 (31%), Positives = 119/261 (45%), Gaps = 24/261 (9%)

Query: 97  CGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAA 156
             V       R+VGG  +    WPW  ++  +             CGG LI+  +VLTAA
Sbjct: 551 PQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMH--------FCGGTLISPEWVLTAA 602

Query: 157 HCVSPDTTGEYEPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLRE 215
           HC+  + +     Y V +G+    +       IE+ R  +           DIAL +L  
Sbjct: 603 HCL--EKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTR------KDIALLKLSS 654

Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPK 274
            A ++D + P CLP      + +   +T  F+ GWG T      +  L+  Q+ V++N  
Sbjct: 655 PAVITDKVIPACLPS----PNYVVADRTECFITGWGETQ-GTFGAGLLKEAQLPVIENKV 709

Query: 275 CRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV 334
           C +        +    LCAG L+GG DSC GDSGGPL+     KY + GV S+G  CA  
Sbjct: 710 CNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARP 768

Query: 335 GFPGVYTRVTNYIQWIADNIS 355
             PGVY RV+ ++ WI   + 
Sbjct: 769 NKPGVYVRVSRFVTWIEGVMR 789

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score =  191 bits (487), Expect = 3e-55
 Identities = 59/304 (19%), Positives = 101/304 (33%), Gaps = 63/304 (20%)

Query: 93  DNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYV 152
             + CG+              ++  + PW A I           K    C GA++++ +V
Sbjct: 449 SLSLCGM-------VWEHRKGTDYHKQPWQAKI-----SVIRPSKGHESCMGAVVSEYFV 496

Query: 153 LTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL------- 205
           LTAAHC       +     V VG            +EIE  + H  Y    K        
Sbjct: 497 LTAAHCF--TVDDKEHSIKVSVGGEK-------RDLEIEVVLFHPNYNINGKKEAGIPEF 547

Query: 206 --NDIALFRLREDAPLSDLIQPICLP-YDTNLRSELFERKTP-FVAGWGST-------VF 254
              D+AL +L+        I+PICLP  +   R+      T                 +F
Sbjct: 548 YDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALF 607

Query: 255 RGPLSPKLRHVQISVVDNPKC------------RQIFSNYGATINENILCAGVLSG--GK 300
                 KL   ++ + +  K                  +    +    LC G +S     
Sbjct: 608 VSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADP 667

Query: 301 DSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA----------EVGFPGVYTRVTNYIQWI 350
           ++C GDSGGPL+    +++  +GV+S+G                     +  +   + W+
Sbjct: 668 NTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWL 727

Query: 351 ADNI 354
            + +
Sbjct: 728 KEKL 731

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score =  149 bits (380), Expect = 8e-45
 Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 16/154 (10%)

Query: 206 NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST---VFRGPLSPKL 262
           +D+ L RL+  A ++D ++ + LP       E     T   +GWGS            ++
Sbjct: 8   HDLMLLRLQSPAKITDAVKVLELP-----TQEPELGSTCEASGWGSIEPGPDDFEFPDEI 62

Query: 263 RHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYII 322
           + VQ++++ N  C      +   + E++LCAG L GGKD+C GDSGGPL+          
Sbjct: 63  QCVQLTLLQNTFCA---DAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLIC----NGMWQ 115

Query: 323 GVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNIS 355
           G+ S+G   C     P +YT++  Y+ WI D I+
Sbjct: 116 GITSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score =  129 bits (327), Expect = 3e-37
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 20/147 (13%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IV G  +  G WPW  ++      +   G     CGG+LI + +V+TAAHC    +    
Sbjct: 1   IVNGEEAVPGSWPWQVSL------QDKTGFH--FCGGSLINENWVVTAAHCGVTTS---- 48

Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
              +V  G  D   +S     ++I +   + +Y S    NDI L +L   A  S  +  +
Sbjct: 49  --DVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAV 106

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGST 252
           CLP      S+ F   T     GWG T
Sbjct: 107 CLPS----ASDDFAAGTTCVTTGWGLT 129

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... Length = 97

 Score =  125 bits (317), Expect = 4e-36
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 5/100 (5%)

Query: 256 GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL 315
                +L+   + ++ N  C++    +G  I + ++CAG  + G  SC GDSGGPL+   
Sbjct: 1   ANTPDRLQQASLPLLSNTNCKKY---WGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKK 55

Query: 316 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
           +  + ++G+VS+G        PGVY RVT  + W+   ++
Sbjct: 56  NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 95

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215

 Score = 86.6 bits (214), Expect = 4e-20
 Identities = 37/240 (15%), Positives = 72/240 (30%), Gaps = 41/240 (17%)

Query: 117 GQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGS 176
              P+ +     I      G     C G LI    +LT  HCV    +  Y         
Sbjct: 15  RVAPYNS-----IAYITFGGS---SCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPG 66

Query: 177 IDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRS 236
           ++     +G +   E  +      +     D A+ +      + + +    +   TNL  
Sbjct: 67  MNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDT--NIGNTVGYRSIRQVTNLTG 124

Query: 237 ELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVL 296
                 T  ++G+                     D  +     S +  + +       + 
Sbjct: 125 T-----TIKISGYPG-------------------DKMRSTGKVSQWEMSGSVTREDTNLA 160

Query: 297 SGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN-YIQWIADNIS 355
               D+  G+SG  +   LD    I+GV + G      G      + T  ++++I    +
Sbjct: 161 YYTIDTFSGNSGSAM---LDQNQQIVGVHNAGYSN---GTINGGPKATAAFVEFINYAKA 214

>2ikd_A Prophenoloxidase activating proteinase-2; beta-sheet, double helix, hydrolase; NMR {Manduca sexta} Length = 66

 Score = 77.3 bits (190), Expect = 2e-18
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query: 10 CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCP 63
          C+ P N+ GTC S+ QC     I++ +    +  ++++ S CG +G+ PKVCCP
Sbjct: 13 CTLPNNDKGTCKSLLQCDVASKIISKKPRTAQDEKFLRESACGFDGQTPKVCCP 66

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A Length = 80

 Score = 76.4 bits (189), Expect = 6e-18
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 17/93 (18%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG   E+   PW  AI      +         CGG L+  ++VLTAAHC + +     
Sbjct: 1   IIGGRECEKNSHPWQVAIYHYSSFQ---------CGGVLVNPKWVLTAAHCKNDN----- 46

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQY 199
             Y V +G  +L E+ ++     +     H  +
Sbjct: 47  --YEVWLGRHNLFENENTAQFFGVTADFPHPGF 77

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica} Length = 218

 Score = 68.2 bits (166), Expect = 2e-13
 Identities = 33/214 (15%), Positives = 60/214 (28%), Gaps = 33/214 (15%)

Query: 119 WPWMAAIGFKIRRRRANGKPEWMCGGALIT---KRYVLTAAHCVSPDTTGEYEPYIVHVG 175
            P +  + F         + +++C   ++    +  V TA HC+     G++    V   
Sbjct: 6   SPHIGKVFFS------TNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAP 59

Query: 176 SIDLEDTSSGVSIEIERPIIHEQYT-SARKLNDIALFRLREDAPLSDLIQPICLPYDTNL 234
           + D  ++  GV    E  +   ++       +D A   L                     
Sbjct: 60  AYDYGESEHGV-WAAEELVTSAEWANRGDFEHDYAFAVLETKGG---------------- 102

Query: 235 RSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAG 294
                      V       F  P                  +++ S +G T   + + + 
Sbjct: 103 -----TTVQQQVGTASPIAFNQPRGQYYSAYGYPAAAPFNGQELHSCHG-TATNDPMGSS 156

Query: 295 VLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG 328
                 +  GG SGGP      T        SYG
Sbjct: 157 TQGIPCNMTGGSSGGPWFLGNGTGGAQNSTNSYG 190

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 39/231 (16%)

Query: 118 QWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSI 177
              + A + + I+     G   ++  G ++ K  +LT  H V       +        +I
Sbjct: 16  NGHY-APVTY-IQVEAPTG--TFIASGVVVGKDTLLTNKHVVDATHGDPHA-LKAFPSAI 70

Query: 178 DLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSE 237
           + ++  +G           EQ T      D+A+ +   +     + + +           
Sbjct: 71  NQDNYPNGGFTA-------EQITKYSGEGDLAIVKFSPNEQNKHIGEVV----------- 112

Query: 238 LFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS 297
                 P      +               I+V   P  + + + + +      L    + 
Sbjct: 113 -----KPATMSNNAETQVN--------QNITVTGYPGDKPVATMWESKGKITYLKGEAMQ 159

Query: 298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQ 348
               + GG+SG P+    + K  +IG+   G      G   +   V N+++
Sbjct: 160 YDLSTTGGNSGSPV---FNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLK 207

>2ike_A Prophenoloxidase activating proteinase-2; beta-sheet, double helix, hydrolase; NMR {Manduca sexta} Length = 54

 Score = 45.5 bits (107), Expect = 5e-07
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 10 CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCC 62
          C TP N+ G C++I++C +L +I  +         Y+KNS C        VCC
Sbjct: 3  CLTPDNKPGKCVNIKKCTHLAEIEEDP-IGEDETTYLKNSVCA-GPEDNSVCC 53

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 46.7 bits (110), Expect = 5e-06
 Identities = 17/122 (13%), Positives = 44/122 (36%), Gaps = 15/122 (12%)

Query: 118 QWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSI 177
              + A +   I+     G   ++  G ++ K  +LT  H V       +        +I
Sbjct: 16  NGHY-APVT-YIQVEAPTG--TFIASGVVVGKDTLLTNKHVVDATHGDPHA-LKAFPSAI 70

Query: 178 DLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRED---APLSDLIQPICLPYDTNL 234
           + ++  +G           EQ T      D+A+ +   +     + ++++P  +  +   
Sbjct: 71  NQDNYPNGG-------FTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAET 123

Query: 235 RS 236
           ++
Sbjct: 124 QT 125

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A* Length = 268

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 39/223 (17%), Positives = 62/223 (27%), Gaps = 43/223 (19%)

Query: 140 WMCGGALIT------KRYVLTAAHCVSPDTTGEYEPYIV-------HVGSIDLEDTSSGV 186
             C G+L+       K Y LTA HC    T       +V          + +   + +  
Sbjct: 34  LACTGSLVNNTANDRKMYFLTAHHCGM-GTASTAASIVVYWNYQNSTCRAPNTPASGANG 92

Query: 187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFV 246
              + +        +    +D  L  L   A  +                        F 
Sbjct: 93  DGSMSQTQSGSTVKATYATSDFTLLELNNAANPA---------------------FNLFW 131

Query: 247 AGWGSTVFRGPLSPKLRH--VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCG 304
           AGW       P +  + H  V    + N      F  +G       L       G  +  
Sbjct: 132 AGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEP 191

Query: 305 GDSGGPLMYPLDTKYYIIGVVSYGK-KCAEVG--FPGVYTRVT 344
           G SG P+      +  ++G +  G   C+  G      Y RV 
Sbjct: 192 GSSGSPIY---SPEKRVLGQLHGGPSSCSATGTNRSDQYGRVF 231

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	355
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	100.0
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	100.0
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	100.0
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	100.0
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	100.0
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	100.0
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	100.0
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	100.0
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	100.0
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	100.0
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	100.0
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	100.0
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	100.0
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	100.0
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	100.0
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	100.0
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	100.0
1aut_C	250	Activated protein C; serine proteinase, plasma cal	100.0
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	100.0
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	100.0
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	100.0
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	100.0
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	100.0
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	100.0
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	100.0
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	100.0
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	100.0
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	100.0
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	100.0
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	100.0
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	100.0
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	100.0
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	100.0
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	100.0
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	100.0
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	100.0
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	100.0
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	100.0
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	100.0
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	100.0
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	100.0
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	100.0
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	100.0
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	100.0
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	100.0
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	100.0
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	100.0
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	100.0
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	100.0
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	100.0
1md8_A	329	C1R complement serine protease; innate immunity, a	100.0
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	100.0
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	100.0
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	100.0
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	100.0
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	100.0
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	100.0
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	100.0
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	100.0
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	100.0
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	100.0
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	100.0
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	100.0
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	100.0
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	100.0
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	100.0
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	100.0
1elv_A	333	Complement C1S component; trypsin-like serin prote	100.0
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	100.0
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	100.0
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	100.0
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	100.0
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	100.0
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	100.0
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	100.0
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	100.0
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	100.0
1gpz_A	399	Complement C1R component; hydrolase, activation, i	100.0
2aiq_A	231	Protein C activator; snake venom serine proteinase	100.0
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	100.0
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	100.0
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	100.0
1a7s_A	225	Heparin binding protein; serine protease homolog,	100.0
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	100.0
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	100.0
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	100.0
2xrc_A	565	Human complement factor I; immune system, hydrolas	100.0
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	100.0
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	100.0
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	100.0
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	100.0
3hrz_D	741	Complement factor B; serine protease, glycosilated	100.0
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	100.0
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	100.0
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	100.0
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	100.0
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.98
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.98
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	99.97
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	99.97
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	99.97
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	99.96
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	99.93
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	99.93
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	99.93
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	99.92
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.89
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	99.84
3k6y_A	237	Serine protease, possible membrane-associated seri	99.76
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	99.72
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	99.71
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.69
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.68
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	99.63
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	99.62
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.6
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.57
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	99.53
1hpg_A	187	Glutamic acid specific protease; serine protease,	99.52
2ikd_A	66	Prophenoloxidase activating proteinase-2; beta-she	99.52
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	99.4
2ike_A	54	Prophenoloxidase activating proteinase-2; beta-she	99.38
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.35
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.16
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	99.12
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.11
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	98.99
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.85
1wxr_A	1048	Haemoglobin protease; hemoglobine protease, autotr	98.41
2w5e_A	163	Putative serine protease; coiled coil, transmembra	98.39
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	98.31
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	98.3
1zyo_A	191	Serine protease; beta-barrel, glutamyl endopeptida	98.18
3syj_A	1011	Adhesion and penetration protein autotransporter;	96.64
1mbm_A	198	NSP4 proteinase, chymotrypsin-like serine protease	95.98
3fan_A	213	Non-structural protein; chymotrypsin-like, N-termi	95.02
3sze_A	968	Serine protease ESPP; parallel beta-helix, hydrola	94.64
3mmg_A	241	Nuclear inclusion protein A; 3C-type protease, TEV	93.18
1lvm_A	229	Catalytic domain of the nuclear inclusion protein	91.29
4ash_A	185	NS6 protease; hydrolase, trypsin-like, calicivirus	86.23
3h09_A	989	IGA1 protease, immunoglobulin A1 protease; serine	84.65

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=100.00  E-value=2.9e-69  Score=512.58  Aligned_cols=321  Identities=31%  Similarity=0.663  Sum_probs=262.9

Q ss_pred             CCCCCCCCCCCcceEeecccCHHHHHHhhc-C----CCChhhhhccccccccCCCCCceeeCCCCCCCCCCCCccccCCC
Q psy2626           6 DDSLCSTPRNEIGTCISIRQCRYLYDILNN-E----RNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTNDQPTTTTRRPN   80 (355)
Q Consensus         6 ~~~~C~~~~~~~g~C~~~~~C~~~~~~~~~-~----~~~~~~~~~~~~~~C~~~~~~~~vCC~~~~~~~~~~~~~~~~~~   80 (355)
                      +++.|.+|++..|+||++++|+.+.+++++ .    .+++++++|++.++|++.+..++||||.....   ..+ .    
T Consensus        28 ~~~~C~~~~~~~G~Cv~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~vCCp~~~~~---~~~-~----   99 (408)
T 2xxl_A           28 YADDCTTPDGDQGQCMPFSSCRTIEERLTEAQKAGQKVPADYASYLQKALCGEFNGVRHFCCPSANIQ---HNS-K----   99 (408)
T ss_dssp             TTCEEECTTSCEEEEEEGGGBHHHHHHHHHHHHTTSCCCHHHHHHHHHHEEEEETTEEEEEEEGGGBC---SCH-H----
T ss_pred             cCCCCcCCCCCceEeeeHHHChhHHHHHhhcccccccCCHHHHhhhhhCcCCCCCCCEEEEeCCCCCC---CCC-c----
Confidence            457899999999999999999999998876 4    56788889999999998777889999952110   000 0    


Q ss_pred             CCCCCCccCCCCCCCCCCCCCcCCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccC
Q psy2626          81 NRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVS  160 (355)
Q Consensus        81 ~~~~~~~~~~~~~~~~CG~~~~~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~  160 (355)
                          ....+|... ..||..   ...||+||.+|..++|||||+|.+...     +...++||||||+++||||||||+.
T Consensus       100 ----~~~~l~~~~-~~CG~~---~~~rIvgG~~a~~~e~Pw~v~L~~~~~-----g~~~~~CGGsLIs~~~VLTAAHCv~  166 (408)
T 2xxl_A          100 ----VMSLFKDEN-FDCGNF---LSQRVSNGYEVKLSSRPWMALLRYQQF-----GESRFLCGGAMISERYILTAAHCVH  166 (408)
T ss_dssp             ----HHHHHTCTT-CCCSCC---CCCCCCSSCBCCTTSSTTEEEEEEECS-----SSEEEEEEEEEEETTEEEECGGGTT
T ss_pred             ----ccccCCCCc-cccCCC---CCCceECCEECCCCCCCcEEEEEeecC-----CceeEEEEEEEEECCEEEEcHHhcC
Confidence                001233221 179943   568999999999999999999987531     2236899999999999999999997


Q ss_pred             CCCCCCcCceEEEeccccccCCC-------------CcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccc
Q psy2626         161 PDTTGEYEPYIVHVGSIDLEDTS-------------SGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC  227 (355)
Q Consensus       161 ~~~~~~~~~~~v~~G~~~~~~~~-------------~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~pic  227 (355)
                      ..   ....+.|++|++++....             ..+.+.|+++++||+|+.....||||||||++|+.|+++|+|||
T Consensus       167 ~~---~~~~~~V~lG~~~~~~~~~~~~~~~~~~c~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~~v~~~~~V~PIC  243 (408)
T 2xxl_A          167 GL---QNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPIC  243 (408)
T ss_dssp             TC---TTTEEEEEESCSBTTCSCCEEEETTEEEECCCCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCBTTBCCCB
T ss_pred             CC---CCceEEEEeeeeECCCccchhhcccccccCCceEEEeEEEEEeCCCCCccccccceEEEEECCccccccCccccC
Confidence            52   235688999999876542             35789999999999999988899999999999999999999999


Q ss_pred             cCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCC
Q psy2626         228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDS  307 (355)
Q Consensus       228 Lp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDs  307 (355)
                      ||...........+..++++|||.+..+. .+..|+++.+++++.+.|+..|..   .+..+||||+... +.++|+|||
T Consensus       244 Lp~~~~~~~~~~~~~~~~v~GWG~t~~~~-~s~~L~~~~v~iv~~~~C~~~~~~---~~~~~~iCAg~~~-g~d~C~GDS  318 (408)
T 2xxl_A          244 LPITDELKEKAEQISTYFVTGWGTTENGS-SSDVLLQANVPLQPRSACSQAYRR---AVPLSQLCVGGGD-LQDSCKGDS  318 (408)
T ss_dssp             CCCSHHHHHHTTTCSEEEEEECCCBTTBC-SCSBCEEEEEEEECHHHHHHHHTS---CCCTTEEEECCSC-SSSGGGSCT
T ss_pred             CCCcccccccccCCCEEEEEEeCcCCCCC-CCchheEeeeeecCHHHHHHHhcc---cCCCceEeecCCC-CCccCCCcc
Confidence            99764322224567889999999987655 688999999999999999998864   2556999999765 789999999


Q ss_pred             CCcc------eeeeCCeEEEEEEEEeC-CCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         308 GGPL------MYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       308 GgPL------~~~~~~~~~lvGI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      ||||      ++..+++|+|+||+||| ..|+..+.|+|||||++|++||+++|+
T Consensus       319 GGPL~~~~~~~~~~~~~~~l~GIvS~G~~~Cg~~~~PgVYTrVs~y~~WI~~~i~  373 (408)
T 2xxl_A          319 GGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMA  373 (408)
T ss_dssp             TCEEEEEECCTTCSSCEEEEEEEEEECCCCTTSCCCCEEEEEGGGGHHHHHHHHH
T ss_pred             cChhhcCccceEEECCEEEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            9999      66556799999999999 679988899999999999999999873

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=100.00  E-value=6.8e-66  Score=487.34  Aligned_cols=332  Identities=28%  Similarity=0.544  Sum_probs=250.9

Q ss_pred             ccCCCCCCCC-CCCcceEeecccCHHHHHH-hhcCCCCh-----hhhhccccccccCCCCCceeeCCCCCCCCCCCCccc
Q psy2626           4 YYDDSLCSTP-RNEIGTCISIRQCRYLYDI-LNNERNNP-----RAVQYVKNSHCGLEGRLPKVCCPQHTLTNDQPTTTT   76 (355)
Q Consensus         4 ~~~~~~C~~~-~~~~g~C~~~~~C~~~~~~-~~~~~~~~-----~~~~~~~~~~C~~~~~~~~vCC~~~~~~~~~~~~~~   76 (355)
                      +..++.|.+| +++.|.||++.+|+++... +++..++.     .+++|++ ++|+   ..+.||||..........++.
T Consensus        31 ~~~~~~C~~~~~~~~g~Cv~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~---~~~~vCC~~~~~~~~~~~~~~  106 (394)
T 2b9l_A           31 LTALPRCGTGADQGKKVCIVYHRCDGVTNTVTPEEVINTTGEGIFDIRENA-NECE---SYLDVCCGLPEGGVLPTPSPT  106 (394)
T ss_dssp             GGGSCEECCGGGTTTEEEEEGGGBCTTTCBBCSSCCCCCSSCCEEECSTTS-SSSS---STTEEEEBCC-----------
T ss_pred             cccCCCCCCCCCCcceEEeCHHHCcccccceeeccccCCcccceeeeeecc-ccCC---CCCceECCCCCcCCCCCcCCC
Confidence            3355789998 6789999999999987653 33332222     3455654 6897   357899995432211111000


Q ss_pred             cCCCCCCCCCccCCCCCCCCCCCCCcC-CCCceecC-eecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEe
Q psy2626          77 RRPNNRNGAFTKLPSPDNNECGVNAFN-SSKRIVGG-TPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT  154 (355)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~CG~~~~~-~~~ri~gG-~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLT  154 (355)
                        +.       ..+......||..... ...||+|| .+|..++|||||+|++.... ...+...++||||||+++||||
T Consensus       107 --~~-------~~~~~~~~~CG~~~~~~~~~rIvgG~~~a~~~e~PW~v~l~~~~~~-~~~~~~~~~CGGsLIs~~~VLT  176 (394)
T 2b9l_A          107 --PP-------VVPVLKPSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVI-PGSGEEQLVCGGSLIAPSVVLT  176 (394)
T ss_dssp             ---C-------CCCCCCCCCTTBCCTTCSSCEEESCSSBCCTTSSTTEEEEEECC-------CCSEEEEEEEEETTEEEE
T ss_pred             --CC-------ccCCCCCCCCCCCCCCCCCceeeCCccccCCCCCCcEEEEeecccc-ccccccceEeeEEEEeCCEEEe
Confidence              00       0111123389987532 24699999 89999999999999765320 0012346899999999999999


Q ss_pred             eccccCCCCCCCcCceEEEeccccccCCC---CcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCC
Q psy2626         155 AAHCVSPDTTGEYEPYIVHVGSIDLEDTS---SGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYD  231 (355)
Q Consensus       155 AAhCv~~~~~~~~~~~~v~~G~~~~~~~~---~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~  231 (355)
                      ||||+.... .....+.|++|++++....   ..+.+.|+++++||+|+.....||||||||++|+.|+++|+|||||..
T Consensus       177 AAHCv~~~~-~~~~~~~V~~G~~~~~~~~~~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~pv~~~~~v~PicLp~~  255 (394)
T 2b9l_A          177 GAHCVNSYQ-SNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQ  255 (394)
T ss_dssp             CHHHHGGGT-TCGGGEEEEESCCBTTCCCSSSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCBCCTTCCCCBCCCT
T ss_pred             ccceecCCC-CCcccEEEEeceeeccCCcCCCccEEEEEEEEEECCCCCCCccccceEEEEecCccccCCceeeeEcCCc
Confidence            999997521 1235688999999876543   358899999999999999888999999999999999999999999976


Q ss_pred             CCccccccCCCceEEEEeccCCCCC--CCCccceEEEEeeeChhHHHhhhhcC----CCCCCCCeEEecccCCCCCCCcC
Q psy2626         232 TNLRSELFERKTPFVAGWGSTVFRG--PLSPKLRHVQISVVDNPKCRQIFSNY----GATINENILCAGVLSGGKDSCGG  305 (355)
Q Consensus       232 ~~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~~~Ca~~~~~~~~~C~G  305 (355)
                      ..    ...+..++++|||.+..+.  ..+..|+++.+++++.++|+..+...    ...+.++||||+... +.++|+|
T Consensus       256 ~~----~~~~~~~~v~GWG~t~~~~~~~~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~i~~~~iCAg~~~-g~d~C~G  330 (394)
T 2b9l_A          256 SQ----IFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQ-GKDTCTG  330 (394)
T ss_dssp             TC----CCCCSCEEEEECCTTTTTCTTSSCCBCEEEEECEECHHHHHHHHHTTTTCTTCCCCTTEEEECCBS-SCSCCSS
T ss_pred             cc----CccCCEEEEEeccCccCCCCCcccccceEEEEEEECHHHHHHHHhhcccccceecCCCEEEeeCCC-CCcCCCC
Confidence            43    2456889999999987543  35688999999999999999987642    125789999998754 7899999


Q ss_pred             CCCCcceeee---CCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         306 DSGGPLMYPL---DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       306 DsGgPL~~~~---~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      ||||||++..   +++|+|+||+|||.+|+..+.|+|||||++|++||+++|+
T Consensus       331 DSGGPLv~~~~~~~~~~~lvGIvS~G~~C~~~~~PgVYT~V~~y~~WI~~~i~  383 (394)
T 2b9l_A          331 DGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQ  383 (394)
T ss_dssp             CTTCEEEEEETTEEEEEEEEEEESCTTCCCBSSSCEEEEEGGGGHHHHHHHHH
T ss_pred             CcchhhEEEEcCCCCeEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHH
Confidence            9999999963   4689999999999999988899999999999999999873

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=100.00  E-value=2.1e-59  Score=425.20  Aligned_cols=249  Identities=35%  Similarity=0.715  Sum_probs=210.5

Q ss_pred             CCCCCCcCCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCC-CCCcCceEEEe
Q psy2626          96 ECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDT-TGEYEPYIVHV  174 (355)
Q Consensus        96 ~CG~~~~~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~-~~~~~~~~v~~  174 (355)
                      .||...  ...||+||.+|.+++|||||+|.+...    .+...++|+||||+++||||||||+.... ........|++
T Consensus        13 ~CG~~~--~~~rIvgG~~a~~~~~Pw~v~l~~~~~----~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~V~~   86 (278)
T 2olg_A           13 DCGYQV--EADKILNGDDTVPEEFPWTAMIGYKNS----SNFEQFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRL   86 (278)
T ss_dssp             SCSCCC--CCCCSCCSSBCCTTSSTTEEEEEEECT----TCCEEEEEEEEECSSSEEEECGGGTSTHHHHHTCEEEEEEE
T ss_pred             HhCCCC--CCCceECCEECCCCCCCceEEEEEecC----CCCcceeEEEEEEeCCEEEEhHHhCCCcccccccceeEEEe
Confidence            899863  468999999999999999999987542    22336899999999999999999996410 01123578999


Q ss_pred             ccccccCCC------------CcEEEEEeeeEeCCCCCCCCC--CCCeEEEEeCCCCCCCCCccccccCCCCCccccccC
Q psy2626         175 GSIDLEDTS------------SGVSIEIERPIIHEQYTSARK--LNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFE  240 (355)
Q Consensus       175 G~~~~~~~~------------~~~~~~v~~i~~hp~y~~~~~--~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~  240 (355)
                      |+++.....            ..+.+.|+++++||+|+....  .||||||||++|+.|+++|+|||||....   ....
T Consensus        87 G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~---~~~~  163 (278)
T 2olg_A           87 GEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNE---EVQV  163 (278)
T ss_dssp             SCSBTTCSSCEETTTTEECSSCCEEECEEEEEECTTCCTTCSSCTTCCEEEEESSCCCCCSSCCCCBCCCTTC---CCCT
T ss_pred             CcccCCCCccccccccccCCCCceEEeeEEEEECCCCcCCCCCCCCeEEEEEECCCCcCCCCcCccCcCCCCC---CcCC
Confidence            998876532            367889999999999987765  69999999999999999999999997653   3457


Q ss_pred             CCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceee-eCCeE
Q psy2626         241 RKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP-LDTKY  319 (355)
Q Consensus       241 ~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~-~~~~~  319 (355)
                      +..++++|||.+..+. .+..|+++.+++++.+.|+..+...+..+.++||||+... +.++|+|||||||++. .+++|
T Consensus       164 g~~~~v~GWG~t~~~~-~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~Ca~~~~-~~~~C~GDSGGPL~~~~~~~~~  241 (278)
T 2olg_A          164 GQRLTVVGWGRTETGQ-YSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEK-AKDSCGGDSGGPLLAERANQQF  241 (278)
T ss_dssp             TCEEEEEESCCSSSCC-CCSBCEEEEEEBCCGGGGGGGGSSTTCCCCTTEEEECCTT-CTTCCCCCTTCEEEEEEGGGEE
T ss_pred             CCEEEEEcCCcCCCCC-ccchhhcccccccCHHHHHHHhccccccCCCceEeeecCC-CCeeCCCccCcceEEEcCCCcE
Confidence            8899999999987644 6788999999999999999988654446889999998755 6899999999999997 56889


Q ss_pred             EEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         320 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       320 ~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      +|+||+|||..|+..+.|+|||||+.|++||+++|+
T Consensus       242 ~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  277 (278)
T 2olg_A          242 FLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNIR  277 (278)
T ss_dssp             EEEEEEEECCBCSTTCBCEEEEEGGGGHHHHHTTCC
T ss_pred             EEEEEEEECCCCCCCCCCcEEeEHHHHHHHHHHhhC
Confidence            999999999889988889999999999999999875

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=100.00  E-value=2.5e-57  Score=402.10  Aligned_cols=236  Identities=33%  Similarity=0.629  Sum_probs=202.1

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|.+...    ++...+ |+||||+++||||||||+..........+.|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~----~~~~~~-CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~v~~G~~~~~~~~~~~~   75 (237)
T 2f91_A            1 IVGGTDATLGEFPYQLSFQETFI----GFSFHF-CGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQ   75 (237)
T ss_dssp             CBSCEECCTTTSTTEEEEEEEET----TEEEEE-EEEEEEETTEEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCSCCE
T ss_pred             CCCccCCCCCCCCcEEEEEEecC----CCCcce-EEEEEeeCCEEEEcHHhCCCCccCCcccEEEEECCeeccCCCCccE
Confidence            78999999999999999976521    111134 99999999999999999976322234568899999887643 4458


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....     ..+..++++|||.+...+..+..|+++.
T Consensus        76 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~-----~~~~~~~v~GwG~~~~~~~~~~~L~~~~  150 (237)
T 2f91_A           76 IITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGH-----TATGDVIVTGWGTTSEGGNTPDVLQKVT  150 (237)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTC-----CCCSEEEEEESCCSSTTCCCCSBCEEEE
T ss_pred             EEEEEEEEECCCCCCCCCCCcEEEEEECCCcccCCceeeccCCCCCC-----CCCCcEEEEECCcCCCCCCccceeeEEE
Confidence            89999999999999888889999999999999999999999996542     4677899999999877666788899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.++|+..+..  ..+.+.||||+...++.++|.|||||||++..+++|+|+||+|||..|+..+.|++||||+.|
T Consensus       151 ~~~~~~~~C~~~~~~--~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~  228 (237)
T 2f91_A          151 VPLVSDEDCRADYGA--DEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYH  228 (237)
T ss_dssp             EEEECHHHHHHHHCT--TTSCTTEEEECCTTCCCBCCTTCTTCEEEECTTSSCEEEEEEEEESSSSCTTCCEEEEEGGGS
T ss_pred             EeEcCHHHhhhhhCC--CCcCCCeEEEecCCCCCCCCCCcCCCCeEEecCCCEEEEEEEEecCCCCCCCCCcEEEEHHHh
Confidence            999999999988752  257889999987666789999999999999888999999999999999988899999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|.
T Consensus       229 ~~WI~~~~~  237 (237)
T 2f91_A          229 VDWIKANAV  237 (237)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHhcC
Confidence            999999873

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=100.00  E-value=2.1e-57  Score=402.80  Aligned_cols=235  Identities=34%  Similarity=0.675  Sum_probs=203.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|.+..      ....++|+||||+++||||||||+...  .....+.|++|.++.... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~~~~CgGtLI~~~~VLTAAHC~~~~--~~~~~~~v~~G~~~~~~~~~~~~   72 (238)
T 3bg8_A            1 IVGGTASVRGEWPWQVTLHTTS------PTQRHLCGGSIIGNQWILTAAHCFYGV--ESPKILRVYSGILNQSEIKEDTS   72 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEECS------SSCEEEEEEEEEETTEEEECGGGGTTC--CCGGGEEEECSCSBGGGCCTTSC
T ss_pred             CCCCeECCCCCcCcEEEEEeec------CCCcEEEEEEEeeCCEEEECHHHCCCC--CCCceEEEEEeeccCCcCCCCce
Confidence            7899999999999999997642      123689999999999999999999752  223467899999887543 3467


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|+++.
T Consensus        73 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~  149 (238)
T 3bg8_A           73 FFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGE---RNVIYTDCWVTGWGYRKLRDKIQNTLQKAK  149 (238)
T ss_dssp             CEEEEEEEECTTCCCGGGSCCCEEEEESSCCCCBTTBCCCBCCCGGG---GSSCCCCEEEEESCCSSSSCCCCSBCEEEE
T ss_pred             EEeeEEEEECCCCCCCCCCCcEEEEEECCccccCCCcccCCCCCCcc---CcCCCCeEEEEecCCCCCCCChhhhhcEee
Confidence            78999999999999888889999999999999999999999997543   345678899999999877665678899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.++|+..+..  ..+.+.||||+...++.++|+|||||||++..+++|+|+||+|||..|+..+.|++||||+.|
T Consensus       150 ~~~~~~~~C~~~~~~--~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y  227 (238)
T 3bg8_A          150 IPLVTNEECQKRYRG--HKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEY  227 (238)
T ss_dssp             CCEECHHHHHHHCTT--SCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGG
T ss_pred             EEEECHHHhhhhhcC--CCCCCCeEeecCCCCCCCcCCCCCCcceEEEECCeEEEEEEEEECCCCCCCCCCcEEEeHHHH
Confidence            999999999988753  247899999987666789999999999999989999999999999999988889999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       228 ~~WI~~~~~  236 (238)
T 3bg8_A          228 VDWILEKTQ  236 (238)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHHh
Confidence            999999885

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=100.00  E-value=2.8e-57  Score=410.79  Aligned_cols=251  Identities=31%  Similarity=0.597  Sum_probs=208.9

Q ss_pred             CCCCCCCcCCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEe
Q psy2626          95 NECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHV  174 (355)
Q Consensus        95 ~~CG~~~~~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~  174 (355)
                      .+||+.......||+||++|.+++|||||+|++...    .+...|+|+||||+++||||||||+.+.  .......|++
T Consensus        11 ~~CG~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~----~~~~~~~CgGsLIs~~~VLTAAHCv~~~--~~~~~~~v~~   84 (276)
T 2vnt_A           11 FQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHR----GGSVTYVCGGSLMSPCWVISATHCFIDY--PKKEDYIVYL   84 (276)
T ss_dssp             CCTTCCCC-----CCSSEECCGGGSTTEEEEEEECS----SSCEEEEEEEEEEETTEEEECGGGTTTC--CCGGGEEEEE
T ss_pred             CCCCCcCCCCCCcEECCEECCCCCCCcEEEEEEecC----CCcceeEEEEEEeeCCEEEECcccccCC--CCCccEEEEe
Confidence            379998765678999999999999999999987654    4445689999999999999999999762  2335678999


Q ss_pred             ccccccCC-CCcEEEEEeeeEeCCCCCCCCC--CCCeEEEEeCCCC----CCCCCccccccCCCCCccccccCCCceEEE
Q psy2626         175 GSIDLEDT-SSGVSIEIERPIIHEQYTSARK--LNDIALFRLREDA----PLSDLIQPICLPYDTNLRSELFERKTPFVA  247 (355)
Q Consensus       175 G~~~~~~~-~~~~~~~v~~i~~hp~y~~~~~--~~DIALl~L~~~v----~~~~~v~picLp~~~~~~~~~~~~~~~~v~  247 (355)
                      |.+++... ...+.+.|+++++||+|+....  .+|||||+|+.++    .|+++|+|||||....   ....+..+.++
T Consensus        85 g~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~Diall~L~~~~~~~~~~~~~v~picL~~~~~---~~~~~~~~~~~  161 (276)
T 2vnt_A           85 GRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYN---DPQFGTSCEIT  161 (276)
T ss_dssp             SCCBSSSCCTTCEEEEEEEEEECTTCEECSSCEESCCEEEEEECTTSCCCCCCSSCCCCBCCCSSC---CCCTTCEEEEE
T ss_pred             eeeeccCCCCceEEEEEEEEEEccccccccccccchhhhhhhhccccccccCcccccccccccccc---cccccceEEEE
Confidence            99887654 4668899999999999986643  4899999998765    5889999999997654   44567889999


Q ss_pred             EeccCCCCC-CCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEE
Q psy2626         248 GWGSTVFRG-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVS  326 (355)
Q Consensus       248 GwG~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S  326 (355)
                      |||.+.... ..+..++.+.+++++.++|...+... ....+.++|++...+..++|+|||||||++..+++|+|+||+|
T Consensus       162 g~G~~~~~~~~~~~~l~~~~~~i~~~~~C~~~~~~~-~~~~~~~~~~~~~~~~~~~C~GDSGGPLv~~~~~~~~lvGIvS  240 (276)
T 2vnt_A          162 GFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYG-SEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVS  240 (276)
T ss_dssp             ESCCSSTTCSCCCSBCEEEEEEEECHHHHTSTTTTG-GGSCTTEEEEECTTSCCCCCTTCTTCEEEEEETTEEEEEEEEE
T ss_pred             EeeccccCCCCcchhheeeeeeEecHHHhhhhhccC-cccCccceeeccCCCCCCCCCCCCCCeEEEeeCCeEEEEEEEE
Confidence            999886544 35677889999999999999876532 3456788888877767899999999999999999999999999


Q ss_pred             eCCCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         327 YGKKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       327 ~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      ||.+|+..+.|+|||||++|++||+++|+
T Consensus       241 ~G~~C~~~~~P~vyt~V~~y~~WI~~~~~  269 (276)
T 2vnt_A          241 WGRGCALKDKPGVYTRVSHFLPWIRSHTK  269 (276)
T ss_dssp             ECSSSSBTTBCEEEEEGGGGHHHHHHHHS
T ss_pred             ECCCCCCCCCCEEEEEHHHHHHHHHHHhh
Confidence            99999988999999999999999999985

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=100.00  E-value=4e-57  Score=402.67  Aligned_cols=229  Identities=31%  Similarity=0.671  Sum_probs=197.5

Q ss_pred             CCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-C
Q psy2626         105 SKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-S  183 (355)
Q Consensus       105 ~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~  183 (355)
                      ..||+||.+|.+++|||||+|.+..        ..++|+||||+++||||||||+..      ....|++|.++.... .
T Consensus        13 ~~rIvgG~~a~~~~~Pw~v~l~~~~--------~~~~CgGtLI~~~~VLTAAHC~~~------~~~~v~~G~~~~~~~~~   78 (245)
T 1t8o_A           13 LSRIVNGEEAVPGSWPWQVSLQDKT--------GFHFCGGSLINENWVVTAAHCGVT------TSDVVVAGEFDQGSSSE   78 (245)
T ss_dssp             ---CBTCEECCTTSSTTEEEEECTT--------CCEEEEEEEEETTEEEECGGGCCC------TTSEEEESCSBTTCSSS
T ss_pred             CCceECCEECCCCCCCceEEEEcCC--------CCeEEEEEEeeCCEEEEcHHhCcC------CCcEEEEeeeecCCCCC
Confidence            3599999999999999999996531        247899999999999999999864      245799999887653 4


Q ss_pred             CcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCC-CCccc
Q psy2626         184 SGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP-LSPKL  262 (355)
Q Consensus       184 ~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~-~~~~l  262 (355)
                      ..+.+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+..... .+..|
T Consensus        79 ~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~~L  155 (245)
T 1t8o_A           79 KIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASD---DFAAGTTCVTTGWGLTRYTNANTPDRL  155 (245)
T ss_dssp             CCEEEEEEEEEECTTCCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTC---CCCTTCEEEEEESCCSCC--CCCCSBC
T ss_pred             CcEEEEEEEEEeCCCCCCCCCCCCEEEEEECCCCcCCCceeeeECCCCcc---CCCCCCEEEEEEeCCCCCCCCCCcchh
Confidence            56789999999999999988899999999999999999999999997653   345688999999999876543 57889


Q ss_pred             eEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEe
Q psy2626         263 RHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTR  342 (355)
Q Consensus       263 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~  342 (355)
                      +++.+++++.++|+..+..   .+.+.||||+  ..+.++|+|||||||++..+++|+|+||+|||..|+..+.|++|||
T Consensus       156 ~~~~~~~~~~~~C~~~~~~---~~~~~~~Ca~--~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~c~~~~~p~vyt~  230 (245)
T 1t8o_A          156 QQASLPLLSNTNCKKYWGT---KIKDAMICAG--ASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYAR  230 (245)
T ss_dssp             EEEEEEEECHHHHHHHHGG---GCCTTEEEEE--CSSCBCCTTCTTCEEEEEETTEEEEEEEEEECCTTCCTTSEEEEEE
T ss_pred             eEEEEeeEcchhhhHhhcC---cCCCceEEcc--CCCCccCcccCcCCEEEEECCEEEEEEEEEeCCCCCCCCCCEEEEE
Confidence            9999999999999998753   5789999998  3368999999999999998999999999999999988788999999


Q ss_pred             CcccHHHHHhHhC
Q psy2626         343 VTNYIQWIADNIS  355 (355)
Q Consensus       343 V~~y~~WI~~~i~  355 (355)
                      |+.|++||+++|+
T Consensus       231 V~~~~~WI~~~~~  243 (245)
T 1t8o_A          231 VTALVNWVQQTLA  243 (245)
T ss_dssp             GGGTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999999873

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=100.00  E-value=4.6e-57  Score=399.84  Aligned_cols=233  Identities=34%  Similarity=0.705  Sum_probs=204.6

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC--CCc
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT--SSG  185 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~--~~~  185 (355)
                      |+||.+|.+++|||||+|.+..         .++|+||||+++||||||||+... ......+.|++|.+.....  ...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---------~~~CgGtLI~~~~VLTAAHC~~~~-~~~~~~~~v~~g~~~~~~~~~~~~   70 (235)
T 4dgj_A            1 IVGGSDAKEGAWPWVVGLYYDD---------RLLCGASLVSSDWLVSAAHCVYGR-NLEPSKWTAILGLHMKSNLTSPQT   70 (235)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT---------EEEEEEEECSSSEEEECHHHHTTS-CSSGGGEEEEESCCBTTCCSCTTC
T ss_pred             CCCCccCCCCCCCcEEEEeeCC---------CeEEEEEEeeCCEEEECHHhcCCC-CCCCccEEEEEeeecccccCCCce
Confidence            7899999999999999997642         489999999999999999999652 2233567899998765442  455


Q ss_pred             EEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEE
Q psy2626         186 VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHV  265 (355)
Q Consensus       186 ~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~  265 (355)
                      +.+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|+++
T Consensus        71 ~~~~v~~i~~hp~y~~~~~~~DiALl~L~~~~~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~L~~~  147 (235)
T 4dgj_A           71 VPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQ---VFPPGRNCSIAGWGTVVYQGTTADILQEA  147 (235)
T ss_dssp             EEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCTTC---CCCTTCEEEEEESSBSSTTCCBCSBCEEE
T ss_pred             eEEeEEEEEECCCCCCCCCCCeEEEEEECCccccCCcccccCCCCccc---CCCCCCEEEEEecccCCCCCccchhheEe
Confidence            778899999999999999999999999999999999999999997653   34578899999999987766678899999


Q ss_pred             EEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcc
Q psy2626         266 QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN  345 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~  345 (355)
                      .+++++.+.|+..+..  ..+.++||||+...++.++|+|||||||++..+++|+|+||+|||..|+..+.|++||||+.
T Consensus       148 ~~~~~~~~~C~~~~~~--~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~  225 (235)
T 4dgj_A          148 DVPLLSNERCQQQMPE--YNITENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSR  225 (235)
T ss_dssp             EEEEECHHHHHHHCTT--SCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGG
T ss_pred             EeeecCHHHhhhhccC--ccCCCCeEeecCCCCCCccCCCCCCCeEEEEECCcEEEEEEEEEcCCCCCCCCCEEEeeHHH
Confidence            9999999999998764  35789999998766678999999999999999999999999999999998889999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++|+
T Consensus       226 ~~~WI~~~i~  235 (235)
T 4dgj_A          226 FTEWIQSFLH  235 (235)
T ss_dssp             THHHHHTTCC
T ss_pred             HHHHHHHHhC
Confidence            9999999885

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=4.4e-57  Score=403.86  Aligned_cols=236  Identities=37%  Similarity=0.675  Sum_probs=203.0

Q ss_pred             CCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccC--C
Q psy2626         105 SKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLED--T  182 (355)
Q Consensus       105 ~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~--~  182 (355)
                      ..||+||++|.+++|||||+|.+..     +....++|+||||+++||||||||+..     ...+.|++|.+++..  .
T Consensus        11 ~~rIvgG~~a~~~~~Pw~v~l~~~~-----~~~~~~~CgGtLIs~~~VLTAAHC~~~-----~~~~~V~~G~~~~~~~~~   80 (251)
T 1pyt_D           11 SARVVGGEDAIPHSWPWQISLQYLR-----DNTWRHTCGGTLITPNHVLTAAHCISN-----TLTYRVALGKNNLEVEDE   80 (251)
T ss_dssp             SSSCCSSCCCCTTSSTTEEEEEEEE-----TTEEEEEEEEEEEETTEEEECGGGCCT-----TCCEEEEESCSBTTCSCC
T ss_pred             CCccCCCEECCCCCCCceEEEEEEc-----CCCcceEEEeEEecCCEEEECHHHhCC-----CceEEEEEcccccccCCC
Confidence            4799999999999999999997643     122358999999999999999999964     235789999988753  2


Q ss_pred             CCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccc
Q psy2626         183 SSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKL  262 (355)
Q Consensus       183 ~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l  262 (355)
                      ...+.+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|
T Consensus        81 ~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~L  157 (251)
T 1pyt_D           81 AGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGS---LLPQDYPCFVTGWGRLYTNGPIAAEL  157 (251)
T ss_dssp             SSCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTC---CCCTTCEEEECBCCCSSCCSCCCSBC
T ss_pred             CCcEEEEEEEEEECCCCCCCCCCCCEEEEEECCCcccCCCeeeeEcCCCcc---cCCCCCEEEEEecccCCCCCCcccch
Confidence            445788999999999999888889999999999999999999999997653   33467889999999987766667889


Q ss_pred             eEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC--CCCCCCCCcEE
Q psy2626         263 RHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--KCAEVGFPGVY  340 (355)
Q Consensus       263 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~--~C~~~~~p~vy  340 (355)
                      +++.+++++.+.|+..+.. +..+.+.||||+. .++.++|+|||||||++..+++|+|+||+|||.  .|+..+.|+||
T Consensus       158 ~~~~~~~~~~~~C~~~~~~-~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~~~C~~~~~p~vy  235 (251)
T 1pyt_D          158 QQGLQPVVDYATCSQRDWW-GTTVKETMVCAGG-DGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVF  235 (251)
T ss_dssp             BCCEEECBCHHHHTSTTTT-TTTCCTTEEEECC-SCSSCCCCSCTTCEEEEESSSSEEEEEEEEECCSSCTTBTTBCEEE
T ss_pred             heeEeEeeCHHHcchhhcc-CCCcCCCeEEecC-CCCCccCCCCCCCceEEEECCCEEEEEEEEECCCCCCCCCCCCeEE
Confidence            9999999999999876431 2357899999987 446799999999999998889999999999996  69887889999


Q ss_pred             EeCcccHHHHHhHhC
Q psy2626         341 TRVTNYIQWIADNIS  355 (355)
Q Consensus       341 t~V~~y~~WI~~~i~  355 (355)
                      |||+.|++||+++|+
T Consensus       236 t~V~~~~~WI~~~~~  250 (251)
T 1pyt_D          236 TRVSAYIDWINQKLQ  250 (251)
T ss_dssp             EEGGGGHHHHHHHTT
T ss_pred             EEHHHHHHHHHHHhc
Confidence            999999999999985

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=100.00  E-value=1.8e-57  Score=414.59  Aligned_cols=241  Identities=32%  Similarity=0.569  Sum_probs=196.3

Q ss_pred             CCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCC---CCCcCceEEEeccccccC
Q psy2626         105 SKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDT---TGEYEPYIVHVGSIDLED  181 (355)
Q Consensus       105 ~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~---~~~~~~~~v~~G~~~~~~  181 (355)
                      ..||+||.+|.+++|||||+|++..       ...++|+||||+++||||||||+....   ......+.|++|.++...
T Consensus        28 ~~rIvgG~~a~~~~~Pw~v~l~~~~-------~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~~V~~G~~~~~~  100 (289)
T 2bdy_A           28 DGRIVEGSDAEIGMSPWQVMLFRKS-------PQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTR  100 (289)
T ss_dssp             ---CBSCEECCTTSCTTEEEEEETT-------TTEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSS
T ss_pred             CCeEECCEECCCCCCCCeEEEEECC-------CCCEEEEEEEecCCEEEEcHHhcccCccccccCcccEEEEEccccccc
Confidence            5799999999999999999996432       135899999999999999999995310   112346789999988754


Q ss_pred             CC--CcEEEEEeeeEeCCCCCC-CCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC--
Q psy2626         182 TS--SGVSIEIERPIIHEQYTS-ARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG--  256 (355)
Q Consensus       182 ~~--~~~~~~v~~i~~hp~y~~-~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~--  256 (355)
                      ..  ..+.+.|+++++||+|+. ....||||||||++|+.|+++|+|||||...........+..++++|||.+....  
T Consensus       101 ~~~~~~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~g~~~~v~GWG~~~~~~~~  180 (289)
T 2bdy_A          101 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA  180 (289)
T ss_dssp             CCTTTCEEEEEEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESSCSSCC---
T ss_pred             cCCCcceeeeeEEEEECCCCCCCCCCCCeEEEEEECCccccCCcccccCCCCccccccccCCCCEEEEECCCcCCCcccc
Confidence            32  356778999999999984 4677999999999999999999999999654211123467889999999886531  


Q ss_pred             ---C-CCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccC---CCCCCCcCCCCCcceeee--CCeEEEEEEEEe
Q psy2626         257 ---P-LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS---GGKDSCGGDSGGPLMYPL--DTKYYIIGVVSY  327 (355)
Q Consensus       257 ---~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~---~~~~~C~GDsGgPL~~~~--~~~~~lvGI~S~  327 (355)
                         . .+..|+++.+++++.+.|+..+.   ..+.++||||+...   .+.++|+|||||||++..  +++|+|+||+||
T Consensus       181 ~~~~~~~~~L~~~~v~i~~~~~C~~~~~---~~i~~~~iCag~~~~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~  257 (289)
T 2bdy_A          181 NVGKGQPSVLQVVNLPIVERPVCKDSTR---IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSW  257 (289)
T ss_dssp             ----CCCSBCEEEEEEBCCHHHHHHTCS---SCCCTTEEEECCCGGGCCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEE
T ss_pred             CccccccccceEEEEEEECHHHhhcccc---CcCCCCEEeccCCCCCCCCCccCCCCCccceEEEECCCCCEEEEEEEEE
Confidence               1 26789999999999999998764   35789999998542   257899999999999987  789999999999


Q ss_pred             CCCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         328 GKKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       328 g~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      |..|+..+.|+|||||++|++||+++|+
T Consensus       258 g~~C~~~~~p~vyt~V~~y~~WI~~~i~  285 (289)
T 2bdy_A          258 GEGCDRDGKYGFYTHVFRLKKWIQKVID  285 (289)
T ss_dssp             CSSSSCTTCCEEEEETGGGHHHHHHHHH
T ss_pred             CCCCCCCCCCEEEEEHHHHHHHHHHHHH
Confidence            9999988899999999999999999873

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=100.00  E-value=1.4e-56  Score=398.37  Aligned_cols=235  Identities=35%  Similarity=0.726  Sum_probs=203.1

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|..++|||||+|.+...      ...++|+||||+++||||||||+....  ....+.|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~------~~~~~CgGtLI~~~~VLTAAHC~~~~~--~~~~~~v~~G~~~~~~~~~~~~   72 (241)
T 2any_A            1 IVGGTESSWGEWPWQVSLQVKLT------AQRHLCGGSLIGHQWVLTAAHCFDGLP--LQDVWRIYSGILELSDITKDTP   72 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEESS------SEEEEEEEEEEETTEEEECGGGGSSCC--CSTTEEEECSCSBGGGCCTTSC
T ss_pred             CCCCEECCCCCCCcEEEEEEEcC------CCceEEEEEEecCCEEEECHHHcCCCC--CCccEEEEeeeeeccccccCce
Confidence            68999999999999999976421      235899999999999999999997521  22457899999887543 3456


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|+++.
T Consensus        73 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~  149 (241)
T 2any_A           73 FSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGD---TSTIYTNCWVTGWGFSKEKGEIQNILQKVN  149 (241)
T ss_dssp             CBCEEEEEECTTCCTTSSSSCCEEEEESSCCCCBTTBCCCCCCCSSC---CSTTCSEEEEEESSCSSTTCCCCSBCEEEE
T ss_pred             EEeeEEEEECCCCCCCCCCCCeEEEEeCCcccCCCCcceeEcCCccc---CCCCCCeEEEEecccCCCCCCcCchhheeE
Confidence            77899999999999888889999999999999999999999997653   345678899999999877665678899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.+.|+..+...  .+.+.||||+...++.++|.|||||||++..+++|+|+||+|||..|+..+.|++||||+.|
T Consensus       150 ~~~~~~~~C~~~~~~~--~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~  227 (241)
T 2any_A          150 IPLVTNEECQKRYQDY--KITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEY  227 (241)
T ss_dssp             EEEECHHHHHTTSCTT--CSCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGG
T ss_pred             eEEeCHHHhhhHhccC--CCCcCcEeecCCCCCCccCCCCCCCcEEEEECCEEEEEEEEEecCCCCCCCCCeEEEEHHHh
Confidence            9999999999877542  47899999987665789999999999999989999999999999999887889999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       228 ~~WI~~~~~  236 (241)
T 2any_A          228 MDWILEKTQ  236 (241)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhh
Confidence            999999874

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=100.00  E-value=3.3e-56  Score=395.74  Aligned_cols=234  Identities=33%  Similarity=0.657  Sum_probs=203.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCC---CCcCceEEEeccccccCC--
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTT---GEYEPYIVHVGSIDLEDT--  182 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~---~~~~~~~v~~G~~~~~~~--  182 (355)
                      |+||.+|.+++|||||+|.+..        ..++|+||||+++||||||||+.....   .....+.|++|.++....  
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~--------~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~   72 (241)
T 3ncl_A            1 VVGGTDADEGEWPWQVSLHALG--------QGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSA   72 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT--------TEEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCSBTTCTTS
T ss_pred             CCCCeECCCCCCCcEEEEEcCC--------CceEEEEEEeeCCEEEEcHHhcccCCCccccCCceEEEEEeccccccCCC
Confidence            7899999999999999996542        247899999999999999999965211   233567899999887653  


Q ss_pred             CCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccc
Q psy2626         183 SSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKL  262 (355)
Q Consensus       183 ~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l  262 (355)
                      ...+.+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|
T Consensus        73 ~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~piclp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~l  149 (241)
T 3ncl_A           73 PGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASH---VFPAGKAIWVTGWGHTQYGGTGALIL  149 (241)
T ss_dssp             TTCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCBCCCTTC---CCCTTCEEEEEESSBSSTTSCBCSBC
T ss_pred             CCceEEEEEEEEECCCCCCCCCCCcEEEEEECCCCcccCccCceEcCCccc---CCCCCCEEEEEEecccCCCCCcCcee
Confidence            356889999999999999988899999999999999999999999997653   34578899999999998776677889


Q ss_pred             eEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeee-CCeEEEEEEEEeCCCCCCCCCCcEEE
Q psy2626         263 RHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGKKCAEVGFPGVYT  341 (355)
Q Consensus       263 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-~~~~~lvGI~S~g~~C~~~~~p~vyt  341 (355)
                      +++.+++++.+.|+..+..   .+.+.||||+...++.++|+|||||||++.. +++|+|+||+|||..|+..+.|++||
T Consensus       150 ~~~~~~~~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~g~~~l~Gi~S~g~~c~~~~~p~vyt  226 (241)
T 3ncl_A          150 QKGEIRVINQTTCENLLPQ---QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYT  226 (241)
T ss_dssp             EEEEEEECCHHHHHHHSTT---TCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEE
T ss_pred             eEEeEEEECHHHhhhhccc---CCCCCeEEeCCCCCCCccCCCcCCCCEEEEcCCCcEEEEEEEEECCCCCCCCCCeEEE
Confidence            9999999999999998754   6889999998766678999999999999754 68999999999999999888999999


Q ss_pred             eCcccHHHHHhHhC
Q psy2626         342 RVTNYIQWIADNIS  355 (355)
Q Consensus       342 ~V~~y~~WI~~~i~  355 (355)
                      ||+.|++||++++.
T Consensus       227 ~v~~y~~WI~~~~~  240 (241)
T 3ncl_A          227 RLPLFRDWIKENTG  240 (241)
T ss_dssp             ESGGGHHHHHHHHC
T ss_pred             EHHHHHHHHHHHhC
Confidence            99999999999874

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=100.00  E-value=1.2e-56  Score=401.72  Aligned_cols=237  Identities=35%  Similarity=0.652  Sum_probs=203.4

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||++|..++|||||+|.+.         ..++|+||||+++||||||||+...  .....+.|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~---------~~~~CgGtLIs~~~VLTAAHC~~~~--~~~~~~~v~~G~~~~~~~~~~~~   69 (254)
T 2bz6_H            1 IVGGKVCPKGECPWQVLLLVN---------GAQLCGGTLINTIWVVSAAHCFDKI--KNWRNLIAVLGEHDLSEHDGDEQ   69 (254)
T ss_dssp             CBSCEECCTTSSTTEEEEEET---------TEEEEEEEECSSSEEEECGGGGTTC--SCGGGEEEEESCCBTTCCCSCCE
T ss_pred             CCCCEECCCCCcCCEEEEEeC---------CCcEEEEEEecCCEEEECHHHcCCC--CCcceEEEEECCcccCCCCCCcE
Confidence            789999999999999999742         2479999999999999999999752  223568899999987654 3467


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||...........+..++++|||.+...+..+..|+++.
T Consensus        70 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  149 (254)
T 2bz6_H           70 SRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLN  149 (254)
T ss_dssp             EEEEEEEEEETTCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEE
T ss_pred             EEEEEEEEECCCCCCCCCcCcEEEEEECCccccCCCccceECCCCccccccccCCCcEEEEeCcccCCCCCCChhheeee
Confidence            89999999999999988899999999999999999999999996542111234577899999999877665678899999


Q ss_pred             EeeeChhHHHhhhhcC--CCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCc
Q psy2626         267 ISVVDNPKCRQIFSNY--GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT  344 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~--~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~  344 (355)
                      +++++.++|...+...  ...+.+.||||+...++.++|+|||||||++..+++|+|+||+|||..|+..+.|++||||+
T Consensus       150 ~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~  229 (254)
T 2bz6_H          150 VPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVS  229 (254)
T ss_dssp             EEEECHHHHHHHSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGG
T ss_pred             eeeecHHHHhhhhhccccCCccCCCEEeecCCCCCCccccccCCCceEEeECCEEEEEEEEEECCCCCCCCCCeEEEEHH
Confidence            9999999999887542  13578999999876656899999999999999889999999999999999878899999999


Q ss_pred             ccHHHHHhHhC
Q psy2626         345 NYIQWIADNIS  355 (355)
Q Consensus       345 ~y~~WI~~~i~  355 (355)
                      .|++||+++|+
T Consensus       230 ~~~~WI~~~~~  240 (254)
T 2bz6_H          230 QYIEWLQKLMR  240 (254)
T ss_dssp             GGHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999999874

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=100.00  E-value=3.1e-56  Score=397.02  Aligned_cols=234  Identities=35%  Similarity=0.673  Sum_probs=198.7

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||.+|..++|||||+|.+...      ...++|+||||+++||||||||+... ......+.|++|.++...  ..+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~------~~~~~CgGtLIs~~~VLTAAHC~~~~-~~~~~~~~v~~g~~~~~~--~~~~   71 (245)
T 2f9n_A            1 IVGGQEAPRSKWPWQVSLRVRDR------YWMHFCGGSLIHPQWVLTAAHCVGPD-VKDLATLRVQLREQHLYY--QDQL   71 (245)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESS------SEEEEEEEEEEETTEEEECGGGGCSS-CCCGGGEEEECSCSBTTT--TCCC
T ss_pred             CCCCeECCCCCCCcEEEEEEcCC------CcceEEEEEEeeCCEEEECHHhCCCC-CCCcceEEEEeCCccccc--CceE
Confidence            78999999999999999976421      23589999999999999999999642 223456889999987753  3456


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCC--CccceEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL--SPKLRHV  265 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~--~~~l~~~  265 (355)
                      +.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+......  +..|+++
T Consensus        72 ~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~~~L~~~  148 (245)
T 2f9n_A           72 LPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASE---TFPPGMPCWVTGWGDVDNDEPLPPPFPLKQV  148 (245)
T ss_dssp             BCEEEEEECTTCCSSCCTTCCEEEEESSCCCCCSSSCCCBCCCTTC---CCCTTCCEEEEESCCSBTTBCCCTTCBCEEE
T ss_pred             EEEEEEEECCCccCCCCCCcEEEEEeCCCCcCCCCccccCCCCccc---CCCCCCEEEEEEeCCCCCCCCCCccccceEE
Confidence            7899999999999988889999999999999999999999997653   3456889999999998765433  3479999


Q ss_pred             EEeeeChhHHHhhhhcCC------CCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcE
Q psy2626         266 QISVVDNPKCRQIFSNYG------ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV  339 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~------~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~v  339 (355)
                      .+++++++.|+..+....      ..+.+.||||+.  .+.++|+|||||||++..+++|+|+||+|||.+|+..+.|+|
T Consensus       149 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~Ca~~--~~~~~C~GDSGgPL~~~~~g~~~l~GI~S~g~~C~~~~~p~v  226 (245)
T 2f9n_A          149 KVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGN--SQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGI  226 (245)
T ss_dssp             ECCEECHHHHHHHHHTTCCSCTTSCCSCTTEEEECC--SSSBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEE
T ss_pred             EEEEcCHHHhhhhhcccccccccccccccccEeecC--CCCCcCCCCCCCceEEEECCEEEEEEEEEeCCCCCCCCCCeE
Confidence            999999999998875321      247889999984  367999999999999998999999999999999998888999


Q ss_pred             EEeCcccHHHHHhHhC
Q psy2626         340 YTRVTNYIQWIADNIS  355 (355)
Q Consensus       340 yt~V~~y~~WI~~~i~  355 (355)
                      ||||+.|++||+++|+
T Consensus       227 yt~V~~y~~WI~~~~~  242 (245)
T 2f9n_A          227 YTRVTYYLDWIHHYVP  242 (245)
T ss_dssp             EEEGGGGHHHHHHHSC
T ss_pred             EEEHHHHHHHHHHHhh
Confidence            9999999999999874

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=100.00  E-value=7.3e-56  Score=391.41  Aligned_cols=230  Identities=34%  Similarity=0.670  Sum_probs=198.3

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||.+|.+++|||||+|.+..         .++|+||||+++||||||||+...  .....+.|++|....   ...+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---------~~~CgGtLIs~~~VLTAAhC~~~~--~~~~~~~v~~G~~~~---~~~~~   66 (232)
T 2oq5_A            1 IVGGTEVEEGEWPWQASLQWDG---------SHRCGATLINATWLVSAAHCFTTY--KNPARWTASFGVTIK---PSKMK   66 (232)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT---------EEEEEEEEEETTEEEECGGGGSSC--CCGGGEEEEESSBST---TCSEE
T ss_pred             CCCCEECCCCCCCeeEEEEeCC---------CeeEEEEEEcCCEEEECHHHcCCC--CCCceEEEEEeeEEC---CCceE
Confidence            6899999999999999997632         489999999999999999999752  223467899998653   34578


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI  267 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~  267 (355)
                      +.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|+++.+
T Consensus        67 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~  143 (232)
T 2oq5_A           67 RGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASY---EFQPGDVMFVTGFGALKNDGYSQNHLRQAQV  143 (232)
T ss_dssp             EEEEEEEECTTCCTTCCTTCCEEEEESSCCCCCSSSCCCBCCCTTC---CCCTTCEEEEEESCCSSTTCCCCSBCEEEEE
T ss_pred             EeEEEEEeCCCCCCCCCCCCEEEEEecCCCccCCceeEeECCCccc---cCCCCCEEEEEECCccCCCCCCCceeeEeEE
Confidence            8999999999999988899999999999999999999999997653   3346788999999998876667788999999


Q ss_pred             eeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeee-CCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         268 SVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       268 ~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      ++++.+.|+..+.. ...+.+.||||+...++.++|+|||||||++.. +++|+|+||+|||..|+..+.|++||||+.|
T Consensus       144 ~~~~~~~C~~~~~~-~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~  222 (232)
T 2oq5_A          144 TLIDATTCNEPQAY-NDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTAL  222 (232)
T ss_dssp             EEECHHHHTSTTTT-TTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSBTTBCEEEEETGGG
T ss_pred             EEeCHHHcCCcccc-CCccCCCEEeecCCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEeCCCCCCCCCCeEEEEhHHh
Confidence            99999999875432 335789999999766568999999999999975 5889999999999999987889999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||++++.
T Consensus       223 ~~WI~~~~~  231 (232)
T 2oq5_A          223 RDWITSKTG  231 (232)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999874

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=100.00  E-value=4.3e-56  Score=405.39  Aligned_cols=240  Identities=33%  Similarity=0.635  Sum_probs=200.1

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-----
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-----  182 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-----  182 (355)
                      |+||.+|..++|||||+|.+...   .++...++|+||||+++||||||||+...  .....+.|++|.+++...     
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~---~~~~~~~~CgGsLIs~~~VLTAAHC~~~~--~~~~~~~v~~G~~~~~~~~~~~~   75 (290)
T 1fiw_A            1 IIGGQDAAHGAWPWMVSLQIFTY---HNNRRYHVCGGSLLNSQWLLTAAHCFRIK--KKVTDWRLIFGAKEVEWGTNKPV   75 (290)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEET---TTTEEEEEEEEEEEETTEEEECGGGGSSC--CSGGGEEEEESCSBCCTTCCSCC
T ss_pred             CCCCEECCCCCCCcEEEEEEecc---CCCccceEEEEEEeeCCEEEECHHhCCCC--CCCcceEEEecceEEeccCCCcC
Confidence            78999999999999999976432   02223589999999999999999999752  223467899999876532     


Q ss_pred             -CCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCC-CCc
Q psy2626         183 -SSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP-LSP  260 (355)
Q Consensus       183 -~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~-~~~  260 (355)
                       ...+.+.|+++++||+|+.....||||||||++|+.|+++|+|||||.....  ....+..++++|||.+...+. .+.
T Consensus        76 ~~~~~~~~V~~i~~Hp~y~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~--~~~~~~~~~v~GWG~~~~~~~~~~~  153 (290)
T 1fiw_A           76 KPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAG--PPRVPQTCWVAGWGFLQENARRTSP  153 (290)
T ss_dssp             CTTCEEEEEEEEEECTTCBTTTTBTCCEEEEEESCCCCBTTBCCCBCCCTTCC--SCCSSCEEEEEESCCSSTTCSSCCS
T ss_pred             CCCceEEEEEEEEECCCCCCCCCCCCEEEEEECCccccCCccccccCCCcccc--CcCCCCeEEEEEeccCCCCCCCCCc
Confidence             2467889999999999999888999999999999999999999999965421  123578899999999876542 467


Q ss_pred             cceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeee--CCeEEEEEEEEeCCCCCCCCCCc
Q psy2626         261 KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL--DTKYYIIGVVSYGKKCAEVGFPG  338 (355)
Q Consensus       261 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~--~~~~~lvGI~S~g~~C~~~~~p~  338 (355)
                      .|+++.+++++.+.|+..+. +...+.+.||||+...++.++|+|||||||++..  +++|+|+||+|||.+|+..+.|+
T Consensus       154 ~L~~~~v~i~~~~~C~~~~~-~~~~i~~~~iCag~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p~  232 (290)
T 1fiw_A          154 MLQEARVDLIDLGLCNSTRW-YNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPG  232 (290)
T ss_dssp             BCEEEEEEEECHHHHTSTTT-TTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECSSSSCEEEEEEEEECSSSSBTTBCE
T ss_pred             eeeEEEEEEecHHHhccccc-cCCcCCCCEEEEecCCCCCeeCCCCCchheEEEECCCCCEEEEEEEEECCCCCCCCCCe
Confidence            89999999999999987532 2235789999999766578999999999999976  58999999999999999888899


Q ss_pred             EEEeCcccHHHHHhHhC
Q psy2626         339 VYTRVTNYIQWIADNIS  355 (355)
Q Consensus       339 vyt~V~~y~~WI~~~i~  355 (355)
                      |||||++|++||+++|+
T Consensus       233 vyt~V~~y~~WI~~~~~  249 (290)
T 1fiw_A          233 VYTSTWSYLNWIASKIG  249 (290)
T ss_dssp             EEEESGGGHHHHHHHHC
T ss_pred             EEEEHHHhHHHHHHHhC
Confidence            99999999999999874

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=100.00  E-value=3.1e-56  Score=398.13  Aligned_cols=232  Identities=34%  Similarity=0.680  Sum_probs=198.0

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|..++|||||+|....        ..++|+||||+++||||||||+...     ....|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~--------~~~~CgGsLI~~~~VLTAAHC~~~~-----~~~~v~~G~~~~~~~~~~~~   67 (250)
T 1aut_C            1 LIDGKMTRRGDSPWQVVLLDSK--------KKLACGAVLIHPSWVLTAAHCMDES-----KKLLVRLGEYDLRRWEKWEL   67 (250)
T ss_dssp             CBSCEECCTTSCTTEEEEECTT--------SCEEEEEEEEETTEEEECGGGSSSC-----SCCEEEESCCBTTCCCTTCE
T ss_pred             CCCCEECCCCCCCCEEEEecCC--------CceEEEEEEeeCCEEEEChHHcCCC-----CceEEEEcccccCCCCCccE
Confidence            7899999999999999996421        2589999999999999999999641     346799999887643 3467


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCcc-ccccCCCceEEEEeccCCCCCCCC-----c
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLR-SELFERKTPFVAGWGSTVFRGPLS-----P  260 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~-~~~~~~~~~~v~GwG~~~~~~~~~-----~  260 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||...... .....+..++++|||.+.......     .
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~  147 (250)
T 1aut_C           68 DLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTF  147 (250)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSS
T ss_pred             EEEEEEEEECCCCCCCCCCCcEEEEEECCcccCCCceeeeEcCCCccccccccCCCCEEEEEEeCCCCCCCccccccccc
Confidence            8999999999999998889999999999999999999999999643110 112467889999999887544322     4


Q ss_pred             cceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEE
Q psy2626         261 KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVY  340 (355)
Q Consensus       261 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vy  340 (355)
                      .|+++.+++++.++|+..+..   .+.++||||+...++.++|.|||||||++..+++|+|+||+|||..|+..+.|+||
T Consensus       148 ~L~~~~~~i~~~~~C~~~~~~---~~~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vy  224 (250)
T 1aut_C          148 VLNFIKIPVVPHNECSEVMSN---MVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVY  224 (250)
T ss_dssp             BCEEEEEEEECHHHHHHHCSS---CCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEE
T ss_pred             eeeEEEEEEecHHHhhHHhcc---CCCCCEEEeCCCCCCCCCCCCCCchheEEEECCeEEEEEEEEECCCCCCCCCCEEE
Confidence            799999999999999987753   57899999987665789999999999999888999999999999999988889999


Q ss_pred             EeCcccHHHHHhHhC
Q psy2626         341 TRVTNYIQWIADNIS  355 (355)
Q Consensus       341 t~V~~y~~WI~~~i~  355 (355)
                      |||+.|++||+++|+
T Consensus       225 t~V~~y~~WI~~~~~  239 (250)
T 1aut_C          225 TKVSRYLDWIHGHIR  239 (250)
T ss_dssp             ECGGGTHHHHHHHHC
T ss_pred             EEHHHHHHHHHHHhh
Confidence            999999999999874

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=100.00  E-value=2e-56  Score=397.34  Aligned_cols=232  Identities=34%  Similarity=0.656  Sum_probs=200.5

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|..++|||||+|.+..        ..++|+||||+++||||||||+...     ..+.|++|.++.... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~--------~~~~CgGtLIs~~~VLTAAhC~~~~-----~~~~V~~G~~~~~~~~~~~~   67 (241)
T 2jkh_A            1 IVGGQECKDGECPWQALLINEE--------NEGFCGGTILSEFYILTAAHCLYQA-----KRFKVRVGDRNTEQEEGGEA   67 (241)
T ss_dssp             CBSSEECCTTSSTTEEEEECTT--------SCEEEEEEECSSSEEEECGGGGGSC-----SSCEEEESCSBTTCCCSCCE
T ss_pred             CCCCEECCCCCcCcEEEEEcCC--------CCcEEEEEEeeCCEEEEcHHHcCCC-----CcEEEEECCccCCCCCCCcE
Confidence            7899999999999999996421        2579999999999999999999752     257799999887654 3467


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||...........+..++++|||.+...+..+..|+++.
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~  147 (241)
T 2jkh_A           68 VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLE  147 (241)
T ss_dssp             EECEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEE
T ss_pred             EEEeEEEEeCCCCCCCCCCCcEEEEEECCcccCCCCEeeeEcCCCCcccccccCCCeEEEEecCCCCCCCCcCccccEee
Confidence            88999999999999988899999999999999999999999996542111234678899999999876665678899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.+.|+..+.   ..+.++||||+...++.++|.|||||||++..+++|+|+||+|||..|+..+.|++||||+.|
T Consensus       148 ~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~  224 (241)
T 2jkh_A          148 VPYVDRNSCKLSSS---FIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF  224 (241)
T ss_dssp             EEEECHHHHHHHCS---SCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGG
T ss_pred             eccccHHHhccccc---CcCCCCeEEeeCCCCCCccCcCcCCCeeEEEECCEEEEEEEEEECCCCCCCCCceEEEEhHHH
Confidence            99999999998764   357899999987665789999999999999988999999999999999988889999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       225 ~~WI~~~~~  233 (241)
T 2jkh_A          225 LKWIDRSMK  233 (241)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhc
Confidence            999999885

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=100.00  E-value=4.5e-56  Score=394.94  Aligned_cols=233  Identities=35%  Similarity=0.693  Sum_probs=199.4

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|.+..     .+...++|+||||+++||||||||+..  .   ..+.|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~-----~~~~~~~CgGtLI~~~~VLTAAHC~~~--~---~~~~V~~G~~~~~~~~~~~~   70 (241)
T 1bru_P            1 VVGGEDARPNSWPWQVSLQYDS-----SGQWRHTCGGTLVDQSWVLTAAHCISS--S---RTYRVVLGRHSLSTNEPGSL   70 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEE-----TTEEEEEEEEEEEETTEEEECGGGCCT--T---SCEEEEESCSBSSSCCTTCE
T ss_pred             CCCCeECCCCCcCcEEEEEEec-----CCceeeEEEeEEeeCCEEEEcHHhccc--C---CceEEEEEcccccCCCCccE
Confidence            7899999999999999998743     222358999999999999999999963  1   457899999887654 3568


Q ss_pred             EEEEeeeEeCCCCCCCCCC--CCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceE
Q psy2626         187 SIEIERPIIHEQYTSARKL--NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRH  264 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~--~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~  264 (355)
                      .+.|+++++||+|+.....  ||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|++
T Consensus        71 ~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~L~~  147 (241)
T 1bru_P           71 AVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGT---ILPNNYVCYVTGWGRLQTNGASPDILQQ  147 (241)
T ss_dssp             EEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTC---CCCTTCEEEEEESCCSSTTSCCCSBCEE
T ss_pred             EEEEEEEEECCCCCCCCCCCCCcEEEEEeCCCcccCCccCCcccCCCcC---CCCCCCEEEEEEccccCCCCCCCcccee
Confidence            8999999999999988777  9999999999999999999999997653   2356788999999998766666788999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeee-CCeEEEEEEEEeCC--CCCCCCCCcEEE
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGK--KCAEVGFPGVYT  341 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-~~~~~lvGI~S~g~--~C~~~~~p~vyt  341 (355)
                      +.+++++.+.|+..+. ++..+.+.||||+. .++.++|+|||||||++.. +++|+|+||+|||.  +|+..+.|+|||
T Consensus       148 ~~~~i~~~~~C~~~~~-~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt  225 (241)
T 1bru_P          148 GQLLVVDYATCSKPGW-WGSTVKTNMICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFT  225 (241)
T ss_dssp             EEEEEECHHHHTSTTT-TGGGCCTTEEEECC-SSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECBTTBSSCTTCCEEEE
T ss_pred             CEEEEecHHHhCcccc-cCCcCCCceEeecC-CCCCccCCCCCCCcEEEECCCCCEEEEEEEEEcCCCCCCCCCCCcEEE
Confidence            9999999999987632 12357899999985 3468999999999999986 68999999999997  798878899999


Q ss_pred             eCcccHHHHHhHhC
Q psy2626         342 RVTNYIQWIADNIS  355 (355)
Q Consensus       342 ~V~~y~~WI~~~i~  355 (355)
                      ||++|++||+++|+
T Consensus       226 ~V~~~~~WI~~~i~  239 (241)
T 1bru_P          226 RVSNYIDWINSVIA  239 (241)
T ss_dssp             EGGGSHHHHHHHHH
T ss_pred             EHHHhHHHHHHHHh
Confidence            99999999999873

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=100.00  E-value=9.4e-56  Score=395.04  Aligned_cols=234  Identities=29%  Similarity=0.630  Sum_probs=203.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCC-----------CCcCceEEEecc
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTT-----------GEYEPYIVHVGS  176 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~-----------~~~~~~~v~~G~  176 (355)
                      |+||++|.+++|||||+|.+..        ..++|+||||+++||||||||+.....           .....+.|++|.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~--------~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~   72 (251)
T 3gov_B            1 IFNGRPAQKGTTPWIAMLSHLN--------GQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGK   72 (251)
T ss_dssp             CBTCEECCTTSCTTEEEEEETT--------CCEEEEEEEETTTEEEECGGGGBCCCCTTSCCCCGGGBCCGGGEEEEESC
T ss_pred             CCCCEECCCCCcCeEEEEeccC--------CCeeEEEEEecCCEEEECHhhccccccccccccccccccccccEEEEecc
Confidence            7899999999999999997532        247899999999999999999965211           233568899999


Q ss_pred             ccccCC-CCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCC
Q psy2626         177 IDLEDT-SSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFR  255 (355)
Q Consensus       177 ~~~~~~-~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~  255 (355)
                      ++.... ...+.+.|+++++||+|+.....||||||||++|+.|+++++|||||....     ..+..++++|||.+...
T Consensus        73 ~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~picLp~~~~-----~~~~~~~v~GwG~~~~~  147 (251)
T 3gov_B           73 HWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQ-----QEGAMVIVSGWGKQFLQ  147 (251)
T ss_dssp             CBSSSCCSSCEEECEEEEEECTTCBTTTTBTCCEEEEESSCCCCSSSCCCCBCCSSCC-----CTTCEEEEEECSCCTTS
T ss_pred             eeccCCCCcceEeeeEEEEECCCCCCCCCCCCEEEEEeCCcccCCCceEEeECCCCCC-----CCCCEEEEEcCCCCCCC
Confidence            877443 466889999999999999998899999999999999999999999997653     56788999999998765


Q ss_pred             CCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceee--eCCeEEEEEEEEeCCCCCC
Q psy2626         256 GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP--LDTKYYIIGVVSYGKKCAE  333 (355)
Q Consensus       256 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~--~~~~~~lvGI~S~g~~C~~  333 (355)
                      . .+..|+++.+++++.+.|+..+......+++.||||+...++.++|+|||||||++.  .+++|+|+||+|||..|+.
T Consensus       148 ~-~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~~l~Gi~S~g~~C~~  226 (251)
T 3gov_B          148 R-FPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGK  226 (251)
T ss_dssp             C-CCSBCEEEEEEEECHHHHHHHTTTTTCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSC
T ss_pred             C-CCccceEEeeEEECHHHhhhhhhhccCCCCCCcEEecCCCCCCccCCCCCCCeEEeeeCCCCcEEEEEEEEECCCCCC
Confidence            4 788899999999999999998876555788999999987767899999999999997  4589999999999999998


Q ss_pred             CCCCcEEEeCcccHHHHHhHhC
Q psy2626         334 VGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       334 ~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      .+.|++||||++|++||+++|+
T Consensus       227 ~~~p~vyt~V~~~~~WI~~~~~  248 (251)
T 3gov_B          227 KDRYGVYSYIHHNKDWIQRVTG  248 (251)
T ss_dssp             SSCCEEEEETTTTHHHHHHHHC
T ss_pred             CCCCEEEEEHHHhHHHHHHHhc
Confidence            8889999999999999999874

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=100.00  E-value=7.6e-56  Score=402.73  Aligned_cols=244  Identities=36%  Similarity=0.648  Sum_probs=205.6

Q ss_pred             CCCCCCcC---CCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEE
Q psy2626          96 ECGVNAFN---SSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIV  172 (355)
Q Consensus        96 ~CG~~~~~---~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v  172 (355)
                      .||.....   ...||+||.+|..++|||||+|++.          .++|+||||+++||||||||+...  .....+.|
T Consensus        21 ~CG~~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~----------~~~CgGsLIs~~~VLTAAHC~~~~--~~~~~~~V   88 (283)
T 1yc0_A           21 ACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIG----------DSFCAGSLVHTCWVVSAAHCFSHS--PPRDSVSV   88 (283)
T ss_dssp             CCSCCSCC-------CBSCEECCTTSSTTEEEEEET----------TEEEEEEEEETTEEEECGGGGTTC--CCGGGEEE
T ss_pred             CcCCcccccccCcCceECCeECCCCCCCeEEEEEcC----------CcEEEEEEeeCCEEEECHHHcCCC--CCCceEEE
Confidence            79987532   1359999999999999999999642          378999999999999999999752  22356889


Q ss_pred             EeccccccCC-CCcEEEEEeeeEeCCCCCC-CCCCCCeEEEEeCCC----CCCCCCccccccCCCCCccccccCCCceEE
Q psy2626         173 HVGSIDLEDT-SSGVSIEIERPIIHEQYTS-ARKLNDIALFRLRED----APLSDLIQPICLPYDTNLRSELFERKTPFV  246 (355)
Q Consensus       173 ~~G~~~~~~~-~~~~~~~v~~i~~hp~y~~-~~~~~DIALl~L~~~----v~~~~~v~picLp~~~~~~~~~~~~~~~~v  246 (355)
                      ++|.+++... ...+.+.|+++++||+|+. ....||||||||+++    +.|+++++|||||....   ....+..+++
T Consensus        89 ~~G~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~~~~~v~~~~~v~picLp~~~~---~~~~g~~~~v  165 (283)
T 1yc0_A           89 VLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGS---TFPAGHKCQI  165 (283)
T ss_dssp             EESCCBTTCCCSSCEEECEEEEEECTTCCTTSTTTTCCEEEEECCBTTBSSCCBTTBCCCBCCCTTC---CCCTTCEEEE
T ss_pred             EEeeeecccCCCceEEEeeEEEEecCccccCCCCCCceEEEEeCCCccccccccCceeeeECCCCcC---CCCCCCEEEE
Confidence            9999887654 3468899999999999998 777899999999999    89999999999997543   3457889999


Q ss_pred             EEeccCCCCCC-CCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEE
Q psy2626         247 AGWGSTVFRGP-LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVV  325 (355)
Q Consensus       247 ~GwG~~~~~~~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~  325 (355)
                      +|||.+..... .+..|+++.+++++.++|+..+. ++..+.+.||||+...++.++|+|||||||++..+++|+|+||+
T Consensus       166 ~GwG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~-~~~~~~~~~iCa~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GIv  244 (283)
T 1yc0_A          166 AGWGHLDENVSGYSSSLREALVPLVADHKCSSPEV-YGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGII  244 (283)
T ss_dssp             EESSCSBTTBCSCCSBCEEEEEEBCCHHHHTSTTT-TGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEE
T ss_pred             EEeCccCCCCCccCchheEeEEEEECHHHhcCccc-cCCcCCCCEEeeCCCCCCCccCCCCCCCceEEEECCcEEEEEEE
Confidence            99999875432 47889999999999999987432 22357899999997665789999999999999989999999999


Q ss_pred             EeCCCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         326 SYGKKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       326 S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      |||..|+..+.|+|||||++|++||+++|+
T Consensus       245 S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  274 (283)
T 1yc0_A          245 SWGDGCGRLHKPGVYTRVANYVDWINDRIR  274 (283)
T ss_dssp             EECSTTTCTTCCEEEEEGGGGHHHHHHHCC
T ss_pred             EECCCCCCCCCCeEEEEhhhHHHHHHHHhc
Confidence            999999988889999999999999999874

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=100.00  E-value=7.9e-56  Score=397.94  Aligned_cols=234  Identities=32%  Similarity=0.693  Sum_probs=203.3

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|..++|||||+|.+..         .++|+||||+++||||||||+..  ......+.|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---------~~~CgGtLI~~~~VLTAAhC~~~--~~~~~~~~v~~g~~~~~~~~~~~~   69 (261)
T 3gyl_B            1 ITGGSSAVAGQWPWQVSITYEG---------VHVCGGSLVSEQWVLSAAHCFPS--EHHKEAYEVKLGAHQLDSYSEDAK   69 (261)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT---------EEEEEEEECSSSEEEECGGGSCT--TSCGGGEEEEESCSBTTSCCSSCE
T ss_pred             CCCCcCCCCCCCCcEEEEeeCC---------ceEEEEEEEcCCEEEECHHHCCC--CCCcccEEEEeCceeccCCCCCce
Confidence            7899999999999999997642         47999999999999999999964  2233568899999887654 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCC--CCccceE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP--LSPKLRH  264 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~--~~~~l~~  264 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+.....  .+..|++
T Consensus        70 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~~~l~~  146 (261)
T 3gyl_B           70 VSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQA---SFPNGLHCTVTGWGHVAPSVSLLTPKPLQQ  146 (261)
T ss_dssp             EECEEEEEECTTCCSTTCSCCCEEEEESSCCCCBTTBCCCBCCCTTC---CCCTTCEEEEEESSCSBTTBCCCTTCBCEE
T ss_pred             EEEEEEEEECCCcCCCCCCCcEEEEEECCCccCCCceeccCCCCccc---CCCCCCEEEEEecCCCCCCCCccCCccceE
Confidence            88999999999999988899999999999999999999999997653   345788899999998875443  3778999


Q ss_pred             EEEeeeChhHHHhhhhcC-----CCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcE
Q psy2626         265 VQISVVDNPKCRQIFSNY-----GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV  339 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~-----~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~v  339 (355)
                      +.+++++.+.|+..+...     ...+.++||||+...++.++|.|||||||++..+++|+|+||+|||..|+..+.|++
T Consensus       147 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~lvGI~S~g~~c~~~~~p~v  226 (261)
T 3gyl_B          147 LEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGV  226 (261)
T ss_dssp             EEEEEECHHHHHHHHTTTCCTTCCCCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEECCCCCSSCTTCCEE
T ss_pred             EEEEEECHHHhhhhhcccccccccccccCCeEeeCCCCCCCccCCCCCCCeeEEEeCCEEEEEEEEecCCCCCCCCCCCE
Confidence            999999999999987632     135789999998766678999999999999999999999999999999998888999


Q ss_pred             EEeCcccHHHHHhHhC
Q psy2626         340 YTRVTNYIQWIADNIS  355 (355)
Q Consensus       340 yt~V~~y~~WI~~~i~  355 (355)
                      ||||+.|++||+++|+
T Consensus       227 yt~v~~~~~WI~~~i~  242 (261)
T 3gyl_B          227 YTLASSYASWIQSKVT  242 (261)
T ss_dssp             EEEGGGGHHHHHHHHH
T ss_pred             EEEHHHhHHHHHHHHh
Confidence            9999999999999873

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=100.00  E-value=5.8e-56  Score=417.82  Aligned_cols=244  Identities=34%  Similarity=0.738  Sum_probs=204.5

Q ss_pred             CCCCCCcCCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEec
Q psy2626          96 ECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVG  175 (355)
Q Consensus        96 ~CG~~~~~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G  175 (355)
                      .||... ....||+||.+|.+++|||||+|++..         .++|+||||+++||||||||+... ......+.|++|
T Consensus       107 ~Cg~~~-~~~~rIvgG~~a~~~~~Pw~v~l~~~~---------~~~CgGsLIs~~~VLTAAHCv~~~-~~~~~~~~V~~G  175 (372)
T 1z8g_A          107 DCGRRK-LPVDRIVGGRDTSLGRWPWQVSLRYDG---------AHLCGGSLLSGDWVLTAAHCFPER-NRVLSRWRVFAG  175 (372)
T ss_dssp             CCSCCC-CC---CBSCEECCTTSSTTEEEEEETT---------EEEEEEEESSSSEEEECGGGCCGG-GCCGGGEEEEES
T ss_pred             ccCCcC-CCCCceECCEECCCCCCCcEEEEEeCC---------ceEEEEEEecCCEEEEChhhcCCC-CCccceEEEEEe
Confidence            588763 245799999999999999999997632         489999999999999999999531 122356789999


Q ss_pred             cccccCCCCcEEEEEeeeEeCCCC------CCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEe
Q psy2626         176 SIDLEDTSSGVSIEIERPIIHEQY------TSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGW  249 (355)
Q Consensus       176 ~~~~~~~~~~~~~~v~~i~~hp~y------~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~Gw  249 (355)
                      .++.... ..+.+.|+++++||+|      +.....||||||||++|+.|+++|+|||||....   ....+..++++||
T Consensus       176 ~~~~~~~-~~~~~~V~~i~~Hp~y~~~~~~~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~---~~~~g~~~~v~GW  251 (372)
T 1z8g_A          176 AVAQASP-HGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQ---ALVDGKICTVTGW  251 (372)
T ss_dssp             CSBTTCT-TSEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTC---CCCTTCEEEEEES
T ss_pred             eEeccCC-CCcEEEEEEEEECCCccccccCCCCCCCccEEEEEECCCCCCCCceeccccCCccc---CCCCCCEEEEEec
Confidence            9876543 4467899999999999      6677889999999999999999999999997643   3456889999999


Q ss_pred             ccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeC----CeEEEEEEE
Q psy2626         250 GSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLD----TKYYIIGVV  325 (355)
Q Consensus       250 G~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~----~~~~lvGI~  325 (355)
                      |.+...+..+..|+++.+++++++.|+.... ++..++++||||+...++.++|+|||||||++..+    ++|+|+||+
T Consensus       252 G~t~~~~~~~~~L~~~~v~ii~~~~C~~~~~-~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~~~~~lvGIv  330 (372)
T 1z8g_A          252 GNTQYYGQQAGVLQEARVPIISNDVCNGADF-YGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIV  330 (372)
T ss_dssp             SBSSTTSCBCSBCEEEEEEEECHHHHTSTTT-TTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEE
T ss_pred             CCCCCCCCCCceeeEEEEEecChHHhCcchh-cCCcCCCCeEeeecCCCCCcCCCCCCccceEeccCcCCCCCEEEEEEE
Confidence            9998766678899999999999999986421 23467899999997666789999999999999875    899999999


Q ss_pred             EeCCCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         326 SYGKKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       326 S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      |||.+|+..+.|+|||||+.|++||+++|+
T Consensus       331 S~G~~C~~~~~p~vyt~V~~y~~WI~~~i~  360 (372)
T 1z8g_A          331 SWGTGCALAQKPGVYTKVSDFREWIFQAIK  360 (372)
T ss_dssp             EEBSSSSCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             EeCCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            999999988899999999999999999873

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=100.00  E-value=9.9e-56  Score=395.37  Aligned_cols=239  Identities=33%  Similarity=0.612  Sum_probs=201.0

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|++....   .....++|+||||+++||||||||+...  .....+.|++|.++.... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~---~~~~~~~CgGtLI~~~~VLTAAHC~~~~--~~~~~~~V~~G~~~~~~~~~~~~   75 (252)
T 1rtf_B            1 IKGGLFADIASHPWQAAIFAKHRR---SPGERFLCGGILISSCWILSAAHCFQER--FPPHHLTVILGRTYRVVPGEEEQ   75 (252)
T ss_dssp             CBSSEECCGGGSTTEEEEEEEC-------CEEEEEEEEECSSSEEEECGGGGTTC--CCGGGEEEEESCSBSSSCCTTCE
T ss_pred             CCCCeECCCCCcCCEEEEEEecCC---CCCCCEEEEEEEEeCCEEEECHHHCCCC--CCcccEEEEeCcccccCCCCcce
Confidence            789999999999999999875320   1234689999999999999999999752  223568899999876543 4568


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCC----CCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC-CCCcc
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLRED----APLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPK  261 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~----v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~  261 (355)
                      .+.|+++++||+|+.....||||||||++|    +.|+++++|||||....   ....+..++++|||.+.... ..+..
T Consensus        76 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~~  152 (252)
T 1rtf_B           76 KFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADL---QLPDWTECELSGYGKHEALSPFYSER  152 (252)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEECCSSSCCSCCBTTBCCCBCCCTTC---CCCTTCEEEEEESCCSSTTCSSCCSB
T ss_pred             EEEEEEEEeCCCCCcCCCCCCEEEEEECCccccccccCCceeceeCCCccc---cCCCCCEEEEEEcCCCCCCCccccch
Confidence            899999999999999888999999999999    89999999999997653   33467889999999987543 35778


Q ss_pred             ceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCC------CCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCC
Q psy2626         262 LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGG------KDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVG  335 (355)
Q Consensus       262 l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~------~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~  335 (355)
                      |+++.+++++.+.|+..+.. +..+.++||||+...++      .++|+|||||||++..+++|+|+||+|||..|+..+
T Consensus       153 L~~~~~~~~~~~~C~~~~~~-~~~~~~~~~Ca~~~~~~~~~~~~~~~C~GDsGgPL~~~~~~~~~l~Gi~S~g~~C~~~~  231 (252)
T 1rtf_B          153 LKEAHVRLYPSSRCTSQHLL-NRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKD  231 (252)
T ss_dssp             CEEEEEEECCGGGSSTTTTT-TCCCCTTEEEEECCC------CCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTT
T ss_pred             heEeeeEEecHHHhhhhhcc-CCCCCCCEEEecCCCCCCccCCCCccccCCCcCceEEEeCCcEEEEEEEEEcCCCCCCC
Confidence            99999999999999876532 23578999999875533      789999999999999889999999999999999878


Q ss_pred             CCcEEEeCcccHHHHHhHhC
Q psy2626         336 FPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       336 ~p~vyt~V~~y~~WI~~~i~  355 (355)
                      .|+|||||+.|++||+++|+
T Consensus       232 ~p~vyt~V~~y~~WI~~~~~  251 (252)
T 1rtf_B          232 VPGVYTKVTNYLDWIRDNMR  251 (252)
T ss_dssp             CCEEEEEGGGGHHHHHHHCC
T ss_pred             CCeEEEEHHHHHHHHHHhcC
Confidence            89999999999999999985

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=100.00  E-value=4e-57  Score=420.74  Aligned_cols=238  Identities=29%  Similarity=0.559  Sum_probs=192.6

Q ss_pred             CCCCCCc--CCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEE
Q psy2626          96 ECGVNAF--NSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVH  173 (355)
Q Consensus        96 ~CG~~~~--~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~  173 (355)
                      .||+...  ....||+||++|.+++|||||+|.+..         .++||||||+++||||||||+.....   ....+.
T Consensus        89 ~CG~p~~~~~~~~RIvGG~~a~~g~~Pw~v~l~~~~---------~~~CGGsLIs~~~VLTAAHCv~~~~~---~~~~~~  156 (347)
T 4f4o_C           89 VCGKPKNPVDQVQRIMGGSLDAKGSFPWQAKMISHH---------NLTSGATLINEQWLLTTAKNLRLGHK---NDTKAK  156 (347)
T ss_dssp             CCSCCSSCC-----CCSCCBCCSCCCTTCEEEECTT---------CCEEECCBCSSSEEEECHHHHTTTSC---TTCCHH
T ss_pred             CCCCCCCCCCCCCeEECCEECCCCCCCcEEEEEeCC---------CEEEEEEEEcCCEEEeCcccccCCCC---CcceEE
Confidence            7998542  245799999999999999999996532         47999999999999999999965222   122222


Q ss_pred             ecccccc-CCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccC
Q psy2626         174 VGSIDLE-DTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST  252 (355)
Q Consensus       174 ~G~~~~~-~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~  252 (355)
                      .+..... .....+.+.|+++++||+|+    .||||||||++|+.|+++|+|||||....    ...+..++++|||.+
T Consensus       157 ~~~~~~~~~~~~~~~~~V~~i~~HP~y~----~nDIALlkL~~~v~~~~~v~PicLp~~~~----~~~g~~~~v~GWG~~  228 (347)
T 4f4o_C          157 DIAPTLRLYVGKKQEVEIEKVIFHPDNS----TVDIGLIKLKQKVPVNERVMPICLPSKDY----VNVGLVGYVSGWGRN  228 (347)
T ss_dssp             HHGGGCEEEETTTEEECEEEEEECSCTT----TCCCEEEEESSCCCCSSSCCCCBCCSSCC----CCTTCEEEEEECSBC
T ss_pred             eeeeeeeecCCCeEEEEEEEEEECcCCC----CCCEEEEEECCCccCCCceeeeecCcccc----CCCCcEEEEeccccC
Confidence            3322221 12456788999999999996    38999999999999999999999997653    456888999999998


Q ss_pred             CCCCCCCccceEEEEeeeChhHHHhhhhcC--------------CCCCCCCeEEecccCCCCCCCcCCCCCcceeee--C
Q psy2626         253 VFRGPLSPKLRHVQISVVDNPKCRQIFSNY--------------GATINENILCAGVLSGGKDSCGGDSGGPLMYPL--D  316 (355)
Q Consensus       253 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~--------------~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~--~  316 (355)
                      .... .+..|+++.++++++++|++.|...              ...++++||||+...++.++|+|||||||++..  +
T Consensus       229 ~~~~-~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iCAG~~~~~~d~C~GDSGGPLv~~~~~~  307 (347)
T 4f4o_C          229 ANLN-FTEHLKYVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDD  307 (347)
T ss_dssp             TTSS-BCSSCEEEEEEEECHHHHHHHHSSCSSGGGCCCCCSSSSCCCCSTTEEEECCCTTCCCCCTTCTTCEEEEEETTT
T ss_pred             CCCC-CCccceEEEEEEeCHHHHHHHhccccccccccccccccccccccCCeEEecCCCCCCCCCCCCCCcceEEEeCCC
Confidence            7554 6889999999999999999887532              234788999999877789999999999999864  5


Q ss_pred             CeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         317 TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       317 ~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      ++|+|+||+|||.+|+. +.|+|||||++|++||+++|+
T Consensus       308 ~~~~lvGIvS~G~~C~~-~~pgVYTrVs~y~~WI~~~i~  345 (347)
T 4f4o_C          308 DTWYAAGILSFDKSCRT-AEYGVYVRVTSILDWIQTTIA  345 (347)
T ss_dssp             TEEEEEEEEEECCCTTT-SSCEEEEEHHHHHHHHHHHHT
T ss_pred             CEEEEEEEEEeCCCCCC-CCCeEEEEHHHHHHHHHHHHH
Confidence            89999999999999986 469999999999999999985

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=100.00  E-value=1.2e-55  Score=393.69  Aligned_cols=239  Identities=34%  Similarity=0.663  Sum_probs=199.8

Q ss_pred             CCCCCCcC---CCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEE
Q psy2626          96 ECGVNAFN---SSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIV  172 (355)
Q Consensus        96 ~CG~~~~~---~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v  172 (355)
                      .||.....   ...||+||++|.+++|||||+|.+..        ..++|+||||+++||||||||+...  .....+.|
T Consensus         3 ~cg~~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~--------~~~~CgGsLIs~~~VLTAAHC~~~~--~~~~~~~v   72 (247)
T 1ddj_A            3 DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRF--------GMHFCGGTLISPEWVLTAAHCLEKS--PRPSSYKV   72 (247)
T ss_dssp             CTTCCSSCCCCCCTTCTTCEECCTTSSTTEEEEECTT--------SCEEEEEEEEETTEEEECGGGGTTC--SCGGGCEE
T ss_pred             ccCCCCCCCcccCCCcCCCEECCCCCCCcEEEEEcCC--------CCeEEEEEEeeCCEEEEcHHHcCCC--CCCccEEE
Confidence            58875432   14699999999999999999996531        2489999999999999999999752  22346789


Q ss_pred             EeccccccCC-CCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEecc
Q psy2626         173 HVGSIDLEDT-SSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGS  251 (355)
Q Consensus       173 ~~G~~~~~~~-~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~  251 (355)
                      ++|.++.... ...+.+.|.+++.||.+      ||||||||++|+.|+++++|||||....   ....+..++++|||.
T Consensus        73 ~~G~~~~~~~~~~~~~~~v~~~~~hp~~------~DIALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~  143 (247)
T 1ddj_A           73 ILGAHQEVNLEPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPNY---VVADRTECFITGWGE  143 (247)
T ss_dssp             EESCSBSSSCCTTCEEEEEEEEEECTTS------CSCEEEEESSCCCCCSSCCCCBCCCTTC---CCCTTCEEEEEECCC
T ss_pred             EEcccccCccCCceEEEEeeeEEcCCCC------CcEEEEEeCCceeeCCCEEeeecCCccc---CCCCCCEEEEEEccc
Confidence            9999876543 45678899999999963      8999999999999999999999997653   335678899999999


Q ss_pred             CCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCC
Q psy2626         252 TVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKC  331 (355)
Q Consensus       252 ~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C  331 (355)
                      +.... .+..|+++.+++++.+.|+.... ....+.+.||||+...++.++|+|||||||++..+++|+|+||+|||..|
T Consensus       144 ~~~~~-~~~~L~~~~~~i~~~~~C~~~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~C  221 (247)
T 1ddj_A          144 TQGTF-GAGLLKEAQLPVIENKVCNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGC  221 (247)
T ss_dssp             CSSST-TTTBCEEEEEEEECHHHHTSTTT-TTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEECSSSEEEEEEECGGGCC
T ss_pred             CCCCC-CCccceEEeeeecCHHHhcchhc-cCCCCcCCeEeecCCCCCCccccCcCcCcEEEEECCcEEEEEEEEECCCC
Confidence            86443 56789999999999999987432 12357889999987665789999999999999888999999999999999


Q ss_pred             CCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         332 AEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       332 ~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      +..+.|+|||||+.|++||+++|+
T Consensus       222 ~~~~~p~vyt~V~~y~~WI~~~~~  245 (247)
T 1ddj_A          222 ARPNKPGVYVRVSRFVTWIEGVMR  245 (247)
T ss_dssp             BBTTBCEEEEEGGGSHHHHHHHHH
T ss_pred             CCCCCCEEEEEhHHhHHHHHHHhh
Confidence            988889999999999999999874

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=100.00  E-value=1.1e-55  Score=392.30  Aligned_cols=233  Identities=32%  Similarity=0.632  Sum_probs=199.1

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|.+..     +....++|+||||+++||||||||+...     ..+.|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~-----~~~~~~~CgGsLI~~~~VLTAAHC~~~~-----~~~~v~~G~~~~~~~~~~~~   70 (240)
T 1gvk_B            1 VVGGTEAQRNSWPSQISLQYRS-----GSSWAHTCGGTLIRQNWVMTAAHCVDRE-----LTFRVVVGEHNLNQNNGTEQ   70 (240)
T ss_dssp             CBTCEECCTTSCTTEEEEEEEE-----TTEEEEEEEEEEEETTEEEECGGGGCSC-----CCEEEEESCSBTTSCCSCCE
T ss_pred             CCCCeECCCCCcCEEEEEEecC-----CCccCceEEEEEeeCCEEEECHHHCCCC-----cceEEEECCeecccCCCcce
Confidence            7899999999999999997532     1112489999999999999999999652     457899999987654 3467


Q ss_pred             EEEEeeeEeCCCCCCCCC--CCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceE
Q psy2626         187 SIEIERPIIHEQYTSARK--LNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRH  264 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~--~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~  264 (355)
                      .+.|+++++||+|+....  .||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|++
T Consensus        71 ~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~pi~lp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~L~~  147 (240)
T 1gvk_B           71 YVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGT---ILANNSPCYITGWGLTRTNGQLAQTLQQ  147 (240)
T ss_dssp             EEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTC---CCCTTCCEEEEESCBSSTTCCBCSBCEE
T ss_pred             EEEEEEEEECCCCCCCCCCCCCcEEEEEECCccccCCCccceecCCCCC---CCCCCCEEEEEecCcCCCCCCcchhccE
Confidence            899999999999998876  79999999999999999999999997653   2456788999999998766667788999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC--CCCCCCCCcEEEe
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--KCAEVGFPGVYTR  342 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~--~C~~~~~p~vyt~  342 (355)
                      +.+++++.+.|+..+. ++..+.+.||||+. .++.++|+|||||||++..+++|+|+||+|||.  +|+..+.|+||||
T Consensus       148 ~~~~~~~~~~C~~~~~-~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~  225 (240)
T 1gvk_B          148 AYLPTVDYAICSSSSY-WGSTVKNSMVCAGG-DGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTR  225 (240)
T ss_dssp             EECCEECHHHHTSTTT-TGGGCCTTEEEECC-SSSCBCCTTCTTCEEEEEETTEEEEEEEEEECBTTBSSCTTCCEEEEE
T ss_pred             EEEEEEcHHHhccccc-cCccCCcceEeecC-CCCCcccCCCCcCceEEEECCcEEEEEEEEEeCCCCCCCCCCCcEEEe
Confidence            9999999999987532 12357899999985 346899999999999998889999999999995  6988788999999


Q ss_pred             CcccHHHHHhHhC
Q psy2626         343 VTNYIQWIADNIS  355 (355)
Q Consensus       343 V~~y~~WI~~~i~  355 (355)
                      |+.|++||+++|+
T Consensus       226 V~~~~~WI~~~i~  238 (240)
T 1gvk_B          226 VSAYISWINNVIA  238 (240)
T ss_dssp             GGGSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999873

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=100.00  E-value=1.2e-55  Score=391.42  Aligned_cols=231  Identities=31%  Similarity=0.620  Sum_probs=200.3

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|.+..       ...++|+||||+++||||||||+...   ....+.|++|.++.... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~-------~~~~~CgGtLIs~~~VLTAAHC~~~~---~~~~~~v~~G~~~~~~~~~~~~   70 (238)
T 1ym0_A            1 IVGGIEARPYEFPWQVSVRRKS-------SDSHFCGGSIINDRWVVCAAHCMQGE---APALVSLVVGEHDSSAASTVRQ   70 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEEGG-------GTEEEEEEEEEETTEEEECHHHHTTC---CGGGEEEEESCSBTTSCCSSCE
T ss_pred             CCCCEECCCCccCCEEEEEeCC-------CCceEEEEEEeeCCEEEECHHhCCCC---CCceEEEEEcccccCCCCCCce
Confidence            6899999999999999997643       13589999999999999999999752   23568899999887654 3468


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCC-CccceEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL-SPKLRHV  265 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~-~~~l~~~  265 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....    ...+..++++|||.+...+.. +..|+++
T Consensus        71 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~----~~~~~~~~~~GwG~~~~~~~~~~~~l~~~  146 (238)
T 1ym0_A           71 THDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPAN----DYVYRKSQCSGWGTINSGGVCCPAVLRYV  146 (238)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCSSSCCCCBCCCTTC----CCTTCEEEEEESCCSSTTCCSCCSBCEEE
T ss_pred             EEEEEEEEECCCCCCCCCcccEEEEEeCCCccccCcccccCCCCCcC----CCCCCceEEEeecCCCCCCCcCCccceEE
Confidence            89999999999999988899999999999999999999999997653    236788999999998765543 7889999


Q ss_pred             EEeeeChhHHHhhhhcCCCCCCCCeEEecccCCC--CCCCcCCCCCcceeee-CCeEEEEEEEEeCCCCCCCCCCcEEEe
Q psy2626         266 QISVVDNPKCRQIFSNYGATINENILCAGVLSGG--KDSCGGDSGGPLMYPL-DTKYYIIGVVSYGKKCAEVGFPGVYTR  342 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~--~~~C~GDsGgPL~~~~-~~~~~lvGI~S~g~~C~~~~~p~vyt~  342 (355)
                      .+++++.+.|+..+..  ..+.+.||||+...+.  .++|+|||||||++.. +++|+|+||+|||..|+ .+.|+||||
T Consensus       147 ~~~~~~~~~C~~~~~~--~~~~~~~~Ca~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~C~-~~~p~vyt~  223 (238)
T 1ym0_A          147 TLNITTNAFCDAVYTS--DTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCA-SGYPGVYSR  223 (238)
T ss_dssp             EEEECCHHHHHHHCTT--SCCCTTEEEEECSSCSSSCBCCTTTTTCEEEEECTTCCEEEEEEEEECSSSS-SSSCEEEEE
T ss_pred             EEEeeCHHHHhHhhcc--cccCCCeEEecCCCCCCcCccCCCccCCeeEEECCCCCEEEEEEEeECCCCC-CCCCcEEEE
Confidence            9999999999988753  2578999999876544  7999999999999987 68999999999999998 678999999


Q ss_pred             CcccHHHHHhHhC
Q psy2626         343 VTNYIQWIADNIS  355 (355)
Q Consensus       343 V~~y~~WI~~~i~  355 (355)
                      |+.|++||+++|+
T Consensus       224 v~~~~~WI~~~i~  236 (238)
T 1ym0_A          224 VGFHAGWITDTIT  236 (238)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhc
Confidence            9999999999874

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=100.00  E-value=6.2e-56  Score=392.61  Aligned_cols=230  Identities=32%  Similarity=0.700  Sum_probs=198.7

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|....         .++|+||||+++||||||||+...     ....|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---------~~~CgGtLIs~~~VLTAAhC~~~~-----~~~~v~~G~~~~~~~~~~~~   66 (235)
T 2wph_S            1 VVGGEDAKPGQFPWQVVLNGKV---------DAFCGGSIVNEKWIVTAAHCVETG-----VKITVVAGEHNIEETEHTEQ   66 (235)
T ss_dssp             CBSCEECCTTSSTTEEEEESSS---------TTCEEEEEEETTEEEECGGGCCTT-----SCCEEEESCCBTTSCCSCCE
T ss_pred             CCCCEECCCCCCCeEEEEccCC---------CeeEEEEEEeCCEEEECHHHCcCC-----CCEEEEEcccccCCCCCCcE
Confidence            6899999999999999996421         478999999999999999999641     247799999887654 3467


Q ss_pred             EEEEeeeEeCCCCCC--CCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceE
Q psy2626         187 SIEIERPIIHEQYTS--ARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRH  264 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~--~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~  264 (355)
                      .+.|+++++||+|+.  ....||||||||++|+.|+++++|||||..... .....+..++++|||.+...+..+..|++
T Consensus        67 ~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~l~~  145 (235)
T 2wph_S           67 KRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYT-NIFLKFGSGYVSGWGRVFHKGRSALVLQY  145 (235)
T ss_dssp             EEEEEEEEECTTTTSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCHHHH-HHHHHTCEEEEEESSBSSTTSCBCSBCEE
T ss_pred             EeeeEEEEeCCCCcccCCcCCCCEEEEEECCcCcCCCCccccCCCCCccc-ccccCCccEEEEeCCCccCCCCccchheE
Confidence            889999999999998  677799999999999999999999999964321 01235678999999998776667788999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCc
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT  344 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~  344 (355)
                      +.+++++.+.|+..+.   ..+.+.||||+...++.++|+|||||||++..+++|+|+||+|||..|+..+.|+|||||+
T Consensus       146 ~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~  222 (235)
T 2wph_S          146 LRVPLVDRATCLRSTK---FTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVS  222 (235)
T ss_dssp             EEEEEECHHHHHHTCS---SCCCTTEEEESCTTCSCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGG
T ss_pred             eeeeeeCHHHhcCccc---CCCCCCEEEeCCCCCCCccCCCCCCCceEEeECCeEEEEEEEEECCCCCCCCCCeEEEEHH
Confidence            9999999999998764   3578999999876657899999999999999889999999999999999888899999999


Q ss_pred             ccHHHHHhHhC
Q psy2626         345 NYIQWIADNIS  355 (355)
Q Consensus       345 ~y~~WI~~~i~  355 (355)
                      .|++||+++|+
T Consensus       223 ~~~~WI~~~~~  233 (235)
T 2wph_S          223 RYVNWIKEKTK  233 (235)
T ss_dssp             GGHHHHHHHCC
T ss_pred             HhHHHHHHHHh
Confidence            99999999875

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=100.00  E-value=2.4e-55  Score=390.33  Aligned_cols=234  Identities=32%  Similarity=0.567  Sum_probs=200.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||.+|.+++|||||+|.+..      +...++|+||||+++||||||||+...   ....+.|++|.++.......+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~------~~~~~~CgGtLIs~~~VLTAAHC~~~~---~~~~~~v~~G~~~~~~~~~~~~   71 (241)
T 1m9u_A            1 VIGGTNASPGEFPWQLSQQRQS------GSWSHSCGASLLSSTSALSASHCVDGV---LPNNIRVIAGLWQQSDTSGTQT   71 (241)
T ss_dssp             CBTCEECCTTSSTTEEEEEEES------SSEEEEEEEEECSSSEEEECHHHHTTC---CGGGEEEEESCSBTTCCTTCEE
T ss_pred             CCCCeECCCCCcCeEEEEEecC------CceeeeeEEEEEeCCEEEecHHhCCCC---CcceEEEEEEeecCCCCCCceE
Confidence            7899999999999999997642      223589999999999999999999752   2356889999998876666789


Q ss_pred             EEEeeeEeCCCC--CCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEE
Q psy2626         188 IEIERPIIHEQY--TSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHV  265 (355)
Q Consensus       188 ~~v~~i~~hp~y--~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~  265 (355)
                      +.|+++++||+|  +.....||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|+++
T Consensus        72 ~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~L~~~  148 (241)
T 1m9u_A           72 ANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNN---NDYAGTTCVISGWGRTDGTNNLPDILQKS  148 (241)
T ss_dssp             EEEEEEEECTTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSS---CCCTTCEEEEEESSCSSSSSCCCSBCEEE
T ss_pred             EEEEEEEeCCCcCCCCCcccccEEEEEecCccccCCCccccCcCCCcC---CCCCCCEEEEEeCcccCCCCCcccceeEe
Confidence            999999999999  7777889999999999999999999999997622   12378899999999998766678899999


Q ss_pred             EEeeeChhHHHhhhhcCC-CCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEe----CCCCCCCCCCcEE
Q psy2626         266 QISVVDNPKCRQIFSNYG-ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSY----GKKCAEVGFPGVY  340 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~-~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~----g~~C~~~~~p~vy  340 (355)
                      .+++++.++|+..+.... ..+.++||||+...++.++|+|||||||++.. ++|+|+||+||    |.+|+..+.|++|
T Consensus       149 ~~~~~~~~~C~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~l~Gi~S~~~~~g~~C~~~~~p~vy  227 (241)
T 1m9u_A          149 SIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPD-GGTRVVGVTSWVVSSGLGACLPDYPSVY  227 (241)
T ss_dssp             EEEBCCHHHHHHHHTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEES-SSEEEEEEEEECCBCTTSCBCTTSCEEE
T ss_pred             eEEEEcHHHhhhhhcccCCCcccCCcEEECcCCCCCeeecCcCCccEEEeC-CCEEEEEEEEEeccCCCCccCCCCCEEE
Confidence            999999999998764321 23789999999766578999999999999976 88999999999    4669887889999


Q ss_pred             EeCcccHHHHHhHh
Q psy2626         341 TRVTNYIQWIADNI  354 (355)
Q Consensus       341 t~V~~y~~WI~~~i  354 (355)
                      |||++|++||+++|
T Consensus       228 t~V~~~~~WI~~~~  241 (241)
T 1m9u_A          228 TRVSAYLGWIGDNS  241 (241)
T ss_dssp             EEGGGTHHHHHHHC
T ss_pred             EEhHHhHhHHhhhC
Confidence            99999999999986

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=100.00  E-value=1.9e-55  Score=392.18  Aligned_cols=238  Identities=34%  Similarity=0.623  Sum_probs=202.9

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||++|..++|||||+|++...    ++...++|+||||+++||||||||+...  .......|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~----~~~~~~~CgGtLI~~~~VLTAAHC~~~~--~~~~~~~v~~g~~~~~~~~~~~~   74 (247)
T 3mhw_U            1 IIGGEFTTIENQPWFAAIYRRHR----GGSVTYVCGGSLISPCWVISATHCFIDY--PKKEDYIVYLGRSRLNSNTQGEM   74 (247)
T ss_dssp             CBSSEECCGGGSTTEEEEEEECT----TSCEEEEEEEEEEETTEEEECGGGTTTS--CCGGGEEEEESCCBSSSCCTTCE
T ss_pred             CCCCEECCCCCCCCEEEEEEecC----CCccceEEEEEEEeCCEEEEcHHhCcCC--CCCccEEEEeccccccCCCCCCE
Confidence            78999999999999999987543    3333689999999999999999999752  223468899999887654 4567


Q ss_pred             EEEEeeeEeCCCCCCCC--CCCCeEEEEeCCC----CCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCC-CC
Q psy2626         187 SIEIERPIIHEQYTSAR--KLNDIALFRLRED----APLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP-LS  259 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~--~~~DIALl~L~~~----v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~-~~  259 (355)
                      .+.|+++++||+|+...  ..||||||||++|    +.+++.++|||||....   ....+..++++|||.+..... .+
T Consensus        75 ~~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~v~pi~lp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~  151 (247)
T 3mhw_U           75 KFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYN---DPQFGTSCEITGFGKENSTDYLYP  151 (247)
T ss_dssp             EEEEEEEEECTTCEEC-CCEESCCEEEEEECTTSCCCCCBTTBCCCBCCCTTC---CCCTTCEEEEEESCCSSTTCSSCC
T ss_pred             EEEEEEEEECCCCCCCcCCCCCcEEEEEeCCccccccccCCcccccccCCCcC---CCCCCCEEEEEecCCcCCCCcccc
Confidence            89999999999998776  5599999999999    78999999999997543   345688899999999876542 57


Q ss_pred             ccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcE
Q psy2626         260 PKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV  339 (355)
Q Consensus       260 ~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~v  339 (355)
                      ..|+++.+++++.+.|+..+. ++..+.+.||||+...++.++|+|||||||++..+++|+|+||+|||..|+..+.|++
T Consensus       152 ~~l~~~~~~~~~~~~C~~~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~l~Gi~S~g~~c~~~~~p~v  230 (247)
T 3mhw_U          152 EQLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGV  230 (247)
T ss_dssp             SBCEEEEEEEECHHHHTSTTT-TGGGCCTTEEEEECTTSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEE
T ss_pred             hhheeeEEEEEChHHhcCccc-cCCcCCCCeEecCCCCCCCccCCCCCCCeEEEEECCCEEEEEEEEECCCCCCCCCCeE
Confidence            889999999999999987542 1246789999999876678999999999999999999999999999999998889999


Q ss_pred             EEeCcccHHHHHhHhC
Q psy2626         340 YTRVTNYIQWIADNIS  355 (355)
Q Consensus       340 yt~V~~y~~WI~~~i~  355 (355)
                      ||||+.|++||+++|+
T Consensus       231 yt~V~~~~~WI~~~~~  246 (247)
T 3mhw_U          231 YTRVSHFLPWIRSHTK  246 (247)
T ss_dssp             EEEGGGCHHHHHHHTT
T ss_pred             EEEHHHHHHHHHHHhc
Confidence            9999999999999885

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=100.00  E-value=2.6e-55  Score=389.71  Aligned_cols=225  Identities=30%  Similarity=0.582  Sum_probs=194.6

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||.+|.+++|||||+|.+.         ..++|+||||+++||||||||+...    ...+.|++|.+++...  .+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~---------~~~~CgGtLIs~~~VLTAAHC~~~~----~~~~~v~~G~~~~~~~--~~~   65 (240)
T 2zgc_A            1 IIGGREVIPHSRPYMASLQRN---------GSHLCGGVLVHPKWVLTAAHCLAQR----MAQLRLVLGLHTLDSP--GLT   65 (240)
T ss_dssp             CBTCEECCTTSSTTEEEEEET---------TEEEEEEEEEETTEEEECGGGGCSC----GGGEEEEESCSBSSSC--CEE
T ss_pred             CCCCEECCCCCcCcEEEEEeC---------CCeEEEEEEEcCCEEEEcHHhcCCC----CCCEEEEecccccCCC--CeE
Confidence            789999999999999999752         1489999999999999999999752    1267899999887653  478


Q ss_pred             EEEeeeEeCCCCCCCC-CCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         188 IEIERPIIHEQYTSAR-KLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~-~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      +.|+++++||+|+... ..||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|+++.
T Consensus        66 ~~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~  142 (240)
T 2zgc_A           66 FHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQ---VVAAGTRCSMAGWGLTHQGGRLSRVLRELD  142 (240)
T ss_dssp             EEEEEEEECTTCBCTTSCBSCCEEEEESSCCCCCSSCCCCCCCCTTC---CCCTTCEEEEEECCBSSTTCCBCSBCEEEE
T ss_pred             EEEEEEEECCCCCCCCCCcccEEEEEeCCcccCCCceeeeEcCCCCC---CCCCCCEEEEEECCcccCCCCcCceeeeee
Confidence            9999999999999876 789999999999999999999999997653   345788999999999876666788999999


Q ss_pred             EeeeChhHHHh--hhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeC-CCCCCCCCCcEEEeC
Q psy2626         267 ISVVDNPKCRQ--IFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRV  343 (355)
Q Consensus       267 ~~~~~~~~C~~--~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g-~~C~~~~~p~vyt~V  343 (355)
                      +++++.+.|+.  .+.   ..+.+.||||+...++.++|+|||||||++.  +.|+|+||+||| ..|+..+.|+|||||
T Consensus       143 ~~~~~~~~C~~~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~--~~~~l~Gi~S~g~~~C~~~~~p~vyt~V  217 (240)
T 2zgc_A          143 LQVLDTRMCNNSRFWN---GSLSPSMVCLAADSKDQAPCKGDSGGPLVCG--KGRVLAGVLSFSSRVCTDIFKPPVATAV  217 (240)
T ss_dssp             EEECCHHHHTSTTTTT---TCCCTTEEEEECSSTTCBCCTTCTTCEEEET--TTTEEEEEECCCCSSTTCTTSCCEEEES
T ss_pred             eeecCHHHhCCccccC---CCCCCceEeeccCCCCCccCCCCccCeeEEC--CCCEEEEEEEECCCCCCCCCCCcEEEEH
Confidence            99999999987  443   3578899999876657899999999999985  348999999999 569887889999999


Q ss_pred             cccHHHHHhHhC
Q psy2626         344 TNYIQWIADNIS  355 (355)
Q Consensus       344 ~~y~~WI~~~i~  355 (355)
                      +.|++||+++|+
T Consensus       218 ~~y~~WI~~~~~  229 (240)
T 2zgc_A          218 APYVSWIRKVTG  229 (240)
T ss_dssp             GGGHHHHHHHHC
T ss_pred             HHhHHHHHHHHh
Confidence            999999999874

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=100.00  E-value=8e-55  Score=388.60  Aligned_cols=232  Identities=36%  Similarity=0.660  Sum_probs=199.7

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|..++|||||+|++.          .++|+||||+++||||||||+...  .....+.|++|.++.... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~----------~~~CgGsLIs~~~VLTAAHC~~~~--~~~~~~~V~~G~~~~~~~~~~~~   68 (248)
T 2r0l_A            1 IIGGSSSLPGSHPWLAAIYIG----------DSFCAGSLVHTCWVVSAAHCFSHS--PPRDSVSVVLGQHFFNRTTDVTQ   68 (248)
T ss_dssp             CBSCEECCTTSSTTEEEEEET----------TEEEEEEEEETTEEEECGGGGTTC--CCGGGEEEEESCCBTTCCCSSCE
T ss_pred             CCCCccCCCCCCCeEEEEEcC----------CceEEEEEEcCCEEEECHHHcCCC--CCcCcEEEEEEeEEcCCCCCccE
Confidence            789999999999999999642          378999999999999999999752  223568899999887654 3468


Q ss_pred             EEEEeeeEeCCCCCC-CCCCCCeEEEEeCCC----CCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCC-CCc
Q psy2626         187 SIEIERPIIHEQYTS-ARKLNDIALFRLRED----APLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP-LSP  260 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~-~~~~~DIALl~L~~~----v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~-~~~  260 (355)
                      .+.|+++++||+|+. ....||||||||++|    +.|+++++|||||....   ....+..++++|||.+..... .+.
T Consensus        69 ~~~v~~i~~hp~y~~~~~~~~DiALl~L~~~~~~~~~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~  145 (248)
T 2r0l_A           69 TFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGS---TFPAGHKCQIAGWGHLDENVSGYSS  145 (248)
T ss_dssp             EECEEEEEECTTCCTTSTTTTCCEEEEECCSSSCSSCCBTTBCCCBCCCTTC---CCCTTCEEEEEESCCSSSSCCSCCS
T ss_pred             EEeeeEEEeCCccCcCCCCCCCEEEEEeCCcccccccCCCcEEEEECCCCCC---CCCCCCEEEEEEccccCCCCCCCCc
Confidence            899999999999988 677899999999999    89999999999997543   345788999999999875543 478


Q ss_pred             cceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEE
Q psy2626         261 KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVY  340 (355)
Q Consensus       261 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vy  340 (355)
                      .|+++.+++++.+.|+..+. ++..+.+.||||+...++.++|+|||||||++..+++|+|+||+|||..|+..+.|++|
T Consensus       146 ~L~~~~~~~~~~~~C~~~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vy  224 (248)
T 2r0l_A          146 SLREALVPLVADHKCSSPEV-YGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVY  224 (248)
T ss_dssp             BCEEEEEEBCCHHHHTSTTT-TGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSTTTCTTCCEEE
T ss_pred             hheEEEEeeeCHHHhCCccc-cCCcCCCCEEeECCCCCCCcCCCCccCCeEEEEECCcEEEEEEEEeCCCCCCCCCCcEE
Confidence            89999999999999987532 22357899999987665789999999999999989999999999999999987889999


Q ss_pred             EeCcccHHHHHhHhC
Q psy2626         341 TRVTNYIQWIADNIS  355 (355)
Q Consensus       341 t~V~~y~~WI~~~i~  355 (355)
                      |||+.|++||+++|+
T Consensus       225 t~V~~~~~WI~~~~~  239 (248)
T 2r0l_A          225 TRVANYVDWINDRIR  239 (248)
T ss_dssp             EEGGGGHHHHHHHHC
T ss_pred             EEHHHHHHHHHHHhc
Confidence            999999999999884

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=100.00  E-value=5.4e-55  Score=387.81  Aligned_cols=230  Identities=33%  Similarity=0.560  Sum_probs=196.6

Q ss_pred             CceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CC
Q psy2626         106 KRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SS  184 (355)
Q Consensus       106 ~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~  184 (355)
                      .||+||.+|.+++|||||+|.+..         .++|+||||+++||||||||+...  .......|++|.+++... ..
T Consensus         1 ~rIvgG~~a~~~~~Pw~v~l~~~~---------~~~CgGtLIs~~~VLTAAHC~~~~--~~~~~~~v~~G~~~~~~~~~~   69 (240)
T 1mza_A            1 MEIIGGKEVSPHSRPFMASIQYGG---------HHVCGGVLIDPQWVLTAAHCQYRF--TKGQSPTVVLGAHSLSKNEAS   69 (240)
T ss_dssp             CCCCCCEECCTTSSTTEEEEEETT---------EEEEEEEEEETTEEEECGGGSCTT--CSCSCEEEEESCSBSSSCCTT
T ss_pred             CceECCEECCCCCCCeEEEEeeCC---------ceEEEEEEecCCEEEECHHhCCCC--CCCCCeEEEeCceecCCCCCc
Confidence            389999999999999999997531         589999999999999999998642  123467899999987654 34


Q ss_pred             cEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCC-CCccce
Q psy2626         185 GVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP-LSPKLR  263 (355)
Q Consensus       185 ~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~-~~~~l~  263 (355)
                      .+.+.|+++++||+|+.....||||||||++|+.|+++++|||||...    ....+..++++|||.+...+. .+..|+
T Consensus        70 ~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~----~~~~~~~~~v~GwG~~~~~~~~~~~~L~  145 (240)
T 1mza_A           70 KQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKT----SLRSGTKCKVTGWGATDPDSLRPSDTLR  145 (240)
T ss_dssp             CEEEEEEEEEECCCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSC----CCCTTCEEEEEECCCSSTTCSSCCSBCE
T ss_pred             eEEEEEEEEEeCCCccCCCCCceEEEEEeCCCcccCCceeeeecCCcc----cCCCCCEEEEEeCCcCCCCCCCccccce
Confidence            688999999999999988888999999999999999999999999743    235788999999999876554 578899


Q ss_pred             EEEEeeeChhHHH--hhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEE
Q psy2626         264 HVQISVVDNPKCR--QIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT  341 (355)
Q Consensus       264 ~~~~~~~~~~~C~--~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt  341 (355)
                      ++.+++++.+.|+  ..+.. ...+.+.||||+...++.++|+|||||||++.  +  +|+||+|||..|+..+.|++||
T Consensus       146 ~~~~~i~~~~~C~~~~~~~~-~~~~~~~~~Ca~~~~~~~~~C~GDSGGPL~~~--~--~l~Gi~S~g~~C~~~~~p~vyt  220 (240)
T 1mza_A          146 EVTVTVLSRKLCNSQSYYNG-DPFITKDMVCAGDAKGQKDSCKGDAGGPLICK--G--VFHAIVSGGHECGVATKPGIYT  220 (240)
T ss_dssp             EEEEEECCHHHHTSTTTTTT-TTCCCTTEEEEECTTSCCCCCTTCTTCEEEET--T--EEEEEECSSCCSSCTTCCEEEE
T ss_pred             EeEEEEeCHHHcCCcceeCC-CCcCCCCeEeecCCCCCCccCCCCCCCeeEEC--C--EEEEEEEECCCCCCCCCCcEEE
Confidence            9999999999998  44432 12578899999876557899999999999984  2  7999999999999888999999


Q ss_pred             eCcc-cHHHHHhHhC
Q psy2626         342 RVTN-YIQWIADNIS  355 (355)
Q Consensus       342 ~V~~-y~~WI~~~i~  355 (355)
                      ||+. |++||+++|+
T Consensus       221 ~v~~~y~~WI~~~~~  235 (240)
T 1mza_A          221 LLTKKYQTWIKSNLV  235 (240)
T ss_dssp             ECCHHHHHHHHHHTC
T ss_pred             eChHHHHHHHHHhcc
Confidence            9999 9999999884

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=100.00  E-value=9.9e-55  Score=382.91  Aligned_cols=224  Identities=32%  Similarity=0.517  Sum_probs=193.0

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|.+...     + ..++|+||||+++||||||||+..       ...|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-----~-~~~~CgGtLI~~~~VLTAAHC~~~-------~~~v~~G~~~~~~~~~~~~   67 (227)
T 1iau_A            1 IIGGHEAKPHSRPYMAYLMIWDQ-----K-SLKRCGGFLIRDDFVLTAAHCWGS-------SINVTLGAHNIKEQEPTQQ   67 (227)
T ss_dssp             CBTCEECCTTSSTTEEEEEEECS-----S-CEEEEEEEEEETTEEEECGGGCCS-------EEEEEESCSBTTSCCTTCE
T ss_pred             CCCCeECCCCCcCcEEEEEEECC-----C-CceEEEEEEEcCCEEEECHHhCCC-------ceEEEEccccccCCCCccE
Confidence            78999999999999999976432     1 158999999999999999999963       47899999987654 4568


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|+++.
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~---~~~~g~~~~v~GwG~~~~~~~~~~~L~~~~  144 (227)
T 1iau_A           68 FIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKA---QVKPGQTCSVAGWGQTAPLGKHSHTLQEVK  144 (227)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCCCCCTTC---CCCTTCEEEEEESSCSSSSSCCCSBCEEEE
T ss_pred             EEEEEEEECCCCCCCCCCCCCeEEEEECCcccCCCceecccCCCCCC---CCCCCCEEEEEEcccCCCCCCcCceeeEee
Confidence            89999999999999988899999999999999999999999997653   345788999999999876666788999999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.+.|+..+..  ....+.||||+....+.++|+|||||||++..    +|+||+|||  |+..+.|++||||+.|
T Consensus       145 ~~i~~~~~C~~~~~~--~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g--c~~~~~p~vyt~v~~~  216 (227)
T 1iau_A          145 MTVQEDRKCESDLRH--YYDSTIELCVGDPEIKKTSFKGDSGGPLVCNK----VAQGIVSYG--RNNGMPPRACTKVSSF  216 (227)
T ss_dssp             EEBCCHHHHHHHTTT--TCCTTTEEEESCTTSCCBCCTTCTTSEEEETT----EEEEEEEEE--CTTSCSCEEEEEGGGG
T ss_pred             eeeechHHhhhHhcc--ccCCCcEEEeECCCCCCeeeecCCCchheEee----EEEEEEeEe--cCCCCCCeEEEEHHHH
Confidence            999999999987753  13345599999866678999999999999942    799999999  8766789999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       217 ~~WI~~~~~  225 (227)
T 1iau_A          217 VHWIKKTMK  225 (227)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999874

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=100.00  E-value=9.3e-55  Score=382.00  Aligned_cols=219  Identities=33%  Similarity=0.656  Sum_probs=191.7

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccC--CCCc
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLED--TSSG  185 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~--~~~~  185 (355)
                      |+||.+|.+++|||||+|.+.         ..++|+||||+++||||||||+..       ...|++|.++...  ....
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~---------~~~~CgGsLIs~~~VLTAAHC~~~-------~~~v~~g~~~~~~~~~~~~   64 (223)
T 2bdg_A            1 IINGEDCSPHSQPWQAALVME---------NELFCSGVLVHPQWVLSAAHCFQN-------SYTIGLGLHSLEADQEPGS   64 (223)
T ss_dssp             CBTCEECCTTSSTTEEEEECS---------SCEEEEEEEEETTEEEECGGGCCS-------SEEEEESCSBSCGGGCTTC
T ss_pred             CCCCEECCCCCCCcEEEEeeC---------CCEEEEEEEecCCEEEEhHHhCCC-------CeEEEEeeeecCCCCCCCc
Confidence            689999999999999999753         248999999999999999999953       4679999887653  3456


Q ss_pred             EEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEE
Q psy2626         186 VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHV  265 (355)
Q Consensus       186 ~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~  265 (355)
                      +.+.|+++++||+|+.....||||||||++|+.|+++++|||||...     ...+..++++|||.+..+ ..+..|+++
T Consensus        65 ~~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~-----~~~~~~~~v~GwG~~~~~-~~~~~L~~~  138 (223)
T 2bdg_A           65 QMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQC-----PTAGNSCLVSGWGLLANG-RMPTVLQCV  138 (223)
T ss_dssp             EEEEEEEEEECTTTTSSTTCSCCEEEEESSCCCCCSSCCCCCBCSSC-----CCTTCEEEEEESCCCTTS-CCCSBCEEE
T ss_pred             EEEEEEEEEeCCCCCCCCCcCcEEEEEECCcccCCCceecccCCCCC-----CCCCCEEEEEeCcccCCC-CCCCcceEE
Confidence            78899999999999998889999999999999999999999999653     356788999999998755 467889999


Q ss_pred             EEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC-CCCCCCCCcEEEeCc
Q psy2626         266 QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVT  344 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~-~C~~~~~p~vyt~V~  344 (355)
                      .+++++.+.|+..+..   .+.+.||||+....+.++|+|||||||++..    +|+||+|||. .|+..+.|+|||||+
T Consensus       139 ~~~~~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~  211 (223)
T 2bdg_A          139 NVSVVSEEVCSKLYDP---LYHPSMFCAGGGQDQKDSCNGDSGGPLICNG----YLQGLVSFGKAPCGQVGVPGVYTNLC  211 (223)
T ss_dssp             EEEBCCHHHHHHHSTT---TCCTTEEEECCSTTCCBCCTTCTTCEEEETT----EEEEEEEECCSSTTCTTCCEEEECGG
T ss_pred             EEEEeCHHHhhhhhCC---CCCCCeEeccCCCCCCCcCCCCCCchheEcc----EEEEEEEecCCCCCCCCCCcEEEEHH
Confidence            9999999999987753   5789999998755578999999999999853    7999999997 599888999999999


Q ss_pred             ccHHHHHhHhC
Q psy2626         345 NYIQWIADNIS  355 (355)
Q Consensus       345 ~y~~WI~~~i~  355 (355)
                      .|++||+++|+
T Consensus       212 ~~~~WI~~~i~  222 (223)
T 2bdg_A          212 KFTEWIEKTVQ  222 (223)
T ss_dssp             GTHHHHHHHHH
T ss_pred             HhHHHHHHHhc
Confidence            99999999874

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=6.1e-55  Score=384.47  Aligned_cols=223  Identities=36%  Similarity=0.688  Sum_probs=193.9

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|.+..        ..++|+||||+++||||||||+..  .   ..+.|++|.++.... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~--------~~~~CgGtLI~~~~VLTAAHC~~~--~---~~~~V~~G~~~~~~~~~~~~   67 (228)
T 1fxy_A            1 IVGGYNCKDGEVPWQALLINEE--------NEGFCGGTILSEFYILTAAHCLYQ--A---KRFKVRVGDRNTEQEEGGEA   67 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEECTT--------SCEEEEEEECSSSEEEECGGGTTS--C---SSCEEEEECSCTTTCCCCEE
T ss_pred             CCCCEECCCCCcCcEEEEEcCC--------CCeeEEEEEeeCCEEEECHHHCCC--C---CcEEEEECccCccccCCCcE
Confidence            7899999999999999996431        247899999999999999999953  1   457899999887654 3457


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCC-CCccceEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGP-LSPKLRHV  265 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~-~~~~l~~~  265 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||...     ...+..++++|||.+...+. .+..|+++
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~-----~~~~~~~~v~GwG~~~~~~~~~~~~l~~~  142 (228)
T 1fxy_A           68 VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAP-----PATGTKCLISGWGNTASSGADYPDELQCL  142 (228)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCSSC-----CCTTCEEEEEESSCCCSSSCCCCSSCEEE
T ss_pred             EEEEEEEEECCCCCCCCCcCcEEEEEECCcccCCCceeccCCCCCC-----CCCCCEEEEEecCccCCCCCCCCccceEE
Confidence            8899999999999998889999999999999999999999999654     24678899999999876554 57889999


Q ss_pred             EEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcc
Q psy2626         266 QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN  345 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~  345 (355)
                      .+++++.+.|+..+..   .+.+.||||+...++.++|+|||||||++..    +|+||+|||..|+..+.|++||||+.
T Consensus       143 ~~~~~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~C~~~~~p~vyt~V~~  215 (228)
T 1fxy_A          143 DAPVLSQAKCEASYPG---KITSNMFCVGFLEGGKDSCQGDSGGPVVCNG----QLQGVVSWGDGCAQKNKPGVYTKVYN  215 (228)
T ss_dssp             EEEBCCHHHHHHHSTT---TCCTTEEEESCTTCSCBCCTTCTTCEEEETT----EEEEEEEECSSSSBTTBCEEEEEGGG
T ss_pred             EEEEeCHHHhHhhcCC---CCCCCEEEeccCCCCCccccCccccceEECC----EEEEEEEECCCCCCCCCCEEEEEhHH
Confidence            9999999999988753   5788999998766678999999999999853    79999999999998788999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++|+
T Consensus       216 y~~WI~~~~~  225 (228)
T 1fxy_A          216 YVKWIKNTIA  225 (228)
T ss_dssp             GHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999873

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=100.00  E-value=1e-54  Score=384.51  Aligned_cols=225  Identities=32%  Similarity=0.606  Sum_probs=193.3

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||++|.+++|||||+|.+..         .++|+||||+++||||||||+..      ....|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---------~~~CgGtLIs~~~VLTAAHC~~~------~~~~v~~G~~~~~~~~~~~~   65 (234)
T 1orf_A            1 IIGGNEVTPHSRPYMVLLSLDR---------KTICAGALIAKDWVLTAAHCNLN------KRSQVILGAHSITREEPTKQ   65 (234)
T ss_dssp             CBSCEECCTTSSTTEEEEECSS---------SCEEEEEEEETTEEEECTTCCCC------TTCEEEESCSBSSSCCTTCE
T ss_pred             CCCCEECCCCCCCeEEEEccCC---------ceEEEEEEeeCCEEEEchhcCCC------CCceEEEeccccCcCCCceE
Confidence            7899999999999999997531         47899999999999999999864      346799999887654 3468


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|+++.
T Consensus        66 ~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~  142 (234)
T 1orf_A           66 IMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGD---DVKPGTMCQVAGWGRTHNSASWSDTLREVE  142 (234)
T ss_dssp             EECEEEEEECTTCCTTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCC---CCCTTCEEEEEESSCSSSSSCCCSBCEEEE
T ss_pred             EEEEEEEEcCCCCCCCCCCCCEEEEEECCcCccCCCeeeeecCCCcC---CCCCCCEEEEEECCcCCCCCCccccceEeE
Confidence            89999999999999988899999999999999999999999997653   345778899999999876665778899999


Q ss_pred             EeeeChhHHHh--hhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC--CCCCCCCCcEEEe
Q psy2626         267 ISVVDNPKCRQ--IFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--KCAEVGFPGVYTR  342 (355)
Q Consensus       267 ~~~~~~~~C~~--~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~--~C~~~~~p~vyt~  342 (355)
                      +++++.++|+.  .+. ....+.++||||+...++.++|+|||||||++.  +  +|+||+|||.  .|+..+.|++|||
T Consensus       143 ~~~~~~~~C~~~~~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~--~--~l~GI~S~g~~~~C~~~~~p~vyt~  217 (234)
T 1orf_A          143 ITIIDRKVCNDRNHYN-FNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE--G--VFRGVTSFGLENKCGDPRGPGVYIL  217 (234)
T ss_dssp             EEEECHHHHTSTTTTT-TTTCCCTTEEEEECSSCCCBCCTTCTTCEEEET--T--EEEEEEEECCTTCTTCTTSCEEEEE
T ss_pred             EEeeCHHHcCCccccc-cCCccCCCEEEecCCCCCCcCCCCCCCCeEEEC--C--EEEEEEEEcCCCCCCCCCCCCEEEE
Confidence            99999999983  332 222345599999976557899999999999984  2  7999999998  7998788999999


Q ss_pred             Cc-ccHHHHHhHhC
Q psy2626         343 VT-NYIQWIADNIS  355 (355)
Q Consensus       343 V~-~y~~WI~~~i~  355 (355)
                      |+ +|++||+++|+
T Consensus       218 v~~~~~~WI~~~~~  231 (234)
T 1orf_A          218 LSKKHLNWIIMTIK  231 (234)
T ss_dssp             CCHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHH
Confidence            99 99999999885

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=100.00  E-value=9.7e-55  Score=385.20  Aligned_cols=231  Identities=33%  Similarity=0.661  Sum_probs=198.4

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|.+..     ++...++|+||||+++||||||||+...     ....|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~-----~~~~~~~CgGtLIs~~~VLTAAHC~~~~-----~~~~V~~G~~~~~~~~~~~~   70 (236)
T 1elt_A            1 VVGGRVAQPNSWPWQISLQYKS-----GSSYYHTCGGSLIRQGWVMTAAHCVDSA-----RTWRVVLGEHNLNTNEGKEQ   70 (236)
T ss_dssp             CBSSEECCTTSSTTEEEEEEEE-----TTEEEEEEEEEEEETTEEEECHHHHSSC-----CCEEEEESCSBTTSCCSCCE
T ss_pred             CCCCEECCCCCCCCEEEEEEec-----CCceeeEEEEEEEeCCEEEECHHhhCCc-----CceEEEEccccCCCCCCCcE
Confidence            6899999999999999998743     2222478999999999999999999651     457899999987654 3467


Q ss_pred             EEEEeeeEeCCCCCCCCC--CCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceE
Q psy2626         187 SIEIERPIIHEQYTSARK--LNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRH  264 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~--~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~  264 (355)
                      .+.|+++++||+|+....  .||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|++
T Consensus        71 ~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~l~~  147 (236)
T 1elt_A           71 IMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQ---ILPNNNPCYITGWGKTSTGGPLSDSLKQ  147 (236)
T ss_dssp             EECEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTC---CCCTTCCEEEEESCCSSTTCCCCSBCEE
T ss_pred             EEEEEEEEECCCCCCCCCCCCccEEEEECCCCCccCCcEEeccCCCccc---cCCCCCEEEEEeCCCcCCCCCcChhheE
Confidence            899999999999998776  79999999999999999999999997653   2456788999999998766667889999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC--CCCCCCCCcEEEe
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--KCAEVGFPGVYTR  342 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~--~C~~~~~p~vyt~  342 (355)
                      +.+++++.+.|+..+. ++..+.+.||||+. . +.++|.|||||||++..+++|+|+||+|||.  +|+..+.|++|||
T Consensus       148 ~~~~~~~~~~C~~~~~-~~~~~~~~~~Ca~~-~-~~~~C~GDSGgPL~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~  224 (236)
T 1elt_A          148 AWLPSVDHATCSSSGW-WGSTVKTTMVCAGG-G-ANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTR  224 (236)
T ss_dssp             EECCEECHHHHTSTTT-TGGGSCTTEEEECC-S-SCBCCTTCTTCEEEEEETTEEEEEEEEEECCSSCTTCTTCCEEEEE
T ss_pred             eEeeecCHHHhccccc-cCCcCCcceEEecC-C-CCccCCCCCCCeeEEEECCEEEEEEEEEEeCCCCCCCCCCCeEEEE
Confidence            9999999999987632 12357899999984 3 4899999999999999889999999999995  6988788999999


Q ss_pred             CcccHHHHHhHh
Q psy2626         343 VTNYIQWIADNI  354 (355)
Q Consensus       343 V~~y~~WI~~~i  354 (355)
                      |+.|++||+++|
T Consensus       225 V~~~~~WI~~~i  236 (236)
T 1elt_A          225 VSAYISWMNGIM  236 (236)
T ss_dssp             GGGGHHHHHHHC
T ss_pred             HHHhHHHHHhhC
Confidence            999999999986

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=100.00  E-value=1.7e-54  Score=380.35  Aligned_cols=219  Identities=38%  Similarity=0.685  Sum_probs=192.2

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|..++|||||+|+..         ..++|+||||+++||||||||+..       ...|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~---------~~~~CgGtLIs~~~VLTAAHC~~~-------~~~v~~G~~~~~~~~~~~~   64 (223)
T 1lo6_A            1 LVHGGPCDKTSHPYQAALYTS---------GHLLCGGVLIHPLWVLTAAHCKKP-------NLQVFLGKHNLRQRESSQE   64 (223)
T ss_dssp             CBSCEECCTTSCTTEEEEEET---------TEEEEEEEEEETTEEEECGGGCCT-------TCEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCCEEEEecC---------CCEEEEeEEecCCEEEECccCCCC-------CeEEEEcceecCCCCCCcE
Confidence            689999999999999999642         148999999999999999999852       46799999887643 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....     ..+..++++|||.+. .+..+..|+++.
T Consensus        65 ~~~v~~i~~Hp~y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~-----~~~~~~~v~GwG~~~-~~~~~~~l~~~~  138 (223)
T 1lo6_A           65 QSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCS-----ANTTSCHILGWGKTA-DGDFPDTIQCAY  138 (223)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCCBCCCTT-----CCCCEEEEEESSCCT-TSSCCSBCEEEE
T ss_pred             EEEEEEEEECCCCCCCCCcCeEEEEEECCcccCCCceeecccCCCCC-----CCCCEEEEEEECCCC-CCCcCceeeEEE
Confidence            88999999999999988899999999999999999999999997642     467889999999987 445778899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeC-CCCCCCCCCcEEEeCcc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTN  345 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g-~~C~~~~~p~vyt~V~~  345 (355)
                      +++++.++|+..+..   .+.++||||+....+.++|+|||||||++..    +|+||+||| ..|+..+.|++||||+.
T Consensus       139 ~~~~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~  211 (223)
T 1lo6_A          139 IHLVSREECEHAYPG---QITQNMLCAGDEKYGKDSCQGDSGGPLVCGD----HLRGLVSWGNIPCGSKEKPGVYTNVCR  211 (223)
T ss_dssp             EEEECHHHHHHHSTT---TCCTTEEEEECTTTCCBCCTTTTTCEEEETT----EEEEEEEECCSSCCCSSSCEEEEEGGG
T ss_pred             EEEeCHHHhhhhhCC---CCCCCeEEeecCCCCCeeccccCCCcEEeCC----EEEEEEeeCCCCCCCCCCCcEEEEHHH
Confidence            999999999987753   5789999999766578999999999999842    699999999 57998788999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++|+
T Consensus       212 ~~~WI~~~i~  221 (223)
T 1lo6_A          212 YTNWIQKTIQ  221 (223)
T ss_dssp             GHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999999985

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=100.00  E-value=1.2e-54  Score=382.31  Aligned_cols=220  Identities=30%  Similarity=0.602  Sum_probs=191.6

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC--CCc
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT--SSG  185 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~--~~~  185 (355)
                      |+||.+|.+++|||||+|.+..        ..++|+||||+++||||||||+..       ...|++|.+++...  ...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~--------~~~~CgGtLIs~~~VLTAAHC~~~-------~~~v~~G~~~~~~~~~~~~   65 (227)
T 2psx_A            1 IINGSDCDMHTQPWQAALLLRP--------NQLYCGAVLVHPQWLLTAAHCRKK-------VFRVRLGHYSLSPVYESGQ   65 (227)
T ss_dssp             CBTCEECCTTSCTTEEEEEETT--------TEEEEEEEEEETTEEEECGGGCCS-------SCEEEESCCBSSCCCCTTC
T ss_pred             CCCCEECCCCCCCCEEEEEecC--------CCceEEEEEEcCCEEEEhHHcCCC-------CcEEEEeeeecccCCCCCc
Confidence            7899999999999999997642        258999999999999999999863       46799999887643  456


Q ss_pred             EEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC-CCCccceE
Q psy2626         186 VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRH  264 (355)
Q Consensus       186 ~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~  264 (355)
                      +.+.|.++++||+|+.....||||||||++|+.|+++++|||||...     ...+..++++|||.+.... ..+..|++
T Consensus        66 ~~~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~~L~~  140 (227)
T 2psx_A           66 QMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHC-----PSAGTKCLVSGWGTTKSPQVHFPKVLQC  140 (227)
T ss_dssp             EEEEEEEEEECTTCCSSSCTTCCEEEEESSCCCCCSSSCCCCBCSSC-----CCTTCEEEEEESSCSSSSSCCCCSBCEE
T ss_pred             EEEEEEEEEeCCCCCCCCCCCCEEEEEeCCCCCCCCceeeeECCCCC-----CCCCCEEEEEeCcccCCCCCCCCchheE
Confidence            78999999999999988888999999999999999999999998542     3567889999999987654 45788999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeC-CCCCCCCCCcEEEeC
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRV  343 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g-~~C~~~~~p~vyt~V  343 (355)
                      +.+++++.++|+..+..   .+.+.||||+.. .+.++|+|||||||++..    +|+||+||| ..|+..+.|++||||
T Consensus       141 ~~~~i~~~~~C~~~~~~---~~~~~~~Ca~~~-~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V  212 (227)
T 2psx_A          141 LNISVLSQKRCEDAYPR---QIDDTMFCAGDK-AGRDSCQGDSGGPVVCNG----SLQGLVSWGDYPCARPNRPGVYTNL  212 (227)
T ss_dssp             EEEEBCCHHHHHHHSTT---TCCTTEEEECCS-TTCBCCTTCTTCEEEETT----EEEEEEEECCSSTTCTTCCEEEEEG
T ss_pred             EEEEecCHhHhhhhcCC---CCCCCEEcccCC-CCCccCCCCCCcceeeCC----EEEEEEeecCCCCCCCCCCcEEEEH
Confidence            99999999999988753   578999999863 478999999999999853    799999999 579988889999999


Q ss_pred             cccHHHHHhHhC
Q psy2626         344 TNYIQWIADNIS  355 (355)
Q Consensus       344 ~~y~~WI~~~i~  355 (355)
                      +.|++||+++|+
T Consensus       213 ~~~~~WI~~~~~  224 (227)
T 2psx_A          213 CKFTKWIQETIQ  224 (227)
T ss_dssp             GGCHHHHHHHHH
T ss_pred             HHhHHHHHHHHh
Confidence            999999999873

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=2.5e-54  Score=380.35  Aligned_cols=223  Identities=35%  Similarity=0.614  Sum_probs=192.7

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|.+...      ...++|+||||+++||||||||+..       ...|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~------~~~~~CgGsLI~~~~VLTAAHC~~~-------~~~v~~G~~~~~~~~~~~~   67 (227)
T 1euf_A            1 IIGGHEAKPHSRPYMAFLLFKTS------GKSHICGGFLVREDFVLTAAHCLGS-------SINVTLGAHNIMERERTQQ   67 (227)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESS------SSEEEEEEEEEETTEEEECGGGCCE-------EEEEEESCSBTTSCCTTCE
T ss_pred             CCCCeECCCCCcCCEEEEEEeCC------CCceEEEEEEeeCCEEEECHHHCCC-------CcEEEEcccccCCCCCccE
Confidence            78999999999999999976532      1258999999999999999999853       47799999887653 3568


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+......+..|+++.
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~  144 (227)
T 1euf_A           68 VIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLA---EVKPGMMCSVAGWGRLGVNMPSTDKLQEVD  144 (227)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTC---CCCTTCEEEEEESCBSSTTCCBCSBCEEEE
T ss_pred             EEEEEEEEeCCCCCCCCCcCceEEEEECCcCcCCCceeccCCCCccc---cCCCCCEEEEEEEccCCCCCCCchhheEeE
Confidence            89999999999999988899999999999999999999999997643   345788999999999876665678899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.+.|+..+..   .+.++||||+...+....|+|||||||++..    +|+||+|||  |+..+.|+|||||+.|
T Consensus       145 ~~i~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~~~GDsGgPL~~~~----~l~Gi~S~g--c~~~~~p~vyt~V~~y  215 (227)
T 1euf_A          145 LEVQSEEKCIARFKN---YIPFTQICAGDPSKRKNSFSGDSGGPLVCNG----VAQGIVSYG--RNDGTTPDVYTRISSF  215 (227)
T ss_dssp             EEBCCTHHHHTTCTT---CCTTTEEEESCTTSCCBCCTTCTTCEEEETT----EEEEEEEEC--CTTCCSCEEEEEGGGT
T ss_pred             eccccHHHhhHhhcC---cCCCcEEEccCCCCCCcccccCCCCceEECC----EEEEEEEEe--CCCCCCCeEEEEHHHh
Confidence            999999999987653   5788999998765436678999999999842    799999999  8776789999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       216 ~~WI~~~~~  224 (227)
T 1euf_A          216 LSWIHSTMR  224 (227)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            999999985

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=100.00  E-value=1.7e-54  Score=379.99  Aligned_cols=219  Identities=35%  Similarity=0.637  Sum_probs=192.5

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|..++|||||+|..          ..++|+||||+++||||||||+..       ...|++|.++.... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~----------~~~~CgGsLIs~~~VLTAAHC~~~-------~~~v~~G~~~~~~~~~~~~   63 (222)
T 1hj8_A            1 IVGGYECKAYSQPHQVSLNS----------GYHFCGGSLVNENWVVSAAHCYKS-------RVEVRLGEHNIKVTEGSEQ   63 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEES----------SSEEEEEEEEETTEEEECGGGCCS-------SCEEEESCSBTTSCCSCCE
T ss_pred             CCCCEECCCCCCCEEEEEEc----------CCcEEEeEEecCCEEEECHHhcCC-------CeEEEEcccccccCCCCcE
Confidence            68999999999999999942          147899999999999999999852       46799999887643 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||...     ...+..++++|||.+...+..+..|+++.
T Consensus        64 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~L~~~~  138 (222)
T 1hj8_A           64 FISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSC-----APAGTMCTVSGWGNTMSSTADSNKLQCLN  138 (222)
T ss_dssp             EEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCSSSCCCCBCCSSC-----CCTTCEEEEEESSCCCCSSCCTTBCEEEE
T ss_pred             EEEEEEEEECCCCCCCCCCCcEEEEEECCcccCCCceeccCCCCCC-----CCCCCEEEEEECCCCCCCCCCCceeEEEE
Confidence            8899999999999988888999999999999999999999999653     34678899999999876666788999999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.++|+..+..   .+.+.||||+...++.++|.|||||||++.  +  +|+||+|||..|+..+.|++||||+.|
T Consensus       139 ~~~~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~--~--~l~Gi~S~g~~C~~~~~p~vyt~v~~~  211 (222)
T 1hj8_A          139 IPILSYSDCNNSYPG---MITNAMFCAGYLEGGKDSCQGDSGGPVVCN--G--ELQGVVSWGYGCAEPGNPGVYAKVCIF  211 (222)
T ss_dssp             EEBCCHHHHHHHSTT---CCCTTEEEESCTTSSCBCCTTCTTCEEEET--T--EEEEEEEECSSSSCTTCCEEEEEGGGG
T ss_pred             EEEcCHHHhhhhccC---CCCCCeEEeccCCCCCccCCCCcccceEEC--C--EEEEEEeecCCCCCCCcCcEEEEhHHh
Confidence            999999999988753   578999999876657899999999999984  2  699999999999987889999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       212 ~~WI~~~~~  220 (222)
T 1hj8_A          212 NDWLTSTMA  220 (222)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999873

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=100.00  E-value=1.8e-54  Score=412.73  Aligned_cols=245  Identities=36%  Similarity=0.616  Sum_probs=205.7

Q ss_pred             CCCCCCcCCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEec
Q psy2626          96 ECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVG  175 (355)
Q Consensus        96 ~CG~~~~~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G  175 (355)
                      .||........||+||.+|.+++|||||+|.+           .++|+||||+++||||||||+.... .....+.|++|
T Consensus       150 ~CG~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~-----------~~~CgGsLIs~~~VLTAAHC~~~~~-~~~~~~~V~~G  217 (403)
T 1zjk_A          150 VCGLSARTTGGQIYGGQKAKPGDFPWQVLILG-----------GTTAAGALLYDNWVLTAAHAVYEQK-HDASALDIRMG  217 (403)
T ss_dssp             CCCCCSSCCSCCCSSCEECCTTSSTTEEEEEE-----------SCCEEEEEETTTEEEECHHHHGGGT-TCSTTEEEEES
T ss_pred             CCCCCCCCCCccccCCcCCCCCCcCCEeEecc-----------CCceEEEEecCCEEEEcHHhCCCCC-CCcceEEEEcc
Confidence            79987543457999999999999999999964           2579999999999999999997521 12356889999


Q ss_pred             cccccCCCCcEEEEEeeeEeCCCCCCC-CCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCC
Q psy2626         176 SIDLEDTSSGVSIEIERPIIHEQYTSA-RKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVF  254 (355)
Q Consensus       176 ~~~~~~~~~~~~~~v~~i~~hp~y~~~-~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~  254 (355)
                      .++.. ....+.+.|+++++||+|+.. ...||||||||++|+.|+++|+|||||..... .....+..++++|||.+..
T Consensus       218 ~~~~~-~~~~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-~~~~~~~~~~v~GWG~~~~  295 (403)
T 1zjk_A          218 TLKRL-SPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAE-SFMRTDDIGTASGWGLTQR  295 (403)
T ss_dssp             CSBTT-CSCCEEEEEEEEEECTTCCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGG-GGSSTTCEEEEEESCTTSS
T ss_pred             ccccC-CCCceEEeEEEEEECCCCCCCCCCcccEEEEEeCCcCcCCCceecccCCCcccc-cccCCCCeEEEEcCCcCCC
Confidence            98643 345688999999999999987 77899999999999999999999999965421 1135678899999999876


Q ss_pred             CCCCCccceEEEEeeeChhHHHhhhhcC---CCCCCCCeEEecccCCCCCCCcCCCCCcceeee--CCeEEEEEEEEeC-
Q psy2626         255 RGPLSPKLRHVQISVVDNPKCRQIFSNY---GATINENILCAGVLSGGKDSCGGDSGGPLMYPL--DTKYYIIGVVSYG-  328 (355)
Q Consensus       255 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~---~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~--~~~~~lvGI~S~g-  328 (355)
                      + ..+..|+++.+++++.++|+..+...   ...++++||||+...++.++|+|||||||++..  +++|+|+||+||| 
T Consensus       296 ~-~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~~~~~~~l~GIvS~g~  374 (403)
T 1zjk_A          296 G-FLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGS  374 (403)
T ss_dssp             S-CCCSBCEEEEEEEECHHHHHHHTTSSSCCSSCSCTTEEEECCSSCCTTSCSCSTTCEEEEEETTTTEEEEEEEEEEEC
T ss_pred             C-ccCcccEEEEEeEeCHHHHhhhhhccccccCcCCCCeEeeccCCCCCCCCcCCCCccEEEEECCCCcEEEEEEEEECC
Confidence            5 36789999999999999999987542   125789999999766678999999999999974  5799999999999 


Q ss_pred             CCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         329 KKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       329 ~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      ..|+..+.|+|||||+.|++||+++|+
T Consensus       375 ~~C~~~~~p~vyt~V~~y~~WI~~~i~  401 (403)
T 1zjk_A          375 MNCGEAGQYGVYTKVINYIPWIENIIS  401 (403)
T ss_dssp             SCC--CCCCEEEEEGGGGHHHHHHHHT
T ss_pred             CCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            789987889999999999999999985

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=100.00  E-value=3.3e-54  Score=382.97  Aligned_cols=233  Identities=38%  Similarity=0.632  Sum_probs=199.0

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||.+|.+++|||||+|.  .         .++|+||||+++||||||||+... ......+.|++|.++.... ..+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~--~---------~~~CgGtLI~~~~VLTAAhC~~~~-~~~~~~~~v~~g~~~~~~~-~~~~   67 (242)
T 3tvj_B            1 IYGGQKAKPGDFPWQVLIL--G---------GTTAAGALLYDNWVLTAAHAVYEQ-KHDASALDIRMGTLKRLSP-HYTQ   67 (242)
T ss_dssp             CBSCEECCTTSSTTEEEEE--S---------SEEEEEEEETTTEEEECHHHHSTT-TTCSSCCEEEESCSBTTCS-CCEE
T ss_pred             CcCCeeCCCCCCCCEEEEe--c---------CCcEEEEEecCCEEEECHHHCCCC-CCCcceEEEEeccccccCc-ccce
Confidence            7899999999999999995  1         478999999999999999999752 1233567899999887543 3477


Q ss_pred             EEEeeeEeCCCCCC-CCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         188 IEIERPIIHEQYTS-ARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       188 ~~v~~i~~hp~y~~-~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      +.|+++++||+|+. ....||||||||++|+.|+++++|||||..... .....+..++++|||.+.. +..+..|+++.
T Consensus        68 ~~v~~i~~hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~-~~~~~~~~~~~~GwG~~~~-~~~~~~l~~~~  145 (242)
T 3tvj_B           68 AWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAE-SFMRTDDIGTASGWGLTQR-GFLARNLMYVD  145 (242)
T ss_dssp             EEEEEEEECTTCCTTSCSTTCCEEEEESSCCCCBTTBCCCBCCCTTGG-GGSCTTCEEEEEESCCCTT-SSCCSBCEEEE
T ss_pred             eeEEEEEeCCCCCCCCCCcCcEEEEEECCccccCCCEecCCcCCCccc-ccccCCCEEEEEEeCCCCC-CCcCccceEEe
Confidence            88999999999997 667799999999999999999999999976531 1245678899999999875 44788899999


Q ss_pred             EeeeChhHHHhhhhcC---CCCCCCCeEEecccCCCCCCCcCCCCCcceeee--CCeEEEEEEEEeC-CCCCCCCCCcEE
Q psy2626         267 ISVVDNPKCRQIFSNY---GATINENILCAGVLSGGKDSCGGDSGGPLMYPL--DTKYYIIGVVSYG-KKCAEVGFPGVY  340 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~---~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~--~~~~~lvGI~S~g-~~C~~~~~p~vy  340 (355)
                      +++++.+.|+..+...   ...+.++||||+...++.++|+|||||||++..  +++|+|+||+||| ..|+..+.|++|
T Consensus       146 ~~i~~~~~C~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~Gi~S~g~~~C~~~~~p~vy  225 (242)
T 3tvj_B          146 IPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVY  225 (242)
T ss_dssp             EEBCCHHHHHHHHHSTTSCTTCCCTTEEEESCTTCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEEEESSTTCTTCCEEE
T ss_pred             eeEEcHHHHHHhhccCCcccccccCCeEEECCCCCCCccccCCCCCeEEEEeCCCCcEEEEEEEEeCCCCCCCCCCCeEE
Confidence            9999999999988642   235889999999776678999999999999974  5799999999999 779988899999


Q ss_pred             EeCcccHHHHHhHhC
Q psy2626         341 TRVTNYIQWIADNIS  355 (355)
Q Consensus       341 t~V~~y~~WI~~~i~  355 (355)
                      |||+.|++||+++|+
T Consensus       226 t~V~~y~~WI~~~i~  240 (242)
T 3tvj_B          226 TKVINYIPWIENIIS  240 (242)
T ss_dssp             EEGGGGHHHHHHHHH
T ss_pred             EEHHHHHHHHHHHHh
Confidence            999999999999874

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=2.7e-54  Score=379.06  Aligned_cols=219  Identities=33%  Similarity=0.672  Sum_probs=190.7

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|..++|||||+| +.         ..++|+||||+++||||||||+.       ....|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l-~~---------~~~~CgGsLIs~~~VLTAAHC~~-------~~~~v~~G~~~~~~~~~~~~   63 (223)
T 3mfj_A            1 IVGGYTCGANTVPYQVSL-NS---------GYHFCGGSLINSQWVVSAAHCYK-------SGIQVRLGEDNINVVEGNEQ   63 (223)
T ss_dssp             CBSCEECCTTSSTTEEEE-ES---------SSEEEEEEEEETTEEEECGGGCC-------SSCEEEESCSSTTSCCSCCE
T ss_pred             CCCCEECCCCcCCEEEEE-Ec---------CCeEEEEEEecCCEEEEhHHhcC-------CCcEEEECCceecccCCCcE
Confidence            689999999999999999 32         14789999999999999999983       246799999887543 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCC-CCCCCccceEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVF-RGPLSPKLRHV  265 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~-~~~~~~~l~~~  265 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....     ..+..++++|||.+.. ....+..|+++
T Consensus        64 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-----~~~~~~~v~GwG~~~~~~~~~~~~L~~~  138 (223)
T 3mfj_A           64 FISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCA-----SAGTQCLISGWGNTKSSGTSYPDVLKCL  138 (223)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSCC-----CTTCEEEEEESSCCCSSSCCCCSSCEEE
T ss_pred             EEEeeEEEECCCCCCCCCCCCEEEEEeCCCcccCCcEeeeECCCCCC-----CCCCEEEEEeeeccCCCCCcccchheEE
Confidence            89999999999999988899999999999999999999999997542     4678899999999863 33457889999


Q ss_pred             EEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcc
Q psy2626         266 QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN  345 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~  345 (355)
                      .+++++.+.|+..+..   .+.+.||||+...++.++|+|||||||++.  +  +|+||+|||..|+..+.|++||||++
T Consensus       139 ~~~~~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~--~--~l~GI~S~g~~C~~~~~p~vyt~V~~  211 (223)
T 3mfj_A          139 KAPILSDSSCKSAYPG---QITSNMFCAGYLEGGKDSCQGDSGGPVVCS--G--KLQGIVSWGSGCAQKNKPGVYTKVCN  211 (223)
T ss_dssp             EEEBCCHHHHHHHSTT---TCCTTEEEESCTTSSCBCCTTCTTCEEEET--T--EEEEEEEECSSSSBTTBCEEEEEGGG
T ss_pred             EEEEeCHHHhhhhhcC---cCCCCEEEccCCCCCCCcCCCCcccceEEC--C--EEEEEEEECCCCCCCCCCeEEEEHHH
Confidence            9999999999987753   578999999876557899999999999984  2  69999999999998788999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++|+
T Consensus       212 ~~~WI~~~i~  221 (223)
T 3mfj_A          212 YVSWIKQTIA  221 (223)
T ss_dssp             GHHHHHHHHH
T ss_pred             hHHHHHHHHh
Confidence            9999999873

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=100.00  E-value=4e-54  Score=380.71  Aligned_cols=223  Identities=25%  Similarity=0.511  Sum_probs=191.4

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC---CC
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT---SS  184 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~---~~  184 (355)
                      |+||+   +++|||||+|.+..        ..++|+||||+++||||||||+.... .....+.|++|.++....   ..
T Consensus         1 IvgG~---~~~~Pw~v~l~~~~--------~~~~CgGtLI~~~~VLTAAHC~~~~~-~~~~~~~v~~G~~~~~~~~~~~~   68 (234)
T 2asu_B            1 VVGGH---PGNSPWTVSLRNRQ--------GQHFCGGSLVKEQWILTARQCFSSCH-MPLTGYEVWLGTLFQNPQHGEPS   68 (234)
T ss_dssp             CBSCE---ECCCTTEEEEECTT--------SCEEEEEEEEETTEEEEEGGGSSCTT-CCCTTCEEEESCSBSSCCTTCTT
T ss_pred             CCCcc---cCCCcceEEeeccC--------CCEEEEEEEEeCCEEEECHHHcCCCC-CCcccEEEEEeeeeccCCCCCCc
Confidence            68898   57899999996531        25899999999999999999996521 223567899999887643   45


Q ss_pred             cEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceE
Q psy2626         185 GVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRH  264 (355)
Q Consensus       185 ~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~  264 (355)
                      .+.+.|+++++||.+      ||||||||++|+.|+++++|||||....   ....+..++++|||.+.... .+..|++
T Consensus        69 ~~~~~v~~i~~hp~~------~DiALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~-~~~~L~~  138 (234)
T 2asu_B           69 LQRVPVAKMVCGPSG------SQLVLLKLERSVTLNQRVALICLPPEWY---VVPPGTKCEIAGWGETKGTG-NDTVLNV  138 (234)
T ss_dssp             CEEEEEEEEEECSTT------CCEEEEEESSCCCCSSSSCCCBCCCTTC---CCCTTCEEEEEESSCCTTSS-CTTBCEE
T ss_pred             eEEEEEEEEecCCCC------CCeEEEEeCCcCcCCCcEeccCCCCccc---cCCCCCEEEEEeCCccCCCC-CCccceE
Confidence            688999999999973      8999999999999999999999997543   34567889999999987655 5778999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCc
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT  344 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~  344 (355)
                      +.+++++.+.|+..+.   ..+.+.||||+...++.++|+|||||||++..+++|+|+||+|||..|+..+.|+|||||+
T Consensus       139 ~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~  215 (234)
T 2asu_B          139 ALLNVISNQECNIKHR---GRVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVS  215 (234)
T ss_dssp             EEEEEECHHHHHHHTT---TCCCTTEEEECCCSSCCBCCTTCTTCEEEEEETTEEEEEEEECCCSSSSCTTCCEEEEEGG
T ss_pred             EEeeEEcHHHcccccC---CccCcceEeecCCCCCCeeccCCCCCceEEEECCeEEEEEEEEcCCCCCCCCCCeEEEEHH
Confidence            9999999999998774   3578999999876667899999999999999999999999999999999888899999999


Q ss_pred             ccHHHHHhHhC
Q psy2626         345 NYIQWIADNIS  355 (355)
Q Consensus       345 ~y~~WI~~~i~  355 (355)
                      .|++||+++|+
T Consensus       216 ~~~~WI~~~~~  226 (234)
T 2asu_B          216 VFVDWIHKVMR  226 (234)
T ss_dssp             GSHHHHHHHC-
T ss_pred             HHHHHHHHHhh
Confidence            99999999874

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=100.00  E-value=2.6e-54  Score=379.45  Aligned_cols=223  Identities=34%  Similarity=0.630  Sum_probs=192.5

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||.+|.+++|||||+|.+.         ..++|+||||+++||||||||+...   ....+.|++|.++..  ...+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~---------~~~~CgGtLI~~~~VLTAAHC~~~~---~~~~~~v~~G~~~~~--~~~~~   66 (224)
T 1pq7_A            1 IVGGTSASAGDFPFIVSISRN---------GGPWCGGSLLNANTVLTAAHCVSGY---AQSGFQIRAGSLSRT--SGGIT   66 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEET---------TEEEEEEEEEETTEEEECHHHHTTS---CGGGEEEEESCSBSS--SSSEE
T ss_pred             CCCCEECCCCCcCeEEEEEEC---------CCeEEEEEEecCCEEEEcHHccCCC---CCCceEEEeCcceec--CCCEE
Confidence            789999999999999999642         1489999999999999999999752   234688999998874  35688


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC-CCCccceEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRHVQ  266 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~  266 (355)
                      +.|+++++||+|+..  .||||||||++|+.|+++++|||||....   ....+..++++|||.+...+ ..+..|+++.
T Consensus        67 ~~v~~i~~hp~y~~~--~~DiALl~L~~~~~~~~~v~picL~~~~~---~~~~g~~~~v~GwG~~~~~~~~~~~~l~~~~  141 (224)
T 1pq7_A           67 SSLSSVRVHPSYSGN--NNDLAILKLSTSIPSGGNIGYARLAASGS---DPVAGSSATVAGWGATSEGGSSTPVNLLKVT  141 (224)
T ss_dssp             ECEEEEEECTTCBTT--BTCCEEEEESSCCCCBTTBCCCCBCCTTC---CCCTTCEEEEEESCCSSTTCSCCCSBCEEEE
T ss_pred             EEEEEEEECCCCCCC--CCCEEEEEeCCCCcCCCcccceecCCccc---CCCCCCEEEEEecCCcCCCCCcccceeeEeE
Confidence            999999999999876  79999999999999999999999995432   23578899999999987654 4677899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.+.|+..+..  ..+.+.||||+....+.++|+|||||||++.. +  +|+||+|||..|+..+.|++||||+.|
T Consensus       142 ~~~~~~~~C~~~~~~--~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-g--~l~Gi~S~g~~C~~~~~p~vyt~V~~~  216 (224)
T 1pq7_A          142 VPIVSRATCRAQYGT--SAITNQMFCAGVSSGGKDSCQGDSGGPIVDSS-N--TLIGAVSWGNGCARPNYSGVYASVGAL  216 (224)
T ss_dssp             EEEECHHHHHHHHCT--TTSCTTEEEECCTTCCCBCCTTCTTCEEECTT-C--CEEEEEEECSSSSCTTCCEEEEETTTS
T ss_pred             EEEEcHHHhhHhhcC--CCCCCCeEEeecCCCCCCCCcCCCCcceECcC-C--eEEEEEEeCCCCCCCCCCeEEEEHHHH
Confidence            999999999988752  25789999998766678999999999999853 2  799999999999988889999999999


Q ss_pred             HHHHHhHh
Q psy2626         347 IQWIADNI  354 (355)
Q Consensus       347 ~~WI~~~i  354 (355)
                      ++||+++|
T Consensus       217 ~~WI~~~i  224 (224)
T 1pq7_A          217 RSFIDTYA  224 (224)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhC
Confidence            99999986

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=100.00  E-value=2.1e-54  Score=379.55  Aligned_cols=220  Identities=33%  Similarity=0.633  Sum_probs=190.7

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||.+|.+++|||||+|++..         .++|+||||+++||||||||+...  .....+.|++|.+++.  ...+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---------~~~CgGtLIs~~~VLTAAHC~~~~--~~~~~~~v~~G~~~~~--~~~~~   67 (222)
T 1eq9_A            1 IVGGKDAPVGKYPYQVSLRLSG---------SHRCGASILDNNNVLTAAHCVDGL--SNLNRLKVHVGTNYLS--ESGDV   67 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT---------EEEEEEEECSSSEEEECHHHHTTC--SCGGGEEEEESCSBTT--SCCEE
T ss_pred             CCCCEECCCCCcceEEEEEeCC---------CeEEEEEEeeCCEEEEhhhcCCCC--CCCceEEEEECceecC--CCCeE
Confidence            7899999999999999997532         479999999999999999999752  2235688999998774  34678


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI  267 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~  267 (355)
                      +.|+++++||+|+.....||||||||++|+.|+++++|||||....    ...+..++++|||.+...+..+..|+++.+
T Consensus        68 ~~v~~~~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~----~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~  143 (222)
T 1eq9_A           68 YDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDE----DLESNPCTLTGWGSTRLGGNTPNALQEIEL  143 (222)
T ss_dssp             EEEEEEEECTTCBTTTTBCCCEEEEESSCCCCBTTBCCCEECSCCT----TCTTSEEEEEECCCSSTTCCCCSBCEEEEE
T ss_pred             EEEEEEEECCCCCCCCCCCCEEEEEECCccccCCceEccCCCCCCc----CCCCCEEEEEcccccCCCCcccchheEeEE
Confidence            9999999999999888889999999999999999999999997653    246788999999998776667788999999


Q ss_pred             eeeChhHHH-hhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         268 SVVDNPKCR-QIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       268 ~~~~~~~C~-~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      ++++.+.|+ ..+     .+.+.||||+.. .+.++|+|||||||++..    +|+||+|||..|+. +.|++||||++|
T Consensus       144 ~~~~~~~C~~~~~-----~~~~~~~Ca~~~-~~~~~C~GDSGgPL~~~~----~l~GI~S~g~~C~~-~~p~vyt~V~~~  212 (222)
T 1eq9_A          144 IVHPQKQCERDQW-----RVIDSHICTLTK-RGEGACHGDSGGPLVANG----AQIGIVSFGSPCAL-GEPDVYTRVSSF  212 (222)
T ss_dssp             EEECHHHHHHHSS-----SCCTTEEEECCC-TTCBCCTTCTTCEEEETT----EEEEEEEECSTTTS-SSCEEEEEGGGG
T ss_pred             EEeCHHHhCcccC-----CCCccEEeecCC-CCCeeeeCCccceEEECC----EEEEEEEECCCcCC-CCCCEEEEHHHH
Confidence            999999998 433     267899999874 378999999999999842    79999999999987 679999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       213 ~~WI~~~~~  221 (222)
T 1eq9_A          213 VSWINANLK  221 (222)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHHHhh
Confidence            999999885

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=100.00  E-value=4.6e-55  Score=405.09  Aligned_cols=242  Identities=29%  Similarity=0.539  Sum_probs=195.9

Q ss_pred             CCCCCCc--CCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCC--CCcCceE
Q psy2626          96 ECGVNAF--NSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTT--GEYEPYI  171 (355)
Q Consensus        96 ~CG~~~~--~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~--~~~~~~~  171 (355)
                      .||+...  ....||+||.+|.+++|||||+|..           .+.|+||||+++||||||||+.....  .....+.
T Consensus        76 ~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~-----------~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~  144 (329)
T 1md8_A           76 VCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNI-----------HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLD  144 (329)
T ss_dssp             CCSCCSSCCCCC--CBSCCBCCTTSCTTEEEEES-----------SSEEEEEEETTTEEEECGGGTSCTTC-----CCCC
T ss_pred             CCCCCCCcccccccccCCEECCCCCCCCeEeecc-----------CCCcceEEecCCEEEecCCEEEeCCcccCCCceEE
Confidence            6998532  2357999999999999999999853           14699999999999999999974211  1224467


Q ss_pred             EEeccccccCCCCcEEEEEeeeEeCCCCCCC---CCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEE
Q psy2626         172 VHVGSIDLEDTSSGVSIEIERPIIHEQYTSA---RKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAG  248 (355)
Q Consensus       172 v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~---~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~G  248 (355)
                      |++|.++.......+.+.|+++++||+|+..   ...||||||||++|+.|+++|+|||||....   ....+..++++|
T Consensus       145 V~~G~~~~~~~~~~~~~~V~~i~~Hp~y~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~---~~~~g~~~~v~G  221 (329)
T 1md8_A          145 VFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT---FYDLGLMGYVSG  221 (329)
T ss_dssp             EEESCSBHHHHHHHCCCCEEEEEECSSCCSSCTTCCTTCCEEEEESSCCCCBTTBCCCBCCCSGG---GGCTTCEEEEEE
T ss_pred             EEeccccccccccccceeeEEEEECCCcccccCCCCCccEEEEEECCcccCCCceEccccCCCcc---ccCCCCEEEEEe
Confidence            9999887643222345689999999999865   6679999999999999999999999996542   234678899999


Q ss_pred             eccCCCCCCCCccceEEEEeeeChhHHHhhhhcC--CCCCCCCeEEecccCCCCCCCcCCCCCcceee--eCCeEEEEEE
Q psy2626         249 WGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY--GATINENILCAGVLSGGKDSCGGDSGGPLMYP--LDTKYYIIGV  324 (355)
Q Consensus       249 wG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~--~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~--~~~~~~lvGI  324 (355)
                      ||.+...  .+..|+++.+++++.+.|+..+...  ...++++||||+...++.++|+|||||||++.  .+++|+|+||
T Consensus       222 WG~t~~~--~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~~~iCAg~~~~~~d~C~GDSGGPL~~~~~~~~~~~l~GI  299 (329)
T 1md8_A          222 FGVMEEK--IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGI  299 (329)
T ss_dssp             CCBCSSS--BCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCSCBCCTTTTTCEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCC--CCccceEEEEEEcCHHHHHHHhhcccccccCCCCeEeeecCCCCCcCCCCccccceEEEECCCCcEEEEEE
Confidence            9988653  5778999999999999999877532  23578999999976557899999999999996  3579999999


Q ss_pred             EEeCCCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         325 VSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       325 ~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      +|||.+|+.  .|+|||||+.|++||+++|+
T Consensus       300 vS~G~~C~~--~~gvyT~V~~y~~WI~~~i~  328 (329)
T 1md8_A          300 VSWGIGCSR--GYGFYTKVLNYVDWIKKEME  328 (329)
T ss_dssp             EEECSSSSS--SCEEEEEGGGTHHHHHHHHH
T ss_pred             EEECCCcCC--CCcEEEEHHHHHHHHHHHHh
Confidence            999999985  48999999999999999873

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=100.00  E-value=6.3e-54  Score=377.71  Aligned_cols=225  Identities=30%  Similarity=0.567  Sum_probs=196.6

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||+++.+++|||||+|.+...     ....++|+||||+++||||||||+.       ....|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-----~~~~~~CgGtLI~~~~VLTAAHC~~-------~~~~v~~G~~~~~~~~~~~~   68 (227)
T 3fzz_A            1 IIGGNEISPHSRPYMAYYEFLKV-----GGKKMFCGGFLVRDKFVLTAAHCKG-------RSMTVTLGAHNIKAKEETQQ   68 (227)
T ss_dssp             CBTCEECCTTSSTTEEEEEEECS-----SSCEEEEEEEEEETTEEEECTTCCC-------EEEEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCcCCEEEEEEEeC-----CCceeEEEEEEEeCCEEEECcccCC-------CCcEEEEcccccCCCCCCce
Confidence            78999999999999999987532     2236899999999999999999984       357899999887654 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|+++.
T Consensus        69 ~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  145 (227)
T 3fzz_A           69 IIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNA---HVKPGDECYVAGWGKVTPDGEFPKTLHEVK  145 (227)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTC---CCCTTCEEEEEESSCSSTTSCCCSBCEEEE
T ss_pred             EEEEEEEEECcCCCCCCCcCCEEEEEECCcCCCCCcccccCCCCccc---CCCCCCEEEEEECCcccCCCCCCCeeeEEE
Confidence            89999999999999988899999999999999999999999997654   345788999999999877666788999999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.+.|+..+..  ....+.+||++....+.+.|+|||||||++..    +|+||+|||..|+..  |++||||+.|
T Consensus       146 ~~~~~~~~C~~~~~~--~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~----~l~Gi~S~g~~c~~~--p~vyt~V~~~  217 (227)
T 3fzz_A          146 LTVQKDQVCESQFQS--SYNRANEICVGDSKIKGASFEEDSGGPLVCKR----AAAGIVSYGQTDGSA--PQVFTRVLSF  217 (227)
T ss_dssp             EEBCCHHHHHHHHTT--TCCTTTEEEECCCSSCBCCTTTTTTCEEEETT----EEEEEEEECCTTCSS--SEEEEEGGGT
T ss_pred             eeeecHHHhhhhhcc--ccCCCceEEEeCCCCCCcccccCCccceEEec----CCcEEEEECCCCCCC--CeEEEEhHHh
Confidence            999999999987754  24578999999766678999999999999853    799999999998764  9999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       218 ~~WI~~~i~  226 (227)
T 3fzz_A          218 VSWIKKTMK  226 (227)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999999985

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.3e-55  Score=420.44  Aligned_cols=241  Identities=32%  Similarity=0.576  Sum_probs=198.5

Q ss_pred             CCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCC---CCCCcCceEEEeccccccC
Q psy2626         105 SKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPD---TTGEYEPYIVHVGSIDLED  181 (355)
Q Consensus       105 ~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~---~~~~~~~~~v~~G~~~~~~  181 (355)
                      ..||+||.+|.+++|||||+|+...       ...++||||||+++||||||||+...   .......+.|++|.++...
T Consensus       163 ~~RIvgG~~a~~g~~Pw~v~l~~~~-------~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~~V~lG~~~~~~  235 (424)
T 3nxp_A          163 DGRIVEGSDAEIGMSPWQVMLFRKS-------PQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTR  235 (424)
T ss_dssp             SSCCCCCEECCTTSCTTEEEEEETT-------TTEEEEEEEESSSSEEEECHHHHEEGGGTEECCGGGEEEEESCCBSSS
T ss_pred             CCeeECCEECCCCCCCCEEEEeecC-------CCCccceeEEEcCCEEEEhHHhcCccccccccCcccEEEEeCcccccc
Confidence            4699999999999999999996532       13589999999999999999999521   0112346889999998765


Q ss_pred             C--CCcEEEEEeeeEeCCCCC-CCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCC----
Q psy2626         182 T--SSGVSIEIERPIIHEQYT-SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVF----  254 (355)
Q Consensus       182 ~--~~~~~~~v~~i~~hp~y~-~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~----  254 (355)
                      .  ...+.+.|+++++||+|+ .....||||||||++|+.|+++|+|||||...........+..++++|||.+..    
T Consensus       236 ~~~~~~~~~~V~~ii~Hp~y~~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~g~~~~v~GWG~t~~~~~~  315 (424)
T 3nxp_A          236 YERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA  315 (424)
T ss_dssp             CCTTTCEEECEEEEEECTTCBTTTTSBTCCEEEEESSCCCCCSSCCCCBCCCHHHHHHHHHHCSEEEEEESSHHHHHHHH
T ss_pred             cCCCceeEEEEEEEEeCCCCCCCCCCcCCeEEEEecCccccCCcccccCCCCcccccccccCCCeEEEEecCCCCccCcc
Confidence            3  235677899999999998 456779999999999999999999999996542211234678899999997642    


Q ss_pred             --CCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccC---CCCCCCcCCCCCcceeee--CCeEEEEEEEEe
Q psy2626         255 --RGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS---GGKDSCGGDSGGPLMYPL--DTKYYIIGVVSY  327 (355)
Q Consensus       255 --~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~---~~~~~C~GDsGgPL~~~~--~~~~~lvGI~S~  327 (355)
                        ....+..|+++.+++++.+.|+..+.   ..+.++||||+...   .+.++|+|||||||++..  +++|+|+||+||
T Consensus       316 ~~~~~~~~~L~~~~v~ii~~~~C~~~~~---~~i~~~~iCAg~~~~~~~~~d~C~GDSGGPLv~~~~~~~~~~l~GIvS~  392 (424)
T 3nxp_A          316 NVGKGQPSVLQVVNLPIVERPVCKDSTR---IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSW  392 (424)
T ss_dssp             C----CCSBCEEEEEEBCCHHHHHHTCS---SCCCTTEEEESCCCBTTBCCCTTCSCTTCEEEEECTTTCCEEEEEEECC
T ss_pred             ccCCCCCccceEEEeeEEcHHHhhhhcc---CcCCCCeEecccCCCCCCCCccCCCcCCCceEEEECCCCcEEEEEEEEe
Confidence              12237789999999999999998764   36899999998642   246999999999999986  689999999999


Q ss_pred             CCCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         328 GKKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       328 g~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      |.+|+..+.|+|||||+.|++||+++|+
T Consensus       393 G~~C~~~~~pgVyT~Vs~y~~WI~~~i~  420 (424)
T 3nxp_A          393 GEGCDRDGKYGFYTHVFRLKKWIQKVID  420 (424)
T ss_dssp             SSCTTTCCSCEEEEECTTCHHHHHHHHH
T ss_pred             CCCCCCCCCCEEEEEHHHHHHHHHHHHH
Confidence            9999998899999999999999999874

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.8e-54  Score=380.71  Aligned_cols=220  Identities=34%  Similarity=0.660  Sum_probs=190.7

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|++..         .++|+||||+++||||||||+..       ...|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---------~~~CgGsLIs~~~VLTAAHC~~~-------~~~v~~G~~~~~~~~~~~~   64 (238)
T 1spj_A            1 IVGGWECEQHSQPWQAALYHFS---------TFQCGGILVHRQWVLTAAHCISD-------NYQLWLGRHNLFDDENTAQ   64 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT---------EEEEEEEEEETTEEEECGGGCCS-------SEEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEeCC---------CeeEEEEEecCCEEEEcHHhCCC-------CceEEEEeccccCCCCCce
Confidence            7899999999999999996532         48999999999999999999963       46799999887654 4567


Q ss_pred             EEEEeeeEeCCCCC-----------CCCCCCCeEEEEeCCCCC-CCCCccccccCCCCCccccccCCCceEEEEeccCCC
Q psy2626         187 SIEIERPIIHEQYT-----------SARKLNDIALFRLREDAP-LSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVF  254 (355)
Q Consensus       187 ~~~v~~i~~hp~y~-----------~~~~~~DIALl~L~~~v~-~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~  254 (355)
                      .+.|+++++||+|+           .....||||||||++|+. |+++++|||||....     ..+..++++|||.+..
T Consensus        65 ~~~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~~v~pi~L~~~~~-----~~~~~~~v~GwG~~~~  139 (238)
T 1spj_A           65 FVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEP-----EVGSTCLASGWGSIEP  139 (238)
T ss_dssp             EECEEEEEECTTSCGGGGCC--CTTTCCCTTCCEEEEESSCCCCSSTTCCCCCCCSSCC-----CTTCEEEEEESSCSSS
T ss_pred             EEEEEEEEcCCCccccccccccccccccCCCCeEEEEECccccccCCceeeccCCCCCC-----CCCCEEEEEecCCCCC
Confidence            88999999999998           356679999999999998 999999999996542     4678899999999875


Q ss_pred             CC-CCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeC-CCCC
Q psy2626         255 RG-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCA  332 (355)
Q Consensus       255 ~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g-~~C~  332 (355)
                      .+ ..+..|+++.+++++.++|+..+..   .+.+.||||+...++.++|.|||||||++.    ++|+||+||| ..|+
T Consensus       140 ~~~~~~~~L~~~~~~~~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~----~~l~Gi~S~g~~~C~  212 (238)
T 1spj_A          140 ENFSFPDDLQCVDLKILPNDECKKAHVQ---KVTDFMLCVGHLEGGKDTCVGDSGGPLMCD----GVLQGVTSWGYVPCG  212 (238)
T ss_dssp             SSCCCCSBCEEEEEEEECHHHHHHHCSS---CCCTTEEEEECTTCSSBCCTTCTTCEEEET----TEEEEEEEECCSSTT
T ss_pred             CCCCCcCcccEEEEeecCHHHhhhhccC---CCCCCeEEeeCCCCCCCCCCCCCCCcEEEc----CEEEEEEEeCCCCCC
Confidence            44 4678899999999999999987753   578999999976557899999999999984    2899999999 6799


Q ss_pred             CCCCCcEEEeCcccHHHHHhHhC
Q psy2626         333 EVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       333 ~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      ..+.|+|||||++|++||+++|+
T Consensus       213 ~~~~p~vyt~V~~y~~WI~~~i~  235 (238)
T 1spj_A          213 TPNKPSVAVRVLSYVKWIEDTIA  235 (238)
T ss_dssp             CTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCCeEEEEHHHhHHHHHHHhh
Confidence            88889999999999999999873

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=100.00  E-value=3.3e-54  Score=382.06  Aligned_cols=220  Identities=34%  Similarity=0.635  Sum_probs=190.1

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|.+.         ..++|+||||+++||||||||+..       ...|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~---------~~~~CgGsLIs~~~VLTAAHC~~~-------~~~v~~G~~~~~~~~~~~~   64 (237)
T 2zch_P            1 IVGGWECEKHSQPWQVLVASR---------GRAVCGGVLVHPQWVLTAAHCIRN-------KSVILLGRHSLFHPEDTGQ   64 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEESS---------SSEEEEEEEEETTEEEECGGGCCS-------SCEEEESCSBSSSCCTTCE
T ss_pred             CCCCEECCCCCCCCEEEEeeC---------CCeEEEEEEecCCEEEEcHHhcCC-------CceEEEecccccCCCCCcE
Confidence            789999999999999999643         247999999999999999999964       23689999887543 4568


Q ss_pred             EEEEeeeEeCCCCCCCCC-----------CCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCC
Q psy2626         187 SIEIERPIIHEQYTSARK-----------LNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFR  255 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~-----------~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~  255 (355)
                      .+.|+++++||+|+....           .||||||||++|+.|+++++|||||...     ...+..++++|||.+...
T Consensus        65 ~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~Lp~~~-----~~~~~~~~v~GwG~~~~~  139 (237)
T 2zch_P           65 VFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQE-----PALGTTCYASGWGSIEPE  139 (237)
T ss_dssp             EEEEEEEEECTTSCGGGGTSSSCCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCSSC-----CCTTCEEEEEESCCSSSS
T ss_pred             EEEEEEEecCCCcchhhhcccccccCCCCCcceEEEEeCCCCccCCcEeeeECCCCC-----CCCCCEEEEEeCCccCCC
Confidence            899999999999987654           6899999999999999999999999753     346788999999998765


Q ss_pred             CC-CCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC-CCCC
Q psy2626         256 GP-LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAE  333 (355)
Q Consensus       256 ~~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~-~C~~  333 (355)
                      .. .+..|+++.+++++.+.|+..+..   .+.+.||||+...++.++|+|||||||++..    +|+||+|||. .|+.
T Consensus       140 ~~~~~~~L~~~~~~~~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~  212 (237)
T 2zch_P          140 EFLTPKKLQCVDLHVISNDVCAQVHPQ---KVTKFMLCAGRWTGGKSTCSGDSGGPLVCNG----VLQGITSWGSEPCAL  212 (237)
T ss_dssp             SCCCCSBCEEEEEEEECHHHHHHHCSS---BCCTTEEEEECTTCSCBCCTTCTTCEEESSS----SEEEEEEECCSSTTC
T ss_pred             CCcCCcccEEeEEEEeCHHHhcccccC---CCCceEEeecCCCCCCcccCCCccCeEEECC----EEEEEEEeCcCCCCC
Confidence            43 377899999999999999987653   5788999999766678999999999999853    7999999998 6988


Q ss_pred             CCCCcEEEeCcccHHHHHhHhC
Q psy2626         334 VGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       334 ~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      .+.|++||||++|++||+++|+
T Consensus       213 ~~~p~vyt~V~~~~~WI~~~i~  234 (237)
T 2zch_P          213 PERPSLYTKVVHYRKWIKDTIV  234 (237)
T ss_dssp             TTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCcEEEEHHHHHHHHHHHHh
Confidence            7889999999999999999873

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=100.00  E-value=3.5e-54  Score=381.89  Aligned_cols=220  Identities=32%  Similarity=0.671  Sum_probs=190.6

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|.+..         .++|+||||+++||||||||+.       ....|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---------~~~CgGtLI~~~~VLTAAHC~~-------~~~~v~~G~~~~~~~~~~~~   64 (237)
T 1ao5_A            1 VVGGFNCEKNSQPWQVAVYYQK---------EHICGGVLLDRNWVLTAAHCYV-------DQYEVWLGKNKLFQEEPSAQ   64 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT---------EEEEEEEEEETTEEEECTTCCC-------SSCEEEESCCBSSSCCSSCE
T ss_pred             CCCCeECCCCCcCCEEEEeeCC---------CeEEEEEEeeCCEEEECHHHCC-------CCCEEEecccccccCCCCcE
Confidence            7899999999999999997532         4899999999999999999995       246799999887643 3467


Q ss_pred             EEEEeeeEeCCCCCCCCC-----------CCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCC
Q psy2626         187 SIEIERPIIHEQYTSARK-----------LNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFR  255 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~-----------~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~  255 (355)
                      .+.|+++++||+|+....           .||||||||++|+.|+++++|||||...     ...+..++++|||.+...
T Consensus        65 ~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~-----~~~~~~~~v~GwG~~~~~  139 (237)
T 1ao5_A           65 HRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKE-----PKPGSKCLASGWGSITPT  139 (237)
T ss_dssp             ECCEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSC-----CCTTCEEEEEESCCSSCC
T ss_pred             EEEEEEEEcCCCcCcccccccccccccCCCCCEEEEEeCCccccCCceeCCCcCCCC-----CCCCCEEEEEECCccCCC
Confidence            889999999999987655           7999999999999999999999999754     256889999999998765


Q ss_pred             -CCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeC-CCCCC
Q psy2626         256 -GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAE  333 (355)
Q Consensus       256 -~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g-~~C~~  333 (355)
                       ...+..|+++.+++++.+.|+..|..   .+.+.||||+....+.++|+|||||||++.  +  +|+||+||| ..|+.
T Consensus       140 ~~~~~~~L~~~~~~~~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~--~--~l~Gi~S~g~~~C~~  212 (237)
T 1ao5_A          140 RWQKPDDLQCVFITLLPNENCAKVYLQ---KVTDVMLCAGEMGGGKDTCRDDSGGPLICD--G--ILQGTTSYGPVPCGK  212 (237)
T ss_dssp             -CCCCSBCEEEEEEEECHHHHHHHCSS---CCCTTEEEEECTTCSCBCCTTCTTCEEEET--T--EEEEEEEECCSSTTC
T ss_pred             CCCCCCcccEEEEEecChhHhhhhhcc---cCCCCEEEEccCCCCCCCCCCCCcceEEEC--C--EEeEEEeEcCCCCCC
Confidence             34678899999999999999988753   578999999844457899999999999983  2  799999999 67998


Q ss_pred             CCCCcEEEeCcccHHHHHhHhC
Q psy2626         334 VGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       334 ~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      .+.|++||||+.|++||+++|+
T Consensus       213 ~~~p~vyt~V~~~~~WI~~~~~  234 (237)
T 1ao5_A          213 PGVPAIYTNLIKFNSWIKDTMM  234 (237)
T ss_dssp             TTCCEEEECGGGGHHHHHHHHH
T ss_pred             CCCCcEEEEHHHHHHHHHHHHh
Confidence            8899999999999999999873

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=100.00  E-value=7.8e-54  Score=376.35  Aligned_cols=219  Identities=34%  Similarity=0.694  Sum_probs=190.2

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||.+|..++|||||+|+ ..        ..++|+||||+++||||||||+.       ....|++|.+++. ....+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~-~~--------~~~~CgGtLI~~~~VLTAAHC~~-------~~~~v~~G~~~~~-~~~~~~   63 (224)
T 2qxi_A            1 IIDGAPCARGSHPWQVALL-SG--------NQLHCGGVLVNERWVLTAAHCKM-------NEYTVHLGSDTLG-DRRAQR   63 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEE-ET--------TEEEEEEEEEETTEEEECGGGCC-------SCEEEEESCSBTT-CTTSEE
T ss_pred             CCCCeECCCCCCCCEEEEe-eC--------CCeEEEEEEecCCEEEEhHHcCC-------CCcEEEEeeeecC-CCccEE
Confidence            7899999999999999993 21        13589999999999999999983       2578999998875 345688


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCC-CCCCCccceEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVF-RGPLSPKLRHVQ  266 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~-~~~~~~~l~~~~  266 (355)
                      +.|+++++||+|+.....||||||||++|+.|+++++|||||....     ..+..++++|||.+.. ....+..|+++.
T Consensus        64 ~~v~~~~~Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-----~~~~~~~v~GwG~~~~~~~~~~~~L~~~~  138 (224)
T 2qxi_A           64 IKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCE-----PPGTTCTVSGWGTTTSPDVTFPSDLMCVD  138 (224)
T ss_dssp             EEECEEEECTTCCTTTCTTCCEEEECSSCCCCBTTBCCCCCCSSCC-----CTTCEEEEEESSCSSSSSCCCCSBCEEEE
T ss_pred             EEEEEEEECCCCCCCCCcCcEEEEEeCCCCcCCCceeeEECCCCCC-----CCCCEEEEEeCCccCCCCCCCChhheEEE
Confidence            9999999999999988889999999999999999999999997542     4678899999999863 334678899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeC-CCCCCCCCCcEEEeCcc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTN  345 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g-~~C~~~~~p~vyt~V~~  345 (355)
                      +++++.++|+..+..   .+.+.||||+....+.++|+|||||||++..    +|+||+||| ..|+..+.|+|||||++
T Consensus       139 ~~~~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~  211 (224)
T 2qxi_A          139 VKLISPQDCTKVYKD---LLENSMLCAGIPDSKKNACNGDSGGPLVCRG----TLQGLVSWGTFPCGQPNDPGVYTQVCK  211 (224)
T ss_dssp             EEEECHHHHHHHHGG---GCCTTEEEEECTTCCCBCCTTCTTCEEEETT----EEEEEEEECCSSSCCTTCCEEEEEGGG
T ss_pred             eeecCHHHhhHHhcC---cCCCCeEEecCCCCCCccCCCCccccEEECC----EEEEEEEeCCCCCCCCCCCeEEEEHHH
Confidence            999999999998754   5789999998765578999999999999832    699999999 57998788999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++|+
T Consensus       212 ~~~WI~~~~~  221 (224)
T 2qxi_A          212 FTKWINDTMK  221 (224)
T ss_dssp             SHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999873

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=100.00  E-value=2e-54  Score=388.18  Aligned_cols=238  Identities=32%  Similarity=0.574  Sum_probs=195.9

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCC---CCCCcCceEEEeccccccCC--
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPD---TTGEYEPYIVHVGSIDLEDT--  182 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~---~~~~~~~~~v~~G~~~~~~~--  182 (355)
                      |+||.+|.+++|||+|+|+....       ..++|+||||+++||||||||+...   .......+.|++|.++....  
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-------~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~   73 (259)
T 3rm2_H            1 IVEGSDAEIGMSPWQVMLFRKSP-------QELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYER   73 (259)
T ss_dssp             CBSCEECCTTSSTTEEEEEEETT-------EEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCT
T ss_pred             CCCCEECCCCCcCCEEEEEECCC-------CceEEEEEEEeCCEEEEcHHhCcccccccccCcccEEEEECccccccccc
Confidence            78999999999999999965321       2589999999999999999999531   11123467899999887543  


Q ss_pred             CCcEEEEEeeeEeCCCCC-CCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC-----
Q psy2626         183 SSGVSIEIERPIIHEQYT-SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-----  256 (355)
Q Consensus       183 ~~~~~~~v~~i~~hp~y~-~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-----  256 (355)
                      ...+...|+++++||+|+ .....||||||||++|+.|+++++|||||...........+..++++|||.+....     
T Consensus        74 ~~~~~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~  153 (259)
T 3rm2_H           74 NIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVG  153 (259)
T ss_dssp             TTCEEEEEEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESCCSSCC------
T ss_pred             CcceeeEEEEEEECCCCCCCCCCCCcEEEEEeCCceEcCCCcccccCCCccccccccCCCCEEEEeecCCCcCcCCcccc
Confidence            234556699999999998 45677999999999999999999999999754322223568889999999876431     


Q ss_pred             -CCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccC---CCCCCCcCCCCCcceeee--CCeEEEEEEEEeCCC
Q psy2626         257 -PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS---GGKDSCGGDSGGPLMYPL--DTKYYIIGVVSYGKK  330 (355)
Q Consensus       257 -~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~---~~~~~C~GDsGgPL~~~~--~~~~~lvGI~S~g~~  330 (355)
                       ..+..|+++.+++++.+.|+..+.   ..+.++||||+...   ...++|+|||||||++..  +++|+|+||+|||..
T Consensus       154 ~~~~~~l~~~~~~~~~~~~C~~~~~---~~~~~~~~Cag~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~GI~S~g~~  230 (259)
T 3rm2_H          154 KGQPSVLQVVNLPIVERPVCKDSTR---IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG  230 (259)
T ss_dssp             -CCCSBCEEEEEEBCCHHHHHHTCS---SCCCTTEEEECCCGGGSCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSS
T ss_pred             ccccccceEEEEEEeCHHHhhhhhc---ccCCCceEeeeccCCCCCCCcccCCCCCCeeEEEECCCCCEEEEEEEEECCC
Confidence             126789999999999999998764   36889999998532   246899999999999987  789999999999999


Q ss_pred             CCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         331 CAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       331 C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      |+..+.|++||||+.|++||+++|+
T Consensus       231 C~~~~~p~vyt~V~~~~~WI~~~i~  255 (259)
T 3rm2_H          231 CDRDGKYGFYTHVFRLKKWIQKVID  255 (259)
T ss_dssp             SSCTTCCEEEEETGGGHHHHHHHHH
T ss_pred             CCCCCCCeEEEEHHHhHHHHHHHHH
Confidence            9988899999999999999999874

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=100.00  E-value=1e-53  Score=375.66  Aligned_cols=222  Identities=32%  Similarity=0.538  Sum_probs=189.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.++.+++|||||+|.+...     + ..++|+||||+++||||||||+..       ...|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-----~-~~~~CgGsLI~~~~VLTAAHC~~~-------~~~v~~G~~~~~~~~~~~~   67 (224)
T 1cgh_A            1 IIGGRESRPHSRPYMAYLQIQSP-----A-GQSRCGGFLVREDFVLTAAHCWGS-------NINVTLGAHNIQRRENTQQ   67 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEESTT-----T-TSCEEEEEEEETTEEEECGGGCCS-------SEEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEEECC-----C-CCeEEEEEEeeCCEEEEhHHhCCC-------CCEEEEeecccCCCCCccE
Confidence            78999999999999999976432     1 248999999999999999999964       47899999987653 3568


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+. .+..+..|+++.
T Consensus        68 ~~~v~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~-~~~~~~~l~~~~  143 (224)
T 1cgh_A           68 HITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQE---GLRPGTLCTVAGWGRVS-MRRGTDTLREVQ  143 (224)
T ss_dssp             EEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCBTTBCCCBCCCTTC---CCCTTCEEEEEESCCSS-SSCCCSBCEEEE
T ss_pred             EEEEEEEEcCCCCCCCCCcCCEEEEEECCCCcCCCceEeeECCCCCC---CCCCCCEEEEEECCcCC-CCCCCCcceEEE
Confidence            89999999999999988899999999999999999999999997653   34578889999999987 344678899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.++|+..+..   ...+.||||+...++.++|+|||||||++..    +|+||+|||. |. .+.|++||||+.|
T Consensus       144 ~~i~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~-~~-~~~p~vyt~V~~~  214 (224)
T 1cgh_A          144 LRVQRDRQCLRIFGS---YDPRRQICVGDRRERKAAFKGDSGGPLLCNN----VAHGIVSYGK-SS-GVPPEVFTRVSSF  214 (224)
T ss_dssp             EEBCCHHHHHHHCTT---CCTTTEEEECCTTSCCBCCTTCTTCEEEETT----EEEEEEEECC-TT-CCSCEEEEEGGGG
T ss_pred             EEeeCHHHHHHHhCc---CCCcceEeeccCCCCCeEeeCCCccceEEcc----EEEEEEEEEC-CC-CCCCeEEEEHHHh
Confidence            999999999988742   3456699999766578999999999999842    8999999998 32 3569999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       215 ~~WI~~~~~  223 (224)
T 1cgh_A          215 LPWIRTTMR  223 (224)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999999874

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=100.00  E-value=7.8e-54  Score=377.42  Aligned_cols=226  Identities=31%  Similarity=0.564  Sum_probs=193.9

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|.+..         .++|+||||+++||||||||+...   ....+.|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---------~~~CgGtLIs~~~VLTAAHC~~~~---~~~~~~v~~G~~~~~~~~~~~~   68 (228)
T 2xw9_A            1 ILGGREAEAHARPYMASVQLNG---------AHLCGGVLVAEQWVLSAAHCLEDA---ADGKVQVLLGAHSLSQPEPSKR   68 (228)
T ss_dssp             CBCC-CCCTTSCTTEEEEEETT---------EEEEEEEEEETTEEEECGGGGSSC---TTCCEEEEESCSBSSSCCTTCE
T ss_pred             CCCCeECCCCCCCcEEEEEECC---------CeEEEEEEEeCCEEEEcHHhCCCC---CCCceEEEEcccccCCCCCcce
Confidence            6899999999999999997532         489999999999999999999752   22467899999987654 3467


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|+++.
T Consensus        69 ~~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~---~~~~g~~~~v~GwG~~~~~~~~~~~l~~~~  145 (228)
T 2xw9_A           69 LYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDR---DVAPGTLCDVAGWGIVNHAGRRPDSLQHVL  145 (228)
T ss_dssp             EEEEEEEEECTTCCTTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCC---CCCTTC-CEEEESSCCSTTCCCCSBCEEEE
T ss_pred             EEEEEEEEeCCCCCCCCCCCcEEEEEeCCCcccCCCeeecccCCccc---CCCCCCEEEEEEecccCCCCCCCchheEEE
Confidence            89999999999999988899999999999999999999999997543   345788899999999877666788999999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC-CCCCCCCCcEEEeCcc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTN  345 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~-~C~~~~~p~vyt~V~~  345 (355)
                      +++++.++|+..+... ..+.+.||||+.  .+.++|+|||||||++..    +|+||+|||. .|+..+.|++||||+.
T Consensus       146 ~~~~~~~~C~~~~~~~-~~~~~~~~Ca~~--~~~~~C~GDsGgPL~~~~----~l~Gi~s~g~~~C~~~~~p~vyt~V~~  218 (228)
T 2xw9_A          146 LPVLDRATCNRRTHHD-GAITERLMCAES--NRRDSCKGDAGGPLVCGG----VLEGVVTSGSRVCGNRKKPGIYTRVAS  218 (228)
T ss_dssp             CCEECHHHHTSTTTTT-TCCCTTEEEECC--SSCBCCTTCTTCEEEETT----EEEEEECCSCCCSSCTTSCEEEEEGGG
T ss_pred             EEEcChhHhcCccccC-CcccCCEEecCC--CCCccCCCCCcccEEECC----EEEEEEeecCCcCCCCCCCcEEEEHHH
Confidence            9999999999876532 257899999986  368999999999999842    8999999998 6988788999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++|+
T Consensus       219 ~~~WI~~~i~  228 (228)
T 2xw9_A          219 YAAWIDSVLA  228 (228)
T ss_dssp             GHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999985

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=6.2e-54  Score=377.31  Aligned_cols=219  Identities=32%  Similarity=0.650  Sum_probs=188.7

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|+..         ..++|+||||+++||||||||+.       ....|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~---------~~~~CgGsLI~~~~VLTAAHC~~-------~~~~v~~G~~~~~~~~~~~~   64 (225)
T 1npm_A            1 ILEGRECIPHSQPWQAALFQG---------ERLICGGVLVGDRWVLTAAHCKK-------QKYSVRLGDHSLQSRDQPEQ   64 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEET---------TEEEEEEEEEETTEEEECGGGCC-------SSCEEEESCSBTTC--CCCE
T ss_pred             CCCCEECCCCCcCcEEEEeeC---------CceEEEEEEECCCEEEEhHHcCC-------CCceEEEeeeEcCCCCCCcE
Confidence            789999999999999999642         24899999999999999999985       246799999887643 4568


Q ss_pred             EEEEeeeEeCCCC-CC--CCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCC-CCCCCCccc
Q psy2626         187 SIEIERPIIHEQY-TS--ARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTV-FRGPLSPKL  262 (355)
Q Consensus       187 ~~~v~~i~~hp~y-~~--~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~-~~~~~~~~l  262 (355)
                      .+.|+++++||+| +.  ....||||||||++|+.|+++++|||||...     ...+..++++|||.+. .....+..|
T Consensus        65 ~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~~L  139 (225)
T 1npm_A           65 EIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLC-----PKVGQKCIISGWGTVTSPQENFPNTL  139 (225)
T ss_dssp             EECEEEEEECTTCCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSC-----CCTTCEEEEEESSCSSSSSCCCCSBC
T ss_pred             EEEEEEEEECCCCCCCCccCccccEEEEeeCCcccCCCceeceECCCCC-----CCCCCEEEEEeCCcccCCCCCCCccc
Confidence            8999999999999 55  5677999999999999999999999999654     2468889999999874 344467889


Q ss_pred             eEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeC-CCCCCCCCCcEEE
Q psy2626         263 RHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYT  341 (355)
Q Consensus       263 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g-~~C~~~~~p~vyt  341 (355)
                      +++.+++++.+.|+..+..   .+.+.||||+... +.++|+|||||||++.  +  +|+||+||| ..|+..+.|+|||
T Consensus       140 ~~~~~~~~~~~~C~~~~~~---~~~~~~~Ca~~~~-~~~~C~GDSGgPL~~~--~--~l~GI~S~g~~~C~~~~~p~vyt  211 (225)
T 1npm_A          140 NCAEVKIYSQNKCERAYPG---KITEGMVCAGSSN-GADTCQGDSGGPLVCD--G--MLQGITSWGSDPCGKPEKPGVYT  211 (225)
T ss_dssp             EEEEEEECCHHHHHHHSTT---TCCTTEEEEECTT-CCBCCTTCTTCEEEET--T--EEEEEEEECCSSSCBTTBCEEEE
T ss_pred             eEeEEeeecHHHhhHHhCC---CCCCCEEeecCCC-CCeecCCCCCchheEC--C--EEEEEEEeCCCCCCCCCCCeEEE
Confidence            9999999999999988753   5789999998755 7899999999999984  2  699999999 5699878899999


Q ss_pred             eCcccHHHHHhHhC
Q psy2626         342 RVTNYIQWIADNIS  355 (355)
Q Consensus       342 ~V~~y~~WI~~~i~  355 (355)
                      ||+.|++||+++|+
T Consensus       212 ~V~~y~~WI~~~~~  225 (225)
T 1npm_A          212 KICRYTTWIKKTMD  225 (225)
T ss_dssp             EHHHHHHHHHHHHC
T ss_pred             EHHHHHHHHHHHhC
Confidence            99999999999985

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=2.7e-54  Score=383.75  Aligned_cols=230  Identities=30%  Similarity=0.542  Sum_probs=189.9

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCC--CCcCceEEEeccccccCCCCc
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTT--GEYEPYIVHVGSIDLEDTSSG  185 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~--~~~~~~~v~~G~~~~~~~~~~  185 (355)
                      |+||++|.+++|||||+|.+           .+.|+||||+++||||||||+.....  .....+.|++|.++.......
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-----------~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~~~   69 (242)
T 2qy0_B            1 IIGGQKAKMGNFPWQVFTNI-----------HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKL   69 (242)
T ss_dssp             CBSCEECCTTSSTTEEEEES-----------SSEEEEEEETTTEEEECHHHHSCSSCCC----CCEEEESCSBHHHHHHH
T ss_pred             CCCCEECCCCCCCcEEEEcc-----------CCCEEEEEEeCCEEEEcHHhccccccccCCCceEEEEEeeccccccccc
Confidence            78999999999999999953           24799999999999999999974211  123457799998876432223


Q ss_pred             EEEEEeeeEeCCCCCCC---CCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccc
Q psy2626         186 VSIEIERPIIHEQYTSA---RKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKL  262 (355)
Q Consensus       186 ~~~~v~~i~~hp~y~~~---~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l  262 (355)
                      +.+.|+++++||+|+..   ...||||||||++|+.|+++++|||||....   ....+..++++|||.+...  .+..|
T Consensus        70 ~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~--~~~~L  144 (242)
T 2qy0_B           70 GNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT---FYDLGLMGYVSGFGVMEEK--IAHDL  144 (242)
T ss_dssp             CCCCEEEEEECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGG---GGCTTCEEEEEECCCCSSS--CCSBC
T ss_pred             cceeEEEEEECCCCccCcCCCCCCcEEEEEECCCCcCCCCcceeecCCCcc---ccCCCCeEEEEeeccCCCc--CCccc
Confidence            45689999999999865   6679999999999999999999999996543   2356788999999988653  57789


Q ss_pred             eEEEEeeeChhHHHhhhhcC--CCCCCCCeEEecccCCCCCCCcCCCCCcceee--eCCeEEEEEEEEeCCCCCCCCCCc
Q psy2626         263 RHVQISVVDNPKCRQIFSNY--GATINENILCAGVLSGGKDSCGGDSGGPLMYP--LDTKYYIIGVVSYGKKCAEVGFPG  338 (355)
Q Consensus       263 ~~~~~~~~~~~~C~~~~~~~--~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~--~~~~~~lvGI~S~g~~C~~~~~p~  338 (355)
                      +++.+++++.+.|+..+...  ...+.++||||+....+.++|+|||||||++.  .+++|+|+||+|||..|+.  .|+
T Consensus       145 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~~~l~Gi~S~g~~C~~--~~~  222 (242)
T 2qy0_B          145 RFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYG  222 (242)
T ss_dssp             EEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSS--SCE
T ss_pred             eEEEEEEeCHHHHHHHhccccccccCCCCEEeccCCCCCCccccCCCCCcEEEEECCCCeEEEEEEEEECCCcCC--CCc
Confidence            99999999999999877532  13478899999976557899999999999995  3578999999999999985  389


Q ss_pred             EEEeCcccHHHHHhHhC
Q psy2626         339 VYTRVTNYIQWIADNIS  355 (355)
Q Consensus       339 vyt~V~~y~~WI~~~i~  355 (355)
                      +||||+.|++||+++|+
T Consensus       223 vyt~V~~y~~WI~~~~~  239 (242)
T 2qy0_B          223 FYTKVLNYVDWIKKEME  239 (242)
T ss_dssp             EEEEGGGGHHHHHHHTT
T ss_pred             EEEEHHHHHHHHHHHhh
Confidence            99999999999999885

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=100.00  E-value=1.7e-54  Score=432.29  Aligned_cols=244  Identities=34%  Similarity=0.692  Sum_probs=194.1

Q ss_pred             CCCCCCcCCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEec
Q psy2626          96 ECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVG  175 (355)
Q Consensus        96 ~CG~~~~~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G  175 (355)
                      .||..   ...||+||.+|.+++|||||+|.+...      ...++||||||+++||||||||+...  .....+.|++|
T Consensus       379 ~Cg~~---~~~rIvgG~~a~~~~~Pw~v~L~~~~~------~~~~~CgGsLIs~~~VLTAAHC~~~~--~~~~~~~V~~G  447 (625)
T 2f83_A          379 ECTTK---IKPRIVGGTASVRGEWPWQVTLHTTSP------TQRHLCGGSIIGNQWILTAAHCFYGV--ESPKILRVYSG  447 (625)
T ss_dssp             SSCSC---CCSCCCSSSSCCTTSSTTEEEEEECSS------SSEEEEEEEECSSSEEEECGGGGSSC--CCGGGEEEEES
T ss_pred             ccCCC---CCCceECCEECCCCCCCeEEEEEEecC------CCcEEEEEEEECCCEEEEcHHhCCCC--CCCceEEEEEE
Confidence            79986   578999999999999999999976431      23689999999999999999999752  22346789999


Q ss_pred             cccccCC-CCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCC
Q psy2626         176 SIDLEDT-SSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVF  254 (355)
Q Consensus       176 ~~~~~~~-~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~  254 (355)
                      .++.... ...+.+.|+++++||+|+.....||||||||++|+.|+++|+|||||....   ....+..++++|||.+..
T Consensus       448 ~~~~~~~~~~~~~~~V~~ii~Hp~y~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~---~~~~~~~~~v~GWG~~~~  524 (625)
T 2f83_A          448 ILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGD---RNVIYTDCWVTGWGYRKL  524 (625)
T ss_dssp             CSBGGGCCSSCCCEEEEEEEECTTCCBTTTBCCCEEEEESSCCCCBTTBCCCBCCCGGG---TTCCCCCEEECBCC----
T ss_pred             eccCCCCCCCceEEeEEEEEECCccCcCCccccEEEEEECCcccCCCceeeeEcCCccC---CccCCCEEEEEEecCCCC
Confidence            9887543 344568999999999999988889999999999999999999999997543   234577899999999876


Q ss_pred             CCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCC
Q psy2626         255 RGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  334 (355)
Q Consensus       255 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~  334 (355)
                      .+..+..|+++.++++++++|+..|..  ..+.+.||||+...++.++|+|||||||++..+++|+|+||+|||.+|+..
T Consensus       525 ~~~~s~~L~~~~v~i~~~~~C~~~~~~--~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~lvGIvS~G~~C~~~  602 (625)
T 2f83_A          525 RDKIQNTLQKAKIPLVTNEECQKRYRG--HKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQR  602 (625)
T ss_dssp             --CCCSBCBCCEECCCCHHHHHTTCTT--SCCCTTBCCC----------CCCTTCEEEEEETTEEEEEEEEEECCC----
T ss_pred             CCcCCcccEEEEEEEcCHHHHHHHhcc--CCCCCCeEEeecCCCCCcCCCCCcccceEEEECCeEEEEEEEEeCCCCCCC
Confidence            666788999999999999999987753  357899999987666789999999999999988999999999999999988


Q ss_pred             CCCcEEEeCcccHHHHHhHhC
Q psy2626         335 GFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       335 ~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      +.|+|||||+.|++||+++|+
T Consensus       603 ~~P~vyT~V~~y~~WI~~~~~  623 (625)
T 2f83_A          603 ERPGVYTNVVEYVDWILEKTQ  623 (625)
T ss_dssp             CCCCEEEEGGGGHHHHHHTC-
T ss_pred             CCCeEEEEHHHHHHHHHHHHh
Confidence            899999999999999999874

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=100.00  E-value=1.7e-54  Score=384.62  Aligned_cols=230  Identities=33%  Similarity=0.641  Sum_probs=187.6

Q ss_pred             cCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCC-Cc--E
Q psy2626         110 GGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTS-SG--V  186 (355)
Q Consensus       110 gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~-~~--~  186 (355)
                      ||.+|.+++|||||+|.+..     ++...++|+||||+++||||||||+...     ..+.|++|.++..... ..  +
T Consensus         1 gG~~a~~~~~Pw~v~l~~~~-----~~~~~~~CgGtLIs~~~VLTAAhC~~~~-----~~~~v~~G~~~~~~~~~~~~~~   70 (240)
T 1fon_A            1 NGEDAVPYSWSWQVSLQYEK-----DGAFHHTCGGSLIAPDWVVTAGHCISTS-----RTYQVVLGEYDRSVLEGSEQVI   70 (240)
T ss_dssp             --------CEEEEEEEEEEE-----TTEEEEEECCEEEETTEEEECGGGCCTT-----SCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCccCCcCCcccEEEEEEec-----CCcEeeEEEEEEeeCCEEEECHHHCCCC-----CceEEEeeeeeccccCCCceeE
Confidence            68999999999999998742     2223589999999999999999999651     4578999998875432 22  6


Q ss_pred             EEEEeeeEeCCCCCCCCCC--CCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceE
Q psy2626         187 SIEIERPIIHEQYTSARKL--NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRH  264 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~--~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~  264 (355)
                      .+.|+++++||+|+.....  ||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|++
T Consensus        71 ~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~L~~  147 (240)
T 1fon_A           71 PINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGD---ILPNEAPCYISGWGRLYTGGPLPDKLQQ  147 (240)
T ss_dssp             EECTTSEEECTTCCTTCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTC---CCCTTCCCEEEECTTCCCSSSCCSBCEE
T ss_pred             eeeeeEEEECCCCcCCCccCCCCEEEEEecCccccCCcccccCCCCccc---CCCCCCeEEEEEEeEcCCCCCCChhheE
Confidence            7889999999999988777  9999999999999999999999997653   3456788999999998766667889999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeee-CCeEEEEEEEEeCC--CCCCCCCCcEEE
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGK--KCAEVGFPGVYT  341 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-~~~~~lvGI~S~g~--~C~~~~~p~vyt  341 (355)
                      +.+++++.+.|+..+. ++..+.+.||||+. . +.++|+|||||||++.. +++|+|+||+|||.  .|+..+.|+|||
T Consensus       148 ~~~~~~~~~~C~~~~~-~~~~~~~~~~Ca~~-~-~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~~~C~~~~~p~vyt  224 (240)
T 1fon_A          148 ALLPTVDYEHCSQWDW-WGITVKKTMVCAGG-D-TRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFT  224 (240)
T ss_dssp             EECCEECHHHHTSTTT-TGGGCCTTEEEECC-S-SSCSTTSCTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEE
T ss_pred             EEEeeeCHHHhcccee-cCCccccceEeecC-C-CCcccCCCCCCeEEeEcCCCCEEEEEEEEEcCCCCCCCCCCCcEEE
Confidence            9999999999987642 12357899999985 3 38899999999999976 68999999999997  698878899999


Q ss_pred             eCcccHHHHHhHhC
Q psy2626         342 RVTNYIQWIADNIS  355 (355)
Q Consensus       342 ~V~~y~~WI~~~i~  355 (355)
                      ||+.|++||+++|+
T Consensus       225 ~V~~~~~WI~~~~~  238 (240)
T 1fon_A          225 RVSAFIDWIDETIA  238 (240)
T ss_dssp             EGGGSHHHHHHHHH
T ss_pred             EhHHHHHHHHHHHh
Confidence            99999999999873

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=100.00  E-value=2.9e-53  Score=376.68  Aligned_cols=224  Identities=29%  Similarity=0.581  Sum_probs=191.3

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC---CC
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT---SS  184 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~---~~  184 (355)
                      |+||.+|.. +|||||+|.+..         .++|+||||+++||||||||+...   ....+.|++|.++....   ..
T Consensus         1 IvgG~~a~~-~~Pw~v~l~~~~---------~~~CgGtLIs~~~VLTAAHC~~~~---~~~~~~v~~G~~~~~~~~~~~~   67 (240)
T 1si5_H            1 VVNGIPTRT-NIGWMVSLRYRN---------KHICGGSLIKESWVLTARQCFPSR---DLKDYEAWLGIHDVHGRGDEKC   67 (240)
T ss_dssp             CBSCEECSS-CCTTEEEEEESS---------SEEEEEEEEETTEEEEEGGGCSSS---CGGGEEEEESCSBSSCSTTTTT
T ss_pred             CCCCeeCCC-CCCeEEEEEeCC---------CeEEEEEEeeCCEEEEhHHhcCCC---CCccEEEEEeeeecCCCCCCCc
Confidence            789999999 999999997642         489999999999999999999752   23568899999887653   45


Q ss_pred             cEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceE
Q psy2626         185 GVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRH  264 (355)
Q Consensus       185 ~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~  264 (355)
                      .+.+.|++++.||.      .||||||||++|+.|+++++|||||....   ....+..++++|||.+.... .+..|++
T Consensus        68 ~~~~~v~~~~~~p~------~~DiALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~GwG~~~~~~-~~~~L~~  137 (240)
T 1si5_H           68 KQVLNVSQLVYGPE------GSDLVLMKLARPAVLDDFVSTIDLPNYGS---TIPEKTSCSVYGWGYTGLIN-YDGLLRV  137 (240)
T ss_dssp             CEEEEEEEEEECSS------TTCEEEEEESSCCCCSSSCCCCBCCCTTC---CCCTTCEEEEEESSCCCCSS-CCCBCEE
T ss_pred             ceEEEEEEEEcCCC------CCcEEEEEECCccccCCceeccCcCCcCC---CCCCCCEEEEEEeCCCCCCC-CCCeeEE
Confidence            67899999999997      48999999999999999999999997543   34567889999999987654 5778999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCc
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT  344 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~  344 (355)
                      +.+++++.+.|+..+.. ...+.+.||||+...++.++|.|||||||++..+++|+|+||+|||.+|+..+.|++||||+
T Consensus       138 ~~~~~~~~~~C~~~~~~-~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~  216 (240)
T 1si5_H          138 AHLYIMGNEKCSQHHRG-KVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVA  216 (240)
T ss_dssp             EEEEEECGGGTCC--------CCTTEEEEECSSSCCBCCTTCTTCEEEEECSSSEEEEEEECSCSCSSCTTCCEEEEEGG
T ss_pred             EEEeecCHHHhhhhhcC-CccCCCCEEeecCCCCCCEeccCCCCCcEEEEECCcEEEEEEEEECCCCCCCCCCcEEEEHH
Confidence            99999999999887643 12378999999976657899999999999999899999999999999999878899999999


Q ss_pred             ccHHHHHhHhC
Q psy2626         345 NYIQWIADNIS  355 (355)
Q Consensus       345 ~y~~WI~~~i~  355 (355)
                      .|++||+++|+
T Consensus       217 ~y~~WI~~~i~  227 (240)
T 1si5_H          217 YYAKWIHKIIL  227 (240)
T ss_dssp             GGHHHHHHHHS
T ss_pred             HHHHHHHHHHh
Confidence            99999999874

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=100.00  E-value=1.9e-53  Score=374.39  Aligned_cols=223  Identities=31%  Similarity=0.555  Sum_probs=190.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||+++.+++|||||+|.+...     ....++|+||||+++||||||||+..       ...|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-----~~~~~~CgGtLI~~~~VLTAAhC~~~-------~~~v~~G~~~~~~~~~~~~   68 (226)
T 4ag1_A            1 IIGGTECKPHSRPYMAYLEIVTS-----NGPSKFCGGFLIRRNFVLTAAHCAGR-------SITVTLGAHNITEEEDTWQ   68 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEEECS-----SSSCEEEEEEEEETTEEEECGGGCCS-------EEEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEEEcC-----CCcccEEEEEEEeCCEEEECcccCCC-------CeEEEeCCcccCCCCCcce
Confidence            78999999999999999987542     22358899999999999999999842       57899999887654 3457


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+......+..|+++.
T Consensus        69 ~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~  145 (226)
T 4ag1_A           69 KLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFN---FVPPGRMCRVAGWGRTGVLKPGSDTLQEVK  145 (226)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSSCCCCCC--------CCTTCEEEEEESSBSSTTSCBCSBCEEEE
T ss_pred             EEEEEEEEeCCCCCCCCCcCcEEEEEECCCCccCCceeccccCCccc---CCCCCCEEEEEECCCCCCCCCCCCEeEEEE
Confidence            89999999999999999999999999999999999999999997653   345788999999999877666788999999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.+.|+...    ....+.||||+....+.++|+|||||||++.    ++|+||+|||..|+..  |++||||+.|
T Consensus       146 ~~~~~~~~C~~~~----~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~----~~l~Gi~S~g~~c~~~--p~vyt~v~~~  215 (226)
T 4ag1_A          146 LRLMDPQACSHFR----DFDHNLQLCVGNPRKTKSAFKGDSGGPLLCA----GVAQGIVSYGRSDAKP--PAVFTRISHY  215 (226)
T ss_dssp             EEEECGGGGTTST----TCCTTTEEEESCTTSCCBCCTTCTTCEEEET----TEEEEEEEECBTTCCS--CEEEEEHHHH
T ss_pred             EEEcChHHccccc----CcCccceEeeccCCCCCcCccCCCCCceEEc----CEEEEEEEECCCCCCC--CCEEEEhHHH
Confidence            9999999998432    2357889999986667899999999999984    3899999999998764  9999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       216 ~~WI~~~i~  224 (226)
T 4ag1_A          216 RPWINQILQ  224 (226)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999874

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=3.3e-53  Score=372.17  Aligned_cols=219  Identities=34%  Similarity=0.679  Sum_probs=192.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||++|.+++|||||+|..          ..++|+||||+++||||||||+..       ...|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~----------~~~~C~GtLI~~~~VLTAAhC~~~-------~~~v~~g~~~~~~~~~~~~   63 (223)
T 4i8h_A            1 IVGGYTCGANTVPYQVSLNS----------GYHFCGGSLINSQWVVSAAHCYKS-------GIQVRLGEDNINVVEGNEQ   63 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEES----------SSEEEEEEECSSSEEEECGGGCCS-------SCEEEESCSSTTSCCSCCE
T ss_pred             CCCCEECCCCCCCeEEEecC----------CCcEEEEEEEcCCEEEecHHhCCC-------CcEEEEccccccccCCCcE
Confidence            78999999999999999952          147899999999999999999863       46799999887643 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC-CCCccceEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRHV  265 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~  265 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||...     ...+..++++|||.+.... ..+..|+++
T Consensus        64 ~~~v~~~~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~-----~~~~~~~~v~GwG~~~~~~~~~~~~l~~~  138 (223)
T 4i8h_A           64 FISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSC-----ASAGTQCLISGWGNTKSSGTSYPDVLKCL  138 (223)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSC-----CCTTCEEEEEESSCCCSSSCCCCSSCEEE
T ss_pred             EEEEeEEEECcCCCCCCCcCCEEEEEECCcCcCCCceeceECCCCC-----CCCCCEEEEEecccccCCCCCccccceEE
Confidence            8899999999999999889999999999999999999999999754     3578899999999987643 357789999


Q ss_pred             EEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcc
Q psy2626         266 QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN  345 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~  345 (355)
                      .+++++.+.|+..+..   .+.++||||+....+.++|.|||||||++..    +|+||+|||..|+..+.|++||||+.
T Consensus       139 ~~~~~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~Gi~S~g~~c~~~~~p~vyt~v~~  211 (223)
T 4i8h_A          139 KAPILSDSSCKSAYPG---QITSNMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCN  211 (223)
T ss_dssp             EEEBCCHHHHHHHSTT---TCCTTEEEESCTTSSCBCCTTCTTCEEEETT----EEEEEEEECSSSSCTTCCEEEEEGGG
T ss_pred             EeeecCHHHHHHhhCC---CCCCCeEeccCCCCCCccCCCCCCCcEEECC----EEEEEEEcCCCCCCCCCCeEEEEHHH
Confidence            9999999999998754   6889999998766678999999999999853    79999999999998889999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++|+
T Consensus       212 ~~~WI~~~i~  221 (223)
T 4i8h_A          212 YVSWIKQTIA  221 (223)
T ss_dssp             GHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999874

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=100.00  E-value=8.1e-54  Score=398.04  Aligned_cols=236  Identities=34%  Similarity=0.633  Sum_probs=187.4

Q ss_pred             CCCCCCcC--CCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEE
Q psy2626          96 ECGVNAFN--SSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVH  173 (355)
Q Consensus        96 ~CG~~~~~--~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~  173 (355)
                      .||.....  ...||+||.+|..++|||||+|.            ..+||||||+++||||||||+....     ...|+
T Consensus        69 ~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~------------~~~CgGsLIs~~~VLTAAHC~~~~~-----~~~v~  131 (333)
T 1elv_A           69 VCGVPREPFEEKQRIIGGSDADIKNFPWQVFFD------------NPWAGGALINEYWVLTAAHVVEGNR-----EPTMY  131 (333)
T ss_dssp             CCSCCSSCC-----CBTCEECCGGGSTTEEEEE------------TTEEEEEEEETTEEEECHHHHTTCS-----SCCEE
T ss_pred             CcCCCCCcccccceeecCcccCCCCcCeEEEec------------CCceeEEEecCCEEEehhheeCCCC-----CCeEE
Confidence            79986422  34799999999999999999992            1279999999999999999997521     23689


Q ss_pred             eccccccCCCCcEEEEE---eeeEeCCCCCC-------CCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCc
Q psy2626         174 VGSIDLEDTSSGVSIEI---ERPIIHEQYTS-------ARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKT  243 (355)
Q Consensus       174 ~G~~~~~~~~~~~~~~v---~~i~~hp~y~~-------~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~  243 (355)
                      +|.+++.. ...+.+.|   +++++||+|+.       ....||||||||++|+.|+++|+|||||..... .....+..
T Consensus       132 ~G~~~~~~-~~~~~~~v~~v~~i~~Hp~y~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~-~~~~~g~~  209 (333)
T 1elv_A          132 VGSTSVQT-SRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSD-YNLMDGDL  209 (333)
T ss_dssp             CSCSBCC--------CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGG-GCCCTTCE
T ss_pred             Eeeeeccc-CccceeeeeccceEEECCCCcccccccccCCCcceEEEEEeCCCCcCCCcccceecCCCccc-ccccCCcE
Confidence            99987732 23344555   99999999984       457799999999999999999999999965531 12346788


Q ss_pred             eEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcC------CCCCCCCeEEecccCCCCCCCcCCCCCcceeee--
Q psy2626         244 PFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY------GATINENILCAGVLSGGKDSCGGDSGGPLMYPL--  315 (355)
Q Consensus       244 ~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~------~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~--  315 (355)
                      ++++|||.+.... .+..|+++.+++++.+.|+..+...      ...++++||||+... +.++|+|||||||++..  
T Consensus       210 ~~v~GWG~t~~~~-~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cag~~~-~~~~C~GDSGGPL~~~~~~  287 (333)
T 1elv_A          210 GLISGWGRTEKRD-RAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEK-GMDSCKGDSGGAFAVQDPN  287 (333)
T ss_dssp             EEEEESCCCSSCS-SCSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECST-TCBCCTTCTTCEEEEECSS
T ss_pred             EEEEECcCcCCCC-cCceeEEEEEEEEcHHHhhhhhhcccccccccccCCCCeECccCCC-CCCcCcCcCCCceEEEECC
Confidence            9999999987643 6788999999999999999876432      135789999998765 78999999999999975  


Q ss_pred             CC-eEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         316 DT-KYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       316 ~~-~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      ++ +|+|+||+|||..|+.   |+|||||+.|++||+++|+
T Consensus       288 ~~~~~~l~GIvS~g~~C~~---~~vyt~V~~y~~WI~~~~~  325 (333)
T 1elv_A          288 DKTKFYAAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTMQ  325 (333)
T ss_dssp             CTTCEEEEEEEEECSSTTS---EEEEEEGGGGHHHHHHHHH
T ss_pred             CCcEEEEEEEEeeCCCCCC---CcEEeEHHHHHHHHHHHHh
Confidence            34 8999999999999984   8999999999999999873

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=2.4e-54  Score=383.61  Aligned_cols=222  Identities=30%  Similarity=0.620  Sum_probs=165.7

Q ss_pred             CceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CC
Q psy2626         106 KRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SS  184 (355)
Q Consensus       106 ~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~  184 (355)
                      .||+||.+|..++|||||+| +..        ..++|+||||+++||||||||+..       ...|++|.+++... ..
T Consensus         2 arIvgG~~a~~~~~Pw~v~l-~~~--------~~~~CgGsLIs~~~VLTAAHC~~~-------~~~v~~G~~~~~~~~~~   65 (240)
T 1sgf_A            2 APPVQSQVDCENSQPWHVAV-YRF--------NKYQCGGVLLDRNWVLTAAHCYND-------KYQVWLGKNNFLEDEPS   65 (240)
T ss_dssp             -----------CCCTTEEEE-ECT--------TSCCEEEEECSSSEEEECGGGCCS-------CCEEEECC----C-CTT
T ss_pred             CcccCCeECCCCCcCCEEEE-EeC--------CCeEEEEEEecCCEEEECHHhCCC-------CceEEeCCcccccCCCC
Confidence            58999999999999999999 421        147899999999999999999963       46799999887543 45


Q ss_pred             cEEEEEeeeEeCCCCCCC-----------CCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCC
Q psy2626         185 GVSIEIERPIIHEQYTSA-----------RKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTV  253 (355)
Q Consensus       185 ~~~~~v~~i~~hp~y~~~-----------~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~  253 (355)
                      .+.+.|+++++||+|+..           ...||||||||++|+.|+++++|||||...     ...+..++++|||.+.
T Consensus        66 ~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~-----~~~~~~~~v~GwG~~~  140 (240)
T 1sgf_A           66 DQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEE-----PKLGSTCLASGWGSTT  140 (240)
T ss_dssp             CEEEEEEEEEECTTSCGGGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSC-----CCTTCEEEEC------
T ss_pred             ceEEEEEEEEcCCCCcccccccccccccCCCCCceEEEEeCCcCcCCCcccccCCCCCC-----CCCCCEEEEEecCCCC
Confidence            678899999999999865           677999999999999999999999999754     2467889999999886


Q ss_pred             CC-CCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeC-CCC
Q psy2626         254 FR-GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKC  331 (355)
Q Consensus       254 ~~-~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g-~~C  331 (355)
                      .. ...+..|+++.+++++.++|+..+.   ..+.+.||||+...++.++|+|||||||++.  +  +|+||+||| ..|
T Consensus       141 ~~~~~~~~~L~~~~~~~~~~~~C~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~--~--~l~GI~S~g~~~C  213 (240)
T 1sgf_A          141 PIKFKYPDDLQCVNLKLLPNEDCDKAHE---MKVTDAMLCAGEMDGGSYTCEHDSGGPLICD--G--ILQGITSWGPEPC  213 (240)
T ss_dssp             -C---------CEEEEEECTHHHHTTCS---SBCCTTEEEEEECSSSEEECCCCTTCEEEET--T--EEEEEECCCCSSC
T ss_pred             CCCCCCCccccEEeeeEeCHHHhhhhhC---CCcCCCeEeEccCCCCCCCCCCCCcCcEEEc--c--EEEEEEEECCCCC
Confidence            53 3357789999999999999998764   3578999999976657889999999999983  2  799999999 569


Q ss_pred             CCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         332 AEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       332 ~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      +..+.|+|||||+.|++||+++|+
T Consensus       214 ~~~~~p~vyt~V~~~~~WI~~~~~  237 (240)
T 1sgf_A          214 GEPTEPSVYTKLIKFSSWIRETMA  237 (240)
T ss_dssp             CCSSCCEEEEESGGGHHHHHHHHH
T ss_pred             CCCCCCeEEEeHHHHHHHHHHHHh
Confidence            987889999999999999999873

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=2.3e-53  Score=376.12  Aligned_cols=218  Identities=34%  Similarity=0.638  Sum_probs=189.4

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|..++|||||+|..           .++|+||||+++||||||||+.       ....|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-----------~~~CgGsLIs~~~VLTAAHC~~-------~~~~v~~G~~~~~~~~~~~~   62 (235)
T 1ton_A            1 IVGGYKCEKNSQPWQVAVIN-----------EYLCGGVLIDPSWVITAAHCYS-------NNYQVLLGRNNLFKDEPFAQ   62 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEES-----------SSEEEEEEEETTEEEECGGGCC-------SCCEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCcCcEEEEcc-----------CCeEEEEEecCCEEEEcHHhCC-------CCcEEEeCcccccCCCCcce
Confidence            78999999999999999952           1789999999999999999994       246799999987643 3467


Q ss_pred             EEEEeeeEeCCCCCC-----------CCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCC
Q psy2626         187 SIEIERPIIHEQYTS-----------ARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFR  255 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~-----------~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~  255 (355)
                      .+.|+++++||+|+.           ....||||||||++|+.|+++++|||||...     ...+..++++|||.+...
T Consensus        63 ~~~v~~i~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~-----~~~~~~~~v~GwG~~~~~  137 (235)
T 1ton_A           63 RRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKE-----PKVGSTCLASGWGSTNPS  137 (235)
T ss_dssp             EECEEEEEECTTCCCC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSC-----CCTTCEEEEEESSCSSSS
T ss_pred             EEEEEEEEeCCCCcccccccccccccCCCcCCEEEEEcCCccccCCcceeeeCCCCC-----CCCCCEEEEEecCCCCCC
Confidence            889999999999987           6677999999999999999999999999754     346789999999998654


Q ss_pred             -CCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeC-CCCCC
Q psy2626         256 -GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAE  333 (355)
Q Consensus       256 -~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g-~~C~~  333 (355)
                       ...+..|+++.+++++.++|+..|..   .+.+.||||+...++.++|+|||||||++.  +  +|+||+||| ..|+.
T Consensus       138 ~~~~~~~L~~~~~~~~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~--~--~l~Gi~S~g~~~C~~  210 (235)
T 1ton_A          138 EMVVSHDLQCVNIHLLSNEKCIETYKD---NVTDVMLCAGEMEGGKDTCAGDSGGPLICD--G--VLQGITSGGATPCAK  210 (235)
T ss_dssp             SCCCCSBCEEEEEEEECGGGCGGGGST---TGGGGEEEEECTTCSCBCCTTCTTCEEEET--T--EEEEEECCCCSSCSC
T ss_pred             CCccCccceEEEEEEeCHHHHHHHhcC---cCCCCeEeeccCCCCCcCCCCCCccccEEC--C--EEEEEEeeCCCCCCC
Confidence             34678899999999999999987753   578899999976557899999999999984  2  799999999 56998


Q ss_pred             CCCCcEEEeCcccHHHHHhHhC
Q psy2626         334 VGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       334 ~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      .+.|++||||+.|++||+++|+
T Consensus       211 ~~~p~vyt~V~~~~~WI~~~~~  232 (235)
T 1ton_A          211 PKTPAIYAKLIKFTSWIKKVMK  232 (235)
T ss_dssp             TTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCeEEEEHHHHHHHHHHHHc
Confidence            8889999999999999999873

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=100.00  E-value=4.1e-53  Score=374.25  Aligned_cols=225  Identities=29%  Similarity=0.463  Sum_probs=196.7

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||++|..++|||||+|.+..         .++|+||||+++||||||||+..   .....+.|++|.++...  ..+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---------~~~CgGtLIs~~~VLTAAHC~~~---~~~~~~~v~~G~~~~~~--~~~~   66 (235)
T 3h7t_A            1 IIGGKKSDITKEPWAVGVLVDE---------KPFCGGSILTANFVITAAQCVDG---TKPSDISIHYGSSYRTT--KGTS   66 (235)
T ss_dssp             CBTCEECCTTTSTTEEEEEETT---------SCCEEEEESSSSEEEECHHHHTT---CCGGGEEEEESCSBSSS--SSEE
T ss_pred             CCCCEECCCCCCCcEEEEecCC---------CceEeEEEeeCCEEEECHHHCCC---CCCCeeEEEcCcccccc--CCce
Confidence            7899999999999999997642         47899999999999999999974   23457889999988763  3488


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCC-CccccccCCCCCccccccCCCceEEEEeccCCCCC-CCCccceEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSD-LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRHV  265 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~-~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~  265 (355)
                      +.|+++++| +|+.....||||||+|++|+.|++ .++|||||....   ....+..++++|||.+...+ ..+..|+++
T Consensus        67 ~~v~~i~~h-~y~~~~~~~DiAll~L~~~v~~~~~~v~pi~Lp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~  142 (235)
T 3h7t_A           67 VMAKKIYIV-RYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLY---DPEPDTSVLVSGWGSTNFKSLEYSGDLMEA  142 (235)
T ss_dssp             EEEEEEEEC-SCBTTTTBTCCEEEEESSCCCCCSSSCCCCBCCCTTC---CCCTTCEEEEEECCCSSTTCCCCCSBCEEE
T ss_pred             eeeeeEEee-ecCCCCCCCCeEEEEeccccccCCccccceecCcccc---CCCCCCeEEEEecCCCCCCCCchhHHHhhC
Confidence            999999999 999988999999999999999999 999999997653   34678899999999987665 578899999


Q ss_pred             EEeeeChhHHHhhhhcCC--CCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeC
Q psy2626         266 QISVVDNPKCRQIFSNYG--ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV  343 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~--~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V  343 (355)
                      .+++++.+.|+..+....  ..+.++||||+...++.++|+|||||||++.  +  .|+||+|||..|+. +.|++||||
T Consensus       143 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~--~--~l~Gi~S~g~~C~~-~~p~vyt~v  217 (235)
T 3h7t_A          143 NFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQN--G--TLVGVASYISSMPS-EFPSVFLRV  217 (235)
T ss_dssp             EEEEECHHHHHHHHHTTTCGGGCSTTEEEECBTTTTBBCCTTCTTCEEEET--T--EEEEEECCCTTCCT-TSCEEEEEG
T ss_pred             CCceeCHHHHHHHhhhcccCccccCCeEecCCCCCCCccccCCCCCceeeC--C--eEEEEEEecCCCCC-CCCceEEEH
Confidence            999999999999887531  2478999999987768899999999999983  3  39999999999987 789999999


Q ss_pred             cccHHHHHhHhC
Q psy2626         344 TNYIQWIADNIS  355 (355)
Q Consensus       344 ~~y~~WI~~~i~  355 (355)
                      +.|++||+++|+
T Consensus       218 ~~~~~WI~~~i~  229 (235)
T 3h7t_A          218 GYYVLDIKDIIS  229 (235)
T ss_dssp             GGGHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999999985

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-53  Score=388.13  Aligned_cols=230  Identities=19%  Similarity=0.343  Sum_probs=182.8

Q ss_pred             CCCCCCCcCCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEe
Q psy2626          95 NECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHV  174 (355)
Q Consensus        95 ~~CG~~~~~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~  174 (355)
                      ..||+...    +   |.++..++|||||+|.+..        ..++|+||||+++||||||||+...     ..+.|++
T Consensus        47 c~CG~~~~----~---g~~a~~~~~Pw~v~l~~~~--------~~~~CgGtLI~~~~VLTAAHC~~~~-----~~~~V~~  106 (283)
T 3f1s_B           47 CACGVLTS----E---KRAPDLQDLPWQVKLTNSE--------GKDFCGGVIIRENFVLTTAKCSLLH-----RNITVKT  106 (283)
T ss_dssp             TCTTCCCC---------------CCTTEEEEECTT--------SCEEEEEEEEETTEEEECHHHHTSC-----SSCEEEE
T ss_pred             cccCcccc----C---CccccccccCCEEEEEecC--------CCeeeccEEecCCEEEEcHHhcCcc-----CceEEEE
Confidence            37998642    1   8999999999999997532        2579999999999999999999641     2578999


Q ss_pred             ccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCC
Q psy2626         175 GSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVF  254 (355)
Q Consensus       175 G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~  254 (355)
                      |.++..  ...+.+.|+++++||+|+..+..||||||||++|+.|+++|+|||||...........+..++++|||.  .
T Consensus       107 G~~~~~--~~~~~~~v~~i~~Hp~y~~~~~~nDIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~--~  182 (283)
T 3f1s_B          107 YFNRTS--QDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--N  182 (283)
T ss_dssp             CTTC-C--CCCEEEEEEEEEECTTCBTTTTBTCCEEEEESSCCCTTTTCCCCBCCCHHHHHHTTTTTSCEEEEECBC--C
T ss_pred             eeeeCC--CCcEEEEeEEEEECCCCCCCCCCCCEEEEEeCCcccCCCCEEeEECCCCccccccccCCCEEEEEECCC--C
Confidence            987764  367889999999999999988899999999999999999999999997542112345688899999998  3


Q ss_pred             CCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCC
Q psy2626         255 RGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV  334 (355)
Q Consensus       255 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~  334 (355)
                      .+..+..|+++.+++++.+.|+..+..   .++++||||+... +  .|.|||||||++..+++|+|+||+|||. |+..
T Consensus       183 ~~~~~~~L~~~~v~~~~~~~C~~~~~~---~~~~~~~Ca~~~~-~--~~~gDSGgPlv~~~~~~~~l~GIvS~g~-c~~~  255 (283)
T 3f1s_B          183 GTDLGNSLTTRPVTLVEGEECGQVLNV---TVTTRTYCERSSV-A--AMHWMDGSVVTREHRGSWFLTGVLGSQP-VGGQ  255 (283)
T ss_dssp             -------CEEEEEEEECHHHHHHHHTS---CCCTTEEEEECSS-C--GGGBCTTCEEEEECSSCEEEEEEECCCS-GGGC
T ss_pred             CCCCCceeeEEEEeEeCHHHHhhhhcC---CCCCCeEcccCCC-C--CCCCCCCCcEEEEECCEEEEEEEEEeCC-CCCC
Confidence            344678899999999999999998753   6889999998643 3  4577999999999889999999999985 7777


Q ss_pred             CCCcEEEeCcccHHHHHhHhC
Q psy2626         335 GFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       335 ~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      +.|+|||||+.|++||+++|+
T Consensus       256 ~~p~vyt~V~~y~~WI~~~~~  276 (283)
T 3f1s_B          256 AHMVLVTKVSRYSLWFKQIMN  276 (283)
T ss_dssp             SSEEEEEEGGGGHHHHHHHHT
T ss_pred             CcceEEEEhHHhHHHHHHHhh
Confidence            889999999999999999985

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=100.00  E-value=7e-54  Score=379.92  Aligned_cols=220  Identities=29%  Similarity=0.555  Sum_probs=190.1

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|++..         .++|+||||+++||||||||+.       ....|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---------~~~CgGsLIs~~~VLTAAHC~~-------~~~~v~~G~~~~~~~~~~~~   64 (237)
T 1gvz_A            1 IIGGWECEKHSKPWQVAVYHQG---------HFQCGGVLVHPQWVLTAAHCMS-------DDYQIWLGRHNLSKDEDTAQ   64 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT---------EEEEEEEEEETTEEEECGGGCC-------SSCEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCeEEEEeeCC---------ceEEEeEEeeCCEEEEcHHhCC-------CCCeEEEeecccccCCCCce
Confidence            7899999999999999996421         4789999999999999999985       246799999987654 3468


Q ss_pred             EEEEeeeEeCCCCCCCCC-----------CCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCC-C
Q psy2626         187 SIEIERPIIHEQYTSARK-----------LNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTV-F  254 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~-----------~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~-~  254 (355)
                      .+.|+++++||+|+....           .||||||||++|+.|+++++|||||...     ...+..++++|||.+. .
T Consensus        65 ~~~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~-----~~~~~~~~v~GwG~~~~~  139 (237)
T 1gvz_A           65 FHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQE-----PKLGSTCYTSGWGLISTF  139 (237)
T ss_dssp             EECEEEEEECTTSCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSC-----CCTTCEEEEEEEECSCTT
T ss_pred             EEEeeeEecCCccCcccccccccccccccCCceEEEEeCCCcccCCcEeeeECCCCC-----CCCCCEEEEECCCcccCC
Confidence            899999999999987665           7999999999999999999999999754     2467889999999874 3


Q ss_pred             CCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC-CCCC
Q psy2626         255 RGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAE  333 (355)
Q Consensus       255 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~-~C~~  333 (355)
                      .+..+..|+++.+++++.++|+..+..   .+.+.||||+...++.++|+|||||||++.  +  +|+||+|||. .|+.
T Consensus       140 ~~~~~~~L~~~~~~~~~~~~C~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~--~--~l~GI~S~g~~~C~~  212 (237)
T 1gvz_A          140 TNRGSGTLQCVELRLQSNEKCARAYPE---KMTEFVLCATHRDDSGSICLGDSGGALICD--G--VFQGITSWGYSECAD  212 (237)
T ss_dssp             TCSEEEEEEEEEEEEECGGGGCSSCGG---GCCTTEEEEECSSTTCEECGGGTTCEEEET--T--EEEEEECCCSSSCEE
T ss_pred             CCCCCCccEEEEEeEeChhHhhhhhhh---cCCCceEEEeeCCCCCccCCCCccCcEeeC--C--EEEEEEEeCCCCCCC
Confidence            344577899999999999999987753   578999999976657889999999999984  2  7999999998 7987


Q ss_pred             CCCCcEEEeCcccHHHHHhHhC
Q psy2626         334 VGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       334 ~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      .+.|+|||||+.|++||+++|+
T Consensus       213 ~~~p~vyt~V~~~~~WI~~~~~  234 (237)
T 1gvz_A          213 FNDNFVFTKVMPHKKWIKETIE  234 (237)
T ss_dssp             TTTSCCEEESGGGHHHHHHHHH
T ss_pred             CCCCcEEEEHHHHHHHHHHHHh
Confidence            7889999999999999999873

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=3.6e-53  Score=372.11  Aligned_cols=223  Identities=34%  Similarity=0.596  Sum_probs=193.6

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.++.+++|||||+|.+...     ....++|+||||+++||||||||+..       ...|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-----~~~~~~CgGtLI~~~~VLTAAhC~~~-------~~~v~~g~~~~~~~~~~~~   68 (224)
T 3rp2_A            1 IIGGVESIPHSRPYMAHLDIVTE-----KGLRVICGGFLISRQFVLTAAHCKGR-------EITVILGAHDVRKRESTQQ   68 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEECT-----TSCEEEEEEEESSSSEEEECGGGCCS-------EEEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEEecC-----CCcEEEEEeEEeeCCEEEEchhcCCC-------CcEEEEeccccCcCCCCcE
Confidence            78999999999999999987542     22368999999999999999999842       57899999887653 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+......+..|+++.
T Consensus        69 ~~~v~~~~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  145 (224)
T 3rp2_A           69 KIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSD---FIHPGAMCWAAGWGKTGVRDPTSYTLREVE  145 (224)
T ss_dssp             EEEEEEEEECTTCCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTC---CCCTTCEEEEEESSEEETTEEECSBCEEEE
T ss_pred             EEEEEEEEECCCccCCCCCccEEEEEcCCCcccCCcccceecCCccc---CCCCCCEEEEEeCCCCCCCCCCCceeeEee
Confidence            89999999999999998899999999999999999999999997654   345788999999999876655678899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.+.|+.. .   ....+.+||++......++|.|||||||++..    +|+||+|||..|+..  |++||||+.|
T Consensus       146 ~~~~~~~~C~~~-~---~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~Gi~S~g~~c~~~--p~vyt~v~~y  215 (224)
T 3rp2_A          146 LRIMDEKACVDY-R---YYEYKFQVCVGSPTTLRAAFMGDSGGPLLCAG----VAHGIVSYGHPDAKP--PAIFTRVSTY  215 (224)
T ss_dssp             EEEECGGGTTTT-T---CCCTTTEEEECCTTSCCBCCTTTTTCEEEETT----EEEEEEEECCTTCCS--CEEEEEHHHH
T ss_pred             eeecChHHhccc-c---ccCcCCEEEecCCCCCCeeccCCCCCeEEEcc----eeeEEEEECCCCCCC--CcEEEEHHHh
Confidence            999999999872 2   24578899999877678999999999999843    899999999998764  9999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       216 ~~WI~~~i~  224 (224)
T 3rp2_A          216 VPWINAVIN  224 (224)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999985

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=100.00  E-value=4.9e-53  Score=371.79  Aligned_cols=219  Identities=32%  Similarity=0.641  Sum_probs=189.9

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|++.         ..++|+||||+++||||||||+..     .....|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~---------~~~~CgGtLI~~~~VLTAAHC~~~-----~~~~~v~~G~~~~~~~~~~~~   66 (226)
T 1azz_A            1 IVGGVEAVPNSWPHQAALFID---------DMYFCGGSLISPEWILTAAHCMDG-----AGFVDVVLGAHNIREDEATQV   66 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEET---------TTEEEEEEEEETTEEEECHHHHTT-----CSCEEEEESCSBSSSCCTTCE
T ss_pred             CCCCEECCCCCcCCEEEEEEC---------CcEEEEEEEecCCEEEEhHHhcCC-----CCceEEEEcceEcCCCCCccE
Confidence            789999999999999999752         248999999999999999999964     1357899999887654 3567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC-CCCccceEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRHV  265 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~  265 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....     ..+..++++|||.+.... ..+..|+++
T Consensus        67 ~~~v~~i~~hp~y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~-----~~~~~~~v~GwG~~~~~~~~~~~~L~~~  141 (226)
T 1azz_A           67 TIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDV-----GVGTVVTPTGWGLPSDSALGISDVLRQV  141 (226)
T ss_dssp             EEEECCEEECTTCBTTTTBSCCEEEECSSCCCCCSSSCCCBCCSSCC-----CTTCEEEEEESSCSSTTCSSSCSBCEEC
T ss_pred             EEEEEEEEECCCCCCCCCCCceEEEEECCccccCCCcccccCCCCCC-----CCCCEEEEEeCCccCCCCCCCCchhEEe
Confidence            88999999999999888889999999999999999999999996542     467889999999987533 467889999


Q ss_pred             EEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC--CCCCCCCCcEEEeC
Q psy2626         266 QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--KCAEVGFPGVYTRV  343 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~--~C~~~~~p~vyt~V  343 (355)
                      .+++++.+.|+..+.    .+.+.||||+.. ++.++|+|||||||++.  +  +|+||+|||.  .|.. +.|++||||
T Consensus       142 ~~~i~~~~~C~~~~~----~~~~~~~Ca~~~-~~~~~C~GDSGgPL~~~--~--~l~Gi~S~g~~~~C~~-~~p~vyt~V  211 (226)
T 1azz_A          142 DVPIMSNADCDAVYG----IVTDGNICIDST-GGKGTCNGDSGGPLNYN--G--LTYGITSFGAAAGCEA-GYPDAFTRV  211 (226)
T ss_dssp             CEEEECHHHHHHHHS----CCCTTEEEECCT-TTCBCCTTCTTCEEEET--T--EEEEEEEEEETTCTTS-CCCEEEEES
T ss_pred             eEEEEChhHhhhhhC----cCCCceEeecCC-CCCccCCCCCCcceEEC--C--EEEEEEEEECCCCCCC-CCCCEEEEH
Confidence            999999999998874    478999999863 47899999999999962  2  8999999997  5764 789999999


Q ss_pred             cccHHHHHhHhC
Q psy2626         344 TNYIQWIADNIS  355 (355)
Q Consensus       344 ~~y~~WI~~~i~  355 (355)
                      +.|++||+++|+
T Consensus       212 ~~~~~WI~~~~~  223 (226)
T 1azz_A          212 TYFLDWIQTQTG  223 (226)
T ss_dssp             GGGHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999999874

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=100.00  E-value=7.6e-53  Score=373.39  Aligned_cols=225  Identities=28%  Similarity=0.514  Sum_probs=193.2

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC--CCc
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT--SSG  185 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~--~~~  185 (355)
                      |+||.++..++|||||+|++..       ...++|+||||+++||||||||+..       ...|++|.++....  ...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~-------~~~~~CgGtLI~~~~VLTAAHC~~~-------~~~v~~g~~~~~~~~~~~~   66 (238)
T 4e7n_A            1 IIGGDECNINEHRFLVALYTSR-------SRTLFCGGTLINQEWVLTAAHCDRK-------NFRIKLGMHSKKVPNEDEQ   66 (238)
T ss_dssp             CBSCEECCTTSCTTEEEEECTT-------TCCEEEEEEECSSSEEEECGGGCCS-------SCEEEESCSCSSSCCTTCE
T ss_pred             CCCCeeCCCCCcCcEEEEEECC-------CCCEEEEEEEecCCEEEEhHHcCCC-------CCeEEeceeeccccCCCce
Confidence            7899999999999999997532       1358999999999999999999853       46789998876543  233


Q ss_pred             EEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC-CCCccceE
Q psy2626         186 VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRH  264 (355)
Q Consensus       186 ~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~  264 (355)
                      ..+.++.+++||.|+.....||||||||++|+.|+++++|||||....     ..+..++++|||.+.... ..+..|+.
T Consensus        67 ~~~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~-----~~~~~~~v~GwG~~~~~~~~~~~~l~~  141 (238)
T 4e7n_A           67 TRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPP-----SVGSVCRIMGWGRISPTEGTYPDVPHC  141 (238)
T ss_dssp             EECEEEEECSSTTCCCCSSSCCCEEEEESSCCCCBTTBCCCCCCSSCC-----CTTCEEEEEESSCSSSSSCCCCSSCEE
T ss_pred             eEeeeeeEEcCCCCCCCCCCCcEEEEEeCCCccCCCceeeeeCCCCCC-----CCCCEEEEEECCCCCCCCCCCCccceE
Confidence            445677778899999999999999999999999999999999997653     358899999999987543 56788999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeC
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRV  343 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V  343 (355)
                      +.+++++.+.|+..+..+...+.+.||||+...++.++|+|||||||++..    .|+||+|||.. |+..+.|++||||
T Consensus       142 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V  217 (238)
T 4e7n_A          142 VNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLICNG----QFQGIASWGDDPCAQPHKPAAYTKV  217 (238)
T ss_dssp             EEEEEECGGGGTTTCGGGCCCSCCSEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEEEECCSSTTCTTCCEEEEES
T ss_pred             eeccccCHHHHhhhcccccCCCCCCeEEeCCCCCCCccCCCCCCcceEECC----EEEEEEEEeCCCCCCCCCCeEEEEh
Confidence            999999999999988765557889999999766688999999999999853    49999999987 9988899999999


Q ss_pred             cccHHHHHhHhC
Q psy2626         344 TNYIQWIADNIS  355 (355)
Q Consensus       344 ~~y~~WI~~~i~  355 (355)
                      +.|++||+++|+
T Consensus       218 ~~~~~WI~~~i~  229 (238)
T 4e7n_A          218 FDHLDWIENIIA  229 (238)
T ss_dssp             GGGHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999999985

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=100.00  E-value=8e-53  Score=369.93  Aligned_cols=221  Identities=32%  Similarity=0.564  Sum_probs=189.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||.+|.+++|||||+|.             +.|+||||+++||||||||+...  .....+.|++|.+++... ..+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~-------------~~CgGtLI~~~~VLTAAHC~~~~--~~~~~~~v~~G~~~~~~~-~~~~   64 (224)
T 3beu_A            1 VVGGTRAAQGEFPFMVRLS-------------MGCGGALYAQDIVLTAAHCVSGS--GNNTSITATGGVVDLQSS-SAVK   64 (224)
T ss_dssp             CBTCEECCTTTSTTEEEET-------------TTEEEEEEETTEEEECGGGSCSS--EEBCCCEEEESCSBTTCT-TCEE
T ss_pred             CCCCeECCCCCCCEEEEEC-------------CceeEEEeeCCEEEEChhhcCCC--CCcceEEEEeeEeecCCC-CceE
Confidence            7899999999999999993             35999999999999999999752  123457899999887643 3478


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI  267 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~  267 (355)
                      +.|+++++||+|+.....||||||||++|+.+    .|+||+....     ..+..++++|||.+...+..+..|+++.+
T Consensus        65 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~----~~i~l~~~~~-----~~~~~~~v~GwG~~~~~~~~~~~l~~~~~  135 (224)
T 3beu_A           65 VRSTKVLQAPGFTKETYGKDWALIKLAQPINQ----PTLKIATTTA-----YNQGTFTVAGWGANREGGSQQRYLLKANV  135 (224)
T ss_dssp             EEEEEEEECTTCCCGGGSCCCEEEEESSCCCS----CCCEECCSST-----TSSSEEEEEESSCSSTTCCCCSBCEEEEE
T ss_pred             EEEEEEEeCCCcCCCcCCCCEEEEEeCCCCCC----Cccccccccc-----cCCCEEEEEecCccCCCCcccceeeEeeC
Confidence            89999999999998888899999999999964    6889986432     24558999999998876667888999999


Q ss_pred             eeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeee-CCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         268 SVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       268 ~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      ++++.+.|+..+..  ..+.+.||||+...++.++|+|||||||++.. +++|+|+||+|||..|+..+.|++||||+.|
T Consensus       136 ~~~~~~~C~~~~~~--~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~  213 (224)
T 3beu_A          136 PFVSDAACRSSSSF--ILVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTF  213 (224)
T ss_dssp             EEECHHHHHHHCSS--CCCGGGEEEECCSSSSCBCCTTCTTCEEEEECTTSCEEEEEEEEEESSSSCTTCCEEEEEHHHH
T ss_pred             cccCHHHhhhhcCC--ccCCCCeEEeccCCCCCcCCCCcCCCeeEEecCCCCEEEEEEeccCCCCCCCCCCeEEEEHHHH
Confidence            99999999987753  25778999999766578999999999999976 5899999999999999987889999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       214 ~~WI~~~~~  222 (224)
T 3beu_A          214 ASAIASAAR  222 (224)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999999985

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=100.00  E-value=2.7e-53  Score=404.25  Aligned_cols=242  Identities=29%  Similarity=0.534  Sum_probs=189.3

Q ss_pred             CCCCCCc--CCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCC--CCcCceE
Q psy2626          96 ECGVNAF--NSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTT--GEYEPYI  171 (355)
Q Consensus        96 ~CG~~~~--~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~--~~~~~~~  171 (355)
                      .||+...  ....||+||.+|..++|||||+|.+           .+.||||||+++||||||||+.....  .....+.
T Consensus       144 ~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~-----------~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~  212 (399)
T 1gpz_A          144 VCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNI-----------HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLD  212 (399)
T ss_dssp             CCSCCSSCCCSSCCCCSCEECCTTSSTTEEEEES-----------SSEEEEEEETTTEEEECGGGTSCTTC-----CCCE
T ss_pred             CCCCcCCcccCCCEEECCEECCCCCCCCEEEECC-----------CCCeEEEEeCCCEEEeChhcccccccccCCcceEE
Confidence            6998632  1357999999999999999999843           13699999999999999999975221  1123467


Q ss_pred             EEeccccccCCCCcEEEEEeeeEeCCCCCCC---CCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEE
Q psy2626         172 VHVGSIDLEDTSSGVSIEIERPIIHEQYTSA---RKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAG  248 (355)
Q Consensus       172 v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~---~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~G  248 (355)
                      |++|.+++......+.+.|+++++||+|+..   ...||||||||++|+.|+++|+|||||....   ....+..++++|
T Consensus       213 v~~G~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~---~~~~~~~~~v~G  289 (399)
T 1gpz_A          213 VFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT---FYDLGLMGYVSG  289 (399)
T ss_dssp             EEESCSBHHHHHHTCCCCEEEEEECSSCCSSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGG---GGCTTCEEEEEE
T ss_pred             EEeccccccccccccccceEEEEECCCCCcCCCCCCCCcEEEEEECCcCcCCCceeeeecCCCcc---ccCCCCEEEEEc
Confidence            9999887643222345689999999999753   4669999999999999999999999997653   234577899999


Q ss_pred             eccCCCCCCCCccceEEEEeeeChhHHHhhhhcC--CCCCCCCeEEecccCCCCCCCcCCCCCcceeee--CCeEEEEEE
Q psy2626         249 WGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY--GATINENILCAGVLSGGKDSCGGDSGGPLMYPL--DTKYYIIGV  324 (355)
Q Consensus       249 wG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~--~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~--~~~~~lvGI  324 (355)
                      ||.+...  .+..|+++.+++++.+.|+..+...  ...++++||||+...++.++|+|||||||++..  +++|+|+||
T Consensus       290 wG~~~~~--~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~Cag~~~~~~d~C~GDSGGPl~~~~~~~~~~~l~Gi  367 (399)
T 1gpz_A          290 FGVMEEK--IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGI  367 (399)
T ss_dssp             CC-------CCSBCEEEEEEEECHHHHHC-----------CCSEEEEECGGGGGGGGCSCSSCEEEEEETTTTEEEEEEE
T ss_pred             cCCCCCc--cCccceEEEEEEcCHHHhhhhhhcccccCcCCCCeEecccCCCCCccCCCCCchHeEEEECCCCeEEEEEE
Confidence            9988642  5778999999999999999876532  124788999998765568999999999999875  479999999


Q ss_pred             EEeCCCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         325 VSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       325 ~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      +|||.+|+.  .|+|||||+.|++||+++|+
T Consensus       368 vS~g~~C~~--~~~vyt~V~~y~~WI~~~~~  396 (399)
T 1gpz_A          368 VSWGIGCSR--GYGFYTKVLNYVDWIKKEME  396 (399)
T ss_dssp             ECCCTTTTT--TEEEEEEGGGGHHHHHHHTC
T ss_pred             EEeCCCcCC--CCeEEEEhHHhHHHHHHHhc
Confidence            999999985  38999999999999999985

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=100.00  E-value=1.8e-52  Score=369.44  Aligned_cols=218  Identities=31%  Similarity=0.558  Sum_probs=189.4

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC--CCc
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT--SSG  185 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~--~~~  185 (355)
                      |+||.+|..++|||||+|+.       +   .++|+||||+++||||||||+..       ...|++|.+++...  ...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-------~---~~~CgGsLIs~~~VLTAAHC~~~-------~~~v~~G~~~~~~~~~~~~   63 (231)
T 2aiq_A            1 VIGGDECNINEHRFLALVYA-------N---GSLCGGTLINQEWVLTARHCDRG-------NMRIYLGMHNLKVLNKDAL   63 (231)
T ss_dssp             CBSCEECCTTSCTTEEEEEE-------T---TEEEEEEECSSSEEEECGGGCCS-------SCEEEESCSCTTSCCTTCE
T ss_pred             CCCCeECCCCCCCeEEEEEc-------C---CCeEEEEEEeCCEEEEcHHcCCC-------CCEEEEecccccccCCCce
Confidence            78999999999999999962       1   37899999999999999999864       46799999887643  335


Q ss_pred             EEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCC-CCCCccceE
Q psy2626         186 VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFR-GPLSPKLRH  264 (355)
Q Consensus       186 ~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~-~~~~~~l~~  264 (355)
                      +.+.|+++++||+|+.....||||||||++|+.|+++++|||||....     ..+..++++|||.+... ...+..|++
T Consensus        64 ~~~~v~~~~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~-----~~~~~~~v~GwG~~~~~~~~~~~~l~~  138 (231)
T 2aiq_A           64 RRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPP-----SVGSVCRIMGWGTITSPNATLPDVPHC  138 (231)
T ss_dssp             EECEEEEECCSSCCSSSTTTTCCEEEEESSCCCCBTTBCCCCCCSSCC-----CTTCEEEEEESSCSSSSSCCCCSSCEE
T ss_pred             EEEEEEEEEECCCCCCCCCCCCEEEEEecCCCCCCCcEEeeECCCCCC-----CCCCEEEEEeCCccCCCCCccCchhhh
Confidence            678999999999999988899999999999999999999999997543     46788999999988653 335788999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeC-CCCCCCCCCcEEEeC
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRV  343 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g-~~C~~~~~p~vyt~V  343 (355)
                      +.+++++.+.|+..+..    +.+.||||+....+.++|+|||||||++.  +  +|+||+||| ..|+..+.|++||||
T Consensus       139 ~~~~~~~~~~C~~~~~~----~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~--~--~l~Gi~S~g~~~C~~~~~p~vyt~V  210 (231)
T 2aiq_A          139 ANINILDYAVCQAAYKG----LAATTLCAGILEGGKDTCKGDSGGPLICN--G--QFQGILSVGGNPCAQPRKPGIYTKV  210 (231)
T ss_dssp             EEEEEECHHHHHHHCTT----CCSSEEEEECTTCSCBCCTTCTTCEEEET--T--EEEEEEEEECSSTTCTTCCEEEEEG
T ss_pred             ccceecchhhhhhhhcC----CCcCcEEeccCCCCCcccCCcCCCcEEEC--C--EEEEEEEEeCCCCCCCCCCEEEEEH
Confidence            99999999999988752    78899999875567899999999999984  2  799999999 679988889999999


Q ss_pred             cccHHHHHhHhC
Q psy2626         344 TNYIQWIADNIS  355 (355)
Q Consensus       344 ~~y~~WI~~~i~  355 (355)
                      +.|++||+++|+
T Consensus       211 ~~~~~WI~~~~~  222 (231)
T 2aiq_A          211 FDYTDWIQSIIS  222 (231)
T ss_dssp             GGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999999873

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=100.00  E-value=1.7e-52  Score=366.32  Aligned_cols=215  Identities=28%  Similarity=0.538  Sum_probs=187.0

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|.+..         .++|+||||+++||||||||+...   ....+.|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~---------~~~CgGtLI~~~~VLTAAHC~~~~---~~~~~~v~~G~~~~~~~~~~~~   68 (218)
T 2z7f_E            1 IVGGRRARPHAWPFMVSLQLRG---------GHFCGATLIAPNFVMSAAHCVANV---NVRAVRVVLGAHNLSRREPTRQ   68 (218)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT---------EEEEEEEEEETTEEEECHHHHTTS---CGGGCEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCccCcEEEEEeCC---------CcEEEEEEccCCEEEEcHHhcCCC---CcCcEEEEEeceecCCCCCceE
Confidence            6899999999999999997642         489999999999999999999752   23567899999887654 3458


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|++++.| +|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|+++.
T Consensus        69 ~~~v~~i~~h-~y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  144 (218)
T 2z7f_E           69 VFAVQRIFEN-GYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGR---RLGNGVQCLAMGWGLLGRNRGIASVLQELN  144 (218)
T ss_dssp             EEEEEEEEES-CCBTTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTC---CCCTTCEEEEEESSBCSSSCCBCSBCEEEE
T ss_pred             EEEEEEEEcc-CCCCCCCCCCEEEEEECCcCcCCCceeccCcCCCCC---CCCCCCEEEEEEeCCCCCCCCccchheEee
Confidence            8999999999 999888899999999999999999999999997653   335688899999999987666688899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEe--CCCCCCCCCCcEEEeCc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSY--GKKCAEVGFPGVYTRVT  344 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~--g~~C~~~~~p~vyt~V~  344 (355)
                      ++++ .+.|+..           |+|++....+.++|+|||||||++..    +|+||+||  |. |+..+.|++||||+
T Consensus       145 ~~~~-~~~C~~~-----------~~Ca~~~~~~~~~C~GDSGgPl~~~~----~l~Gi~S~~~g~-C~~~~~p~vyt~V~  207 (218)
T 2z7f_E          145 VTVV-TSLCRRS-----------NVCTLVRGRQAGVCFGDSGSPLVCNG----LIHGIASFVRGG-CASGLYPDAFAPVA  207 (218)
T ss_dssp             EEEE-CTTCCTT-----------SEEEECTTSCCBCCTTCTTCEEEETT----EEEEEEEEESSS-TTCSSSCEEEEEGG
T ss_pred             eEEe-hhHcCcc-----------eeeeccCCCCCeeCCCcCCCceEEcc----EEEEEEEeCCcc-CCCCCCCeEEEEHH
Confidence            9999 8888652           89998766578999999999999843    79999999  65 98878899999999


Q ss_pred             ccHHHHHhHhC
Q psy2626         345 NYIQWIADNIS  355 (355)
Q Consensus       345 ~y~~WI~~~i~  355 (355)
                      .|++||+++|+
T Consensus       208 ~~~~WI~~~~~  218 (218)
T 2z7f_E          208 QFVNWIDSIIQ  218 (218)
T ss_dssp             GGHHHHHHHHC
T ss_pred             HhHHHHHHHhC
Confidence            99999999985

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=100.00  E-value=4.6e-52  Score=367.43  Aligned_cols=221  Identities=30%  Similarity=0.523  Sum_probs=188.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC--CCc
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT--SSG  185 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~--~~~  185 (355)
                      |+||+++..++|||||+|.+.         ..++|+||||+++||||||||+..       ...|++|.++....  ...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~---------~~~~CgGtLI~~~~VLTAAHC~~~-------~~~v~~g~~~~~~~~~~~~   64 (234)
T 3s69_A            1 VIGGDECNINEHRSLVAFFNS---------TGFFCSGTLINEEWVLTAAHCDNT-------NFQMKLGVHSKKVLNEDEQ   64 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEECS---------SCEEEEEEEEETTEEEECGGGCCS-------SCEEEESCCCSSSCCTTCE
T ss_pred             CCCCccCCCCCCceEEEEeeC---------CCeEEeEEEeeCCEEEEchhhCCC-------CceEEecccccccccCCcc
Confidence            789999999999999999653         248999999999999999999853       46789998876543  223


Q ss_pred             EEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC-CCCccceE
Q psy2626         186 VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRH  264 (355)
Q Consensus       186 ~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~  264 (355)
                      ....++.++.||+|+.....||||||||++|+.|+++++|||||....     ..+..++++|||.+.... ..+..|+.
T Consensus        65 ~~~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~-----~~~~~~~v~GwG~~~~~~~~~~~~l~~  139 (234)
T 3s69_A           65 TRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPP-----SVGSVCHIMGWGSITPIKVTYPDVPYC  139 (234)
T ss_dssp             EECEEEEEECTTCCTTCTTSSCCEEEEESSCCCCBTTBCCCCCCSSCC-----CTTCEEEEEESSCSSSSSCCCCSSCEE
T ss_pred             eeeceEEEECCCccCCCCCcccEEEEeeCCcCCCCCcceeeecCCCCC-----CCCCEEEEEECCCCCCCCcCcccccce
Confidence            344566677799999999999999999999999999999999997653     358899999999987543 46788999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeC
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRV  343 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V  343 (355)
                      +.+++++.+.|+..+..  ..+.+.||||+...++.++|+|||||||++..    .|+||+|||.. |+..+.|++||||
T Consensus       140 ~~~~~~~~~~C~~~~~~--~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V  213 (234)
T 3s69_A          140 AYINLLDDAVCQAGYPE--LLTEYRTLCAGILEGGKDTCGGDSGGPLICNG----QFQGIVSFGAHPCGQGLKPGVYTKV  213 (234)
T ss_dssp             EEEEEECHHHHHHHCTT--CCTTSCEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEEEECCSSTTCTTCCEEEEEG
T ss_pred             eEEeecCHHHHhhhccc--ccCCcceEeccCCCCCCccCCCCCccceEEcC----EEEEEEEEcccccCCCCCCcEEeeH
Confidence            99999999999998764  35788999999766688999999999999854    49999999987 9988889999999


Q ss_pred             cccHHHHHhHhC
Q psy2626         344 TNYIQWIADNIS  355 (355)
Q Consensus       344 ~~y~~WI~~~i~  355 (355)
                      +.|++||+++|+
T Consensus       214 ~~~~~WI~~~i~  225 (234)
T 3s69_A          214 FDYNHWIQSIIA  225 (234)
T ss_dssp             GGGHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999999873

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=100.00  E-value=2.3e-52  Score=369.37  Aligned_cols=222  Identities=29%  Similarity=0.510  Sum_probs=190.5

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC--CCc
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT--SSG  185 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~--~~~  185 (355)
                      |+||++|..++|||||+|++...       ..++|+||||+++||||||||+..       ...|++|.++....  ...
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-------~~~~CgGtLI~~~~VLTAAHC~~~-------~~~v~~g~~~~~~~~~~~~   66 (234)
T 3s9c_A            1 VVGGDECNINEHPFLVALYTSAS-------STIHCAGALINREWVLTAAHCDRR-------NIRIKLGMHSKNIRNEDEQ   66 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTE-------EEEEEEEEEEETTEEEECGGGCCT-------TEEEEESCSSSSSCCTTCE
T ss_pred             CCCCeeCCCCCCCeEEEEEECCC-------CcEEEeeEEeeCCEEEEchhhcCC-------CceEEEeecccccccCCcc
Confidence            78999999999999999976421       257899999999999999999853       47799998876643  233


Q ss_pred             EEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEE
Q psy2626         186 VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHV  265 (355)
Q Consensus       186 ~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~  265 (355)
                      ..+.+..+++||.|+.....||||||||++|+.|+++++|||||....     ..+..++++|||.+... ..+..|+.+
T Consensus        67 ~~~~~~~~~~h~~~~~~~~~~DIALl~L~~~v~~~~~v~pi~L~~~~~-----~~~~~~~v~GwG~~~~~-~~~~~l~~~  140 (234)
T 3s9c_A           67 IRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSR-----GVGSRCRIMGWGKISTT-TYPDVPHCT  140 (234)
T ss_dssp             EECEEEEECCSSCSSTTCGGGCCEEEEESSCCCCBTTBCCCBCCSSCC-----CTTCEEEEEESSCSBTT-BCCSSCEEE
T ss_pred             eEEeeeEEEeCCCCCCCCCcCceEEEEECCccccCCcccccccCCCCC-----CCCCeEEEEeeCCCCCC-CCCcccccc
Confidence            445566777899999988889999999999999999999999997653     34889999999998765 468889999


Q ss_pred             EEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeCc
Q psy2626         266 QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVT  344 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V~  344 (355)
                      .+.+++.+.|+..+..  ..+.+.||||+...++.++|+|||||||++..    .|+||+|||.. |+..+.|++||||+
T Consensus       141 ~~~~~~~~~C~~~~~~--~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~  214 (234)
T 3s9c_A          141 NIFIVKHKWCEPLYPW--VPADSRTLCAGILKGGRDTCHGDSGGPLICNG----EMHGIVAGGSEPCGQHLKPAVYTKVF  214 (234)
T ss_dssp             EEEEECGGGTTTTCTT--SCTTSSEEEEECTTSSCBCCTTCTTCEEEETT----EEEEEEEECCSSTTCTTCCEEEEEGG
T ss_pred             ceEecCHHHhhhcccC--CCCCcceEEeecCCCCCccCCCCCCCeEEEeC----CcEEEEEEeCCCCCCCCCCcEEEEhH
Confidence            9999999999988763  36789999999766689999999999999854    49999999987 99888999999999


Q ss_pred             ccHHHHHhHhC
Q psy2626         345 NYIQWIADNIS  355 (355)
Q Consensus       345 ~y~~WI~~~i~  355 (355)
                      .|++||+++|+
T Consensus       215 ~y~~WI~~~i~  225 (234)
T 3s9c_A          215 DYNNWIQSIIA  225 (234)
T ss_dssp             GGHHHHHHHHH
T ss_pred             HhHHHHHHHHc
Confidence            99999999873

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=100.00  E-value=5.7e-52  Score=364.80  Aligned_cols=215  Identities=33%  Similarity=0.579  Sum_probs=184.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCC--c
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSS--G  185 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~--~  185 (355)
                      |+||.++..++|||||+|.+.         ..++|+||||+++||||||||+...   ......|++|.+++.....  .
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~---------~~~~CgGtLI~~~~VLTAAHC~~~~---~~~~~~V~~G~~~~~~~~~~~~   68 (225)
T 1a7s_A            1 IVGGRKARPRQFPFLASIQNQ---------GRHFCGGALIHARFVMTAASCFQSQ---NPGVSTVVLGAYDLRRRERQSR   68 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEET---------TEEEEEEEEEETTEEEECGGGC-------CCSEEEEESCSSTTSCCTTTC
T ss_pred             CCCCEECCCCCCCcEEEEecC---------CCcEEEEEEeeCCEEEEchhccCCC---CCCceEEEEeeeECCCCCCcce
Confidence            789999999999999999753         2489999999999999999999752   2246789999988765432  2


Q ss_pred             EEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEE
Q psy2626         186 VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHV  265 (355)
Q Consensus       186 ~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~  265 (355)
                      +.+.|++++.| +|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|+++
T Consensus        69 ~~~~v~~i~~h-~y~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~l~~~  144 (225)
T 1a7s_A           69 QTFSISSMSEN-GYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNA---TVEAGTRCQVAGWGSQRSGGRLSRFPRFV  144 (225)
T ss_dssp             EEEEEEEEECS-SCBTTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTC---CCCTTCEEEEEESCCSSTTCCCCSSCEEE
T ss_pred             eEEeEEEEecc-cccCCCCcCCEEEEEcCCcccCCCceeEEEcCCCcC---CCCCCCEEEEEeCCcCCCCCCccccccee
Confidence            78999999999 999888889999999999999999999999997653   33578889999999998766678899999


Q ss_pred             EEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeC-CCCCCCCCCcEEEeCc
Q psy2626         266 QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVT  344 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g-~~C~~~~~p~vyt~V~  344 (355)
                      .+++++.+.|+.           +|+||+...++.++|+|||||||++.  +  +|+||+||| ..|+..  |++||||+
T Consensus       145 ~~~~~~~~~C~~-----------~~~Ca~~~~~~~~~C~GDSGgPl~~~--g--~l~Gi~S~g~~~C~~~--p~vyt~V~  207 (225)
T 1a7s_A          145 NVTVTPEDQCRP-----------NNVCTGVLTRRGGICNGDGGTPLVCE--G--LAHGVASFSLGPCGRG--PDFFTRVA  207 (225)
T ss_dssp             EEEECCGGGSCT-----------TEEEEECSSSSCBCCTTCTTCEEEET--T--EEEEEEEEECSSTTSS--CEEEEEGG
T ss_pred             eeEECCHHHhcc-----------CceEEeccCCCCCcccCCCcchheeC--C--EEEEEEEEccCCcCCC--CcEEEEhH
Confidence            999999999964           69999976657899999999999986  2  899999999 668864  99999999


Q ss_pred             ccHHHHHhHhC
Q psy2626         345 NYIQWIADNIS  355 (355)
Q Consensus       345 ~y~~WI~~~i~  355 (355)
                      .|++||+++|+
T Consensus       208 ~~~~WI~~~~~  218 (225)
T 1a7s_A          208 LFRDWIDGVLN  218 (225)
T ss_dssp             GGHHHHHHHHH
T ss_pred             HhHHHHHHHhc
Confidence            99999999873

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=100.00  E-value=1.3e-51  Score=363.63  Aligned_cols=225  Identities=34%  Similarity=0.613  Sum_probs=189.5

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||.+|.+++|||||+|.+...     ....++|+||||+++||||||||+..     .....|++|.++....  .+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~-----~~~~~~CgGtLIs~~~VLTAAHC~~~-----~~~~~v~~G~~~~~~~--~~~   68 (230)
T 2hlc_A            1 IINGYEAYTGLFPYQAGLDITLQ-----DQRRVWCGGSLIDNKWILTAAHCVHD-----AVSVVVYLGSAVQYEG--EAV   68 (230)
T ss_dssp             CBTCEECCTTTSTTEEEEEEEET-----TSCEEEEEEEEEETTEEEECHHHHTT-----EEEEEEEESCSBTTCC--SEE
T ss_pred             CCCCeECCCCCCCcEEEEEEEec-----CCCCEEEEEEEeeCCEEEECHHHCCC-----CcceEEEEeeeecCCC--CeE
Confidence            78999999999999999976532     22468999999999999999999964     2357899999877653  378


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI  267 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~  267 (355)
                      +.|+++++||+|+.....||||||||+ ++.|+++++|||||...... ....+..++++|||.+....   ..|+++.+
T Consensus        69 ~~v~~i~~hp~y~~~~~~~DiALl~L~-~~~~~~~v~picLp~~~~~~-~~~~~~~~~v~GwG~~~~~~---~~l~~~~~  143 (230)
T 2hlc_A           69 VNSERIISHSMFNPDTYLNDVALIKIP-HVEYTDNIQPIRLPSGEELN-NKFENIWATVSGWGQSNTDT---VILQYTYN  143 (230)
T ss_dssp             EECSEEEECTTCBTTTTBTCCEEEECS-CCCCCSSCCCCBCCCGGGGG-CCCTTCEEEEEESSCCSSCC---CBCEEEEE
T ss_pred             EEEEEEEECCCCCCCCccccEEEEEec-CCCcCCcEeeeEcCCccccc-cccCCcEEEEEeeeecCCCC---ceeEEEEE
Confidence            899999999999998889999999999 99999999999999754311 13467789999999876432   67999999


Q ss_pred             eeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC--CCCCCCCCcEEEeCcc
Q psy2626         268 SVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--KCAEVGFPGVYTRVTN  345 (355)
Q Consensus       268 ~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~--~C~~~~~p~vyt~V~~  345 (355)
                      ++++.+.|+..+..  ..+.+.|||++... +.++|+|||||||++..  +++|+||+|||.  .|. .+.|++||||+.
T Consensus       144 ~~~~~~~C~~~~~~--~~~~~~~~Ca~~~~-~~~~C~GDSGgPl~~~~--~~~l~Gi~S~g~~~~C~-~~~p~vyt~V~~  217 (230)
T 2hlc_A          144 LVIDNDRCAQEYPP--GIIVESTICGDTSD-GKSPCFGDSGGPFVLSD--KNLLIGVVSFVSGAGCE-SGKPVGFSRVTS  217 (230)
T ss_dssp             EEECHHHHHTTSCT--TSSCTTEEEECCTT-SCBCCTTCTTCEEEEGG--GTEEEEEEEECCTTCTT-SCCCEEEEEGGG
T ss_pred             EEeCHHHhhhhhCC--CcccCCeEEecCCC-CCCcCCCCCCCeeEECc--CCEEEEEEEEeCCCCCC-CCCCCEEEEhHH
Confidence            99999999987653  25788999998744 68999999999999865  348999999987  584 578999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++|+
T Consensus       218 ~~~WI~~~~~  227 (230)
T 2hlc_A          218 YMDWIQQNTG  227 (230)
T ss_dssp             GHHHHHHHHC
T ss_pred             hHHHHHHhhC
Confidence            9999999874

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=100.00  E-value=3.9e-52  Score=366.42  Aligned_cols=225  Identities=28%  Similarity=0.467  Sum_probs=194.9

Q ss_pred             ecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEE
Q psy2626         109 VGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSI  188 (355)
Q Consensus       109 ~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~  188 (355)
                      .||.+|.+++|||||+|.+...      ...++|+||||+++||||||||+..   .......|++|.++.......+.+
T Consensus         1 ~gG~~a~~~~~Pw~v~l~~~~~------~~~~~CgGtLI~~~~VLTAAHC~~~---~~~~~~~v~~g~~~~~~~~~~~~~   71 (228)
T 3h7o_A            1 KGGEKTDIKQVPWTVAVRTYPG------EESLTCGGAILSQWFVLTAAHCVFD---QKPETIVIQYESTNLWEDPGKSDP   71 (228)
T ss_dssp             CCCEECCGGGSTTEEEEEECGG------GCCEEEEEEESSSSEEEECHHHHTT---SCGGGCEEEESCSBTTTBCCEEEC
T ss_pred             CCCccCCcCCCCeEEEEeecCC------CCceEeeeEEeeCCEEEEcHHhccc---CCCCcEEEEecccccccCCCceee
Confidence            4899999999999999976432      1235899999999999999999975   233568899999988766666888


Q ss_pred             EEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCC-CccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEE
Q psy2626         189 EIERPIIHEQYTSARKLNDIALFRLREDAPLSD-LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI  267 (355)
Q Consensus       189 ~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~-~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~  267 (355)
                      .|+++++| +|+.....||||||||++|+.|++ .++|||||....   ....+..++++|||.+...+..+..|+++.+
T Consensus        72 ~v~~i~~h-~y~~~~~~~DIALl~L~~~v~~~~~~v~pi~lp~~~~---~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~  147 (228)
T 3h7o_A           72 YVSHVYLS-FYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEF---RPKTGSDVLVSGYGDGQTMDPKDHDLKSAQL  147 (228)
T ss_dssp             CEEEEEES-SCBTTTTBTCCEEEEESSCCCCCSSSSCCCBCCCTTC---CCCTTCEEEEEECCCSSCSCGGGGBCEEEEE
T ss_pred             eEEEEEcc-ccCCCCccCCEEEEEECCcccccccccccccCCcccc---CCCCCCeeEEEEEecCCCCCCccccccccee
Confidence            99999999 999988899999999999999999 999999997653   3467889999999998876666788999999


Q ss_pred             eeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccH
Q psy2626         268 SVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI  347 (355)
Q Consensus       268 ~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~  347 (355)
                      ++++.++|+..+..  ..+.+.||||+...  .++|+|||||||++..    .|+||+|||..|+. +.|+|||||+.|+
T Consensus       148 ~~~~~~~C~~~~~~--~~~~~~~~Ca~~~~--~~~C~GDsGgPl~~~~----~l~Gi~S~g~~c~~-~~p~vyt~v~~~~  218 (228)
T 3h7o_A          148 TVVDLDECRTKYGP--IFLSLQVFCAQKVG--VSLESGDAGDPTVQQD----TLVGVAAYFPKRPE-GAPEVFTKVGSYV  218 (228)
T ss_dssp             EEECHHHHHHHHTT--SCCCSSEEEEECTT--CCCCGGGTTCEEEETT----EEEEEECCCTTCCT-TCCEEEEEGGGTH
T ss_pred             EEEcHHHHHHHhcC--ccCCceEEecCCCC--CcCCCCCCCCcceecC----eEEEEEeecCcCCC-CCCcEEEEHHHHH
Confidence            99999999998864  35789999998643  8999999999999843    49999999999987 7899999999999


Q ss_pred             HHHHhHhC
Q psy2626         348 QWIADNIS  355 (355)
Q Consensus       348 ~WI~~~i~  355 (355)
                      +||+++|+
T Consensus       219 ~WI~~~i~  226 (228)
T 3h7o_A          219 SWIQDIIK  226 (228)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99999985

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=4.1e-51  Score=358.36  Aligned_cols=219  Identities=30%  Similarity=0.542  Sum_probs=187.5

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||++|.+++|||||+|.+...    .  ..++|+||||+++||||||||+...   ......|++|.++.... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~----~--~~~~CgGtLIs~~~VLTAAHC~~~~---~~~~~~v~~G~~~~~~~~~~~~   71 (221)
T 1fuj_A            1 IVGGHEAQPHSRPYMASLQMRGN----P--GSHFCGGTLIHPSFVLTAAHCLRDI---PQRLVNVVLGAHNVRTQEPTQQ   71 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTB----T--TCCCEEEEEEETTEEEECGGGGSSS---CGGGEEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCcCCEEEEEEecC----C--CCEEEEEEEecCCEEEEchHhcCcC---CCCceEEEEeeeeccCCCCceE
Confidence            78999999999999999976432    1  2578999999999999999999752   22468899999887654 4568


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++| +|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+...+..+..|++..
T Consensus        72 ~~~v~~i~~h-~y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~---~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~  147 (221)
T 1fuj_A           72 HFSVAQVFLN-NYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQ---PVPHGTQCLAMGWGRVGAHDPPAQVLQELN  147 (221)
T ss_dssp             EEEEEEEEEC-CCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTC---CCCTTCEEEEEESSBSCSSSCBCSBCEEEE
T ss_pred             EEEEEEEEeC-CCCCCCCcccEEEEEeCCccccCCcceeeECCCCcC---CCCCCCEEEEEEeCCCCCCCCHHHHhhccc
Confidence            8999999999 999888889999999999999999999999997653   345788999999999876666778899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC-CCCCCCCCcEEEeCcc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTN  345 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~-~C~~~~~p~vyt~V~~  345 (355)
                      ++++ ...|+.           .++|++....+.++|.|||||||++.  +  +|+||+||+. +|+..+.|++||||+.
T Consensus       148 ~~~~-~~~C~~-----------~~~Ca~~~~~~~~~C~GDSGgPL~~~--~--~l~Gi~s~~~~gC~~~~~p~vyt~v~~  211 (221)
T 1fuj_A          148 VTVV-TFFCRP-----------HNICTFVPRRKAGICFGDSGGPLICD--G--IIQGIDSFVIWGCATRLFPDFFTRVAL  211 (221)
T ss_dssp             EEEE-CTTCCT-----------TEEEEECSSSSCBCCTTCTTCEEEET--T--EEEEEEEECSSSTTCSSSCEEEEEGGG
T ss_pred             ceEE-eeecCC-----------ceeeeccCCCCCCCCCCCCCCeeEEC--C--EEeEEEEEeccCCCCCCCCcEEEeHHH
Confidence            9999 777854           28999876657899999999999983  2  7999999955 3988788999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++|+
T Consensus       212 ~~~WI~~~i~  221 (221)
T 1fuj_A          212 YVDWIRSTLR  221 (221)
T ss_dssp             GHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999986

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=100.00  E-value=3.9e-52  Score=410.66  Aligned_cols=240  Identities=34%  Similarity=0.657  Sum_probs=155.6

Q ss_pred             CCCCCCc--CCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEE
Q psy2626          96 ECGVNAF--NSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVH  173 (355)
Q Consensus        96 ~CG~~~~--~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~  173 (355)
                      .||....  ....||+||.+|.+++|||||+|...         ..++|+||||+++||||||||+...   ....+.|+
T Consensus       308 ~CG~~~~~~~~~~rIvgG~~a~~g~~Pw~v~l~~~---------~~~~CGGsLIs~~~VLTAAHCv~~~---~~~~~~V~  375 (565)
T 2xrc_A          308 SCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDA---------SGITCGGIYIGGCWILTAAHCLRAS---KTHRYQIW  375 (565)
T ss_dssp             CCCC--------------------CCTTBCEEEES---------SSCCCCCEEEETTEEEECHHHHTTC---SSCCEEEE
T ss_pred             ccCCCCCcccCCCceECCEECCCCCCCcEEEEecC---------CceeeeEEEEeCCEEEEChhhcccC---CCcceEEE
Confidence            7998642  13579999999999999999999642         2478999999999999999999752   23467899


Q ss_pred             eccccccCC--CCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCC----CccccccCCCCCccccccCCCceEEE
Q psy2626         174 VGSIDLEDT--SSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD----LIQPICLPYDTNLRSELFERKTPFVA  247 (355)
Q Consensus       174 ~G~~~~~~~--~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~----~v~picLp~~~~~~~~~~~~~~~~v~  247 (355)
                      +|.+++...  ...+.+.|+++++||+|+..++.||||||||++|+.|++    .++|||||....   ....+..++++
T Consensus       376 ~G~~~~~~~~~~~~~~~~V~~ii~Hp~Y~~~~~~nDIALlkL~~~v~~~~~~~~~v~PicLp~~~~---~~~~g~~~~v~  452 (565)
T 2xrc_A          376 TTVVDWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPY---LFQPNDTCIVS  452 (565)
T ss_dssp             C-------------CEEEEEEEEECTTCCTTTCTTCCEEEEECCCSSSSCSCCTTCCCCBCCSCTT---SSCTTCEEEEE
T ss_pred             EEEeeccCCCCCccEEEEEEEEEeCCCCCCCcccccceeeeeccccccccccccceeeeecCCccc---ccCCCCEEEEE
Confidence            998876543  345778999999999999999999999999999999864    689999997653   34567889999


Q ss_pred             EeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeee-CCeEEEEEEEE
Q psy2626         248 GWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVS  326 (355)
Q Consensus       248 GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-~~~~~lvGI~S  326 (355)
                      |||.+..+. .+..|+++.+++++.  |+..|..  ......||||+...++.++|+|||||||++.. +++|+|+||+|
T Consensus       453 GWG~t~~~~-~~~~L~~~~v~i~~~--C~~~~~~--~~~~~~~iCAg~~~g~~d~C~GDSGGPLv~~~~~~~~~lvGIvS  527 (565)
T 2xrc_A          453 GWGREKDNE-RVFSLQWGEVKLISN--CSKFYGN--RFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVS  527 (565)
T ss_dssp             C--------------CEEEEEECSC--THHHHTT--SCCTTTEEEEEEC----------CCCEEEEECTTCCEEEEEEEC
T ss_pred             eCccCCCCC-ccceeeEEeeeehHH--hHHhhcc--CcCCCceEEeCCCCCCCccCCCccccceEEEeCCCcEEEEEEEe
Confidence            999987644 677899999999974  9988754  23345599999876668999999999999975 57899999999


Q ss_pred             eCCCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         327 YGKKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       327 ~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      ||..|+..+.|+|||||++|++||+++|.
T Consensus       528 ~G~~C~~~~~PgVYTrVs~y~~WI~~~i~  556 (565)
T 2xrc_A          528 WGENCGKPEFPGVYTKVANYFDWISYHVG  556 (565)
T ss_dssp             C------CCCCEEEEEGGGGHHHHHHHC-
T ss_pred             eCCCCCCCCCCEEEEEHHHHHHHHHHHhc
Confidence            99999988899999999999999999873

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=100.00  E-value=2.5e-51  Score=378.95  Aligned_cols=229  Identities=19%  Similarity=0.346  Sum_probs=194.0

Q ss_pred             CCCCCCcCCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEec
Q psy2626          96 ECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVG  175 (355)
Q Consensus        96 ~CG~~~~~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G  175 (355)
                      .||+..       ..|.++..++|||||+|++..        ..++|+||||+++||||||||+..  .   ..+.|++|
T Consensus        89 ~cg~~~-------~~G~~a~~~~~Pw~v~l~~~~--------~~~~CgGtLIs~~~VLTAAHC~~~--~---~~~~V~~G  148 (317)
T 3h5c_B           89 ACGVLT-------SEKRAPDLQDLPWQVKLTNSE--------GKDFCGGVIIRENFVLTTAKCSLL--H---RNITVKTY  148 (317)
T ss_dssp             CCCCCS-------CCCSSCCTTCCTTEEEEECSS--------SCEEEEEEEEETTEEEECHHHHHS--C---SSCEEEEC
T ss_pred             cccccc-------cccccCccCCCCcEEEEeccC--------CceeeeeEEeeCCEEEEChHhcCc--C---CceEEEEe
Confidence            577653       138999999999999997532        257899999999999999999964  1   35789999


Q ss_pred             cccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCC
Q psy2626         176 SIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFR  255 (355)
Q Consensus       176 ~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~  255 (355)
                      .++..  ...+.+.|+++++||+|+..+..||||||||++|+.|+++++|||||...........+..++++|||.  ..
T Consensus       149 ~~~~~--~~~~~~~v~~i~~Hp~y~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~--~~  224 (317)
T 3h5c_B          149 FNRTS--QDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NG  224 (317)
T ss_dssp             TTSCT--TSCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCTTTSCCCCBCCCHHHHHHTTTTTSCEEEEBCCT--TC
T ss_pred             eecCC--CCcEEEEeeEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceeCCCcccccccccCCCeEEEEecCC--CC
Confidence            88764  356889999999999999988899999999999999999999999997542212345688999999998  33


Q ss_pred             CCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCC
Q psy2626         256 GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVG  335 (355)
Q Consensus       256 ~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~  335 (355)
                      +..+..|+++.+++++.++|+..+..   .+.++||||+...   ..|.|||||||++..+++|+|+||+|||. |+..+
T Consensus       225 ~~~~~~L~~~~v~~~~~~~C~~~~~~---~~~~~~~Ca~~~~---~~~~gDsGgPl~~~~~~~~~l~Gi~S~g~-~~~~~  297 (317)
T 3h5c_B          225 TDLGNSLTTRPVTLVEGEECGQVLNV---TVTTRTYCERSSV---AAMHWMDGSVVTREHRGSWFLTGVLGSQP-VGGQA  297 (317)
T ss_dssp             CSSSCCCBCCEEEEECHHHHHHHHTC---CCCTTEEEEECSC---CCCCCCTTCEEEEEETTEEEEEEEECCCC-SSCCT
T ss_pred             CCCCccceEEEEEEECHHHHhhhhcC---cCCCceeECCCCC---CCcCCCCCCCEEEecCCEEEEEEEEEECC-CCCCC
Confidence            44678899999999999999998753   6889999998633   46789999999999999999999999985 66677


Q ss_pred             CCcEEEeCcccHHHHHhHhC
Q psy2626         336 FPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       336 ~p~vyt~V~~y~~WI~~~i~  355 (355)
                      .|+|||||+.|++||+++|+
T Consensus       298 ~p~vyt~V~~y~~WI~~~i~  317 (317)
T 3h5c_B          298 HMVLVTKVSRYSLWFKQIMN  317 (317)
T ss_dssp             TEEEEEEGGGCHHHHHHHHC
T ss_pred             cceEEEEhHHhHHHHHHHhC
Confidence            89999999999999999985

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=100.00  E-value=1.3e-50  Score=410.01  Aligned_cols=240  Identities=34%  Similarity=0.658  Sum_probs=202.8

Q ss_pred             CCCCCCCcCC---CCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceE
Q psy2626          95 NECGVNAFNS---SKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYI  171 (355)
Q Consensus        95 ~~CG~~~~~~---~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~  171 (355)
                      ..||+.....   ..||+||.+|.+++|||||+|....        ..++||||||+++||||||||+...  .....+.
T Consensus       546 ~~CG~~~~~~~~~~~RIvGG~~a~~~~~PW~VsL~~~~--------~~~~CGGSLIs~~wVLTAAHCv~~~--~~~~~~~  615 (791)
T 4dur_A          546 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRF--------GMHFCGGTLISPEWVLTAAHCLEKS--PRPSSYK  615 (791)
T ss_dssp             CCTTCCSSCCCCCCTTCTTCEECCTTSSTTEEEEECTT--------SCEEEEEEEEETTEEEECGGGGSSC--CCGGGCE
T ss_pred             cCcCCcccccccCCCceECCEECCCCCCCeEEEEEecC--------CCeEEEEEEEeCCEEEECHHHcCCc--CCCceEE
Confidence            3699865322   3699999999999999999996432        2588999999999999999999752  2235678


Q ss_pred             EEeccccccCC-CCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEec
Q psy2626         172 VHVGSIDLEDT-SSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWG  250 (355)
Q Consensus       172 v~~G~~~~~~~-~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG  250 (355)
                      |++|.++.... ...+.+.|.++++||.+      ||||||||++|+.|+++|+|||||....   ....+..++++|||
T Consensus       616 V~lG~~~~~~~~~~~q~~~V~~i~~hp~~------nDIALLkL~~pv~~s~~V~PIcLP~~~~---~~~~g~~~~vsGWG  686 (791)
T 4dur_A          616 VILGAHQEVNLEPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPNY---VVADRTECFITGWG  686 (791)
T ss_dssp             EEESCCBSSSCCTTCEEEEEEEEEECTTC------CSCEEEEESSCCCCCSSCCCCBCCCTTC---CCCTTCEEEEEECC
T ss_pred             EEeccccccCCCCccEEEEEEEEECCCCC------CceEEEEecCccccCCceeeeeccCccc---ccCCCCEEEEEEeC
Confidence            99999876543 45688999999999974      8999999999999999999999997653   34567889999999


Q ss_pred             cCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC
Q psy2626         251 STVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK  330 (355)
Q Consensus       251 ~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~  330 (355)
                      .+.... .+..|+++.+++++.+.|+.... ....+.++||||+...++.++|+|||||||++..+++|+|+||+|||.+
T Consensus       687 ~t~~~~-~s~~L~~~~v~ii~~~~C~~~~~-~~~~i~~~~iCAg~~~gg~daC~GDSGGPLv~~~~~~~~LvGIvS~G~g  764 (791)
T 4dur_A          687 ETQGTF-GAGLLKEAQLPVIENKVCNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLG  764 (791)
T ss_dssp             CC---C-CTTBCEEEEEEEECHHHHTSTTT-TTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEEETTEEEEEEECCTTTC
T ss_pred             CCCCCC-CCCeeEEEEEEEeCHHHhhcccc-cCCCCCCCeEEeccCCCCCCCCCCCcccceEEEeCCeEEEEEEEEeCCC
Confidence            987443 67889999999999999987532 1246889999999877788999999999999999999999999999999


Q ss_pred             CCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         331 CAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       331 C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      |+..+.|+|||||+.|++||+++|+
T Consensus       765 C~~~~~PgVYTrVs~y~dWI~~~i~  789 (791)
T 4dur_A          765 CARPNKPGVYVRVSRFVTWIEGVMR  789 (791)
T ss_dssp             CBBTTBCEEEEEGGGTHHHHHHHHH
T ss_pred             CCCCCCCeEEEEHHHHHHHHHHHHH
Confidence            9988899999999999999999984

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=100.00  E-value=3.2e-47  Score=372.39  Aligned_cols=239  Identities=26%  Similarity=0.450  Sum_probs=185.0

Q ss_pred             CCCCCCcCCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEec
Q psy2626          96 ECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVG  175 (355)
Q Consensus        96 ~CG~~~~~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G  175 (355)
                      .||....       .+..+.+++|||||+|++...     ....++||||||+++||||||||+...  .....+.|++|
T Consensus       210 ~CG~~~~-------~~~~~~~~~~Pw~v~l~~~~~-----~~~~~~CgGsLIs~~~VLTAAHC~~~~--~~~~~~~v~~G  275 (497)
T 1rrk_A          210 LCGMVWE-------HRKGTDYHKQPWQAKISVIRP-----SKGHESCMGAVVSEYFVLTAAHCFTVD--DKEHSIKVSVG  275 (497)
T ss_dssp             CTTCCCC-------CTTCCHHHHSTTEEEEEECC-------CCCEEEEEEECSSSEEEECGGGCCTT--CCGGGEEEEET
T ss_pred             CCCCCCC-------CCCCCCccccCcEEEEEEEcC-----CCCCceeEEEEecCCEEEECHHhCCCC--CCceEEEEEeC
Confidence            7998631       245678899999999986432     123589999999999999999999752  22346789999


Q ss_pred             cccccCCCCcEEEEEeeeEeCCCCCCC---------CCCCCeEEEEeCCCCCCCCCccccccCCCCCcc--ccccCCCce
Q psy2626         176 SIDLEDTSSGVSIEIERPIIHEQYTSA---------RKLNDIALFRLREDAPLSDLIQPICLPYDTNLR--SELFERKTP  244 (355)
Q Consensus       176 ~~~~~~~~~~~~~~v~~i~~hp~y~~~---------~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~--~~~~~~~~~  244 (355)
                      .+       .+.+.|+++++||+|+..         ...||||||||++|+.|+++|+|||||......  .....+..+
T Consensus       276 ~~-------~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~  348 (497)
T 1rrk_A          276 GE-------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTC  348 (497)
T ss_dssp             TC-------SSCEEEEEEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCH
T ss_pred             Cc-------cceeeeEEEEeCCCccccccccccccccCCCcEEEEEECCCCcCCCCeeeeeCCCCCccccccccCCCCch
Confidence            74       246789999999999864         567999999999999999999999999643100  013457778


Q ss_pred             EEEEeccCCCCC-------CCCccceEEEEeeeC---hhHHHhhhhc---C------CCCCCCCeEEecccCC--CCCCC
Q psy2626         245 FVAGWGSTVFRG-------PLSPKLRHVQISVVD---NPKCRQIFSN---Y------GATINENILCAGVLSG--GKDSC  303 (355)
Q Consensus       245 ~v~GwG~~~~~~-------~~~~~l~~~~~~~~~---~~~C~~~~~~---~------~~~~~~~~~Ca~~~~~--~~~~C  303 (355)
                      ++.|||......       ..+..|+++.+++++   .+.|+..+..   +      ...++++||||+...+  +.++|
T Consensus       349 ~~~g~g~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~~~~C  428 (497)
T 1rrk_A          349 QQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTC  428 (497)
T ss_dssp             HHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCC
T ss_pred             hcccccccCCccccceeeccCCCcceeeeEEEecCcccchhhhhhhhcccccccccccccCCCCeEEeCCCCCCCCCcCC
Confidence            888998764321       145689999999998   7899875321   1      1247899999987542  47899


Q ss_pred             cCCCCCcceeeeCCeEEEEEEEEeCC--CCC----CCCCCc----EEEeCcccHHHHHhHhC
Q psy2626         304 GGDSGGPLMYPLDTKYYIIGVVSYGK--KCA----EVGFPG----VYTRVTNYIQWIADNIS  355 (355)
Q Consensus       304 ~GDsGgPL~~~~~~~~~lvGI~S~g~--~C~----~~~~p~----vyt~V~~y~~WI~~~i~  355 (355)
                      +|||||||++..+++|+|+||+|||.  .|+    ..+.|+    |||||++|++||+++|+
T Consensus       429 ~GDSGGPL~~~~~~~~~l~GIvS~g~~~~C~~~~~~~~~P~~~r~vyt~V~~~~~WI~~~~~  490 (497)
T 1rrk_A          429 RGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ  490 (497)
T ss_dssp             GGGTTCEEEEEETTEEEEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTT
T ss_pred             CCCCCCeeEEEeCCEEEEEEEEEecCCCCCCCccccCCCCCccceeeeeHHHHHHHHHHHhC
Confidence            99999999999889999999999998  698    456785    99999999999999884

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=100.00  E-value=1.2e-47  Score=376.39  Aligned_cols=239  Identities=23%  Similarity=0.443  Sum_probs=180.8

Q ss_pred             CCCCCCCcCCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEe
Q psy2626          95 NECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHV  174 (355)
Q Consensus        95 ~~CG~~~~~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~  174 (355)
                      ..||..       .++|.++.+++|||||+|.+.         ..++||||||+++||||||||+...  .....+.|++
T Consensus       218 ~~CG~~-------~~~g~~a~~~~~Pw~v~l~~~---------~~~~CgGsLIs~~~VLTAAHC~~~~--~~~~~~~V~~  279 (509)
T 2odp_A          218 TICGVG-------NMSANASDQERTPWHVTIKPK---------SQETCRGALISDQWVLTAAHCFRDG--NDHSLWRVNV  279 (509)
T ss_dssp             CCSSCC-------CCCTTSCHHHHCTTEEEEEC-------------CEEEEECSSSEEEECGGGC----------CEEEE
T ss_pred             cccCCc-------CCCCCccccCCCCcEEEEEeC---------CCcEEEEEEEcCCEEEEcHHHcCCC--CCcceEEEEe
Confidence            379976       357899999999999999652         1478999999999999999999752  1224578999


Q ss_pred             ccccccCCCCcEEEEEeeeEeCCCCCCC---------CCCCCeEEEEeCCCCCCCCCccccccCCCCCcc--ccccCCCc
Q psy2626         175 GSIDLEDTSSGVSIEIERPIIHEQYTSA---------RKLNDIALFRLREDAPLSDLIQPICLPYDTNLR--SELFERKT  243 (355)
Q Consensus       175 G~~~~~~~~~~~~~~v~~i~~hp~y~~~---------~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~--~~~~~~~~  243 (355)
                      |.++..   ..+.+.|+++++||+|+..         ...||||||||++|+.|+++|+|||||......  .....+..
T Consensus       280 G~~~~~---~~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~g~~  356 (509)
T 2odp_A          280 GDPKSQ---WGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGST  356 (509)
T ss_dssp             CCTTCT---TCEEECEEEEEECTTCCTTTTGGGTCCCCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCC
T ss_pred             CCcccC---CCceeeeEEEEECCCCccccccccccccccCCCeEEEEECCcccCCCCcccccCCCCcccchhhccCCCCc
Confidence            998743   4578999999999999874         567999999999999999999999999643100  01245777


Q ss_pred             eEEEEeccCCCCCCC----CccceEEEEeee---ChhHHHhhhhc----C------CCCCCCCeEEecccCCCCCCCcCC
Q psy2626         244 PFVAGWGSTVFRGPL----SPKLRHVQISVV---DNPKCRQIFSN----Y------GATINENILCAGVLSGGKDSCGGD  306 (355)
Q Consensus       244 ~~v~GwG~~~~~~~~----~~~l~~~~~~~~---~~~~C~~~~~~----~------~~~~~~~~~Ca~~~~~~~~~C~GD  306 (355)
                      +++.|||........    ....+++.+.++   +.+.|+..+..    +      +..++++||||+. .++.++|+||
T Consensus       357 ~~~~g~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~iCag~-~~~~~~C~GD  435 (509)
T 2odp_A          357 CRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGT-QEDESPCKGE  435 (509)
T ss_dssp             HHHHHHHHSCSSEEEEEEECTTSCEEEEEEECTHHHHHHHHGGGGCTTTCTTCSSGGGTSCTTEEEECC-TTCCCCCGGG
T ss_pred             cccccccccccccceeeeecccCceeeEEEecCccHHHHHHHhhcccccccccccccccccCCEEEeCC-CCCCcccCCC
Confidence            888999976532100    011234556554   68999986421    1      1357899999996 3478999999


Q ss_pred             CCCcceeeeCCeEEEEEEEEeCC--CCC---------CCCCC------cEEEeCcccHHHHHhHhC
Q psy2626         307 SGGPLMYPLDTKYYIIGVVSYGK--KCA---------EVGFP------GVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       307 sGgPL~~~~~~~~~lvGI~S~g~--~C~---------~~~~p------~vyt~V~~y~~WI~~~i~  355 (355)
                      |||||++..+++|+|+||+|||.  .|+         ....|      ++||||++|++||+++|+
T Consensus       436 SGGPL~~~~~~~~~l~GIvS~G~~~~C~~~~~~~~~~~~~~Pg~~y~~~vyt~V~~~~~WI~~~~~  501 (509)
T 2odp_A          436 SGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLG  501 (509)
T ss_dssp             TTCEEEEEETTEEEEEEEEEEESCCTTC-----CCCCCCCTTCSSCCCEEEEEGGGCHHHHHHHHT
T ss_pred             ccCceEEEECCeEEEEEEEEEcCCCCCCCcccccccccCcccCCCCCCceeeeHHHHhHHHHHHhC
Confidence            99999999999999999999997  597         24556      599999999999999874

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=100.00  E-value=7.2e-45  Score=371.94  Aligned_cols=239  Identities=25%  Similarity=0.428  Sum_probs=183.6

Q ss_pred             CCCCCCcCCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEec
Q psy2626          96 ECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVG  175 (355)
Q Consensus        96 ~CG~~~~~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G  175 (355)
                      .||..       ..+|.++..++|||||.|.+...     ....++|+||||+++||||||||+...  .....+.|++|
T Consensus       452 ~CG~~-------~~~~~~~~~~~~Pw~~~v~~~~~-----~~~~~~CgGsLIs~~~VLTAAHC~~~~--~~~~~~~V~~G  517 (741)
T 3hrz_D          452 LCGMV-------WEHRKGTDYHKQPWQAKISVIRP-----SKGHESCMGAVVSEYFVLTAAHCFTVD--DKEHSIKVSVG  517 (741)
T ss_dssp             STTCC-------CCC---CCTTTCTTEEEEEECCC-----C-----EEEEECSSSEEEECGGGCC-------CCEEEEET
T ss_pred             ccccc-------cccCCcccccCcCCeEEEEEEeC-----CCCCCEEEEEEecCCEEEEchhhcccc--CCcceEEEEeC
Confidence            67764       23589999999999999977421     223579999999999999999999752  22346789999


Q ss_pred             cccccCCCCcEEEEEeeeEeCCCCCCCC---------CCCCeEEEEeCCCCCCCCCccccccCCCCCc--cccccCCCce
Q psy2626         176 SIDLEDTSSGVSIEIERPIIHEQYTSAR---------KLNDIALFRLREDAPLSDLIQPICLPYDTNL--RSELFERKTP  244 (355)
Q Consensus       176 ~~~~~~~~~~~~~~v~~i~~hp~y~~~~---------~~~DIALl~L~~~v~~~~~v~picLp~~~~~--~~~~~~~~~~  244 (355)
                      ...       +.+.|+++++||+|+...         +.||||||||++|+.|+++|+|||||.....  ......+..+
T Consensus       518 ~~~-------~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALlkL~~pv~~s~~v~picLp~~~~~~~~~~~~~~~~~  590 (741)
T 3hrz_D          518 GEK-------RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTC  590 (741)
T ss_dssp             TCS-------CCEEEEEEEECTTCCTTTTGGGTCSCCCTTCCEEEEESSCCCCCSSCCCCBCTTBHHHHHHTTCCTTCCH
T ss_pred             CCc-------eEEEEEEEEECCCCCcccccccccCCccCCcEEEEEECCcCcCCCCccccccCCcccccchhccCCCCcc
Confidence            643       567899999999998654         6799999999999999999999999954321  0123567788


Q ss_pred             EEEEeccCCCCC-------CCCccceEEEEeeeC---hhHHHhhhhcC---------CCCCCCCeEEecccCC--CCCCC
Q psy2626         245 FVAGWGSTVFRG-------PLSPKLRHVQISVVD---NPKCRQIFSNY---------GATINENILCAGVLSG--GKDSC  303 (355)
Q Consensus       245 ~v~GwG~~~~~~-------~~~~~l~~~~~~~~~---~~~C~~~~~~~---------~~~~~~~~~Ca~~~~~--~~~~C  303 (355)
                      +++|||.+....       ..+..|+...+++++   ...|...+...         ...++++||||+...+  +.++|
T Consensus       591 ~~~gwg~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~i~~~~lCag~~~~~~~~~~C  670 (741)
T 3hrz_D          591 QQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTC  670 (741)
T ss_dssp             HHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSSGGGTSCTTEEEEESSSSSCCCCCC
T ss_pred             ccccccccccccccceeccccccccccceeEeecCcccchhhhhhhhccccccccccccccCCCeEecCCcCCCCCCCcC
Confidence            999999876432       136679999999998   89999854311         2358899999987652  57899


Q ss_pred             cCCCCCcceeeeCCeEEEEEEEEeCC--CCCC---CCCC-----cEEEeCcccHHHHHhHhC
Q psy2626         304 GGDSGGPLMYPLDTKYYIIGVVSYGK--KCAE---VGFP-----GVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       304 ~GDsGgPL~~~~~~~~~lvGI~S~g~--~C~~---~~~p-----~vyt~V~~y~~WI~~~i~  355 (355)
                      +|||||||++..+++|+|+||+|||.  .|+.   .+.|     ++||||+.|++||+++|+
T Consensus       671 ~GDSGGPL~~~~~~~~~lvGIvS~G~~~~C~~~~~~~~p~~~~~~vyt~V~~~~~WI~~~i~  732 (741)
T 3hrz_D          671 RGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ  732 (741)
T ss_dssp             GGGTTCEEEEEETTEEEEEEEEEEESSCCCC------CCCTTCEEEEEEGGGSHHHHHHHTT
T ss_pred             cCcccCceEEeeCCeEEEEEEEeecCCcccCCcccccCCCCCccceEEEhHHhHHHHHHHhc
Confidence            99999999999999999999999998  7988   6789     999999999999999985

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=100.00  E-value=1.8e-43  Score=308.47  Aligned_cols=206  Identities=16%  Similarity=0.204  Sum_probs=160.6

Q ss_pred             CCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCC-cCceEEEeccccccCC
Q psy2626         104 SSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE-YEPYIVHVGSIDLEDT  182 (355)
Q Consensus       104 ~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~-~~~~~v~~G~~~~~~~  182 (355)
                      ...||+||.+     |||.+.+....        ..++|+||||+++||||||||+.+..... .....|++|.++....
T Consensus         7 ~~~rI~~g~~-----~P~~~~~~~~~--------~~~~CgGtLIs~~~VLTAAHCv~~~~~~~~~~~~~v~~G~~~~~~~   73 (215)
T 1p3c_A            7 GRTKVANTRV-----APYNSIAYITF--------GGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAV   73 (215)
T ss_dssp             CCEECSCTTS-----TTGGGEEEEEC--------SSCEEEEEEEETTEEEECHHHHEETTTTEECCCCEEEETCBTTBCT
T ss_pred             CCEEecCCCc-----CCCeEEEEEEc--------CCceEEEEEEeCCEEEECccEeccCCCCccccceEEEEcccCCCCC
Confidence            3468888874     68833222221        14789999999999999999996522111 1223899999887644


Q ss_pred             CCcEEEEEeeeEeCCCCC-CCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCcc
Q psy2626         183 SSGVSIEIERPIIHEQYT-SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK  261 (355)
Q Consensus       183 ~~~~~~~v~~i~~hp~y~-~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~  261 (355)
                      .  +.+.|+++++||+|+ .....||||||||++|  |+++++|||||...     ...+..++++|||.+.... .+..
T Consensus        74 ~--~~~~v~~i~~hp~y~~~~~~~~DiAll~L~~~--~~~~v~pi~l~~~~-----~~~g~~~~~~Gwg~~~~~~-~~~~  143 (215)
T 1p3c_A           74 N--GSANMTEFYVPSGYINTGASQYDFAVIKTDTN--IGNTVGYRSIRQVT-----NLTGTTIKISGYPGDKMRS-TGKV  143 (215)
T ss_dssp             T--CCEEEEEEECCHHHHHHCCGGGCCEEEEESSC--HHHHHCCCCBCCCS-----CCTTCEEEEEECCHHHHHH-HSSC
T ss_pred             C--CeEEEEEEEeCCccccCCCcccCEEEEEECCC--CcccceeeecCCCc-----ccCCCeEEEecCCCCCccc-ccce
Confidence            3  378899999999994 5667799999999996  67889999999754     2578899999999765322 4567


Q ss_pred             ceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEE
Q psy2626         262 LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT  341 (355)
Q Consensus       262 l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt  341 (355)
                      |+++.+++++.+.|...+.                  +.++|.|||||||++..+   +|+||+|||..|+  ..|++||
T Consensus       144 l~~~~~~~~~~~~c~~~~~------------------~~~~C~GDSGgPl~~~~g---~lvGi~S~g~~c~--~~p~v~t  200 (215)
T 1p3c_A          144 SQWEMSGSVTREDTNLAYY------------------TIDTFSGNSGSAMLDQNQ---QIVGVHNAGYSNG--TINGGPK  200 (215)
T ss_dssp             CCEEEEEECCEECSSEEEE------------------CCCCCTTCTTCEEECTTS---CEEEECCEEEGGG--TEEEEEB
T ss_pred             echhccCccCcccchheee------------------ccccCCCCCCCeeEccCC---eEEEEEecccCCC--ccCceeE
Confidence            8999999999998876431                  478999999999998532   8999999998887  5799999


Q ss_pred             eCcccHHHHHhHhC
Q psy2626         342 RVTNYIQWIADNIS  355 (355)
Q Consensus       342 ~V~~y~~WI~~~i~  355 (355)
                      ||++|++||++++.
T Consensus       201 ~v~~~~~WI~~~~~  214 (215)
T 1p3c_A          201 ATAAFVEFINYAKA  214 (215)
T ss_dssp             CCHHHHHHHHHHHT
T ss_pred             echHHHHHHHHHhc
Confidence            99999999999863

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=100.00  E-value=1.7e-35  Score=237.56  Aligned_cols=129  Identities=31%  Similarity=0.594  Sum_probs=111.2

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.+++|||||+|.+..        ..++|+||||+++||||||||+..      ....|++|.++.... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~--------~~~~CgGsLIs~~~VLTAAHC~~~------~~~~v~~G~~~~~~~~~~~~   66 (131)
T 1yph_C            1 IVNGEEAVPGSWPWQVSLQDKT--------GFHFCGGSLINENWVVTAAHCGVT------TSDVVVAGEFDQGSSSEKIQ   66 (131)
T ss_dssp             CBTCEECCTTSSTTEEEEECTT--------SCEEEEEEEEETTEEEECGGGCCC------TTSEEEESCSBTTCSSSCCE
T ss_pred             CCCCEECCCCCcCcEEEEEeCC--------CCEEEEEEEeeCCEEEECHHHCCC------CCeEEEEeEccCCCCCCceE
Confidence            7899999999999999996531        247899999999999999999864      346799999887543 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCC
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTV  253 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~  253 (355)
                      .+.|+++++||+|+.....||||||||++|+.|+++++|||||....   ....+..++++|||.+.
T Consensus        67 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~---~~~~g~~~~v~GWG~t~  130 (131)
T 1yph_C           67 KLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASD---DFAAGTTCVTTGWGLTR  130 (131)
T ss_dssp             EEEEEEEEECTTCCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTC---CCCTTCEEEEEESCCSC
T ss_pred             EEEEEEEEeCCCCCCCCCCCCEEEEEECCcccCCCcCcceECCCccc---CCCCCCEEEEEcCCccC
Confidence            89999999999999988899999999999999999999999997653   34578899999999864

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=100.00  E-value=2.5e-35  Score=242.68  Aligned_cols=144  Identities=33%  Similarity=0.654  Sum_probs=125.6

Q ss_pred             CCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC---CCCccceEEEEeeeChhHHH
Q psy2626         200 TSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG---PLSPKLRHVQISVVDNPKCR  276 (355)
Q Consensus       200 ~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~---~~~~~l~~~~~~~~~~~~C~  276 (355)
                      +..++.||||||||++|+.|+++|+|||||....     ..+..++++|||.+...+   ..+..|+++.+++++.+.|+
T Consensus         2 d~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~-----~~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~~~C~   76 (152)
T 2pka_B            2 DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEP-----ELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCA   76 (152)
T ss_dssp             CCSBCTTCCEEEEESSCCCCCSSCCCCCCCSSCC-----CTTCEEEEEESSCSSCCSSCCCCCSBCEEEEEEEECHHHHH
T ss_pred             CCCCCCCCEEEEEECCCCcCCCCEEeEECCCCCC-----CCCCEEEEEecccccCCCCcCCCCccceEEEeEEcCHHHhh
Confidence            4556779999999999999999999999997643     357889999999987655   46788999999999999999


Q ss_pred             hhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeC-CCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         277 QIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       277 ~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      ..|..   .+.++||||+...++.++|+|||||||++.  +  +|+||+||| ..|+..+.|+|||||++|++||+++|+
T Consensus        77 ~~~~~---~~~~~~iCa~~~~~~~~~C~GDsGgPL~~~--g--~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~  149 (152)
T 2pka_B           77 DAHPD---KVTESMLCAGYLPGGKDTCMGDSGGPLICN--G--MWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT  149 (152)
T ss_dssp             HHCSS---BCCTTEEEEECTTSSCBCCTTCTTCEEEET--T--EEEEEECCCCSSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             hhhcC---CCCCCEEeeccCCCCCcccCCccccceEEC--C--EEEEEEecCCCCCCCCCCCeEEEEHHHHHHHHHHHhc
Confidence            88753   578999999876557899999999999995  2  599999999 779988899999999999999999873

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=100.00  E-value=9.2e-35  Score=253.39  Aligned_cols=185  Identities=16%  Similarity=0.236  Sum_probs=133.8

Q ss_pred             CCCCccceEEeceeeeccccCCCCceeeeEEEEe---CCEEEeeccccCCCCCCC-cCceEEEeccccccCCCCcEEEEE
Q psy2626         115 ERGQWPWMAAIGFKIRRRRANGKPEWMCGGALIT---KRYVLTAAHCVSPDTTGE-YEPYIVHVGSIDLEDTSSGVSIEI  190 (355)
Q Consensus       115 ~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs---~~~VLTAAhCv~~~~~~~-~~~~~v~~G~~~~~~~~~~~~~~v  190 (355)
                      .+++||||+.|++...      ...++|+||||+   ++||||||||+....... ...+.|++|.++...  ....+.|
T Consensus         2 ~~~~~p~~g~l~~~~~------~~~~~CgGslI~s~s~~~VLTAAHC~~~~~~~~~~~~~~v~~G~~~~~~--~~~~~~v   73 (218)
T 3cp7_A            2 NPADSPHIGKVFFSTN------QGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAYDYGES--EHGVWAA   73 (218)
T ss_dssp             -CTTCTTEEEEEEEET------TEEEEEEEEEBCCTTSCEEEECGGGTBCCTTCBBCEEEEEEETCSSSCC--TTCCEEE
T ss_pred             CCCCCceEEEEEEEcC------CCCeEEEEEEEecCCCCEEEEChHhcCcCCCCeeecCEEEECcccCCCC--CccEEEE
Confidence            3679999999987531      235899999999   999999999996521111 134678888776532  2346789


Q ss_pred             eeeEeCCCCCC-CCCCCCeEEEEeCCC--CCCCCCcc-ccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         191 ERPIIHEQYTS-ARKLNDIALFRLRED--APLSDLIQ-PICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       191 ~~i~~hp~y~~-~~~~~DIALl~L~~~--v~~~~~v~-picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      +++++||+|+. ....||||||||++|  +.|++.++ |++|+...      ..+..++++|||.+....  ...|    
T Consensus        74 ~~~~~hp~y~~~~~~~~DiAll~L~~~~~~~~~~~v~~~~~l~~~~------~~g~~~~v~GwG~~~~~~--~~~l----  141 (218)
T 3cp7_A           74 EELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQ------PRGQYYSAYGYPAAAPFN--GQEL----  141 (218)
T ss_dssp             EEEEECHHHHHHCCGGGCCEEEEECCBTTBCHHHHHSCCBCBCCSC------CSSCEEEEEECCCSTTCC--SSSC----
T ss_pred             EEEEECcccccCCCCcCCEEEEEEeCCCCcChhHhcCcccceeecC------CCCCEEEEEeCCCCCCCC--Ccee----
Confidence            99999999974 456799999999999  88888899 99998532      357789999999875311  1122    


Q ss_pred             EeeeChhHHHhhh-hcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCC
Q psy2626         267 ISVVDNPKCRQIF-SNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE  333 (355)
Q Consensus       267 ~~~~~~~~C~~~~-~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~  333 (355)
                            ..|...+ ..........|+|+.        |.|||||||++..+++++|+||+|||.+|+.
T Consensus       142 ------~~C~~~~~~~~~~~~~~~~~Ca~--------~~GDSGGPlv~~~~g~~~lvGIvS~G~gc~~  195 (218)
T 3cp7_A          142 ------HSCHGTATNDPMGSSTQGIPCNM--------TGGSSGGPWFLGNGTGGAQNSTNSYGYTFLP  195 (218)
T ss_dssp             ------EEEEEECEECTTSSSCEEEECCC--------CTTCTTCEEEESSSSSSCEEEECCEEETTEE
T ss_pred             ------eEeeeeEEcCCCCCceEEecCCC--------CCCCcCCeeEEccCCCeEEEEEEccccCCCC
Confidence                  3454321 110011233789983        5699999999986677899999999988864

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.98  E-value=3e-32  Score=244.82  Aligned_cols=197  Identities=15%  Similarity=0.249  Sum_probs=140.5

Q ss_pred             cCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeee
Q psy2626         114 SERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERP  193 (355)
Q Consensus       114 a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i  193 (355)
                      +..++|||++.+.+...    .....++|+|+||+++||||||||+.... .....+.|++|.++....... .+.+.++
T Consensus        12 ~~~~~~P~~~~v~l~~~----~~~g~~~CgG~lI~~~~VLTAAHCv~~~~-~~~~~i~V~~G~~~~~~~~~g-~~~~~~i   85 (268)
T 1wcz_A           12 TDTTNGHYAPVTYIQVE----APTGTFIASGVVVGKDTLLTNKHVVDATH-GDPHALKAFPSAINQDNYPNG-GFTAEQI   85 (268)
T ss_dssp             SCTTSGGGTTEEEEEEE----C-CCEEEEEEEECSSSEEEECHHHHGGGT-TCGGGEEEEETCCBTTBCTTC-CEEEEEE
T ss_pred             cCCCCCCccEEEEEEEE----cCCCCEEEEEEEEECCEEEEChhhCCCcc-CCcceEEEEecccCcccccCC-cEEEEEE
Confidence            56789999987554432    12235899999999999999999997521 112347899998776433222 4678888


Q ss_pred             EeCCCCCCCCCCCCeEEEEeCCCC---CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeee
Q psy2626         194 IIHEQYTSARKLNDIALFRLREDA---PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVV  270 (355)
Q Consensus       194 ~~hp~y~~~~~~~DIALl~L~~~v---~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~  270 (355)
                      +.|+.      .+|||||||++++   .|+..++|+||+...    ....+..++++|||....     ..++......+
T Consensus        86 ~~~~~------~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~----~~~~g~~v~v~Gwg~~~~-----~~~~~~~~g~i  150 (268)
T 1wcz_A           86 TKYSG------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNA----ETQVNQNITVTGYPGDKP-----VATMWESKGKI  150 (268)
T ss_dssp             EECSS------SSCCEEEEECCCTTSCCHHHHSCCCCBCCCS----SCCTTCEEEEEECCTTSS-----TTCEEEEEEEE
T ss_pred             ecCCC------CCcEEEEEecCcccccccccccceeeccccc----ccCCCCEEEEEECCCCCC-----CceEEeecceE
Confidence            88863      4899999999997   466789999998543    235688999999996532     22344333333


Q ss_pred             ChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHH
Q psy2626         271 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI  350 (355)
Q Consensus       271 ~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI  350 (355)
                      ..             +...++|.     +.++|+|||||||+..   .+.|+||+|||..|+. + +++|+ ++.|++||
T Consensus       151 ~~-------------~~~~~i~~-----~~~~c~GdSGGPLv~~---~g~lvGIvS~G~~~~~-~-~~~~~-~~~~~~wI  206 (268)
T 1wcz_A          151 TY-------------LKGEAMQY-----DLSTTGGNSGSPVFNE---KNEVIGIHWGGVPNEF-N-GAVFI-NENVRNFL  206 (268)
T ss_dssp             EE-------------EETTEEEE-----SBCCCTTCTTCEEECT---TSCEEEEEEEEETTTE-E-EEEEC-CHHHHHHH
T ss_pred             Ee-------------eCCCeEEE-----ecccCCCCccCeEEcc---CCEEEEEEeCCccCCc-c-eeEEc-CHHHHHHH
Confidence            21             22456775     4689999999999963   2369999999988864 2 55555 79999999


Q ss_pred             HhHhC
Q psy2626         351 ADNIS  355 (355)
Q Consensus       351 ~~~i~  355 (355)
                      +++|+
T Consensus       207 ~~~i~  211 (268)
T 1wcz_A          207 KQNIE  211 (268)
T ss_dssp             HHHCT
T ss_pred             HHHHH
Confidence            98874

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.98  E-value=1.1e-31  Score=242.05  Aligned_cols=197  Identities=15%  Similarity=0.252  Sum_probs=139.5

Q ss_pred             cCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeee
Q psy2626         114 SERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERP  193 (355)
Q Consensus       114 a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i  193 (355)
                      +..++|||++.+.+...    .....++|+|+||+++||||||||+.... .....+.|++|.++....... .+.+.++
T Consensus        12 ~~~~~~P~~~~v~i~~~----~~~~~~~C~G~lI~~~~VLTAAHCv~~~~-~~~~~i~V~~G~~~~~~~~~g-~~~~~~i   85 (274)
T 2o8l_A           12 TDTTNGHYAPVTYIQVE----APTGTFIASGVVVGKDTLLTNKHVVDATH-GDPHALKAFPSAINQDNYPNG-GFTAEQI   85 (274)
T ss_dssp             SSTTSGGGTTEEEEEEE----ETTEEEEEEEEEEETTEEEECHHHHHTTT-TCGGGEEEEETCCBTTBCTTC-CEEEEEE
T ss_pred             cCCCCCCcceEEEEEEE----cCCCCEEEEEEEEECCEEEEChhhCcccC-CCcceEEEEecccCcccccCc-cEEEEEE
Confidence            56788999977544322    11235899999999999999999997521 112347899998765433222 4678888


Q ss_pred             EeCCCCCCCCCCCCeEEEEeCCCC---CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeee
Q psy2626         194 IIHEQYTSARKLNDIALFRLREDA---PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVV  270 (355)
Q Consensus       194 ~~hp~y~~~~~~~DIALl~L~~~v---~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~  270 (355)
                      +.|+.      .+|||||||++++   .|+..++|+||+...    ....+..++++|||....     ..++......+
T Consensus        86 ~~~~~------~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~----~~~~g~~v~v~Gwg~~~~-----~~~~~~~~g~i  150 (274)
T 2o8l_A           86 TKYSG------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNA----ETQTNQNITVTGYPGDKP-----VATMWESKGKI  150 (274)
T ss_dssp             EECSS------SSCCEEEEECCCTTSCCTTTSSCCCEECCCT----TCCTTCEEEEEECCTTSS-----TTCEEEEEEEE
T ss_pred             EeCCC------CCcEEEEEecCcccccccccccccccccccc----cccCCCEEEEEECCCCCC-----CceEEecCceE
Confidence            98873      4899999999997   478899999998543    245788999999997532     11222222222


Q ss_pred             ChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHH
Q psy2626         271 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI  350 (355)
Q Consensus       271 ~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI  350 (355)
                      ..             +...++|.     +.++|+|||||||+..   .+.|+||+|||..|+. + +++|+ ++.|++||
T Consensus       151 ~~-------------~~~~~i~~-----~~~~c~GdSGGPLv~~---~g~lvGIvS~G~~~~~-~-~~~~~-~~~~~~wI  206 (274)
T 2o8l_A          151 TY-------------LKGEAMQY-----DLSTTGGNSGSPVFNE---KNEVIGIHWGGVPNEF-N-GAVFI-NENVRNFL  206 (274)
T ss_dssp             EE-------------EETTEEEE-----SCCCCTTCTTCEEECT---TSCEEEEEEEEETTTE-E-EEEEC-CHHHHHHH
T ss_pred             Ee-------------cCCCeEEe-----CcccCCCCchhheecc---CCeEEEEEeCcccCCC-C-ceEEe-cHHHHHHH
Confidence            11             12346665     4689999999999963   2469999999988864 2 45554 79999999


Q ss_pred             HhHhC
Q psy2626         351 ADNIS  355 (355)
Q Consensus       351 ~~~i~  355 (355)
                      ++.|+
T Consensus       207 ~~~i~  211 (274)
T 2o8l_A          207 KQNIE  211 (274)
T ss_dssp             HHHCT
T ss_pred             HHHHh
Confidence            98764

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=99.97  E-value=9.9e-32  Score=240.04  Aligned_cols=175  Identities=20%  Similarity=0.259  Sum_probs=115.5

Q ss_pred             ceeeeEEEEeC------CEEEeeccccCCCCCCCcCceEEEeccccccCC------------CCcEEEEEeeeEeCCCCC
Q psy2626         139 EWMCGGALITK------RYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT------------SSGVSIEIERPIIHEQYT  200 (355)
Q Consensus       139 ~~~C~GtLIs~------~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~------------~~~~~~~v~~i~~hp~y~  200 (355)
                      .|+|+||||++      +||||||||+.... .....+.|+++.......            .......+..++.|+.  
T Consensus        33 ~~~CGGSLI~~~~~~~~~~VLTAAHCv~~~~-~~~~~~~v~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~i~h~~--  109 (268)
T 1arb_A           33 TLACTGSLVNNTANDRKMYFLTAHHCGMGTA-STAASIVVYWNYQNSTCRAPNTPASGANGDGSMSQTQSGSTVKATY--  109 (268)
T ss_dssp             EEEEEEEEBCCTTCCCCCEEEEEGGGSCCSH-HHHHTCEEEESCCCSSCCCTTSGGGGSCCCCCCCCEEECEEEEEEE--
T ss_pred             ccEEeEEEEcCCCCCCCCEEEEcHHhCCCcc-CcceEEEEEeCCCCCccccccccccccccCCcceEEeccceEecCC--
Confidence            58999999998      69999999986410 011245677765322111            1111223777888983  


Q ss_pred             CCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCC-------CccceEEEEeeeChh
Q psy2626         201 SARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL-------SPKLRHVQISVVDNP  273 (355)
Q Consensus       201 ~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~-------~~~l~~~~~~~~~~~  273 (355)
                         ..||||||||++|+.                     .+..++++|||.+......       +..++++.+......
T Consensus       110 ---~~nDIALLrL~~~v~---------------------~~~~~~vsGWG~t~~~~~~~~~~~~~~~~l~~i~~~~~~~~  165 (268)
T 1arb_A          110 ---ATSDFTLLELNNAAN---------------------PAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTS  165 (268)
T ss_dssp             ---TTTTEEEEEESSCCC---------------------GGGCCEEBCEECCSCCCSCEEEEECGGGCSCEEEEECSCCE
T ss_pred             ---CCCceEEEEecCCCC---------------------CCCceEEeCcCccCCCCCcceeeccCCcccEEEEeeccccc
Confidence               459999999999752                     1235689999998754321       123455555444321


Q ss_pred             HHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC-CCCCC--CCCcEEEeCcccHH
Q psy2626         274 KCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAEV--GFPGVYTRVTNYIQ  348 (355)
Q Consensus       274 ~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~-~C~~~--~~p~vyt~V~~y~~  348 (355)
                      .  ..|   +..+.+.|+|++...+..++|+|||||||++.   .++|+||+|||. .|+..  ++|+|||||+.|.+
T Consensus       166 ~--~~~---~~~~~~~~iCag~~~~~gdtC~gdsGgPl~~~---~~~~~Gi~s~g~~~C~~~~~~~p~vyt~v~~~~~  235 (268)
T 1arb_A          166 F--VAW---GGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSP---EKRVLGQLHGGPSSCSATGTNRSDQYGRVFTSWT  235 (268)
T ss_dssp             E--ECT---TSSSCSSEEEEECCTTSCCCCTTCTTCEEECT---TSCEEEEEEECSCCTTCCGGGSEEEEEEHHHHHH
T ss_pred             c--ccc---cccccCCeEEEeeecCCCCCccCcccCCcEee---CCEEEEEEeecCcccCCCCCCCCceEEEeeeeec
Confidence            0  112   22467899999743212379999999999973   246999999997 59876  38999999987754

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=99.97  E-value=2.1e-30  Score=229.80  Aligned_cols=197  Identities=17%  Similarity=0.163  Sum_probs=137.1

Q ss_pred             ecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC---CCcEEEE
Q psy2626         113 PSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT---SSGVSIE  189 (355)
Q Consensus       113 ~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~---~~~~~~~  189 (355)
                      ++..++|||++.+.+...       ..++|+|+||+++||||||||+..... ....+.+..|..+....   ...+.+.
T Consensus        35 ~a~~~~~p~~~~v~i~~~-------~~~~c~G~lI~~~~VLTAaHcv~~~~~-~~~~v~~~~G~~~~~~~~~~~~~~~~~  106 (242)
T 1agj_A           35 EKDRQKYPYNTIGNVFVK-------GQTSATGVLIGKNTVLTNRHIAKFANG-DPSKVSFRPSINTDDNGNTETPYGEYE  106 (242)
T ss_dssp             TTGGGSTTGGGEEEEEET-------TTEEEEEEECSSSEEEECHHHHGGGTT-CGGGEEEEETCEECTTSCEECTTCCEE
T ss_pred             cccccccccceEEEEEEC-------CCccEEEEEEeCCEEEEChhhcccCCC-CceEEEEecCccccccccccccCCcee
Confidence            467789999987765432       247899999999999999999975211 11123344477653321   1124577


Q ss_pred             EeeeEeCCCCCCCCCCCCeEEEEeCCCCC---CCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         190 IERPIIHEQYTSARKLNDIALFRLREDAP---LSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       190 v~~i~~hp~y~~~~~~~DIALl~L~~~v~---~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      ++.++.|| |+   ..+|||||||+.++.   |++.++|+||+...    ....+..++++|||.....    ..++...
T Consensus       107 ~~~i~~~~-~~---~~~DiAll~l~~~~~~~~~~~~v~~i~L~~~~----~~~~g~~~~v~Gwg~~~~~----~~l~~~~  174 (242)
T 1agj_A          107 VKEILQEP-FG---AGVDLALIRLKPDQNGVSLGDKISPAKIGTSN----DLKDGDKLELIGYPFDHKV----NQMHRSE  174 (242)
T ss_dssp             EEEEESCT-TC---TTSCCEEEEECCCTTSCCHHHHSCCCEECCST----TCCTTCEEEEEECCTTTST----TCCEEEE
T ss_pred             EEEEEeCC-CC---CCCcEEEEEEcCCCccccccccccceecCccc----cCCCCCEEEEEeCCCCCCC----ccceeee
Confidence            88889999 74   458999999999965   56679999998543    2457888999999976532    2467777


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCC-CCCCCcEEEeCcc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA-EVGFPGVYTRVTN  345 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~-~~~~p~vyt~V~~  345 (355)
                      +.+++...               .++.     ..++|+|||||||+...   +.|+||+|||.+|. .....++.+.|..
T Consensus       175 ~~~~~~~~---------------~~~~-----~~~~c~GdSGGPl~~~~---g~lvGI~s~g~~c~~~~~~~~~~~~i~~  231 (242)
T 1agj_A          175 IELTTLSR---------------GLRY-----YGFTVPGNSGSGIFNSN---GELVGIHSSKVSHLDREHQINYGVGIGN  231 (242)
T ss_dssp             EEECCGGG---------------SEEE-----ECCCCGGGTTCEEECTT---SEEEEEEEEEEECSSTTCEEEEEEECCH
T ss_pred             eeEecCCc---------------eEEE-----eCCcCCCCCchHhcccC---CEEEEEEeccccccCcCCCceeeEEehH
Confidence            77664311               1222     24789999999999642   37999999998887 3334678899985


Q ss_pred             cHHHHHh
Q psy2626         346 YIQWIAD  352 (355)
Q Consensus       346 y~~WI~~  352 (355)
                      .+.|+.+
T Consensus       232 ~~~~~l~  238 (242)
T 1agj_A          232 YVKRIIN  238 (242)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=99.97  E-value=1.7e-30  Score=224.34  Aligned_cols=186  Identities=16%  Similarity=0.230  Sum_probs=126.5

Q ss_pred             ecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEee
Q psy2626         113 PSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIER  192 (355)
Q Consensus       113 ~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~  192 (355)
                      .+..++|||||.+..            .+|+|+||+++||||||||+.....    ...+++... .. ......+.+.+
T Consensus         7 ~~~~~~~P~~~~~~~------------~~c~G~lI~~~~VLTaaHcv~~~~~----~~~v~v~~~-~~-~~~~~~~~~~~   68 (204)
T 2vid_A            7 VKDTNIFPYTGVVAF------------KSATGFVVGKNTILTNKHVSKNYKV----GDRITAHPN-SD-KGNGGIYSIKK   68 (204)
T ss_dssp             CSCTTSTTGGGEEEC------------SSCEEEEEETTEEEECHHHHTTCCT----TCEEEESCC-SS-SCCSCEEEEEE
T ss_pred             eccCCcCchhheEEe------------eeEEEEEEECCEEEEChhHCCCccC----CceEEEEec-cc-cCCCcEEEeeE
Confidence            477899999997631            3799999999999999999965211    112333211 11 12334677888


Q ss_pred             eEeCCCCCCCCCCCCeEEEEeCC--------CCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceE
Q psy2626         193 PIIHEQYTSARKLNDIALFRLRE--------DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRH  264 (355)
Q Consensus       193 i~~hp~y~~~~~~~DIALl~L~~--------~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~  264 (355)
                      ++.|+.      .+|||||||+.        ++.|++.++|+||+.      ....+..++++|||.....   ...+ .
T Consensus        69 i~~~~~------~~DiAll~l~~~~~~~~~~~~~~~~~v~pi~l~~------~~~~g~~~~~~G~g~~~~~---~~~~-~  132 (204)
T 2vid_A           69 IINYPG------KEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAA------GAKAGERIKVIGYPHPYKN---KYVL-Y  132 (204)
T ss_dssp             EEECSS------SSCCEEEEECSEEEEEETTEEEHHHHCCCCCBCS------CCCTTCEEEEEECCCCCC-----CCC-E
T ss_pred             EecCCC------CCeEEEEEEcCcccccccccccccccccccccCC------cCCCCCEEEEEeCCCCCCC---Ccce-E
Confidence            887653      47999999995        567778899999974      2346788999999975322   1112 2


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC---CCCCCCCcEEE
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK---CAEVGFPGVYT  341 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~---C~~~~~p~vyt  341 (355)
                      .....+..             +...++|.     +.++|+|||||||+..   .+.|+||+|+|..   |...++ ++|.
T Consensus       133 ~~~g~v~~-------------~~~~~~~~-----~~~~~~GdSGGPl~~~---~g~lvGI~s~g~~~~~~~~~~~-~~~~  190 (204)
T 2vid_A          133 ESTGPVMS-------------VEGSSIVY-----SAHTESGNSGSPVLNS---NNELVGIHFASDVKNDDNRNAY-GVYF  190 (204)
T ss_dssp             EEEEEEEE-------------EETTEEEE-----CCCCCGGGTTCEEECT---TSCEEEEEEEECC---CCCCEE-EECC
T ss_pred             eeccEEee-------------ccCCeEEE-----ecccCCCCccCcEECC---CCeEEEEEecCccCCCcccccc-eeEe
Confidence            22222211             23457886     4688999999999953   3469999999973   554444 4544


Q ss_pred             eCcccHHHHHhHhC
Q psy2626         342 RVTNYIQWIADNIS  355 (355)
Q Consensus       342 ~V~~y~~WI~~~i~  355 (355)
                      . +.|++||+++|.
T Consensus       191 ~-~~~~~wI~~~~~  203 (204)
T 2vid_A          191 T-PEIKKFIAENID  203 (204)
T ss_dssp             C-HHHHHHHHHHSC
T ss_pred             C-HHHHHHHHhhcC
Confidence            4 889999999874

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=99.96  E-value=1.2e-30  Score=224.58  Aligned_cols=186  Identities=15%  Similarity=0.182  Sum_probs=125.1

Q ss_pred             ecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEee
Q psy2626         113 PSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIER  192 (355)
Q Consensus       113 ~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~  192 (355)
                      .+..++|||||.+.            .++|+|+||+++||||||||+.....   ....++++.....  ...+.+.+++
T Consensus         7 i~~~~~~P~~v~~~------------~~~c~G~lI~~~~VLTaaHcv~~~~~---~~~~v~v~~~~~~--~~~~~~~~~~   69 (200)
T 2w7s_A            7 ITDATKEPYNSVVA------------FVGGTGVVVGKNTIVTNKHIAKSNDI---FKNRVSAHHSSKG--KGGGNYDVKD   69 (200)
T ss_dssp             ESCTTSTTGGGEEE------------ETTEEEEEEETTEEEECHHHHHHHHH---TTCCEEETCCSSS--CCCCEECEEE
T ss_pred             eeccccCCcccccc------------cceEEEEEEECCEEEEChhhcCCccc---CCcEEEEEecCcc--CCCcEEEEEE
Confidence            47789999999873            14799999999999999999864110   0123555433221  2334566766


Q ss_pred             eEeCCCCCCCCCCCCeEEEEeCCC----CCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEe
Q psy2626         193 PIIHEQYTSARKLNDIALFRLRED----APLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQIS  268 (355)
Q Consensus       193 i~~hp~y~~~~~~~DIALl~L~~~----v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~  268 (355)
                      ++.+.   .   .+|||||||+.+    +.|++.++|+||+.      ....+..++++||+...... .   .+.+.+.
T Consensus        70 i~~~~---~---~~DiAll~l~~~~~~~~~~~~~v~pi~l~~------~~~~g~~v~v~G~p~g~~~~-~---~~~~~~g  133 (200)
T 2w7s_A           70 IVEYP---G---KEDLAIVHVHETSTEGLNFNKNVSYTKFAD------GAKVKDRISVIGYPKGAQTK-Y---KMFESTG  133 (200)
T ss_dssp             EEECS---S---SSSCEEEEECSBCTTSCBGGGSCCCCCBCC------CCCTTCEEEEEECTTHHHHT-S---CEEEEEE
T ss_pred             EecCC---C---cceEEEEEECCCCCCcccccccccceeccc------cCCCCCEEEEEECCCCCCCc-c---ceEEeEE
Confidence            66433   2   489999999985    88889999999972      23468889999986421111 1   1334444


Q ss_pred             eeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCC--CCCCCcE-EEeCcc
Q psy2626         269 VVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA--EVGFPGV-YTRVTN  345 (355)
Q Consensus       269 ~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~--~~~~p~v-yt~V~~  345 (355)
                      +++.             +...++|.     +.++|+|||||||+...   ..|+||+|||..|+  ..+ +++ |+  +.
T Consensus       134 ~v~~-------------~~~~~~~~-----~~~~~~GdSGGPl~~~~---g~lvGI~s~g~~~~~~~~~-~~v~~~--~~  189 (200)
T 2w7s_A          134 TINH-------------ISGTFMEF-----DAYAQPGNSGSPVLNSK---HELIGILYAGSGKDESEKN-FGVYFT--PQ  189 (200)
T ss_dssp             EEEE-------------EETTEEEE-----CSCCCTTCTTCEEECTT---SCEEEEEEEEC----CCCE-EEEECC--HH
T ss_pred             EEEc-------------cCCCEEEE-----cceeCCCCccCeEECcC---CEEEEEEeccccCCCCccc-eeeecH--HH
Confidence            4432             11346665     36889999999999632   36999999998874  223 366 55  89


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++|+
T Consensus       190 ~~~wI~~~~~  199 (200)
T 2w7s_A          190 LKEFIQNNIE  199 (200)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHhhcc
Confidence            9999999874

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=99.93  E-value=5.4e-26  Score=201.72  Aligned_cols=171  Identities=18%  Similarity=0.164  Sum_probs=117.6

Q ss_pred             cCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccC----CCCcEEEE
Q psy2626         114 SERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLED----TSSGVSIE  189 (355)
Q Consensus       114 a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~----~~~~~~~~  189 (355)
                      +..++|||++.+.....       ..++|+|+||+++||||||||+..... ....+.++.|..+...    ......+.
T Consensus        29 ~~~~~~P~~~~~~i~~~-------~~~~c~G~lI~~~~VLTAaHcv~~~~~-~~~~v~v~~G~~~~~~~~~~~~~~~~~~  100 (246)
T 1qtf_A           29 TDNARSPYNSVGTVFVK-------GSTLATGVLIGKNTIVTNYHVAREAAK-NPSNIIFTPAQNRDAEKNEFPTPYGKFE  100 (246)
T ss_dssp             SCCSSTTGGGEEEEEET-------TTEEEEEEEEETTEEEECHHHHGGGTT-CGGGEEEEETCCCCTTTTCCCCTTCCEE
T ss_pred             hhcCcCchhcEEEEEEC-------CCceEEEEEEECCEEEECHHhCCCCCC-CceEEEEecCccccccccccccCCceEE
Confidence            56789999977543221       247899999999999999999965211 1134677788765432    01124678


Q ss_pred             EeeeEeCCCCCCCCCCCCeEEEEeCCCC---CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         190 IERPIIHEQYTSARKLNDIALFRLREDA---PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       190 v~~i~~hp~y~~~~~~~DIALl~L~~~v---~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      ++.++.|| |+   ..+|||||||+.++   .|++.++|+||+...    ....+..++++||+.....   + .+....
T Consensus       101 ~~~i~~hp-~~---~~~DiALLkl~~~~~~~~~~~~v~~i~L~~~~----~~~~g~~v~v~G~p~g~~~---~-~~~~~~  168 (246)
T 1qtf_A          101 AEEIKESP-YG---QGLDLAIIKLKPNEKGESAGDLIQPANIPDHI----DIAKGDKYSLLGYPYNYSA---Y-SLYQSQ  168 (246)
T ss_dssp             EEEEESCT-TC---TTSCCEEEEECCCTTSCCHHHHSCCCCCCSSC----CCCTTCEEEEEECCTTTST---T-CCEEEE
T ss_pred             EEEEEeCC-CC---CCCCEEEEEEeCCccccccccceeeeecCCcc----ccCCCCEEEEEECCCCCCC---c-eeEeee
Confidence            88999999 64   35899999999998   566679999998543    2357889999999754321   1 233334


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK  330 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~  330 (355)
                      +.+.+      ..                 ....++|+|||||||+...   ..|+||+|||..
T Consensus       169 ~~~~~------~~-----------------~~~~~~~~GdSGGPlv~~~---g~lvGI~s~g~~  206 (246)
T 1qtf_A          169 IEMFN------DS-----------------QYFGYTEVGNSGSGIFNLK---GELIGIHSGKGG  206 (246)
T ss_dssp             EEESS------SS-----------------BEESCCCGGGTTCEEECTT---CCEEEEEEEEET
T ss_pred             eeecC------cE-----------------EEeCCCCCCCchhheECCC---CEEEEEEecccc
Confidence            44432      00                 0024689999999999532   269999999865

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=99.93  E-value=4.8e-27  Score=199.54  Aligned_cols=168  Identities=20%  Similarity=0.220  Sum_probs=114.6

Q ss_pred             eeee-EEEEe---CCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCC
Q psy2626         140 WMCG-GALIT---KRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRE  215 (355)
Q Consensus       140 ~~C~-GtLIs---~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~  215 (355)
                      +.|+ |.++.   ++||||||||+...     ..  +.+...+      .+.  +.. +.+.+|    ..||||||||++
T Consensus        12 ~~ct~Gf~v~~~~~~~ilTaaHcv~~~-----~~--~~v~~~~------~~~--~g~-~~~~~~----~~~DiAll~l~~   71 (185)
T 2qa9_E           12 GRCSLGFNVRSGSTYYFLTAGHCTDGA-----TT--WWANSAR------TTV--LGT-TSGSSF----PNNDYGIVRYTN   71 (185)
T ss_dssp             CEEECCEEEEETTEEEEEECHHHHTTC-----SE--EESSTTS------CSE--EEE-EEEEEC----SBSCEEEEEECC
T ss_pred             CcEeccEEEEECCceEEEECcccCCCC-----Cc--EEecCCC------ceE--eEE-Eecccc----CCCCEEEEEecC
Confidence            5798 99987   46999999999751     11  2222110      011  111 122222    348999999999


Q ss_pred             -CCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEec
Q psy2626         216 -DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAG  294 (355)
Q Consensus       216 -~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~  294 (355)
                       ++.+++.++|++|+...    ....++.+.++||+..    .....++.+.+++. ...|. .+.    .+...|+|+ 
T Consensus        72 ~~~~~~~~v~~~~l~~~~----~~~~g~~v~~~Gw~~~----~~~g~l~~~~~~v~-~~~~~-~~~----~~~~~~~ca-  136 (185)
T 2qa9_E           72 TTIPKDGTVGGQDITSAA----NATVGMAVTRRGSTTG----THSGSVTALNATVN-YGGGD-VVY----GMIRTNVCA-  136 (185)
T ss_dssp             SSSCCCCEETTEECCEEC----CCCTTCEEEEEETTTE----EEEEEEEEEEEEEE-CSTTC-EEE----EEEEESCCC-
T ss_pred             CCccccCccceeeeCCcc----cCCCCCEEEEecCCCc----eeEeEEEEEEEEEE-cCCCC-EEe----ceEEecccC-
Confidence             99999999999997432    3457889999999642    13445777777652 22231 111    122455664 


Q ss_pred             ccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHhHh
Q psy2626         295 VLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI  354 (355)
Q Consensus       295 ~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i  354 (355)
                              |+|||||||++.  +  .|+||+|||..|+..+.|++||+|+.|++||+..|
T Consensus       137 --------c~GDSGGPlv~~--~--~~vGI~s~g~~~~~~~~p~vyt~v~~~~~wI~~~l  184 (185)
T 2qa9_E          137 --------EPGDSGGPLYSG--T--RAIGLTSGGSGNCSSGGTTFFQPVTEALSAYGVSV  184 (185)
T ss_dssp             --------CTTCTTCEEEET--T--EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHTCEE
T ss_pred             --------CCCCccceEEEC--C--EEEEEEEecCCCCCCCCcEEEEEHHHHHHhhCcEE
Confidence                    999999999974  2  79999999988666678999999999999998754

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=99.93  E-value=1.6e-25  Score=193.88  Aligned_cols=183  Identities=16%  Similarity=0.166  Sum_probs=123.6

Q ss_pred             cCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeee
Q psy2626         114 SERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERP  193 (355)
Q Consensus       114 a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i  193 (355)
                      +..++|||+|.+.            .++|+|+||+++||||||||+....  ....+.|++|...    ...+.+.++++
T Consensus         9 ~~~~~~P~~v~~~------------~~~c~G~lI~~~~VLTaaHcv~~~~--~~~~i~v~~~~~~----~~g~~~~~~~v   70 (210)
T 2as9_A            9 KDTNNFPYNGVVS------------FKDATGFVIGKNTIITNKHVSKDYK--VGDRITAHPNGDK----GNGGIYKIKSI   70 (210)
T ss_dssp             SCTTSTTGGGEEE------------CSSCEEEEEETTEEEECHHHHHHCC--TTCEEEESCCGGG----CCSCEEEEEEE
T ss_pred             ecCCcCCeEEEEE------------eeeEEEEEEeCCEEEECHhHCCccC--CCCEEEEEeCccc----CCCCEEEEEEE
Confidence            5678999999762            1479999999999999999996421  1124556555421    22345667666


Q ss_pred             EeCCCCCCCCCCCCeEEEEeCC--------CCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEE
Q psy2626         194 IIHEQYTSARKLNDIALFRLRE--------DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHV  265 (355)
Q Consensus       194 ~~hp~y~~~~~~~DIALl~L~~--------~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~  265 (355)
                      +.+.   .   .+|||||||+.        |+.|++.+.|++|+.      ....+..++++|||.....   ...+ .+
T Consensus        71 ~~~~---~---~~DiAll~l~~~~~~~~~~~~~~~~~v~~i~l~~------~~~~g~~v~v~G~p~~~~~---~~~l-~~  134 (210)
T 2as9_A           71 SDYP---G---DEDISVMNIEEQAVERGPKGFNFNENVQAFNFAK------DAKVDDKIKVIGYPLPAQN---SFKQ-FE  134 (210)
T ss_dssp             EECS---S---SSSCEEEEECSEEEEEETTEEEGGGSCCCCCBCS------CCCTTCEEEEEECSSTTTT---TSCC-EE
T ss_pred             EeCC---C---CCcEEEEEecCccccccccccccccccceeecCC------CCCCCCEEEEEeCCCCCCC---Ccce-EE
Confidence            6532   2   48999999998        688888999999972      2357889999999864321   1122 44


Q ss_pred             EEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeC-
Q psy2626         266 QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRV-  343 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V-  343 (355)
                      .+.+++..             ...++|+.     .+.|+|||||||+... +  .|+||+|||.. .+.. .. .|+.+ 
T Consensus       135 ~~g~v~~~-------------~~~~i~~~-----~~~~~GdSGGPlv~~~-g--~lvGI~s~g~~~~~~~-~~-~~~~~~  191 (210)
T 2as9_A          135 STGTIKRI-------------KDNILNFD-----AYIEPGNSGSPVLNSN-N--EVIGVVYGGIGKIGSE-YN-GAVYFT  191 (210)
T ss_dssp             EEEEEEEE-------------ETTEEEEE-----CCCCTTCTTCEEECTT-S--CEEEEECCSCCCTTCS-SE-EEEECC
T ss_pred             eeeEEccc-------------cCCeEEEc-----CccCCCCccCcEECCC-C--eEEEEEecccccCCcc-cc-ccEEEc
Confidence            45554431             13567763     5789999999999643 2  58999999976 3322 22 35554 


Q ss_pred             cccHHHHHhH
Q psy2626         344 TNYIQWIADN  353 (355)
Q Consensus       344 ~~y~~WI~~~  353 (355)
                      .....|++..
T Consensus       192 ~~i~~f~~~~  201 (210)
T 2as9_A          192 PQIKDFIQKH  201 (210)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            5566777653

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=99.92  E-value=6.8e-25  Score=165.91  Aligned_cols=93  Identities=31%  Similarity=0.793  Sum_probs=83.9

Q ss_pred             CCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCC
Q psy2626         258 LSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFP  337 (355)
Q Consensus       258 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p  337 (355)
                      .+..|+++.++++++++|+..+..   .+.++||||+.  .+.++|+|||||||++..+++|+|+||+|||..|+..+.|
T Consensus         3 ~~~~L~~~~v~i~~~~~C~~~~~~---~i~~~~iCa~~--~~~~~C~GDSGGPL~~~~~~~~~l~GIvS~g~~c~~~~~p   77 (97)
T 1yph_E            3 TPDRLQQASLPLLSNTNCKKYWGT---KIKDAMICAGA--SGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTP   77 (97)
T ss_dssp             CCSBCEEEEEEBCCHHHHHHHHGG---GCCTTEEEEEC--SSCBCCTTCTTCEEEEEETTEEEEEEEEEECCTTCCTTSE
T ss_pred             cCccceEEEEEECCHHHhhHHhcC---CCCCceEeecC--CCCCCCcCCCCCcEEEEeCCeEEEEEEEEeCCCCCCCCCC
Confidence            467899999999999999998754   57899999983  3679999999999999988999999999999998877889


Q ss_pred             cEEEeCcccHHHHHhHhC
Q psy2626         338 GVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       338 ~vyt~V~~y~~WI~~~i~  355 (355)
                      +|||||++|++||+++|+
T Consensus        78 ~vyt~V~~y~~WI~~~~~   95 (97)
T 1yph_E           78 GVYARVTALVNWVQQTLA   95 (97)
T ss_dssp             EEEEEHHHHHHHHHHHHH
T ss_pred             eEEEEHHHhHHHHHHHHc
Confidence            999999999999999873

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A

Probab=99.89  E-value=6.7e-23  Score=149.32  Aligned_cols=78  Identities=31%  Similarity=0.618  Sum_probs=66.6

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.++.+++|||||+|...         ..++|+||||+++||||||||+..       ...|++|.+++... ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~---------~~~~CgGslIs~~~VLTAAHC~~~-------~~~v~~G~~~~~~~~~~~~   64 (80)
T 2pka_A            1 IIGGRECEKNSHPWQVAIYHY---------SSFQCGGVLVNPKWVLTAAHCKND-------NYEVWLGRHNLFENENTAQ   64 (80)
T ss_dssp             CBSCEECCTTSCTTEEEEEET---------TEEEEEEEEEETTEEEECGGGCCS-------CCEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEEC---------CceEEEEEEEcCCEEEECHHHCCC-------CcEEEEeeeEcCCCCCCcE
Confidence            689999999999999999643         248999999999999999999864       34699999987653 4567


Q ss_pred             EEEEeeeEeCCCCCC
Q psy2626         187 SIEIERPIIHEQYTS  201 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~  201 (355)
                      .+.|+++++||+|+.
T Consensus        65 ~~~v~~i~~Hp~y~~   79 (80)
T 2pka_A           65 FFGVTADFPHPGFNL   79 (80)
T ss_dssp             EEEEEEEEECTTTTT
T ss_pred             EEEEEEEEECcCCCC
Confidence            899999999999975

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=99.84  E-value=7.6e-22  Score=166.74  Aligned_cols=157  Identities=20%  Similarity=0.223  Sum_probs=106.1

Q ss_pred             eeee-EEEEe---CCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCC
Q psy2626         140 WMCG-GALIT---KRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRE  215 (355)
Q Consensus       140 ~~C~-GtLIs---~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~  215 (355)
                      ..|+ |.||+   ++||||||||+...       ..+++|.++.                 +.|    ..+|||||||++
T Consensus        12 ~~ct~G~~v~~~~~~~vlTaaHc~~~~-------~~~~~G~~~~-----------------~~~----~~~DiAlikl~~   63 (181)
T 2sga_A           12 SRCSLGFNVSVNGVAHALTAGHCTNIS-------ASWSIGTRTG-----------------TSF----PNNDYGIIRHSN   63 (181)
T ss_dssp             EEEECCEEEEETTEEEEEECHHHHTTC-------SEETTEEEEE-----------------EEC----SBSCEEEEEESC
T ss_pred             CcEeccEEEEECCceEEEECcccCCCC-------CceeecceeC-----------------CcC----CCCCEEEEEccC
Confidence            4799 99998   68999999998641       1234454320                 111    237999999999


Q ss_pred             CCCCCCCcccc----ccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeE
Q psy2626         216 DAPLSDLIQPI----CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENIL  291 (355)
Q Consensus       216 ~v~~~~~v~pi----cLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~  291 (355)
                      ++.+++.++++    +++....   ....++.+.+.||+...    ....++.+.+.+ +...+. .+        ..++
T Consensus        64 ~~~~~~~v~~i~~~~~~~~~~~---~~~~G~~v~~~G~~~~~----t~G~v~~~~~~v-~~~~~~-~~--------~~~i  126 (181)
T 2sga_A           64 PAAADGRVYLYNGSYQDITTAG---NAFVGQAVQRSGSTTGL----RSGSVTGLNATV-NYGSSG-IV--------YGMI  126 (181)
T ss_dssp             GGGCCCEEECSSSCEEECCEEC---CCCTTCEEEEEETTTEE----EEEEEEEEEEEE-ECGGGC-EE--------EEEE
T ss_pred             CCcccceEEecCCcceeecccc---cCCCCCEEEEeecCCCc----cEEEEEEeEEEE-ECCCCC-EE--------eeeE
Confidence            99888889998    7764322   34578888888886431    123456566554 222221 01        1123


Q ss_pred             EecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeCcccHHHHH
Q psy2626         292 CAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIA  351 (355)
Q Consensus       292 Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V~~y~~WI~  351 (355)
                      +.     ..-+|+|||||||++..    .++||+|||.. |+. +.|++|++|+.|++|+.
T Consensus       127 ~~-----~~c~~~GDSGGPlv~~~----~~vGI~s~g~~~~~~-~~~~v~~~v~~~~~~l~  177 (181)
T 2sga_A          127 QT-----NVCAQPGDSGGSLFAGS----TALGLTSGGSGNCRT-GGTTFYQPVTEALSAYG  177 (181)
T ss_dssp             EE-----SCCCCTTCTTCEEEETT----EEEEEEEEEEEETTT-EEEEEEEEHHHHHHHHT
T ss_pred             ec-----ccccCCCCCCCEEEECC----EEEEEEEeeCCCCcC-CCceEEEEHHHHHHhcC
Confidence            22     12346899999999642    79999999976 554 56999999999999985

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=99.76  E-value=4e-18  Score=150.13  Aligned_cols=184  Identities=17%  Similarity=0.140  Sum_probs=112.4

Q ss_pred             CccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCC
Q psy2626         118 QWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHE  197 (355)
Q Consensus       118 e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp  197 (355)
                      --|.+|.|.....    .......++|+||+++||||||||+...     ..+.|+++.         ..+..+.+..|+
T Consensus        40 ~~~svV~I~~~~~----~~~~~~~GsG~iI~~~~VlTaaH~v~~~-----~~~~V~~~~---------~~~~~~~v~~~~  101 (237)
T 3k6y_A           40 TEPSVVKIRSLAP----RCQKVLEGTGFVISPDRVMTNAHVVAGS-----NNVTVYAGD---------KPFEATVVSYDP  101 (237)
T ss_dssp             HGGGEEEEEEEEG----GGTEEEEEEEEEEETTEEEECGGGTTTC-----SEEEEEETT---------EEEECEEEEEET
T ss_pred             hcCCEEEEEEEec----CCCcceeEEEEEEECCEEEECHHHcCCC-----ceEEEEECC---------cEEEEEEEEEcC
Confidence            4688999876542    2233568999999999999999999641     346677764         134455566666


Q ss_pred             CCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHh
Q psy2626         198 QYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQ  277 (355)
Q Consensus       198 ~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~  277 (355)
                      .       +|||||||+     +..+.|++|+. .    ....+..++++||+....     ..+....+.......|..
T Consensus       102 ~-------~DiAll~l~-----~~~~~~~~l~~-~----~~~~G~~v~v~G~p~g~~-----~~~~~g~v~~~~~~~~~~  159 (237)
T 3k6y_A          102 S-------VDVAILAVP-----HLPPPPLVFAA-E----PAKTGADVVVLGYPGGGN-----FTATPARIREAIRLSGPD  159 (237)
T ss_dssp             T-------TTEEEEECT-----TCCSCCCCBCS-S----CCCTTCEEEEEECGGGCS-----CEEEEEEEEEEEEEEECC
T ss_pred             C-------CCEEEEEeC-----CCCCCceecCC-C----CCCCCCEEEEEECCCCCC-----CccceeEEEeeEeecccc
Confidence            4       799999998     34688999982 2    346788999999986431     122222332222222222


Q ss_pred             hhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHh
Q psy2626         278 IFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIAD  352 (355)
Q Consensus       278 ~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~  352 (355)
                      .+... ......+++.     +...|+|||||||+... +  .|+||+|++..-.. + -+....+....+||++
T Consensus       160 ~~~~~-~~~~~~~~~~-----~~~~~~GdSGGPLv~~~-G--~vvGI~s~~~~~~~-~-~~~aip~~~v~~~l~~  223 (237)
T 3k6y_A          160 IYGDP-EPVTRDVYTI-----RADVEQGDSGGPLIDLN-G--QVLGVVFGAAIDDA-E-TGFVLTAGEVAGQLAK  223 (237)
T ss_dssp             TTCCS-SCEEEEEEEE-----ESCCCTTCTTCEEECTT-S--CEEEEEEEECSSST-T-EEEEEEHHHHHGGGGG
T ss_pred             cccCC-CcccccEEEe-----cCccCCCccHHHEECCC-C--EEEEEEEeeccCCC-c-EEEEEEHHHHHHHHHH
Confidence            22110 0011112322     45789999999999643 2  49999999764211 1 1334455555555543

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=99.72  E-value=5.5e-17  Score=142.59  Aligned_cols=171  Identities=16%  Similarity=0.159  Sum_probs=107.2

Q ss_pred             ceeeeEEEEeCC-EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCC
Q psy2626         139 EWMCGGALITKR-YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDA  217 (355)
Q Consensus       139 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v  217 (355)
                      ...|+|+||+++ ||||||||+...     ..+.|+++.        .+.+.++-+..+       ..+|||||||+.++
T Consensus        55 ~~~gsG~iI~~~g~ILTnaHvv~~~-----~~i~V~~~~--------g~~~~a~vv~~d-------~~~DlAllkl~~~~  114 (239)
T 1l1j_A           55 ASLGSGFIFDPEGYILTNYHVVGGA-----DNITVTMLD--------GSKYDAEYIGGD-------EELDIAVIKIKASD  114 (239)
T ss_dssp             EEEEEEEEEETTTEEEEEHHHHSSC-----SSCEEECTT--------SCEEEBCCCEEE-------TTTTEEEEEBCCSS
T ss_pred             CceEEEEEEeCCCEEEEChHHhCCC-----CEEEEEECC--------CCEEEEEEEEEc-------CCCCEEEEEEcCCC
Confidence            468999999986 999999999752     245677663        123344322222       24899999999875


Q ss_pred             CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCC-CCCCCCeEEeccc
Q psy2626         218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG-ATINENILCAGVL  296 (355)
Q Consensus       218 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~-~~~~~~~~Ca~~~  296 (355)
                         ..+.|++|+...    ....++.+++.||+....     .   .+...+++...+.  +.... ......++|+   
T Consensus       115 ---~~~~~~~l~~s~----~~~~G~~v~~iG~p~g~~-----~---~vt~Givs~~~r~--~~~~~~~~~~~~~i~t---  174 (239)
T 1l1j_A          115 ---KKFPYLEFGDSD----KVKIGEWAIAIGNPLGFQ-----H---TVTVGVVSATNRR--IPKPDGSGYYVGLIQT---  174 (239)
T ss_dssp             ---SCCCCCEECCGG----GCCTTCEEEEEECTTSSS-----C---EEEEEEEEEEEEE--EECTTSSCEEEEEEEE---
T ss_pred             ---CCCceEEecCcc----CCccccEEEEEECCCCCC-----C---cEEEEEEeccccc--cccCCCccccCCEEEE---
Confidence               467899997532    345788999999986421     1   1122222221111  00000 0012357887   


Q ss_pred             CCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHhHh
Q psy2626         297 SGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI  354 (355)
Q Consensus       297 ~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i  354 (355)
                        +...|.|||||||+...+   .|+||+|++..-+....-+....+....+|+++.+
T Consensus       175 --da~i~~G~SGGPLv~~~G---~vvGI~s~~~~~~~~~g~~faIP~~~~~~~~~~l~  227 (239)
T 1l1j_A          175 --DAAINPGNSGGPLLNIHG---EVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTIL  227 (239)
T ss_dssp             --SSCCCTTTTTSEEECSSS---EEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGC
T ss_pred             --CCCCCCCCccHHhccCCC---eEEEEEeeeecCCCcCceEEEEEHHHHHHHHHHHH
Confidence              357899999999995432   69999999865111112356677777788887754

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=99.71  E-value=2.1e-16  Score=138.36  Aligned_cols=187  Identities=15%  Similarity=0.162  Sum_probs=111.7

Q ss_pred             ccceEEeceeeecccc-CCCCceeeeEEEEeCC-EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeC
Q psy2626         119 WPWMAAIGFKIRRRRA-NGKPEWMCGGALITKR-YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIH  196 (355)
Q Consensus       119 ~Pw~v~l~~~~~~~~~-~~~~~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~h  196 (355)
                      -|.+|.|......... .......++|+||+++ ||||||||+..     .....|+++.        ...+..+.+..+
T Consensus        41 ~~sVV~I~~~~~~~~~~~~~~~~~GSG~iI~~~G~VLTaaHvv~~-----~~~i~V~~~~--------g~~~~a~v~~~d  107 (231)
T 3tjo_A           41 APAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN-----KHRVKVELKN--------GATYEAKIKDVD  107 (231)
T ss_dssp             GGGEEEEEEEEECTTSSCEEEEEEEEEEECSTTCEEEEETTTCCS-----SSEEEEECTT--------SCEEEEEEEEEE
T ss_pred             cCcEEEEEEEeccccCCCccccceEEEEEEeCCCEEEEchhcccC-----CceEEEEcCC--------CCEEEEEEEEec
Confidence            5777777654320000 0111257999999998 99999999965     1345566542        234455555666


Q ss_pred             CCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHH
Q psy2626         197 EQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCR  276 (355)
Q Consensus       197 p~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~  276 (355)
                      |.       +|||||||+.+.    .+.|+.|+...    ....++.++++||+...     ...+....+.......+.
T Consensus       108 ~~-------~DlAlL~l~~~~----~~~~~~l~~~~----~~~~G~~v~~~G~p~g~-----~~~~~~g~vs~~~~~~~~  167 (231)
T 3tjo_A          108 EK-------ADIALIKIDHQG----KLPVLLLGRSS----ELRPGEFVVAIGSPFSL-----QNTVTTGIVSTTQRGGKE  167 (231)
T ss_dssp             TT-------TTEEEEECCCSS----CCCCCCBCCGG----GCCTTCEEEEEEEEETT-----EEEEEEEEEEECC-----
T ss_pred             CC-------CCEEEEEecCCC----CCCceecCCcC----CCCCCCEEEEEECCCCC-----CCceeeEEEeeccccccc
Confidence            64       699999998763    45677776443    34578899999998642     112222223222222111


Q ss_pred             hhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHhHh
Q psy2626         277 QIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI  354 (355)
Q Consensus       277 ~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i  354 (355)
                      ..+.    .....+++.     +...|.|||||||+... +  .|+||+||+...+    -+....+....+||++..
T Consensus       168 ~~~~----~~~~~~i~~-----da~i~~G~SGGPLv~~~-G--~vVGI~s~~~~~g----~~~aip~~~i~~~l~~~~  229 (231)
T 3tjo_A          168 LGLR----NSDMDYIQT-----DAIINYGNAGGPLVNLD-G--EVIGINTLKVTAG----ISFAIPSDKIKKFLTESH  229 (231)
T ss_dssp             ------------CCEEE-----SSCCCTTTTTSEEECTT-S--CEEEEEEEEEETT----EEEEEEHHHHHHHHHHHH
T ss_pred             cccC----CCcccEEEE-----cCCcCCCCchhHeecCC-C--eEEEEEeEEecCC----eEEEEEHHHHHHHHHHHh
Confidence            1111    011234454     35678999999999533 2  4999999986532    245677888888888764

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.69  E-value=4.4e-16  Score=143.36  Aligned_cols=192  Identities=15%  Similarity=0.079  Sum_probs=111.2

Q ss_pred             CccceEEeceeeeccccCCCCceeeeEEEEeC-CEEEeeccccCCCCCC----CcCceEEEeccccccCCCCcEEEEEee
Q psy2626         118 QWPWMAAIGFKIRRRRANGKPEWMCGGALITK-RYVLTAAHCVSPDTTG----EYEPYIVHVGSIDLEDTSSGVSIEIER  192 (355)
Q Consensus       118 e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~-~~VLTAAhCv~~~~~~----~~~~~~v~~G~~~~~~~~~~~~~~v~~  192 (355)
                      -.|++|.|.....      .....|+|+||++ .||||||||+......    ....+.|+++.-        ..+..+-
T Consensus        15 ~~~svV~I~~~~~------~~~~~gsG~iI~~~g~ILT~aHvv~~~~~~~~~~~~~~i~V~~~~g--------~~~~a~v   80 (324)
T 1y8t_A           15 VVPSVVMLETDLG------RQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDG--------RTAPFTV   80 (324)
T ss_dssp             HGGGEEEEEEEC----------CEEEEEECCTTSEEEEEHHHHTTCC--------CEEEEEETTC--------CEECEEE
T ss_pred             hcCcEEEEEEEcc------CCCceEEEEEEeCCCEEEEChHHcCCcccccccCCceEEEEEeCCC--------CEEEEEE
Confidence            4799999965422      2347899999998 7999999999752100    012466777631        2333332


Q ss_pred             eEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeCh
Q psy2626         193 PIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDN  272 (355)
Q Consensus       193 i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~  272 (355)
                      +.    |+   ..+|||||||+.+    ..+.|++|+...    ....++.++++||.....     .......+.   .
T Consensus        81 v~----~d---~~~DlAllkl~~~----~~~~~~~l~~~~----~~~~G~~v~~~G~p~g~~-----~~~~~G~vs---~  137 (324)
T 1y8t_A           81 VG----AD---PTSDIAVVRVQGV----SGLTPISLGSSS----DLRVGQPVLAIGSPLGLE-----GTVTTGIVS---A  137 (324)
T ss_dssp             EE----CC---TTTTEEEEEECSC----CSCCCCEECCST----TCCTTCEEEEEECGGGCT-----TEEEEEEEE---E
T ss_pred             EE----eC---CCCCEEEEEECCC----CCCceEEecCcc----cCCCCCEEEEEEcCCCCC-----CcEeeeEEe---e
Confidence            22    22   2489999999976    457899997543    245788999999954221     111111111   0


Q ss_pred             hHHHhhh-hcCC-CCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCC--------CCCCcEEEe
Q psy2626         273 PKCRQIF-SNYG-ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE--------VGFPGVYTR  342 (355)
Q Consensus       273 ~~C~~~~-~~~~-~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~--------~~~p~vyt~  342 (355)
                      ..+.... ...+ ......++|+     +...|.|||||||+...+   .|+||+|++..-..        ...-+....
T Consensus       138 ~~~~~~~~~~~g~~~~~~~~i~~-----d~~~~~G~SGGPlv~~~G---~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP  209 (324)
T 1y8t_A          138 LNRPVSTTGEAGNQNTVLDAIQT-----DAAINPGNSGGALVNMNA---QLVGVNSAIATLGADSADAQSGSIGLGFAIP  209 (324)
T ss_dssp             EEEEECC-------CCCEEEEEE-----CSCCCTTCTTEEEECTTS---EEEEEEEEECCC-------CCCCSSCEEEEE
T ss_pred             cccccccccccCcccccCCEEEE-----cCCCCCCCccCcEECCCC---eEEEEEeeecccCcccccccccccceEEecC
Confidence            0000000 0000 0123468887     357899999999996432   69999999754210        111345666


Q ss_pred             CcccHHHHHhHh
Q psy2626         343 VTNYIQWIADNI  354 (355)
Q Consensus       343 V~~y~~WI~~~i  354 (355)
                      +....+|+.+.+
T Consensus       210 ~~~v~~~l~~l~  221 (324)
T 1y8t_A          210 VDQAKRIADELI  221 (324)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            667777776543

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.68  E-value=2.1e-16  Score=146.74  Aligned_cols=171  Identities=15%  Similarity=0.164  Sum_probs=111.4

Q ss_pred             eeeeEEEEeCC-EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCC
Q psy2626         140 WMCGGALITKR-YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAP  218 (355)
Q Consensus       140 ~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~  218 (355)
                      ..++|+||+++ ||||||||+.+.     ....|+++.        ...+..+-+..++.       +|||||||+.+. 
T Consensus        53 g~GSG~iI~~~G~IlT~aHvv~~~-----~~i~V~~~~--------g~~~~a~~v~~d~~-------~DlAlLkl~~~~-  111 (348)
T 3qo6_A           53 GSGSGFVWDKQGHIVTNYHVIRGA-----SDLRVTLAD--------QTTFDAKVVGFDQD-------KDVAVLRIDAPK-  111 (348)
T ss_dssp             EEEEEEEEETTTEEEECHHHHTTC-----SEEEEECTT--------SCEEEEEEEEEEGG-------GTEEEEECCCCG-
T ss_pred             ceEEEEEEeCCCEEEECHHHhCCC-----cEEEEEECC--------CCEEEEEEEEEcCc-------CCEEEEEEcCCC-
Confidence            46999999998 999999999751     345566542        23345555555554       699999998762 


Q ss_pred             CCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCC
Q psy2626         219 LSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSG  298 (355)
Q Consensus       219 ~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~  298 (355)
                        ..+.|+.|+...    ....+..+++.||+....     ..+....+..+....+.....    .....+++.     
T Consensus       112 --~~~~~i~l~~s~----~~~~G~~v~~iG~p~g~~-----~~~~~g~vs~~~~~~~~~~~~----~~~~~~i~~-----  171 (348)
T 3qo6_A          112 --NKLRPIPVGVSA----DLLVGQKVFAIGNPFGLD-----HTLTTGVISGLRREISSAATG----RPIQDVIQT-----  171 (348)
T ss_dssp             --GGCCCCCBCCST----TCCTTCEEEEEECGGGCT-----TEEEEEEEEEEEEEECCSSSS----SCEEEEEEE-----
T ss_pred             --CCceeEEecCcc----cCCCCCEEEEEECCCCCC-----CcEeEEEEEeeccccccccCC----CcccCEEEE-----
Confidence              467889997544    345788999999986432     223333333332222211100    001123333     


Q ss_pred             CCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeCcccHHHHHhHh
Q psy2626         299 GKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADNI  354 (355)
Q Consensus       299 ~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~i  354 (355)
                      +...|.|||||||+... +  .++||+|++.. ++.....+.+..+....+||++.+
T Consensus       172 da~i~~G~SGGPLvn~~-G--~vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~  225 (348)
T 3qo6_A          172 DAAINPGNSGGPLLDSS-G--TLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLV  225 (348)
T ss_dssp             CSCCCTTCTTCEEECTT-S--CEEEEEEEEECSSSSCSSCEEEEEHHHHHHHHHHHH
T ss_pred             eCCcCCCCcHHHhhCCC-C--eEEEEEEeeecCCCCcccEEEEEEecchHHHHHHHH
Confidence            45789999999999643 2  49999999765 443344678889999999998765

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=99.63  E-value=1e-14  Score=128.17  Aligned_cols=168  Identities=16%  Similarity=0.180  Sum_probs=104.9

Q ss_pred             ceeeeEEEEeCC-EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCC
Q psy2626         139 EWMCGGALITKR-YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDA  217 (355)
Q Consensus       139 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v  217 (355)
                      ...++|+||+++ ||||||||+...     ....|++..        ...+..+.+..||.       +|||||||+.+.
T Consensus        52 ~~~GsG~ii~~~G~IlTaaHvv~~~-----~~~~V~~~~--------g~~~~a~vv~~d~~-------~DlAll~l~~~~  111 (237)
T 3lgi_A           52 RTLGSGVIMDQRGYIITNKHVINDA-----DQIIVALQD--------GRVFEALLVGSDSL-------TDLAVLKINATG  111 (237)
T ss_dssp             EEEEEEEEEETTTEEEEEHHHHTTC-----SEEEEECTT--------SCEEEEEEEEEETT-------TTEEEEECCCSS
T ss_pred             ceEEEEEEEeCCCEEEEeeeecCCC-----CEEEEEeCC--------CCEEEEEEEEEcCC-------CCEEEEEecCCC
Confidence            357999999998 999999999751     245565532        23455666666665       699999998764


Q ss_pred             CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccC
Q psy2626         218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS  297 (355)
Q Consensus       218 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~  297 (355)
                          .+.++.|+...    ....+..+++.||+...     ...+....+.......+..       .....+++.    
T Consensus       112 ----~~~~~~l~~~~----~~~~G~~v~~~G~p~~~-----~~~~~~g~vs~~~~~~~~~-------~~~~~~i~~----  167 (237)
T 3lgi_A          112 ----GLPTIPINARR----VPHIGDVVLAIGNPYNL-----GQTITQGIISATGRIGLNP-------TGRQNFLQT----  167 (237)
T ss_dssp             ----CCCCCCCCTTC----CCCTTBEEEEEECGGGS-----CSEEEEEEEEEECCSSCCT-------TSCSCCEEE----
T ss_pred             ----CCceEeccCcc----cCCCCCEEEEEECCCCC-----CCcEEEEEEEecccccccC-------CCcCCEEEE----
Confidence                35677887533    34578899999998642     2223333333332221111       112234444    


Q ss_pred             CCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCC----CCCCcEEEeCcccHHHHHhHh
Q psy2626         298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE----VGFPGVYTRVTNYIQWIADNI  354 (355)
Q Consensus       298 ~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~----~~~p~vyt~V~~y~~WI~~~i  354 (355)
                       +...|.|||||||+... +  .|+||+|++..-..    ...-+....+....+++++.+
T Consensus       168 -d~~i~~G~SGGPlv~~~-G--~vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~  224 (237)
T 3lgi_A          168 -DASINHGNSGGALVNSL-G--ELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLI  224 (237)
T ss_dssp             -CSCCCTTCTTCEEECTT-C--CEEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHH
T ss_pred             -cCccCCCCchHHeeCCC-C--eEEEEEeeeeccCCCCcCcCceEEEEEHHHHHHHHHHHH
Confidence             35679999999999642 2  49999999755211    111244556666667776654

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=99.62  E-value=1.7e-14  Score=133.18  Aligned_cols=166  Identities=16%  Similarity=0.187  Sum_probs=100.2

Q ss_pred             ceeeeEEEEeCC-EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCC
Q psy2626         139 EWMCGGALITKR-YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDA  217 (355)
Q Consensus       139 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v  217 (355)
                      ...++|+||+++ ||||||||+...     ....|+++.        ...+.++.+..||.       +|||||||+.+ 
T Consensus        45 ~~~GSG~iI~~~G~ILTaaHvv~~~-----~~i~V~~~~--------g~~~~a~~~~~d~~-------~DlAlL~l~~~-  103 (332)
T 3num_A           45 VASGSGFIVSEDGLIVTNAHVVTNK-----HRVKVELKN--------GATYEAKIKDVDEK-------ADIALIKIDHQ-  103 (332)
T ss_dssp             EEEEEEEEEETTTEEEECTTTCCTT-----SEEEEEETT--------SCEEEEEEEEEETT-------TTEEEEEECCS-
T ss_pred             eeeEEEEEEeCCCEEEEChHHcCCC-----CEEEEEECC--------CCEEEEEEEEecCC-------CCeEEEEEcCC-
Confidence            357999999998 999999999651     345666643        23456667777775       69999999876 


Q ss_pred             CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccC
Q psy2626         218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS  297 (355)
Q Consensus       218 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~  297 (355)
                         ..+.++.|+...    ....+..++++||+....     ..+....+.......+...+..    ....+++.    
T Consensus       104 ---~~~~~~~l~~~~----~~~~G~~v~~~G~p~g~~-----~~~~~g~vs~~~~~~~~~~~~~----~~~~~i~~----  163 (332)
T 3num_A          104 ---GKLPVLLLGRSS----ELRPGEFVVAIGSPFSLQ-----NTVTTGIVSTTQRGGKELGLRN----SDMDYIQT----  163 (332)
T ss_dssp             ---SCCCCCCBCCTT----SCCTTCEEEEECC----------CCEEEEEEEEC------------------CCEEE----
T ss_pred             ---CCCceeeecCcc----cCCCCCEEEEEECCCCCC-----cceeeeEEEeecccccccCcCC----CcCCEEEE----
Confidence               345677776543    345788999999986421     2223333333333222221111    11234444    


Q ss_pred             CCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHhH
Q psy2626         298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN  353 (355)
Q Consensus       298 ~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  353 (355)
                       +...|.|||||||+...+   .|+||+|++...+    -+....+.....||.+.
T Consensus       164 -d~~i~~G~SGGPlv~~~G---~vvGI~s~~~~~g----~~~aip~~~i~~~l~~~  211 (332)
T 3num_A          164 -DAIINYGNAGGPLVNLDG---EVIGINTLKVTAG----ISFAIPSDKIKKFLTES  211 (332)
T ss_dssp             -SSCCCTTTTTSEEEETTS---CEEEEEEEEEETT----EEEEEEHHHHHHHHHHH
T ss_pred             -ECCcCCCCcHHHhhCCCC---cEEEEEeeEeccc----ceEEECHHHHHHHHHHH
Confidence             345788999999996432   4999999976532    24456666666676654

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.60  E-value=3.8e-14  Score=129.97  Aligned_cols=168  Identities=17%  Similarity=0.187  Sum_probs=103.6

Q ss_pred             ceeeeEEEEeCC-EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCC
Q psy2626         139 EWMCGGALITKR-YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDA  217 (355)
Q Consensus       139 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v  217 (355)
                      ...|+|+||+++ ||||||||+...     ..+.|+++.        ...+..+-+..++       .+|||||||+.+ 
T Consensus        41 ~~~gsG~iI~~~G~IlT~aHvv~~~-----~~i~V~~~~--------g~~~~a~v~~~d~-------~~DlAllk~~~~-   99 (318)
T 1te0_A           41 RTLGSGVIMDQRGYIITNKHVINDA-----DQIIVALQD--------GRVFEALLVGSDS-------LTDLAVLIIKAT-   99 (318)
T ss_dssp             EEEEEEEECSTTCEEEEEHHHHTTC-----SEEEEECTT--------SCEEEEEEEEEET-------TTTEEEEECCCS-
T ss_pred             CccEEEEEEeCCCEEEECHHHcCCC-----CEEEEEeCC--------CCEEEEEEEEeCC-------CceEEEEEEeCC-
Confidence            478999999998 999999999751     235566543        1233333222322       379999999876 


Q ss_pred             CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccC
Q psy2626         218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS  297 (355)
Q Consensus       218 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~  297 (355)
                         ..+.|++|+...    ....+..+++.||....     ........+.-...    ..+.   ......++|+    
T Consensus       100 ---~~~~~~~l~~~~----~~~~G~~v~~~G~p~g~-----~~~~~~g~vs~~~~----~~~~---~~~~~~~i~~----  156 (318)
T 1te0_A          100 ---GGLPTIPINARR----VPHIGDVVLAIGNPYNL-----GQTITQGIISATGR----IGLN---PTGRQNFLQT----  156 (318)
T ss_dssp             ---SCCCCCCCCTTC----CCCTTCEEEEECCCSSS-----SCCEEEEEEEECCC----CCCC---TTCSCCSEEE----
T ss_pred             ---CCCceEEeeCcc----CCCCCCEEEEEEcCCCC-----CCcEEeeEEecccc----cccC---CCCcCCEEEE----
Confidence               356788887533    34578899999975421     11122222222111    0111   1123467887    


Q ss_pred             CCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCC----CCCCCcEEEeCcccHHHHHhHh
Q psy2626         298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA----EVGFPGVYTRVTNYIQWIADNI  354 (355)
Q Consensus       298 ~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~----~~~~p~vyt~V~~y~~WI~~~i  354 (355)
                       +...|.|+|||||+... +  .|+||++++..-.    ....-+.+..+....+|+++.+
T Consensus       157 -d~~~~~G~SGGPl~~~~-G--~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~  213 (318)
T 1te0_A          157 -DASINHGNSGGALVNSL-G--ELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLI  213 (318)
T ss_dssp             -SSCCCTTTTTSEEECTT-C--CEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHH
T ss_pred             -CCCCCCCCCcCceECCC-C--eEEEEEeeeeccCCccccccceEEeccHHHHHHHHHHHH
Confidence             35789999999999643 2  5999999986521    1112355677777777776643

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.57  E-value=1.2e-14  Score=133.66  Aligned_cols=164  Identities=16%  Similarity=0.166  Sum_probs=101.6

Q ss_pred             ceeeeEEEEeCC-EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCC
Q psy2626         139 EWMCGGALITKR-YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDA  217 (355)
Q Consensus       139 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v  217 (355)
                      ...|+|+||+++ ||||||||+.+.     ..+.|+++.        ...+..+-+..+       ..+|||||||+.+.
T Consensus        46 ~~~gsG~iI~~~G~IlT~aHvv~~~-----~~i~V~~~~--------g~~~~a~v~~~d-------~~~DlAllkl~~~~  105 (325)
T 1lcy_A           46 ISNGSGFVVAADGLIVTNAHVVADR-----RRVRVRLLS--------GDTYEAVVTAVD-------PVADIATLRIQTKE  105 (325)
T ss_dssp             EEEEEEEEEETTTEEEECHHHHTTC-----SEEEEECTT--------SCEEEEEEEEEE-------TTTTEEEEECCCSS
T ss_pred             cccEEEEEEeCCCEEEECHHHcCCC-----CEEEEEeCC--------CCEEEEEEEEEC-------CCCCEEEEEEcCCC
Confidence            368999999998 999999999751     246676653        123333322222       24899999998763


Q ss_pred             CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccC
Q psy2626         218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS  297 (355)
Q Consensus       218 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~  297 (355)
                          .+.|++|+...    ....++.+++.||+....        ..+...+++...|....... ......++|+.   
T Consensus       106 ----~~~~~~l~~~~----~~~~G~~v~~~G~p~~~~--------~~v~~G~vs~~~~~~~~~g~-~~~~~~~i~~d---  165 (325)
T 1lcy_A          106 ----PLPTLPLGRSA----DVRQGEFVVAMGSPFALQ--------NTITSGIVSSAQRPARDLGL-PQTNVEYIQTD---  165 (325)
T ss_dssp             ----CCCCCCBCCGG----GCCTTCEEEECCCTTSSS--------SCCEEEEBCSCSCC----------CCCCEEES---
T ss_pred             ----CCceEEecccc----cCCCCCEEEEEECCCCCC--------CcEEeEEEecccccccccCC-CCCCCCEEEEc---
Confidence                46788887532    345788899999986532        12344555555553211000 12345788984   


Q ss_pred             CCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHH
Q psy2626         298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIA  351 (355)
Q Consensus       298 ~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~  351 (355)
                        ...|.|||||||+... +  .|+||++++..-   + -+....+....+|++
T Consensus       166 --~~~~~G~SGGPl~~~~-G--~vVGI~s~~~~~---g-~~~aip~~~i~~~l~  210 (325)
T 1lcy_A          166 --AAIDFGNAGGPLVNLD-G--EVIGVNTMKVTA---G-ISFAIPSDRLREFLH  210 (325)
T ss_dssp             --SCCSTTTTTSEEEETT-S--CEEEEEEEEEET---T-EEEEEEHHHHHHHTC
T ss_pred             --CCCCCCCccccEECCC-C--EEEEEEeEeecC---C-eeEEEEHHHHHHHHH
Confidence              5689999999999643 2  599999997531   1 233444444444443

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=99.53  E-value=2.3e-13  Score=119.66  Aligned_cols=167  Identities=17%  Similarity=0.164  Sum_probs=99.0

Q ss_pred             eeeeEEEEeCC--EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCC
Q psy2626         140 WMCGGALITKR--YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDA  217 (355)
Q Consensus       140 ~~C~GtLIs~~--~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v  217 (355)
                      ..++|+||+++  ||||+|||+...     ....|++..        ...+..+-+..|+.       +|||||||+.+.
T Consensus        63 ~~GSGfiI~~~~G~IlTnaHvv~~a-----~~i~V~~~d--------g~~~~a~vv~~d~~-------~DlAlLkv~~~~  122 (245)
T 3sti_A           63 GLGSGVIINASKGYVLTNNHVINQA-----QKISIQLND--------GREFDAKLIGSDDQ-------SDIALLQIQNPS  122 (245)
T ss_dssp             -CCEEEEEETTTTEEEECGGGC---------CEEEECTT--------SCEEEEEEEEEETT-------TTEEEEEESSCC
T ss_pred             ceEEEEEEeCCCCEEEEcHHHhCCC-----CEEEEEECC--------CCEEEEEEEEecCC-------CCEEEEEeccCC
Confidence            46999999998  999999999752     245566542        23455555666664       699999997643


Q ss_pred             CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccC
Q psy2626         218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS  297 (355)
Q Consensus       218 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~  297 (355)
                          .+.++.|....    ....++.+++.||....     ........+.....   .. +   .......+++.    
T Consensus       123 ----~~~~~~l~~s~----~~~~G~~v~aiG~P~g~-----~~~vt~G~vs~~~~---~~-~---~~~~~~~~i~t----  178 (245)
T 3sti_A          123 ----KLTQIAIADSD----KLRVGDFAVAVGNPFGL-----GQTATSGIVSALGR---SG-L---NLEGLENFIQT----  178 (245)
T ss_dssp             ----SCCCCCBCCGG----GCCTTBEEEEEECGGGS-----CCEEEEEEEEECSS---CS-S---CCTTCSSCEEE----
T ss_pred             ----CCceeeecCcC----CCCCCCEEEEEECCCCC-----CCcEEeeEEeeecc---cc-c---CCCCccCEEEE----
Confidence                35677776432    34578889999985432     11222222222221   10 1   11122345665    


Q ss_pred             CCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCC-CCCCCcEEEeCcccHHHHHhHh
Q psy2626         298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA-EVGFPGVYTRVTNYIQWIADNI  354 (355)
Q Consensus       298 ~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~-~~~~p~vyt~V~~y~~WI~~~i  354 (355)
                       +...|.|+|||||+... +  .|+||+|+...-. ....-+....+....+++++.+
T Consensus       179 -da~i~~G~SGGPLvn~~-G--~vVGI~s~~~~~~~~~~g~~faIP~~~~~~~~~~l~  232 (245)
T 3sti_A          179 -DASINRGNSGGALLNLN-G--ELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLI  232 (245)
T ss_dssp             -SSCCCTTTTTSEEECTT-S--CEEEEEECCC------CCCEEEEEHHHHHHHHHHHH
T ss_pred             -cCCcCCCcchhHeecCC-C--eEEEEEEeEECCCCCcceEEEEEeHHHHHHHHHHHH
Confidence             34678999999999533 2  5999999976522 1112344566666667776654

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=99.52  E-value=7.9e-14  Score=117.82  Aligned_cols=161  Identities=20%  Similarity=0.223  Sum_probs=96.9

Q ss_pred             eeee-EEEEeC---CEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCC
Q psy2626         140 WMCG-GALITK---RYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRE  215 (355)
Q Consensus       140 ~~C~-GtLIs~---~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~  215 (355)
                      +.|+ |.++.+   .|||||+||+...       ..+.++.      .....-.+..    ..|    ..+|||||||+.
T Consensus        12 ~~CT~Gfiv~~~g~~~ilT~~Hv~~~~-------~~v~~~~------~~~~~g~~~~----~~~----~~~DiAlikl~~   70 (187)
T 1hpg_A           12 SRCSAAFNVTKGGARYFVTAGHCTNIS-------ANWSASS------GGSVVGVREG----TSF----PTNDYGIVRYTD   70 (187)
T ss_dssp             EEEECCEEEEETTEEEEEECHHHHTTC-------SEEESST------TCCEEEEEEE----EEC----SBSCEEEEEECS
T ss_pred             CcCcceEEEEECCeeEEEECcccCCCC-------CeEEeCC------CceeEEEEeC----ccC----CCCCEEEEEeCC
Confidence            5798 888877   4999999999651       1233221      0000001111    111    137999999998


Q ss_pred             CCCCCCCccc-----cccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCe
Q psy2626         216 DAPLSDLIQP-----ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENI  290 (355)
Q Consensus       216 ~v~~~~~v~p-----icLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~  290 (355)
                      ++.+...+..     +.+...    .....++.+...||....    ....+......+.        +.   .....+|
T Consensus        71 ~~~~~~~v~~~~g~~~~i~~~----~~~~~G~~v~~~G~~~g~----t~G~v~~~~~~v~--------~~---~~~~~~~  131 (187)
T 1hpg_A           71 GSSPAGTVDLYNGSTQDISSA----ANAVVGQAIKKSGSTTKV----TSGTVTAVNVTVN--------YG---DGPVYNM  131 (187)
T ss_dssp             SCCCCSEEECSSSCEEECCEE----CCCCTTCEEEEEETTTEE----EEEEEEEEEEEEE--------ET---TEEEEEE
T ss_pred             CCCcCceEEecCCceeeeccc----cCCCCCCEEEEEEcCCCE----eEEEEEEeEEEEE--------eC---CCeEeee
Confidence            7665433221     222211    134578888889986421    1122333333321        11   0113457


Q ss_pred             EEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeCcccHHHH
Q psy2626         291 LCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWI  350 (355)
Q Consensus       291 ~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V~~y~~WI  350 (355)
                      +|+.     ..+|+|||||||+..  +  .++||+|++.. |.. ..|++|++|..+++.+
T Consensus       132 i~t~-----~~~~~GdSGgpl~~~--~--~~vGi~s~~~~~~~~-~~~~~~~~i~~~~~~l  182 (187)
T 1hpg_A          132 VRTT-----ACSAGGDSGGAHFAG--S--VALGIHSGSSGCSGT-AGSAIHQPVTEALSAY  182 (187)
T ss_dssp             EEEC-----CCCCTTCTTCEEEET--T--EEEEEEEEESCCBTT-BCCCEEEEHHHHHHHH
T ss_pred             EEec-----cccCCCCCCCeEEEC--C--EEEEEEEeeCCCCCC-CCceEEEEHHHHHHHc
Confidence            8874     567899999999964  2  79999999976 765 5699999999998765

>2ikd_A Prophenoloxidase activating proteinase-2; beta-sheet, double helix, hydrolase; NMR {Manduca sexta}

Probab=99.52  E-value=6.1e-15  Score=101.46  Aligned_cols=58  Identities=34%  Similarity=0.854  Sum_probs=53.2

Q ss_pred             CCCCCCCCCCCcceEeecccCHHHHHHhhcCCCChhhhhccccccccCCCCCceeeCC
Q psy2626           6 DDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCP   63 (355)
Q Consensus         6 ~~~~C~~~~~~~g~C~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~vCC~   63 (355)
                      -+..|++|+++.|+||++++|++++++|++..+++++.+||++++||+.++.++||||
T Consensus         9 ~~~~C~tp~g~~G~CV~i~~C~~l~~il~~~~~t~~~~~fLr~s~CG~~~~~plVCCP   66 (66)
T 2ikd_A            9 MGQACTLPNNDKGTCKSLLQCDVASKIISKKPRTAQDEKFLRESACGFDGQTPKVCCP   66 (66)
T ss_dssp             --CEECCTTCSCEEEECTTTCHHHHHHHHHSCCCHHHHHHHHHTCSCCCSSSCCEEEC
T ss_pred             ccccCcCCCCCCEEEeeHHHCHHHHHHHhcCCCCHHHHHHHHHccCCCCCCceeeeCc
Confidence            3567999999999999999999999999888889999999999999998889999997

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=99.40  E-value=1e-13  Score=117.05  Aligned_cols=155  Identities=21%  Similarity=0.259  Sum_probs=90.5

Q ss_pred             eeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCC
Q psy2626         140 WMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPL  219 (355)
Q Consensus       140 ~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~  219 (355)
                      ..|+.-.|-.++||||+||+...     .  .|.+.  +      . .      +++.+|    ..+|||||||+.++.+
T Consensus        15 ~~CT~Gf~~~~~ilTa~Hc~~~~-----~--~v~~~--d------g-~------v~~~~~----~~~DiAlikl~~~~~~   68 (189)
T 2ea3_A           15 SRCSIGFAVNGGFITAGHCGRTG-----A--TTANP--T------G-T------FAGSSF----PGNDYAFVRTGAGVNL   68 (189)
T ss_dssp             EEEECCEEETTEEEECGGGCCTT-----C--EEETT--T------E-E------EEEEEC----SBSCEEEEEECTTCEE
T ss_pred             CCCccCEEccCeEEEchhcCCCC-----C--EEEeC--C------c-E------EEeeCC----CCCCEEEEEECCCCcc
Confidence            57997666667999999998641     1  13321  0      1 1      112222    1379999999988766


Q ss_pred             CCCcc-----ccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhc-CCCCCCCCeEEe
Q psy2626         220 SDLIQ-----PICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN-YGATINENILCA  293 (355)
Q Consensus       220 ~~~v~-----picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-~~~~~~~~~~Ca  293 (355)
                      ++.++     ++.|+...    ....++.  +..||.+..       +....+..++....   +.. .-..+...++|+
T Consensus        69 ~~~v~~~~g~~v~l~~s~----~~~vG~~--v~~~G~~tG-------~t~G~Vs~~~~~v~---~~~~~~~~~~~~~~~~  132 (189)
T 2ea3_A           69 LAQVNNYSGGRVQVAGHT----AAPVGSA--VCRSGSTTG-------WHCGTITALNSSVT---YPEGTVRGLIRTTVCA  132 (189)
T ss_dssp             EEEEECSSSCEEECCBCC----CCCTTCE--EEEEETTTE-------EEEEEEEEEEEEEE---ETTEEEEEEEEESCCC
T ss_pred             ccceEecCCceeecCCCc----CCCCCCE--EEEEEeCCc-------cEEEEEEecceEEE---eCCccCcceEEeeeec
Confidence            66555     56666422    2334443  446665421       22233332222111   000 000122233454


Q ss_pred             cccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeCcccHHHH
Q psy2626         294 GVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWI  350 (355)
Q Consensus       294 ~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V~~y~~WI  350 (355)
                      .         +|||||||++  ++  .++||+|++.. |+. ..|++|++|..+++|.
T Consensus       133 ~---------~GDSGgpl~~--~~--~~vGi~s~~~~~c~~-~~~~~~~pi~~~l~~~  176 (189)
T 2ea3_A          133 E---------PGDSGGSLLA--GN--QAQGVTSGGSGNCRT-GGTTFFQPVNPILQAY  176 (189)
T ss_dssp             C---------TTCTTCEEEE--TT--EEEEEEEEEEEETTT-EEEEEEEEHHHHHHHH
T ss_pred             c---------CCCccCeEEE--CC--EEEEEEeecCCCCCC-CCcEEEEEHHHHHHHC
Confidence            3         6999999996  23  68999999976 664 3589999999999886

>2ike_A Prophenoloxidase activating proteinase-2; beta-sheet, double helix, hydrolase; NMR {Manduca sexta}

Probab=99.38  E-value=2.3e-13  Score=90.23  Aligned_cols=53  Identities=34%  Similarity=0.676  Sum_probs=48.8

Q ss_pred             CCCCCCCCcceEeecccCHHHHHHhhcCCCChhhhhccccccccCCCCCceeeCC
Q psy2626           9 LCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCP   63 (355)
Q Consensus         9 ~C~~~~~~~g~C~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~vCC~   63 (355)
                      .|.+|+++.|.||++++|++++++| +..+++++.+||++++||+ +..++||||
T Consensus         2 ~C~tp~~~~G~Cv~i~~C~~~~~~l-~~~~~~~~~~~l~~s~Cg~-~~~~~VCCp   54 (54)
T 2ike_A            2 SCLTPDNKPGKCVNIKKCTHLAEIE-EDPIGEDETTYLKNSVCAG-PEDNSVCCG   54 (54)
T ss_dssp             EEECTTCCEEEEEETTTCHHHHHHH-HSCCCHHHHHHHHHTBSSS-SCSSEEEEC
T ss_pred             CCcCCCCCcEEEeeHHHChHHHHHh-ccCCCHHHHHHHHHccCCC-CCCCeEeCc
Confidence            5999999999999999999999999 5567899999999999998 778999997

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.35  E-value=1.8e-11  Score=113.14  Aligned_cols=144  Identities=19%  Similarity=0.233  Sum_probs=90.3

Q ss_pred             ceeeeEEEEeCC--EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCC
Q psy2626         139 EWMCGGALITKR--YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRED  216 (355)
Q Consensus       139 ~~~C~GtLIs~~--~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~  216 (355)
                      ...++|.+|+++  ||||+|||+...     ....|.+..        ...+..+-+..||.       +||||||++.+
T Consensus        62 ~~~GSGfiI~~~~G~IlTnaHVv~~~-----~~i~V~~~d--------g~~~~a~vv~~d~~-------~DlAlLkv~~~  121 (345)
T 3stj_A           62 EGLGSGVIINASKGYVLTNNHVINQA-----QKISIQLND--------GREFDAKLIGSDDQ-------SDIALLQIQNP  121 (345)
T ss_dssp             EEEEEEEEEETTTTEEEECHHHHTTE-----EEEEEECTT--------SCEEEEEEEEEETT-------TTEEEEEESSC
T ss_pred             ceeEEEEEEECCCCEEEEChHHhCCC-----CEEEEEeCC--------CcEEEEEEEEEcCC-------CCEEEEEEccc
Confidence            357999999997  999999999751     234555532        34566777777775       69999999765


Q ss_pred             CCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEeccc
Q psy2626         217 APLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVL  296 (355)
Q Consensus       217 v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~  296 (355)
                      .    .+.++.|....    ....++.+++.||.....     .......+.-...   .. +   ...-...+++.   
T Consensus       122 ~----~~~~~~l~~s~----~~~~G~~V~aiG~p~g~~-----~~vt~G~Vs~~~~---~~-~---~~~~~~~~iq~---  178 (345)
T 3stj_A          122 S----KLTQIAIADSD----KLRVGDFAVAVGNPFGLG-----QTATSGIVSALGR---SG-L---NLEGLENFIQT---  178 (345)
T ss_dssp             C----SCCCCCBCCGG----GCCTTBEEEEEECGGGCS-----CEEEEEEEEEEEE---CC-S---SSSSSCCEEEE---
T ss_pred             C----CCceEeecCcc----cCCCCCEEEEEECCCCCC-----CcEEeeEEeeecc---cc-c---CCCCccCEEEE---
Confidence            3    35566665432    346788899999964321     1122222221111   10 0   01112344554   


Q ss_pred             CCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC
Q psy2626         297 SGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK  330 (355)
Q Consensus       297 ~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~  330 (355)
                        +...|.|+|||||+...+   .++||+++...
T Consensus       179 --da~i~~GnSGGPLvn~~G---~vVGI~s~~~~  207 (345)
T 3stj_A          179 --DASINRGNSGGALLNLNG---ELIGINTAILA  207 (345)
T ss_dssp             --CSCCCTTCTTCEEECTTS---CEEEEEEEEEC
T ss_pred             --ecccCCCcCccceeCCCC---EEEEEEecccc
Confidence              456799999999995432   49999987544

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.16  E-value=1.1e-09  Score=104.41  Aligned_cols=144  Identities=18%  Similarity=0.244  Sum_probs=90.1

Q ss_pred             ceeeeEEEEeCC--EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCC
Q psy2626         139 EWMCGGALITKR--YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRED  216 (355)
Q Consensus       139 ~~~C~GtLIs~~--~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~  216 (355)
                      ...++|.+|+++  ||||+|||+...     ....|.+..        ...+..+-+..||.       +||||||++.+
T Consensus        62 ~~~GSGfii~~~~G~IlTn~Hvv~~a-----~~i~V~~~d--------g~~~~a~vv~~d~~-------~DlAllkv~~~  121 (436)
T 4a8c_A           62 EGLGSGVIINASKGYVLTNNHVINQA-----QKISIQLND--------GREFDAKLIGSDDQ-------SDIALLQIQNP  121 (436)
T ss_pred             ceEEEEEEEECCCCEEEECHHHhCCC-----CEEEEEeCC--------CCEEEEEEEEEcCC-------CCEEEEEecCC
Confidence            357999999997  999999999752     245565532        24566666777775       69999999764


Q ss_pred             CCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEeccc
Q psy2626         217 APLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVL  296 (355)
Q Consensus       217 v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~  296 (355)
                      .    .+.++.|....    ....++.+++.||....     ........+.-+..   .. +.   ..-...++..   
T Consensus       122 ~----~l~~~~l~~s~----~~~~G~~v~aiG~P~g~-----~~~vt~G~vs~~~r---~~-~~---~~~~~~~iq~---  178 (436)
T 4a8c_A          122 S----KLTQIAIADSD----KLRVGDFAVAVGNPFGL-----GQTATSGIVSALGR---SG-LN---LEGLENFIQT---  178 (436)
T ss_pred             C----CCceEeccCcc----cCCCCCEEEEEEcCCCC-----CccEEEEEEeeecc---cc-cC---CCCccCEEEE---
Confidence            3    45677776433    34578889999996432     11122222222211   10 00   0111233433   


Q ss_pred             CCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC
Q psy2626         297 SGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK  330 (355)
Q Consensus       297 ~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~  330 (355)
                        +...+.|+|||||+...+   .++||.++...
T Consensus       179 --da~i~~GnSGGPl~n~~G---~vvGI~~~~~~  207 (436)
T 4a8c_A          179 --DASINRGNAGGALLNLNG---ELIGINTAILA  207 (436)
T ss_pred             --cCccCCCCCcCcccCCCC---EEEEEEeeecc
Confidence              356789999999995432   69999988654

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=99.12  E-value=8.4e-12  Score=104.94  Aligned_cols=40  Identities=30%  Similarity=0.509  Sum_probs=32.0

Q ss_pred             cCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeCcccHH
Q psy2626         304 GGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQ  348 (355)
Q Consensus       304 ~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V~~y~~  348 (355)
                      +|||||||++  ++  .++||+||+.. |... .+++|++|..+++
T Consensus       137 ~GDSGgpl~~--~~--~~vGi~s~g~~~c~~~-~~~~~~pi~~~l~  177 (186)
T 2pfe_A          137 GGDSGGPWLT--GS--QAQGVTSGGTGDCRSG-GITFFQPINPLLS  177 (186)
T ss_dssp             TTCTTCEEEE--TT--EEEEEEEEEEEETTTE-EEEEEEEHHHHHH
T ss_pred             CCCccCeEEE--CC--EEEEEEeecCCCCCCC-CcEEEEEHHHHHH
Confidence            6999999996  23  68999999975 6543 4799999988765

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.11  E-value=9.5e-10  Score=105.21  Aligned_cols=169  Identities=15%  Similarity=0.143  Sum_probs=95.7

Q ss_pred             ceeeeEEEEeC--CEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCC
Q psy2626         139 EWMCGGALITK--RYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRED  216 (355)
Q Consensus       139 ~~~C~GtLIs~--~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~  216 (355)
                      ...++|.+|++  .||||+|||+.+.     ....|.+..        ...+..+-+..||.       +||||||++. 
T Consensus        76 ~~~GSGfiI~~~~G~IlTn~HVv~~a-----~~i~V~~~d--------g~~~~a~vv~~d~~-------~DlAlLkv~~-  134 (451)
T 3pv2_A           76 ESIGSGVIIDPNNGVIITNDHVIRNA-----SLITVTLQD--------GRRLKARLIGGDSE-------TDLAVLKIDA-  134 (451)
T ss_dssp             EEEEEEEEEETTTTEEEECHHHHTTE-----EEEEEECTT--------SCEEECEEEEEETT-------TTEEEEECCC-
T ss_pred             ceeEEEEEEECCCCEEEEChHHhCCC-----CEEEEEEcC--------CCEEEEEEEecCcC-------CcEEEEEEcC-
Confidence            35799999997  4999999999751     235555532        34566667777775       6999999963 


Q ss_pred             CCCCCCccccccCCCCCccccccCCCceEEEE--eccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEec
Q psy2626         217 APLSDLIQPICLPYDTNLRSELFERKTPFVAG--WGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAG  294 (355)
Q Consensus       217 v~~~~~v~picLp~~~~~~~~~~~~~~~~v~G--wG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~  294 (355)
                          ..+.++.|....    ....++.+++.|  ||.....  .........+....+...    ..   .-...+++. 
T Consensus       135 ----~~l~~~~l~~s~----~~~~G~~V~aiG~P~G~~~~~--~~~~vt~Givs~~~r~~~----~~---~~~~~~iqt-  196 (451)
T 3pv2_A          135 ----KNLKSLVIGDSD----KLEVGDFVVAIGNPFGLNSFG--NSQSATFGIVSALKRSDL----NI---EGVENFIQT-  196 (451)
T ss_dssp             ----SSCCCCCBCCGG----GCCTTCEEEEEECCCCC-------CCEEEEEEEEEEC-----------------CCEEE-
T ss_pred             ----cCCceeEecCcc----cCCCCCEEEEEECCCCccccc--cCCceeEEEEeecccccc----CC---CCcceEEEE-
Confidence                345566665332    345788999999  5543211  112233333333332210    00   111234554 


Q ss_pred             ccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeCcccHHHHHhH
Q psy2626         295 VLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQWIADN  353 (355)
Q Consensus       295 ~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~  353 (355)
                          +...+.|+|||||+...+   .++||.++... .+....-+....+.....++++.
T Consensus       197 ----da~i~~GnSGGPl~n~~G---~VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~~~l  249 (451)
T 3pv2_A          197 ----DAAINPGNSGGALVNAKG---ELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQI  249 (451)
T ss_dssp             ----SSCCCGGGTTSEEEETTC---CEEEEEECCC------CCCEEEEEHHHHHHHHHHH
T ss_pred             ----ecccCCCCCcCcccCCCC---eEEEEEeEeecCCCCccceeeeehhHHHHHHHHHH
Confidence                356789999999995432   49999988654 22211123444554555555543

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=98.99  E-value=2.8e-10  Score=95.84  Aligned_cols=40  Identities=33%  Similarity=0.468  Sum_probs=31.7

Q ss_pred             cCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeCcccHH
Q psy2626         304 GGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNYIQ  348 (355)
Q Consensus       304 ~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V~~y~~  348 (355)
                      +|||||||+.  ++  .++||+|++.. |... .+++|++|..+++
T Consensus       140 ~GDSGgpl~~--~~--~~vGi~s~~~~~~~~~-~~~~~~pi~~~l~  180 (188)
T 2oua_A          140 PGDSGGSFIS--GT--QAQGVTSGGSGNCRTG-GTTFYQEVNPMLN  180 (188)
T ss_dssp             TTCTTCEEEE--TT--EEEEEEEEEEEETTTE-EEEEEEESHHHHH
T ss_pred             CCCccceEEE--CC--EEEEEEeccCCCCCCC-CceEEEEHHHHHH
Confidence            6999999995  33  69999999875 7653 3789999987764

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.85  E-value=7.8e-08  Score=91.82  Aligned_cols=144  Identities=18%  Similarity=0.209  Sum_probs=85.1

Q ss_pred             ceeeeEEEEeCC--EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCC
Q psy2626         139 EWMCGGALITKR--YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRED  216 (355)
Q Consensus       139 ~~~C~GtLIs~~--~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~  216 (355)
                      ...|+|.+|+++  ||||++||+...     ..+.|.+..        ...+..+-+..++.       .||||||++.+
T Consensus        85 ~~~GSG~ii~~~~g~IlTn~HVv~~a-----~~i~V~~~d--------g~~~~a~vv~~d~~-------~DlAvlkv~~~  144 (448)
T 1ky9_A           85 MALGSGVIIDADKGYVVTNNHVVDNA-----TVIKVQLSD--------GRKFDAKMVGKDPR-------SDIALIQIQNP  144 (448)
T ss_dssp             EEEEEEEEEETTTTEEEEEHHHHTTE-----EEEEEEETT--------SCEEEEEEEEEETT-------TTEEEEEESSC
T ss_pred             ccEEEEEEEECCCCEEEEChHHhCCC-----CEEEEEECC--------CCEEEEEEEEEcCC-------CCEEEEEecCC
Confidence            357999999975  999999999651     245566542        12344443444443       79999999854


Q ss_pred             CCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEeccc
Q psy2626         217 APLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVL  296 (355)
Q Consensus       217 v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~  296 (355)
                      -    .+.++.|....    ....++..++.||....     ........+.-..+..    ..   ..-...+++.   
T Consensus       145 ~----~~~~~~l~~s~----~~~~G~~V~aiG~P~g~-----~~tvt~Givs~~~r~~----~~---~~~~~~~iqt---  201 (448)
T 1ky9_A          145 K----NLTAIKMADSD----ALRVGDYTVAIGNPFGL-----GETVTSGIVSALGRSG----LN---AENYENFIQT---  201 (448)
T ss_dssp             C----SCCCCCBCCGG----GCCTTCEEEEEECTTSS-----SCEEEEEEEEEESSCC------------CCCCEEE---
T ss_pred             C----CCceEEecccc----cCCCCCEEEEEECCCCC-----CCeEEeEEEeeccccc----cC---CCCccCEEEE---
Confidence            2    34555554322    34578888999975432     1122222232222110    00   0011234544   


Q ss_pred             CCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC
Q psy2626         297 SGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK  330 (355)
Q Consensus       297 ~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~  330 (355)
                        +...+.|+|||||+...+   .++||.+....
T Consensus       202 --da~i~~GnSGGpl~n~~G---~vvGI~~~~~~  230 (448)
T 1ky9_A          202 --DAAINRGNAGGALVNLNG---ELIGINTAILA  230 (448)
T ss_dssp             --SCCCTTSCCCSEEECTTS---CEEEEEECSST
T ss_pred             --cCCCCCCCCCCeeECCCC---EEEEEEEEeec
Confidence              356789999999996433   59999997643

>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A

Probab=98.41  E-value=4.3e-06  Score=85.21  Aligned_cols=171  Identities=16%  Similarity=0.205  Sum_probs=92.1

Q ss_pred             eeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCC
Q psy2626         142 CGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD  221 (355)
Q Consensus       142 C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~  221 (355)
                      --+|||+|+||+|+||= ..     +  ..|.+|. .      ...+.|   +.|++|..    .|++++||.+.|.   
T Consensus        58 G~aTLI~pqYiVSvaHn-~g-----y--~~v~fG~-~------~n~Y~i---V~rnn~~~----~Dy~~pRL~K~VT---  112 (1048)
T 1wxr_A           58 GVATLINPQYIASVKHN-GG-----Y--TNVSFGD-G------ENRYNI---VDRNNAPS----LDFHAPRLDKLVT---  112 (1048)
T ss_dssp             CCCEEEETTEEEBCTTC-CS-----C--CEECCTT-S------CCCEEE---EECCBCSS----SSCBCCEESSCCC---
T ss_pred             ceEEEEcCcEEEEeeec-CC-----C--ceEEeCC-C------cceEEE---EeeCCCCC----CCeeeeecccccc---
Confidence            56899999999999992 21     1  3466665 1      113333   78888753    4999999999886   


Q ss_pred             CccccccCCCCC---ccccccCCCceEEEEeccCCCCCCC---------CccceEEEEeeeChhHHHhhhhcCCCCCCCC
Q psy2626         222 LIQPICLPYDTN---LRSELFERKTPFVAGWGSTVFRGPL---------SPKLRHVQISVVDNPKCRQIFSNYGATINEN  289 (355)
Q Consensus       222 ~v~picLp~~~~---~~~~~~~~~~~~v~GwG~~~~~~~~---------~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~  289 (355)
                      .+.||-+.....   ..........++-+|=|........         -..+.-..+...+             .....
T Consensus       113 EvaP~~~t~~g~~~~~y~d~ery~~f~RvGsG~q~~~~~ng~~~~l~~aY~yltGGt~~~~~-------------~~~~~  179 (1048)
T 1wxr_A          113 EVAPTAVTAQGAVAGAYLDKERYPVFYRLGSGTQYIKDSNGQLTKMGGAYSWLTGGTVGSLS-------------SYQNG  179 (1048)
T ss_dssp             SSCCCCBCSSCSCTTGGGCTTTCCCEEEEECSCEEEECTTCCEEEEECTTSSCEEEEECCCE-------------EETTT
T ss_pred             cccceeeccccCccccccccccCceEEEECCcEEEEEcCCCceeEccccceEEecccccCcc-------------ccCCc
Confidence            477887765431   1111223445566777765211100         0111111111000             00111


Q ss_pred             eEE-ec--c-------cCCCCCCCcCCCCCcceeee--CCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHhHh
Q psy2626         290 ILC-AG--V-------LSGGKDSCGGDSGGPLMYPL--DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI  354 (355)
Q Consensus       290 ~~C-a~--~-------~~~~~~~C~GDsGgPL~~~~--~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i  354 (355)
                      .+. ..  .       ..-....-.||||+||+..+  .++|+|+|+.|.|..-+..+  ..|.-+..  +|+.+++
T Consensus       180 ~li~~~~g~~f~~~~~~PL~~~~~~GDSGSPlF~yD~~~kKWvLvGv~s~g~~~g~~~--~~~~~~~~--~f~~~~~  252 (1048)
T 1wxr_A          180 EMISTSSGLVFDYKLNGAMPIYGEAGDSGSPLFAFDTVQNKWVLVGVLTAGNGAGGRG--NNWAVIPL--DFIGQKF  252 (1048)
T ss_dssp             TEEEECTTCTTCHHHHCSSBCBCCTTCTTCEEEEEETTTTEEEEEEEEEEESSTTCSC--EEEEECCH--HHHHHHH
T ss_pred             eEEeccCCcccccccCCcccCCCCCCCCCCeeeEEEcCCCeEEEEEEecccccCCccc--ceEEEeCH--HHhhhhh
Confidence            122 00  0       00022345799999999887  68999999998554312111  33444433  6776544

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}

Probab=98.39  E-value=3.3e-06  Score=69.01  Aligned_cols=79  Identities=20%  Similarity=0.124  Sum_probs=47.6

Q ss_pred             ceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCC
Q psy2626         139 EWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAP  218 (355)
Q Consensus       139 ~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~  218 (355)
                      ....+|.+| +.||||++||+.+.     ....|+++         ...+..+ ++..|       ..||||||++... 
T Consensus        20 ~~~GSGfii-~g~IlTn~HVV~~~-----~~i~V~~d---------g~~~~a~-vv~d~-------~~DlAlLkv~~~~-   75 (163)
T 2w5e_A           20 EGKGTGFFS-GNDIVTAAHVVGNN-----TFVNVCYE---------GLMYEAK-VRYMP-------EKDIAFITCPGDL-   75 (163)
T ss_dssp             TEEEEEEEE-TTEEEEEHHHHTTC-----SEEEEEET---------TEEEEEE-EEECC-------SSSEEEEECCTTC-
T ss_pred             ceeEEEEEE-CCEEEecHHHhCCC-----ceEEEEEC---------CEEEEEE-EEEEC-------CCCEEEEEecCCC-
Confidence            357999999 99999999999752     23455541         1233333 33333       3799999998643 


Q ss_pred             CCCCccccccCCCCCccccccCCCceEEEEec
Q psy2626         219 LSDLIQPICLPYDTNLRSELFERKTPFVAGWG  250 (355)
Q Consensus       219 ~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG  250 (355)
                        ..+.|+.|....       .....++.|+.
T Consensus        76 --~~~~~l~l~~~~-------~~~~v~~~G~p   98 (163)
T 2w5e_A           76 --HPTARLKLSKNP-------DYSCVTVMAYV   98 (163)
T ss_dssp             --CCSCCCCBCSSC-------CTTEEEEEEEE
T ss_pred             --CCcceEEcCCCC-------CCCEEEEEEeC
Confidence              233444454221       12455677775

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=98.31  E-value=3.5e-06  Score=71.25  Aligned_cols=41  Identities=27%  Similarity=0.465  Sum_probs=26.8

Q ss_pred             cCCCCCcceeeeCCeEEEEEEEEeCC-----C-CCC--CCCCcEEEeCcccH
Q psy2626         304 GGDSGGPLMYPLDTKYYIIGVVSYGK-----K-CAE--VGFPGVYTRVTNYI  347 (355)
Q Consensus       304 ~GDsGgPL~~~~~~~~~lvGI~S~g~-----~-C~~--~~~p~vyt~V~~y~  347 (355)
                      +|||||||+... +  .++||+|++.     . |..  ...-+.|..|...+
T Consensus       140 ~GDSGGPl~~~~-g--~~vGI~s~~~~~~~~~~c~~~~~~g~~f~~Pi~~vl  188 (198)
T 2h5c_A          140 RGDSGGSWITSA-G--QAQGVMSGGNVQSNGNNCGIPASQRSSLFERLQPIL  188 (198)
T ss_dssp             TTCTTCEEECTT-C--BEEEEEEEECCCTTSBSTTSCGGGCCEEEEEHHHHH
T ss_pred             CCcceeEEEeeC-C--EEEEEEEeecCccCCCccccccCCceEEEEEHHHHH
Confidence            699999999422 2  6999999985     3 521  11235677665544

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=98.30  E-value=6.6e-06  Score=79.64  Aligned_cols=146  Identities=18%  Similarity=0.109  Sum_probs=76.3

Q ss_pred             eeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCC
Q psy2626         140 WMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPL  219 (355)
Q Consensus       140 ~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~  219 (355)
                      ..-+|.+|++.+|||.+|.+.+.     ....|.+-.       +...+..+-+...|.       .||||||++.+-. 
T Consensus        74 s~GSGfiI~dG~IlTN~HVV~~a-----~~i~V~~~~-------dg~~~~A~vv~~D~~-------~DLAvLkv~~~~~-  133 (539)
T 4fln_A           74 STGSAFMIGDGKLLTNAHCVEHD-----TQVKVKRRG-------DDRKYVAKVLVRGVD-------CDIALLSVESEDF-  133 (539)
T ss_dssp             EEEEEEEEETTEEEECGGGGTTE-----EEEEEECTT-------CCCCEEEEEEEEETT-------TTEEEEEECCSSS-
T ss_pred             eEEEEEEEECCEEEEChHHcCCC-----CeEEEEEcc-------CCEEEEEEEEEECCC-------CCEEEEEEeCCcC-
Confidence            46899999999999999999651     234454311       112233333334443       6999999975422 


Q ss_pred             CCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCC
Q psy2626         220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGG  299 (355)
Q Consensus       220 ~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~  299 (355)
                      ...+.|+.+...      ...+...++.|+.....    ........+.-+...    .+.     .....+-.-  .-+
T Consensus       134 ~~~~~pl~~g~~------~~vGd~V~aiG~P~g~~----~~tvT~GIVSa~~r~----~~~-----~~~~~~~~I--QtD  192 (539)
T 4fln_A          134 WKGAEPLRLGHL------PRLQDSVTVVGYPLGGD----TISVTKGVVSRIEVT----SYA-----HGSSDLLGI--QID  192 (539)
T ss_dssp             STTCCCCCBCCC------CCTTCEEEEEECCSSSC----CCEEEEEEEEEEEEE----ECT-----TSCCEEEEE--EES
T ss_pred             CcCCceeecCCc------CcCCCeEEEEEcCCCCC----CCcEEeEEECccccc----ccC-----CCCcceeEE--EEE
Confidence            223445544322      23567778888753211    111111112111110    000     011111000  113


Q ss_pred             CCCCcCCCCCcceeeeCCeEEEEEEEEeCC
Q psy2626         300 KDSCGGDSGGPLMYPLDTKYYIIGVVSYGK  329 (355)
Q Consensus       300 ~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~  329 (355)
                      ...-.|.|||||+-..+   .+|||.+...
T Consensus       193 AaInpGnSGGPLvn~~G---eVIGIntai~  219 (539)
T 4fln_A          193 AAINPGNSGGPAFNDQG---ECIGVAFQVY  219 (539)
T ss_dssp             SCCCTTTTTSEEECSSS---CEEEEECCCC
T ss_pred             eEecCCCccchhccCCC---cEEEEEEEEe
Confidence            44567999999995443   5999987654

>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}

Probab=98.18  E-value=7.7e-07  Score=74.35  Aligned_cols=161  Identities=14%  Similarity=0.041  Sum_probs=80.8

Q ss_pred             ceeeeEEEE---eCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCC
Q psy2626         139 EWMCGGALI---TKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRE  215 (355)
Q Consensus       139 ~~~C~GtLI---s~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~  215 (355)
                      .+.|.|+.+   ...++||||||+....   ......+ .         ...+++...-  +.|.......|+||+++..
T Consensus        26 ~h~G~g~~V~~~G~~~LlTA~Hv~~~~~---~~~~~~k-~---------g~~ip~~~~~--~~~~~~d~~~D~all~vp~   90 (191)
T 1zyo_A           26 TTIGFGCRTKIDGEDCLLTAHHVWCNSM---RPTGLAK-A---------GKQVSVEDWE--ISMSSSDKMLDFAIVRVPT   90 (191)
T ss_dssp             EEEEEEEEEEC--CEEEEECHHHHTSSS---CCCEEEE-T---------TEEEECCSCE--EEEEECCTTTCEEEEECCH
T ss_pred             eEEEEEEEEEECCCcEEEEChhhCcCCc---ceeeecC-C---------CCEEEcccce--eeEccCCCCCcEEEEEcCC
Confidence            689999999   5679999999986521   1111111 1         1111111110  1122223347999999976


Q ss_pred             CCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecc
Q psy2626         216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGV  295 (355)
Q Consensus       216 ~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~  295 (355)
                      .+.-.-.++++-|-.       ...+...++.|+....       .+... ..+..             .....++-.- 
T Consensus        91 ~~~s~lg~~~a~~~~-------~~~~~~vt~yg~~~~~-------~~~s~-~g~~~-------------~~~~~~~~~~-  141 (191)
T 1zyo_A           91 HVWSKLGVKSTPLVC-------PSSKDVITCYGGSSSD-------CLMSG-VGSSS-------------TSEFTWKLTH-  141 (191)
T ss_dssp             HHHHHHTCCCCCBCC-------CCSCEEEEEEEESSTT-------SEEEE-EEEEE-------------ECSSTTEEEE-
T ss_pred             ChhhhcCcceeEeec-------CCCCccEEEEeecCCC-------CEeec-cccee-------------eccCCcEEEE-
Confidence            543111123322211       1135566777775321       11111 11000             0000111110 


Q ss_pred             cCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHhH
Q psy2626         296 LSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN  353 (355)
Q Consensus       296 ~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  353 (355)
                         ...+-.|+||+|++...    -+|||..-+..-+.   -..-++++.+.+||...
T Consensus       142 ---~~~T~~G~SGsP~~ng~----~IVGvh~G~~~~~~---~N~a~n~~~~~~~~~~~  189 (191)
T 1zyo_A          142 ---TCPTAAGWSGTPLYSSR----GVVGMHVGFEEIGK---LNRGVNMFYVANYLLRS  189 (191)
T ss_dssp             ---CCCCCTTCTTCEEECSS----CEEEEEEEEEETTT---EEEEECHHHHHHHTCCC
T ss_pred             ---EcCCCCCCCCCcEEcCC----eEEEEEeCcccCCc---eeeeeehHHHhhhhhhc
Confidence               23446799999999754    37899976533222   23468899999997543

>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}

Probab=96.64  E-value=0.011  Score=59.78  Aligned_cols=78  Identities=18%  Similarity=0.123  Sum_probs=44.5

Q ss_pred             eeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCC
Q psy2626         142 CGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD  221 (355)
Q Consensus       142 C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~  221 (355)
                      -.+|||+|+||++++|=..        -..|.+|...-..+.....+.+..---|+.-....+..|+.+=||.+-|.   
T Consensus        58 GvATLi~pQYiVSVkHN~g--------y~~v~FG~~~~n~d~h~~~Y~iV~RNn~~~~~~~~~~~Dfh~PRLnK~VT---  126 (1011)
T 3syj_A           58 GVAALVENQYIVSVAHNVG--------YTDVDFGAEGNNPDQHRFTYKIVKRNNYKKDNLHPYEDDYHNPRLHKFVT---  126 (1011)
T ss_dssp             SSCEEEETTEEEBCTTCCS--------CCEECCSCSSCCGGGCCCCEEEEECCBCCCBTTBCSCSCCBCCEESSCCC---
T ss_pred             ceeEEecCceEEEEEecCC--------ccceecccCCCCccccccceEEEeccCCCcccccCcccccccccccceEE---
Confidence            4689999999999999431        13578886432211122234333322111101122335999999998775   


Q ss_pred             CccccccCC
Q psy2626         222 LIQPICLPY  230 (355)
Q Consensus       222 ~v~picLp~  230 (355)
                      -+.||-+..
T Consensus       127 EvaP~~~t~  135 (1011)
T 3syj_A          127 EAAPIDMTS  135 (1011)
T ss_dssp             SSCCCCBCC
T ss_pred             eeccccccc
Confidence            466666543

>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3

Probab=95.98  E-value=0.13  Score=41.91  Aligned_cols=51  Identities=18%  Similarity=0.092  Sum_probs=33.3

Q ss_pred             ceeeeEEEEeCC-EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEe
Q psy2626         139 EWMCGGALITKR-YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRL  213 (355)
Q Consensus       139 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L  213 (355)
                      .-.++|..|+.+ +||||+|=+.+.     ....|++..         +.+.|...   ++       .|+|++++
T Consensus        14 ~G~GsgF~i~~~g~vVTA~HVv~~~-----~~~~V~~~G---------~~~~Vgf~---~~-------~DlA~l~v   65 (198)
T 1mbm_A           14 YGTGSVWTRNNEVVVLTASHVVGRA-----NMATLKIGD---------AMLTLTFK---KN-------GDFAEAVT   65 (198)
T ss_dssp             EEEEEEEEETTEEEEEEEHHHHCTT-----CEEEEEETT---------EEEEEECE---EE-------TTEEEEEE
T ss_pred             CCccceEEECCCeEEEEeeeEEccC-----ceEEEEECC---------EEEEeecc---cC-------CcEEEEEe
Confidence            456999999976 699999998541     234455532         23332211   22       69999999

>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A

Probab=95.02  E-value=0.079  Score=43.94  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=17.5

Q ss_pred             cCCCCCcceeeeCCeEEEEEEEEeCC
Q psy2626         304 GGDSGGPLMYPLDTKYYIIGVVSYGK  329 (355)
Q Consensus       304 ~GDsGgPL~~~~~~~~~lvGI~S~g~  329 (355)
                      .|||||||+-.++   .++||.+...
T Consensus       124 pGdSGsPVvn~dG---~VIGVHt~s~  146 (213)
T 3fan_A          124 CGDSGSPVITEAG---ELVGVHTGSN  146 (213)
T ss_dssp             CCSTTCEEEETTS---CEEEEEEC--
T ss_pred             CCCCCCccCCCCC---cEEEEEeccC
Confidence            4999999997664   5999997643

>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A {Escherichia coli O157}

Probab=94.64  E-value=0.32  Score=49.22  Aligned_cols=56  Identities=20%  Similarity=0.140  Sum_probs=36.6

Q ss_pred             eeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEee-eEeCCCCCCCCCCCCeEEEEeCCCCC
Q psy2626         141 MCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIER-PIIHEQYTSARKLNDIALFRLREDAP  218 (355)
Q Consensus       141 ~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~-i~~hp~y~~~~~~~DIALl~L~~~v~  218 (355)
                      .-.+|||+|+||+|++|=...    ......|.+|..         .+.+.. -..|+         |..+-||.+-|.
T Consensus        56 ~G~aTLv~pQYiVSVkHN~~~----~~gy~~v~FG~~---------~Y~~V~~r~~~~---------Dfh~pRLnK~VT  112 (968)
T 3sze_A           56 KGSTTSIGGAYSITATHNTKN----HHSVATQNWGNS---------TYKQTDWNTSHP---------DFAVSRLDKFVV  112 (968)
T ss_dssp             TSSCEECSTTEEEEEGGGCTT----CHHHHEEEETTE---------EEEEEEEEEETT---------TEEEEEESSCCC
T ss_pred             CceeEEecCceEEEEEecccc----cCcceeEeecCc---------eEEEeccccCCC---------CccccccceeEE
Confidence            356899999999999995421    001345888832         333433 22332         899999998775

>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0

Probab=93.18  E-value=0.43  Score=40.60  Aligned_cols=40  Identities=20%  Similarity=0.410  Sum_probs=28.9

Q ss_pred             CCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcc
Q psy2626         301 DSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN  345 (355)
Q Consensus       301 ~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~  345 (355)
                      ++=.|+-|+||+...++  .+|||.|.+..-..   -..|+.+..
T Consensus       145 sT~~G~CGlPlVs~~Dg--~IVGiHsl~~~~~~---~N~F~~f~~  184 (241)
T 3mmg_A          145 TTKDGQAGSPLVSIIDG--NILGIHSLTHTTNG---SNYFVEFPE  184 (241)
T ss_dssp             CCCTTCTTCEEEETTTC--CEEEEEEEEETTTC---CEEEEECCT
T ss_pred             CCCCCcCCCeEEEcCCC--cEEEEEecccCCCC---cEEEEcCCH
Confidence            44568999999987655  49999998765332   367887765

>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A

Probab=91.29  E-value=0.92  Score=38.30  Aligned_cols=47  Identities=21%  Similarity=0.485  Sum_probs=32.0

Q ss_pred             CCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcc-cHHHHHh
Q psy2626         301 DSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN-YIQWIAD  352 (355)
Q Consensus       301 ~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~-y~~WI~~  352 (355)
                      ++=.||=|.||+...++  .+|||.|.+..-..   -..|+.+.. +.++|..
T Consensus       153 sT~~G~CGlPlVs~~Dg--~IVGiHsl~~~~~~---~NyF~~f~~~f~~~L~~  200 (229)
T 1lvm_A          153 QTKDGQCGSPLVSTRDG--FIVGIHSASNFTNT---NNYFTSVPKNFMELLTN  200 (229)
T ss_dssp             CCCTTCTTCEEEETTTC--CEEEEEEEEETTSC---SEEEEECCTTHHHHHHC
T ss_pred             eCCCCcCCCcEEECCCC--cEEEEEcccccCCC---eEEEeCCCHHHHHHHhc
Confidence            34458889999986655  49999998765332   357888765 4455543

>4ash_A NS6 protease; hydrolase, trypsin-like, calicivirus; 1.58A {Murine norovirus 1}

Probab=86.23  E-value=2.5  Score=32.87  Aligned_cols=38  Identities=29%  Similarity=0.510  Sum_probs=30.1

Q ss_pred             CCCCcCCCCCcceeeeCCeEEEEEEEEeCCC------CCCCCCC
Q psy2626         300 KDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK------CAEVGFP  337 (355)
Q Consensus       300 ~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~------C~~~~~p  337 (355)
                      -.+-.||-|.|.++..++.|+++||...+..      |...+.|
T Consensus       134 LGT~PGDCGcPYvykrgn~~vv~GVHtAatr~gNtVica~~g~~  177 (185)
T 4ash_A          134 LGTIPGDAGCPYVYKKGNTWVVIGVHVAATRSGNTVIAATHGEP  177 (185)
T ss_dssp             CSCCTTCTTCEEEEEETTEEEEEEEEEEECSSSSEEEEECSSCC
T ss_pred             CCCCCCCCCCceEEeeCCceEEEEEEEeeccCCCEEEEEcCCCC
Confidence            4567899999999999999999999876532      5555544

>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta helix, hydrolase, M protease, secreted, transmembrane, virulence; 1.75A {Haemophilus influenzae}

Probab=84.65  E-value=0.66  Score=46.99  Aligned_cols=79  Identities=16%  Similarity=0.103  Sum_probs=48.2

Q ss_pred             eeEEEEeCCEEEeeccccCCCCCCCcCceEEEecccccc--CC---------CCcEEEEEeeeEeCCCCCC-CC------
Q psy2626         142 CGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLE--DT---------SSGVSIEIERPIIHEQYTS-AR------  203 (355)
Q Consensus       142 C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~--~~---------~~~~~~~v~~i~~hp~y~~-~~------  203 (355)
                      --+|||+|+||++.||=-..       -..|.+|...-.  ..         .....+.+.+---||.... ..      
T Consensus        60 gvaTLv~pQYivsVkHn~~g-------y~~v~FG~~~~~~~~~n~~~hr~v~~~~~~Y~~V~rNn~~~~~~~~~~~~~~~  132 (989)
T 3h09_A           60 RIATLINPQYVVGVKHVSNG-------VSELHFGNLNGNMNNGNAKSHRDVSSEENRYFSVEKNEYPTKLNGKAVTTEDQ  132 (989)
T ss_dssp             CCCEEEETTEEEBCTTCCST-------TSEEECSSSCCCTTSTTCSCBTTBCGGGGEEEEEECCBCCCCCSSSCCSHHHH
T ss_pred             ceEEEecCceEEEEEeccCC-------cceEecCcccccccCCcchhcccccccCceeEEEEecCCCccccccccccccc
Confidence            46899999999999994111       235888874221  10         1122566666555655321 01      


Q ss_pred             ---CCCCeEEEEeCCCCCCCCCccccccCC
Q psy2626         204 ---KLNDIALFRLREDAPLSDLIQPICLPY  230 (355)
Q Consensus       204 ---~~~DIALl~L~~~v~~~~~v~picLp~  230 (355)
                         +..|..+=||.+-|+   -|.||-+..
T Consensus       133 ~~~~~~Dyh~PRL~K~VT---EvaP~~~t~  159 (989)
T 3h09_A          133 TQKRREDYYMPRLDKFVT---EVAPIEAST  159 (989)
T ss_dssp             HHHHHTCCBCCEESSCCC---SSCCCCBCC
T ss_pred             cccccccccCccccccee---eeccccccc
Confidence               125999999998775   567776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	355
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	3e-56
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	1e-53
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	2e-52
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	2e-51
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	3e-51
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	1e-50
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	2e-50
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	1e-49
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	2e-49
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	2e-49
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	3e-49
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	3e-48
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	4e-47
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	5e-47
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	6e-47
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	9e-47
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	1e-46
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	2e-44
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	2e-44
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	3e-44
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	6e-44
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	7e-44
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	1e-43
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	2e-43
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	2e-43
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	3e-43
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	7e-43
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	2e-42
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	2e-42
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	2e-42
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	9e-42
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	1e-40
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	5e-40
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	6e-40
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	1e-39
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	2e-39
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	1e-38
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	1e-38
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	2e-38
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	3e-38
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	1e-37
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	2e-37
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	7e-37
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	7e-37
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	1e-36
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	2e-36
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	1e-35
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	1e-35
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	1e-35
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	3e-35
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	8e-35
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	3e-34
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	3e-34
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	4e-31
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	5e-31
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	2e-29
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	2e-26
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	2e-26
d1hpga_	187	b.47.1.1 (A:) Glutamic acid-specific protease {Str	2e-15
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	4e-13
d1agja_	242	b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A	5e-08
d1qtfa_	246	b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus	5e-07

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score =  181 bits (460), Expect = 3e-56
 Identities = 78/248 (31%), Positives = 117/248 (47%), Gaps = 13/248 (5%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT +  G++P+  +      +    G     CG ++  + Y +TA HCV  D     
Sbjct: 1   IVGGTDATLGEFPYQLSF-----QETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENP 55

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               +  G +D+  +  S   I + + I+HE +      NDI+L +L      +D + PI
Sbjct: 56  SGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPI 115

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
                              V GWG+T   G     L+ V + +V +  CR  +      I
Sbjct: 116 A-----LPEQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADY--GADEI 168

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            ++++CAGV  GGKDSC GDSGGPL        Y+ G+VS+G  CA  G+PGVYT V+ +
Sbjct: 169 LDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYH 228

Query: 347 IQWIADNI 354
           + WI  N 
Sbjct: 229 VDWIKANA 236

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  175 bits (443), Expect = 1e-53
 Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 12/247 (4%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT S RG+WPW   +         +     +CGG++I  +++LTAAHC     + + 
Sbjct: 1   IVGGTASVRGEWPWQVTL------HTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKI 54

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
                 + +   E         ++  IIH+QY  A    DIAL +L      +D  +PIC
Sbjct: 55  LRVYSGILNQS-EIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPIC 113

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP   +           +V GWG    R  +   L+  +I +V N +C++     G  I 
Sbjct: 114 LPSKGD---RNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK--RYRGHKIT 168

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
             ++CAG   GGKD+C GDSGGPL    +  ++++G+ S+G+ CA+   PGVYT V  Y+
Sbjct: 169 HKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYV 228

Query: 348 QWIADNI 354
            WI +  
Sbjct: 229 DWILEKT 235

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  171 bits (433), Expect = 2e-52
 Identities = 79/248 (31%), Positives = 127/248 (51%), Gaps = 15/248 (6%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG+ S  G WPW+ A+ F  +          +CG +L+++ ++++AAHCV        
Sbjct: 1   IVGGSDSREGAWPWVVALYFDDQ---------QVCGASLVSRDWLVSAAHCVYGRNMEPS 51

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSDLIQPI 226
           +   V    +    TS  +   +   I+   + + R+  NDIA+  L      +D IQPI
Sbjct: 52  KWKAVLGLHMASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPI 111

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP +          +   +AGWG+ +++G  +  L+   + ++ N KC+         I
Sbjct: 112 CLPEENQ---VFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQ--QQMPEYNI 166

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            EN++CAG  +GG DSC GDSGGPLM   + ++ + GV S+G +CA    PGVY RV  +
Sbjct: 167 TENMVCAGYEAGGVDSCQGDSGGPLMCQENNRWLLAGVTSFGYQCALPNRPGVYARVPRF 226

Query: 347 IQWIADNI 354
            +WI   +
Sbjct: 227 TEWIQSFL 234

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  169 bits (428), Expect = 2e-51
 Identities = 78/253 (30%), Positives = 120/253 (47%), Gaps = 20/253 (7%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT ++ G+WPW  ++    +          +CG +LI+  ++++AAHC   D    Y
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQG--------HICGASLISPNWLVSAAHCYIDDRGFRY 52

Query: 168 EPY-----IVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
                    + +               ++R I H  +       DIAL  L + A  S +
Sbjct: 53  SDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSM 112

Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY 282
           ++PICLP  ++        K  +V GWG T + G  +  L+  +I V++   C  +    
Sbjct: 113 VRPICLPDASH---VFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENL---L 166

Query: 283 GATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGKKCAEVGFPGVYT 341
              I   ++C G LSGG DSC GDSGGPL     D + +  GVVS+G  CA+   PGVYT
Sbjct: 167 PQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYT 226

Query: 342 RVTNYIQWIADNI 354
           R+  +  WI +N 
Sbjct: 227 RLPLFRDWIKENT 239

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score =  168 bits (425), Expect = 3e-51
 Identities = 77/248 (31%), Positives = 112/248 (45%), Gaps = 28/248 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   +    P   ++                CGG+L+ + +V++AAHC         
Sbjct: 1   IVGGYECKAYSQPHQVSLN----------SGYHFCGGSLVNENWVVSAAHCYKSRVEVRL 50

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
             + + V         S   I   R I H  Y+S    NDI L +L + A L+  +QP+ 
Sbjct: 51  GEHNIKV------TEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVA 104

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP      S         V+GWG+T+     S KL+ + I ++    C     +Y   I 
Sbjct: 105 LP-----TSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNN---SYPGMIT 156

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
             + CAG L GGKDSC GDSGGP++        + GVVS+G  CAE G PGVY +V  + 
Sbjct: 157 NAMFCAGYLEGGKDSCQGDSGGPVVC----NGELQGVVSWGYGCAEPGNPGVYAKVCIFN 212

Query: 348 QWIADNIS 355
            W+   ++
Sbjct: 213 DWLTSTMA 220

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (420), Expect = 2e-50
 Identities = 75/249 (30%), Positives = 129/249 (51%), Gaps = 19/249 (7%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  ++ GQ+PW   +         NGK +  CGG+++ +++++TAAHCV        
Sbjct: 1   VVGGEDAKPGQFPWQVVL---------NGKVDAFCGGSIVNEKWIVTAAHCVE----TGV 47

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLND--IALFRLREDAPLSDLIQP 225
           +  +V       E   +     + R I H  Y +A    +  IAL  L E   L+  + P
Sbjct: 48  KITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTP 107

Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
           IC   D    +   +  + +V+GWG    +G  +  L+++++ +VD   C +   +   T
Sbjct: 108 IC-IADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLR---STKFT 163

Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
           I  N+ CAG   GG+DSC GDSGGP +  ++   ++ G++S+G++CA  G  G+YT+V+ 
Sbjct: 164 IYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSR 223

Query: 346 YIQWIADNI 354
           Y+ WI +  
Sbjct: 224 YVNWIKEKT 232

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  164 bits (416), Expect = 1e-49
 Identities = 77/254 (30%), Positives = 121/254 (47%), Gaps = 18/254 (7%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  + R +WPW  ++      R         CGG+LI  ++VLTAAHCV PD     
Sbjct: 1   IVGGQEAPRSKWPWQVSL------RVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDV---K 51

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
           +   + V   +         + + R I+H Q+ +A+   DIAL  L E   +S  +  + 
Sbjct: 52  DLAALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVT 111

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIF------SN 281
           LP  +               G      R P    L+ V++ +++N  C   +       +
Sbjct: 112 LPPASETFPPGMPCWVTGW-GDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGD 170

Query: 282 YGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYT 341
               + +++LCAG  +  +DSC GDSGGPL+  ++  +   GVVS+G+ CA+   PG+YT
Sbjct: 171 DVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYT 228

Query: 342 RVTNYIQWIADNIS 355
           RVT Y+ WI   + 
Sbjct: 229 RVTYYLDWIHHYVP 242

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  164 bits (415), Expect = 2e-49
 Identities = 76/257 (29%), Positives = 119/257 (46%), Gaps = 25/257 (9%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +  G+WPW  ++ +             +CGG+L++  +VLTAAHC         
Sbjct: 1   IVGGRDTSLGRWPWQVSLRYD---------GAHLCGGSLLSGDWVLTAAHCFPERNRVLS 51

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQ------YTSARKLNDIALFRLREDAPLSD 221
              +        + +  G+ + ++  + H          S    NDIAL  L    PL++
Sbjct: 52  RWRVFAG--AVAQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTE 109

Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN 281
            IQP+CLP        L + K   V GWG+T + G  +  L+  ++ ++ N  C      
Sbjct: 110 YIQPVCLPAAGQ---ALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFY 166

Query: 282 YGATINENILCAGVLSGGKDSCGGDSGGPLMYP----LDTKYYIIGVVSYGKKCAEVGFP 337
               I   + CAG   GG D+C GDSGGP +         ++ + G+VS+G  CA    P
Sbjct: 167 GN-QIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKP 225

Query: 338 GVYTRVTNYIQWIADNI 354
           GVYT+V+++ +WI   I
Sbjct: 226 GVYTKVSDFREWIFQAI 242

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  164 bits (414), Expect = 2e-49
 Identities = 89/262 (33%), Positives = 130/262 (49%), Gaps = 17/262 (6%)

Query: 97  CGVNAF--NSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
           CG   F  N S R+VGG  +    WPW  ++     +   +      CGG LIT  +VLT
Sbjct: 1   CGAPIFQPNLSARVVGGEDAIPHSWPWQISL-----QYLRDNTWRHTCGGTLITPNHVLT 55

Query: 155 AAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLR 214
           AAHC+S   T       +   ++++ED +  + + ++   +HE++ S    NDIAL +L 
Sbjct: 56  AAHCISNTLT---YRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLA 112

Query: 215 EDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPK 274
           E   L D IQ  CLP + +L  +       FV GWG     GP++ +L+     VVD   
Sbjct: 113 ETVELGDTIQVACLPSEGSLLPQ---DYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYAT 169

Query: 275 CRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--KCA 332
           C Q       T+ E ++CAG   G   +C GDSGGPL    D ++ + G+VS+G    C 
Sbjct: 170 CSQRDWWGT-TVKETMVCAGG-DGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCN 227

Query: 333 EVGFPGVYTRVTNYIQWIADNI 354
               P V+TRV+ YI WI   +
Sbjct: 228 TFKKPTVFTRVSAYIDWINQKL 249

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  162 bits (411), Expect = 3e-49
 Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 29/249 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   +    P+  ++                CGG+LI  ++V++AAHC         
Sbjct: 1   IVGGYTCQENSVPYQVSLNSG----------YHFCGGSLINDQWVVSAAHCYKSRIQVRL 50

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
             + ++V         +   +   + I H  +      NDI L +L     L+  +  + 
Sbjct: 51  GEHNINV------LEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVA 104

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATI 286
           LP      S         ++GWG+T+  G   P  L+ +   ++    C    S     I
Sbjct: 105 LP-----SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASSSFI---I 156

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +N++C G L GGKD+C GDSGGP++        + G+VS+G  CA    PGVYT+V NY
Sbjct: 157 TDNMVCVGFLEGGKDACQGDSGGPVVC----NGELQGIVSWGYGCALPDNPGVYTKVCNY 212

Query: 347 IQWIADNIS 355
           + WI D I+
Sbjct: 213 VDWIQDTIA 221

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (399), Expect = 4e-47
 Identities = 78/262 (29%), Positives = 111/262 (42%), Gaps = 23/262 (8%)

Query: 96  ECGVNAFNSSK---RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYV 152
           +CG       K    +VGG  +    WPW  ++  +             CGG LI+  +V
Sbjct: 3   DCGKPQVEPKKCPGAVVGGCVAYPHSWPWQVSLRTRFGM--------HFCGGTLISPEWV 54

Query: 153 LTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFR 212
           LTAAHC+              +G+    +    V       I   +        DIAL +
Sbjct: 55  LTAAHCLEKSPRPSSYKV--ILGAHQEVNLEPHVQE-----IEVSRLFLEPTRKDIALLK 107

Query: 213 LREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDN 272
           L   A ++D + P CLP        + +R   F+ GWG T             Q+ V++N
Sbjct: 108 LSSPAVITDKVIPACLPSPNY---VVADRTECFITGWGETQGTFGAGLL-MEAQLPVIEN 163

Query: 273 PKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA 332
             C +        +    LCAG L+GG DSC GDSGGPL+     KY + GV S+G  CA
Sbjct: 164 KVCNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCA 222

Query: 333 EVGFPGVYTRVTNYIQWIADNI 354
               PGVY RV+ ++ WI   +
Sbjct: 223 RPNKPGVYVRVSRFVTWIEGVM 244

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  157 bits (397), Expect = 5e-47
 Identities = 76/247 (30%), Positives = 124/247 (50%), Gaps = 15/247 (6%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+        
Sbjct: 1   IVGGQECKDGECPWQALLI--------NEENEGFCGGTILSEFYILTAAHCL----YQAK 48

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              +        ++       E+E  I H ++T      DIA+ RL+        + P C
Sbjct: 49  RFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPAC 108

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP      S L  +KT  V+G+G T  +G  S +L+ +++  VD   C+    +    I 
Sbjct: 109 LPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL---SSSFIIT 165

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
           +N+ CAG  +  +D+C GDSGGP +      Y++ G+VS+G+ CA  G  G+YT+VT ++
Sbjct: 166 QNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFL 225

Query: 348 QWIADNI 354
           +WI  ++
Sbjct: 226 KWIDRSM 232

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score =  156 bits (395), Expect = 9e-47
 Identities = 79/249 (31%), Positives = 117/249 (46%), Gaps = 25/249 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   + G+ PW A +         N + E  CGG ++++ Y+LTAAHC+      + 
Sbjct: 1   IVGGYNCKDGEVPWQALLI--------NEENEGFCGGTILSEFYILTAAHCLYQAKRFKV 52

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
                +      ++       E+E  I H ++T      DIA+ RL+        + P  
Sbjct: 53  RVGDRNT----EQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPAS 108

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATI 286
           LP                ++GWG+T   G   P  L+ +   V+   KC     +Y   I
Sbjct: 109 LPTAPPATGTKC-----LISGWGNTASSGADYPDELQCLDAPVLSQAKCEA---SYPGKI 160

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
             N+ C G L GGKDSC GDSGGP++        + GVVS+G  CA+   PGVYT+V NY
Sbjct: 161 TSNMFCVGFLEGGKDSCQGDSGGPVVC----NGQLQGVVSWGDGCAQKNKPGVYTKVYNY 216

Query: 347 IQWIADNIS 355
           ++WI + I+
Sbjct: 217 VKWIKNTIA 225

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  150 bits (379), Expect = 2e-44
 Identities = 65/249 (26%), Positives = 99/249 (39%), Gaps = 27/249 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+ G        PW AA+    R          +CGG L+  R+VLTAAHC         
Sbjct: 1   ILEGRECIPHSQPWQAALFQGER---------LICGGVLVGDRWVLTAAHCKKQKY---S 48

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
                H      +        +  +   +         +DI L RL+  A L D ++P+ 
Sbjct: 49  VRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQ 108

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVF-RGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           L             +   ++GWG+    +      L   ++ +    KC +    Y   I
Sbjct: 109 LANLCP-----KVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCER---AYPGKI 160

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTN 345
            E ++CAG  S G D+C GDSGGPL+        + G+ S+G   C +   PGVYT++  
Sbjct: 161 TEGMVCAGS-SNGADTCQGDSGGPLVC----DGMLQGITSWGSDPCGKPEKPGVYTKICR 215

Query: 346 YIQWIADNI 354
           Y  WI   +
Sbjct: 216 YTTWIKKTM 224

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (378), Expect = 3e-44
 Identities = 78/251 (31%), Positives = 123/251 (49%), Gaps = 17/251 (6%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           ++ G  + RG  PW   +         + K +  CG  LI   +VLTAAHC+      E 
Sbjct: 1   LIDGKMTRRGDSPWQVVLL--------DSKKKLACGAVLIHPSWVLTAAHCMD-----ES 47

Query: 168 EPYIVHVGSIDLEDT-SSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
           +  +V +G  DL       + ++I+   +H  Y+ +   NDIAL  L + A LS  I PI
Sbjct: 48  KKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPI 107

Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQI--FSNYG 283
           CLP       EL +      V GWG    R   + + R   ++ +  P            
Sbjct: 108 CLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMS 167

Query: 284 ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV 343
             ++EN+LCAG+L   +D+C GDSGGP++      ++++G+VS+G+ C  +   GVYT+V
Sbjct: 168 NMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKV 227

Query: 344 TNYIQWIADNI 354
           + Y+ WI  +I
Sbjct: 228 SRYLDWIHGHI 238

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (376), Expect = 6e-44
 Identities = 83/249 (33%), Positives = 111/249 (44%), Gaps = 31/249 (12%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +V G P ++   P+ AA+         +G    +CGG LI   +VLTAAHC         
Sbjct: 1   LVHGGPCDKTSHPYQAAL-------YTSGH--LLCGGVLIHPLWVLTAAHCK-------K 44

Query: 168 EPYIVHVGSIDLEDTSSGVSI-EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G  +L    S      + R +IH  Y +A    DI L RL   A LS+LIQP+
Sbjct: 45  PNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL 104

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            L  D           +  + GWG T         ++   I +V   +C      Y   I
Sbjct: 105 PLERD-----CSANTTSCHILGWGKTADGD-FPDTIQCAYIHLVSREECEH---AYPGQI 155

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTN 345
            +N+LCAG    GKDSC GDSGGPL+       ++ G+VS+G   C     PGVYT V  
Sbjct: 156 TQNMLCAGDEKYGKDSCQGDSGGPLVC----GDHLRGLVSWGNIPCGSKEKPGVYTNVCR 211

Query: 346 YIQWIADNI 354
           Y  WI   I
Sbjct: 212 YTNWIQKTI 220

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  149 bits (376), Expect = 7e-44
 Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 28/254 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG   E+   PW  A+ ++          E +CGG L+ + +VLTAAHC         
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQ---------KEHICGGVLLDRNWVLTAAHCYVDQYEVWL 51

Query: 168 EPY-----IVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
                           +  +       +   ++      A   +D+ L RL + A ++D+
Sbjct: 52  GKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDV 111

Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSN 281
           ++PI LP       E         +GWGS        P  L+ V I+++ N  C ++   
Sbjct: 112 VKPIALP-----TKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKV--- 163

Query: 282 YGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVY 340
           Y   + + +LCAG + GGKD+C  DSGGPL+        + G  SYG   C + G P +Y
Sbjct: 164 YLQKVTDVMLCAGEMGGGKDTCRDDSGGPLIC----DGILQGTTSYGPVPCGKPGVPAIY 219

Query: 341 TRVTNYIQWIADNI 354
           T +  +  WI D +
Sbjct: 220 TNLIKFNSWIKDTM 233

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  148 bits (373), Expect = 2e-43
 Identities = 72/250 (28%), Positives = 116/250 (46%), Gaps = 14/250 (5%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT ++R  WP   ++     + R+       CGG LI + +V+TAAHCV  + T   
Sbjct: 1   VVGGTEAQRNSWPSQISL-----QYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRV 55

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
                ++   +  +    V ++      +          DIAL RL +   L+  +Q   
Sbjct: 56  VVGEHNLNQNNGTEQY--VGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGV 113

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP      + L      ++ GWG T   G L+  L+   +  VD   C      +G+T+ 
Sbjct: 114 LPRAG---TILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSS-YWGSTVK 169

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYTRVTN 345
            +++CAG   G +  C GDSGGPL   ++ +Y + GV S+  +  C     P V+TRV+ 
Sbjct: 170 NSMVCAGG-DGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSA 228

Query: 346 YIQWIADNIS 355
           YI WI + I+
Sbjct: 229 YISWINNVIA 238

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (376), Expect = 2e-43
 Identities = 60/301 (19%), Positives = 103/301 (34%), Gaps = 63/301 (20%)

Query: 97  CGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAA 156
           CG+      ++      ++  + PW A I           K    C GA++++ +VLTAA
Sbjct: 1   CGM--VWEHRK-----GTDYHKQPWQAKI-----SVIRPSKGHESCMGAVVSEYFVLTAA 48

Query: 157 HCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL---------ND 207
           HC + D         V VG            +EIE  + H  Y    K           D
Sbjct: 49  HCFTVDDK--EHSIKVSVGG-------EKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYD 99

Query: 208 IALFRLREDAPLSDLIQPICLPYDTNLRSELFE---------RKTPFVAGWGSTVFRGPL 258
           +AL +L+        I+PICLP        L           ++    A     +F    
Sbjct: 100 VALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEE 159

Query: 259 SPKLRHVQISVVDNPKCRQIFSNY------------GATINENILCAGVLSG--GKDSCG 304
             KL   ++ + +  K      +                +    LC G +S     ++C 
Sbjct: 160 EKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCR 219

Query: 305 GDSGGPLMYPLDTKYYIIGVVSYGKKCA----------EVGFPGVYTRVTNYIQWIADNI 354
           GDSGGPL+    +++  +GV+S+G                     +  +   + W+ + +
Sbjct: 220 GDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKL 279

Query: 355 S 355
            
Sbjct: 280 Q 280

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (372), Expect = 3e-43
 Identities = 71/251 (28%), Positives = 112/251 (44%), Gaps = 25/251 (9%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG        P+M  +             + +C GALI K +VLTAAHC         
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLD---------RKTICAGALIAKDWVLTAAHCNLN-----K 46

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              ++        +  +   + +++   +  Y  A +  D+ L +L E A ++  +  + 
Sbjct: 47  RSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILH 106

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFS-NYGATI 286
           LP   +   ++       VAGWG T      S  LR V+I+++D   C      N+   I
Sbjct: 107 LPKKGD---DVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVI 163

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG--KKCAEVGFPGVYTRVT 344
             N++CAG L GG+DSC GDSG PL+     +    GV S+G   KC +   PGVY  ++
Sbjct: 164 GMNMVCAGSLRGGRDSCNGDSGSPLLC----EGVFRGVTSFGLENKCGDPRGPGVYILLS 219

Query: 345 -NYIQWIADNI 354
             ++ WI   I
Sbjct: 220 KKHLNWIIMTI 230

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score =  146 bits (368), Expect = 7e-43
 Identities = 75/244 (30%), Positives = 106/244 (43%), Gaps = 25/244 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGGT +  G +P++ +I                CGG+L+    VLTAAHCVS      +
Sbjct: 1   IVGGTSASAGDFPFIVSISRN---------GGPWCGGSLLNANTVLTAAHCVSGYAQSGF 51

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
           +     +       TSS  S+ +                D+A+ +L    P    I    
Sbjct: 52  QIRAGSLSRTSGGITSSLSSVRVHPSYSGNNN-------DLAILKLSTSIPSGGNIGYAR 104

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSP-KLRHVQISVVDNPKCRQIFSNYGATI 286
           L    +   +     +  VAGWG+T   G  +P  L  V + +V    CR  +      I
Sbjct: 105 LAASGS---DPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS--AI 159

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
              + CAGV SGGKDSC GDSGGP++   D+   +IG VS+G  CA   + GVY  V   
Sbjct: 160 TNQMFCAGVSSGGKDSCQGDSGGPIV---DSSNTLIGAVSWGNGCARPNYSGVYASVGAL 216

Query: 347 IQWI 350
             +I
Sbjct: 217 RSFI 220

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score =  145 bits (366), Expect = 2e-42
 Identities = 69/254 (27%), Positives = 106/254 (41%), Gaps = 30/254 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG   E+   PW  A+  +           ++CGG LI   +V+TAAHC S +     
Sbjct: 1   IVGGYKCEKNSQPWQVAVINE-----------YLCGGVLIDPSWVITAAHCYSNNYQVLL 49

Query: 168 EPYIVHVGS-----IDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
               +           +  +               +       ND+ L  L E A ++  
Sbjct: 50  GRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGG 109

Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVF-RGPLSPKLRHVQISVVDNPKCRQIFSN 281
           ++ I LP       E     T   +GWGST      +S  L+ V I ++ N KC +    
Sbjct: 110 VKVIDLPTK-----EPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIET--- 161

Query: 282 YGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVY 340
           Y   + + +LCAG + GGKD+C GDSGGPL+        + G+ S G   CA+   P +Y
Sbjct: 162 YKDNVTDVMLCAGEMEGGKDTCAGDSGGPLIC----DGVLQGITSGGATPCAKPKTPAIY 217

Query: 341 TRVTNYIQWIADNI 354
            ++  +  WI   +
Sbjct: 218 AKLIKFTSWIKKVM 231

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (367), Expect = 2e-42
 Identities = 81/250 (32%), Positives = 115/250 (46%), Gaps = 14/250 (5%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG    +G+ PW   +               +CGG LI   +V++AAHC   D    +
Sbjct: 1   IVGGKVCPKGECPWQVLLLVNGA---------QLCGGTLINTIWVVSAAHCF--DKIKNW 49

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLND-IALFRLREDAPLSDLIQPI 226
              I  +G  DL +            +I          N  IAL RL +   L+D + P+
Sbjct: 50  RNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPL 109

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           CLP  T     L   +   V+GWG  + RG  + +L  + +  +    C Q     G + 
Sbjct: 110 CLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSP 169

Query: 287 N--ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
           N  E + CAG   G KDSC GDSGGP        +Y+ G+VS+G+ CA VG  GVYTRV+
Sbjct: 170 NITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVS 229

Query: 345 NYIQWIADNI 354
            YI+W+   +
Sbjct: 230 QYIEWLQKLM 239

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (366), Expect = 2e-42
 Identities = 74/250 (29%), Positives = 114/250 (45%), Gaps = 19/250 (7%)

Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE 166
            I+GG        P+MA+I +             +CGG LI  ++VLTAAHC    T G+
Sbjct: 2   EIIGGKEVSPHSRPFMASIQYG---------GHHVCGGVLIDPQWVLTAAHCQYRFTKGQ 52

Query: 167 YEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               ++   S+   + S    +EI++ I   + TS  + NDI L +L+  A L+  ++ +
Sbjct: 53  SPTVVLGAHSLSKNEASKQT-LEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKML 111

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            +   T+LR      K        +       S  LR V ++V+    C       G   
Sbjct: 112 HIRSKTSLR---SGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPF 168

Query: 287 N-ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT- 344
             ++++CAG   G KDSC GD+GGPL+     K     +VS G +C     PG+YT +T 
Sbjct: 169 ITKDMVCAGDAKGQKDSCKGDAGGPLIC----KGVFHAIVSGGHECGVATKPGIYTLLTK 224

Query: 345 NYIQWIADNI 354
            Y  WI  N+
Sbjct: 225 KYQTWIKSNL 234

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  143 bits (361), Expect = 9e-42
 Identities = 72/247 (29%), Positives = 109/247 (44%), Gaps = 22/247 (8%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  ++    P+MA +     +          CGG LI + +VLTAAHC         
Sbjct: 1   IIGGHEAKPHSRPYMAYL-----QIMDEYSGSKKCGGFLIREDFVLTAAHCSGSKIQVTL 55

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
             + +       E       I + + I H  Y S    NDI L +L+  A  S  ++P+ 
Sbjct: 56  GAHNIK------EQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLN 109

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP       ++      +VAGWG     G  S  L+ V+++V ++ KC     NY    N
Sbjct: 110 LPRRN---VKVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKAN 166

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
           E  +CAG     + S  GDSGGPL+     K    G+VSYG+       P  +T+V+ ++
Sbjct: 167 E--ICAGDPKIKRASFRGDSGGPLVC----KKVAAGIVSYGQNDG--STPRAFTKVSTFL 218

Query: 348 QWIADNI 354
            WI   +
Sbjct: 219 SWIKKTM 225

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  141 bits (354), Expect = 1e-40
 Identities = 77/251 (30%), Positives = 106/251 (42%), Gaps = 15/251 (5%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  +    WPW  ++     +  ++G+    CGG L+ + +VLTAAHC+S   T  Y
Sbjct: 1   VVGGEDARPNSWPWQVSL-----QYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRT--Y 53

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              +        E  S  V +                 NDIAL +L     L+D IQ  C
Sbjct: 54  RVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGC 113

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP        L      +V GWG     G     L+  Q+ VVD   C +          
Sbjct: 114 LPAAGT---ILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKT 170

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGKK--CAEVGFPGVYTRVT 344
             I   G   G   SC GDSGGPL     + ++ + G+VS+G    C     P V+TRV+
Sbjct: 171 NMICAGG--DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVS 228

Query: 345 NYIQWIADNIS 355
           NYI WI   I+
Sbjct: 229 NYIDWINSVIA 239

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (349), Expect = 5e-40
 Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 22/249 (8%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  +E    P+MA++               +CGG L+ +++VL+AAHC+     G+ 
Sbjct: 1   ILGGREAEAHARPYMASVQLN---------GAHLCGGVLVAEQWVLSAAHCLEDAADGKV 51

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
           +  +        +   S    ++ R + H         +D+ L +L E A L   ++P+ 
Sbjct: 52  QVLLGAH--SLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLP 109

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
                 +  ++       VAGWG     G     L+HV + V+D   C +          
Sbjct: 110 WQ---RVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNR---RTHHDGA 163

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNY 346
                    S  +DSC GDSGGPL+        + GVV+ G + C     PG+YTRV +Y
Sbjct: 164 ITERLMCAESNRRDSCKGDSGGPLVC----GGVLEGVVTSGSRVCGNRKKPGIYTRVASY 219

Query: 347 IQWIADNIS 355
             WI   ++
Sbjct: 220 AAWIDSVLA 228

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score =  138 bits (348), Expect = 6e-40
 Identities = 76/249 (30%), Positives = 120/249 (48%), Gaps = 26/249 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  S     P+MA +     +         +CGG LI++++VLTAAHC   + T   
Sbjct: 1   IIGGVESIPHSRPYMAHLDIVTEK-----GLRVICGGFLISRQFVLTAAHCKGREIT--- 52

Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G+ D+ +  S+   I++E+ IIHE Y S   L+DI L +L +   L+  +  +
Sbjct: 53  ----VILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVV 108

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP  ++    +      + AGWG T  R P S  LR V++ ++D   C           
Sbjct: 109 PLPSPSD---FIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYY----E 161

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
            +  +C G  +  + +  GDSGGPL+          G+VSYG   A    P ++TRV+ Y
Sbjct: 162 YKFQVCVGSPTTLRAAFMGDSGGPLLC----AGVAHGIVSYGHPDA--KPPAIFTRVSTY 215

Query: 347 IQWIADNIS 355
           + WI   I+
Sbjct: 216 VPWINAVIN 224

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  138 bits (347), Expect = 1e-39
 Identities = 64/249 (25%), Positives = 97/249 (38%), Gaps = 29/249 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG        P+  ++                CGG+LI  ++V++AAHC         
Sbjct: 1   IVGGYTCGANTVPYQVSLNSG----------YHFCGGSLINSQWVVSAAHCY-------K 43

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIH-EQYTSARKLNDIALFRLREDAPLSDLIQPI 226
               V +G  ++               I    Y S    NDI L +L+  A L+  +  I
Sbjct: 44  SGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASI 103

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
            LP            +        +          L+ ++  ++ +  C+     Y   I
Sbjct: 104 SLPTSCAS----AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA---YPGQI 156

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
             N+ CA  L G  DSC GDSGGP++        + G+VS+G  C     PGVYT+V NY
Sbjct: 157 TSNMFCAYGLEGKGDSCQGDSGGPVVC----SGKLQGIVSWGSGCQAKNKPGVYTKVCNY 212

Query: 347 IQWIADNIS 355
           + WI   I+
Sbjct: 213 VSWIKQTIA 221

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  137 bits (344), Expect = 2e-39
 Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 26/243 (10%)

Query: 119 WPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTT-----GEYEPYIVH 173
            PW  A+           K  + CGG L+ + +VLTAAHC +           +      
Sbjct: 3   QPWHVAV-------YRFNK--YQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPS 53

Query: 174 VGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTN 233
                +          +     H         ND+ L RL + A ++D+++PI LP    
Sbjct: 54  DQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPT--- 110

Query: 234 LRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCA 293
                            +T  +      L+ V + ++ N  C +    +   + + +LCA
Sbjct: 111 -EEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDK---AHEMKVTDAMLCA 166

Query: 294 GVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNYIQWIAD 352
           G + GG  +C  DSGGPL+        + G+ S+G + C E   P VYT++  +  WI +
Sbjct: 167 GEMDGGSYTCEHDSGGPLIC----DGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRE 222

Query: 353 NIS 355
            ++
Sbjct: 223 TMA 225

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score =  135 bits (340), Expect = 1e-38
 Identities = 63/249 (25%), Positives = 96/249 (38%), Gaps = 25/249 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           ++GG   +  +  ++ A               + CGG LI   +V+TAAHC S D     
Sbjct: 1   VIGGNECDINEHRFLVAFFNTTG---------FFCGGTLINPEWVVTAAHCDSTDF---- 47

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
               + V S  + +         E+ I   +  +     DI L +L +    S  I P+ 
Sbjct: 48  -QMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLS 106

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP                +     T  +           I+++D+  C+  +    A   
Sbjct: 107 LPSSP----PSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYR 162

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVTNY 346
                     GGKD+CGGDSGGPL+          G+VSYG   C +   PG+YT V +Y
Sbjct: 163 TLCAGIVQ--GGKDTCGGDSGGPLIC----NGQFQGIVSYGAHPCGQGPKPGIYTNVFDY 216

Query: 347 IQWIADNIS 355
             WI  NI+
Sbjct: 217 TDWIQRNIA 225

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  135 bits (340), Expect = 1e-38
 Identities = 72/242 (29%), Positives = 109/242 (45%), Gaps = 18/242 (7%)

Query: 119 WPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSID 178
           W W  ++     +   +G     CGG+LI   +V+TA HC+S   T  Y+  +       
Sbjct: 2   WSWQVSL-----QYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRT--YQVVLGEYDRSV 54

Query: 179 LEDTSSGVSIEIERPIIHEQYTSARKLND--IALFRLREDAPLSDLIQPICLPYDTNLRS 236
           LE +   + I      +H  + S        IAL +L   A L D +Q   LP   +   
Sbjct: 55  LEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGD--- 111

Query: 237 ELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVL 296
            L      +++GWG     GPL  KL+   +  VD   C Q    +G T+ + ++CAG  
Sbjct: 112 ILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWD-WWGITVKKTMVCAGG- 169

Query: 297 SGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSY--GKKCAEVGFPGVYTRVTNYIQWIADN 353
              +  C GDSGGPL  P  D  + + GV S+     C  +  P V+TRV+ +I WI + 
Sbjct: 170 -DTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDET 228

Query: 354 IS 355
           I+
Sbjct: 229 IA 230

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score =  134 bits (338), Expect = 2e-38
 Identities = 68/248 (27%), Positives = 103/248 (41%), Gaps = 21/248 (8%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGG  ++   WPW  ++     + ++       CGG+LI + +V+TAAHCV        
Sbjct: 1   VVGGRVAQPNSWPWQISL-----QYKSGSSYYHTCGGSLIRQGWVMTAAHCVDS-----A 50

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL---NDIALFRLREDAPLSDLIQ 224
             + V +G  +L        I     +      ++  +    DIAL RL   A L+  +Q
Sbjct: 51  RTWRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQ 110

Query: 225 PICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
              LP    +          ++ GWG T   GPLS  L+   +  VD+  C         
Sbjct: 111 LAALPPSNQIL---PNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGST 167

Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSY--GKKCAEVGFPGVYTR 342
                +   G        C GDSGGPL   ++  YY+ GV S+     C     P V+TR
Sbjct: 168 VKTTMVCAGGG---ANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTR 224

Query: 343 VTNYIQWI 350
           V+ YI W+
Sbjct: 225 VSAYISWM 232

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score =  134 bits (338), Expect = 3e-38
 Identities = 68/251 (27%), Positives = 104/251 (41%), Gaps = 16/251 (6%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           ++GGT +  G++PW  +       +R +G     CG +L++    L+A+HCV        
Sbjct: 1   VIGGTNASPGEFPWQLSQ------QRQSGSWSHSCGASLLSSTSALSASHCVDGVL---P 51

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
               V  G     DTS   +  ++   +HE Y +        +  L     +S       
Sbjct: 52  NNIRVIAGLWQQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQA 111

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG-ATI 286
                N  +  +   T  ++GWG T     L   L+   I V+   +C       G A I
Sbjct: 112 AVLPAN-NNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANI 170

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVS----YGKKCAEVGFPGVYTR 342
            +N +C    +G   +C GDSGGPL  P D    ++GV S     G       +P VYTR
Sbjct: 171 WDNHICVQDPAGNTGACNGDSGGPLNCP-DGGTRVVGVTSWVVSSGLGACLPDYPSVYTR 229

Query: 343 VTNYIQWIADN 353
           V+ Y+ WI DN
Sbjct: 230 VSAYLGWIGDN 240

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score =  132 bits (332), Expect = 1e-37
 Identities = 72/249 (28%), Positives = 104/249 (41%), Gaps = 29/249 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +    WP  AA+              + CGG+LI+  ++LTAAHC+     G  
Sbjct: 1   IVGGVEAVPNSWPHQAALFIDDM---------YFCGGSLISPEWILTAAHCMD----GAG 47

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              +V       ED ++ V+I+     +HE Y S    NDIA+ RL     L+  I  + 
Sbjct: 48  FVDVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVG 107

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVF-RGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
           LP                  GWG        +S  LR V + ++ N  C  ++       
Sbjct: 108 LPSTDV-----GVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIV---- 158

Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA-EVGFPGVYTRVTN 345
             +       +GGK +C GDSGGPL Y         G+ S+G     E G+P  +TRVT 
Sbjct: 159 -TDGNICIDSTGGKGTCNGDSGGPLNY----NGLTYGITSFGAAAGCEAGYPDAFTRVTY 213

Query: 346 YIQWIADNI 354
           ++ WI    
Sbjct: 214 FLDWIQTQT 222

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  132 bits (333), Expect = 2e-37
 Identities = 63/254 (24%), Positives = 110/254 (43%), Gaps = 28/254 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTT--- 164
           I+GG   E+   PW  A+  +           + CGG L+  ++VLTAAHC+S D     
Sbjct: 1   IIGGWECEKHSKPWQVAVYHQGH---------FQCGGVLVHPQWVLTAAHCMSDDYQIWL 51

Query: 165 GEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQY--TSARKLNDIALFRLREDAPLSDL 222
           G +        +   + + S +  + +  ++ ++Y        +D+ L RL + A ++D 
Sbjct: 52  GRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDA 111

Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLS-PKLRHVQISVVDNPKCRQIFSN 281
           ++ + LP             T + +GWG            L+ V++ +  N KC +    
Sbjct: 112 VKILDLPTQEP-----KLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCAR---A 163

Query: 282 YGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVY 340
           Y   + E +LCA         C GDSGG L+          G+ S+G  +CA+     V+
Sbjct: 164 YPEKMTEFVLCATHRDDSGSICLGDSGGALIC----DGVFQGITSWGYSECADFNDNFVF 219

Query: 341 TRVTNYIQWIADNI 354
           T+V  + +WI + I
Sbjct: 220 TKVMPHKKWIKETI 233

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (328), Expect = 7e-37
 Identities = 73/247 (29%), Positives = 112/247 (45%), Gaps = 23/247 (9%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  ++    P+MA +         + K    CGG LI   +VLTAAHC         
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIW------DQKSLKRCGGFLIQDDFVLTAAHCWGSSINVTL 54

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
             + +       E   +   I ++RPI H  Y      NDI L +L   A  +  +QP+ 
Sbjct: 55  GAHNIK------EQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLR 108

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP +   ++++   +T  VAGWG T   G  S  L+ V+++V ++ KC     +Y  +  
Sbjct: 109 LPSN---KAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTI 165

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
           E   C G     K S  GDSGGPL+          G+VSYG+       P   T+V++++
Sbjct: 166 EL--CVGDPEIKKTSFKGDSGGPLVC----NKVAQGIVSYGRNNG--MPPRACTKVSSFV 217

Query: 348 QWIADNI 354
            WI   +
Sbjct: 218 HWIKKTM 224

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score =  130 bits (327), Expect = 7e-37
 Identities = 71/248 (28%), Positives = 106/248 (42%), Gaps = 29/248 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +VGGT + +G++P+M  +                CGGAL  +  VLTAAHCV    +G  
Sbjct: 1   VVGGTRAAQGEFPFMVRLSMG-------------CGGALYAQDIVLTAAHCV--SGSGNN 45

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
                  G +DL+ +S+      +         + +               L  L QPI 
Sbjct: 46  TSITATGGVVDLQSSSAVKVRSTKVLQAPGYNGTGKDWA------------LIKLAQPIN 93

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
            P      +  + + T  VAGWG+    G     L    +  V +  CR  + N     N
Sbjct: 94  QPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGN-ELVAN 152

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDT-KYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
           E I      +GG D+C GDSGGP+    +  ++  +G+VS+G  CA  G+PGVYT V+ +
Sbjct: 153 EEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTF 212

Query: 347 IQWIADNI 354
              IA   
Sbjct: 213 ASAIASAA 220

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  129 bits (325), Expect = 1e-36
 Identities = 76/247 (30%), Positives = 111/247 (44%), Gaps = 24/247 (9%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  ++    P+MA + FK   +        +CGG L+ + +VLTAAHC+        
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFKTSGKS------HICGGFLVREDFVLTAAHCL------GS 48

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              +       +E   +   I + RPI H  Y      NDI L +L   A ++D + PI 
Sbjct: 49  SINVTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPIN 108

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP       E+       VAGWG      P + KL+ V + V    KC      +   I 
Sbjct: 109 LPRSLA---EVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIA---RFKNYIP 162

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
              +CAG  S  K+S  GDSGGPL+          G+VSYG+       P VYTR+++++
Sbjct: 163 FTQICAGDPSKRKNSFSGDSGGPLVC----NGVAQGIVSYGRNDG--TTPDVYTRISSFL 216

Query: 348 QWIADNI 354
            WI   +
Sbjct: 217 SWIHSTM 223

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (326), Expect = 2e-36
 Identities = 64/256 (25%), Positives = 99/256 (38%), Gaps = 27/256 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPD----- 162
           I+GG  ++ G +PW                     GGAL+  R++LTAAH + P      
Sbjct: 1   IIGGQKAKMGNFPWQVFTNIH-----------GRGGGALLGDRWILTAAHTLYPKEHEAQ 49

Query: 163 TTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
           +    + ++ H    +L    +     +     + Q  S     DIAL  L     L   
Sbjct: 50  SNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPN 109

Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFS-- 280
           + PICLP +                     +        LR V++ V +   C       
Sbjct: 110 LLPICLPDNDTFYDLGLMGYVSGFGVMEEKIA-----HDLRFVRLPVANPQACENWLRGK 164

Query: 281 NYGATINENILCAGVLSGGKDSCGGDSGGPLMY--PLDTKYYIIGVVSYGKKCAEVGFPG 338
           N     ++N+ CAG  S  +D+C GDSGG      P   ++   G+VS+G  C+     G
Sbjct: 165 NRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YG 222

Query: 339 VYTRVTNYIQWIADNI 354
            YT+V NY+ WI   +
Sbjct: 223 FYTKVLNYVDWIKKEM 238

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 1e-35
 Identities = 85/255 (33%), Positives = 112/255 (43%), Gaps = 22/255 (8%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I GG  ++ G +PW   I                  GAL+   +VLTAAH V        
Sbjct: 1   IYGGQKAKPGDFPWQVLILGG-----------TTAAGALLYDNWVLTAAHAVYEQKHDAS 49

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSDLIQPI 226
              I       L           E   IHE YT      NDIAL +L     ++  I PI
Sbjct: 50  ALDIRMGTLKRLSPH--YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPI 107

Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN---YG 283
           CLP                 A       RG L+  L +V I +VD+ KC   +       
Sbjct: 108 CLPRKEA--ESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPR 165

Query: 284 ATINENILCAGVLSGGKDSCGGDSGGPLMY--PLDTKYYIIGVVSYGKK-CAEVGFPGVY 340
            ++  N+LCAG+ SGGKDSC GDSGG L++      ++++ G+VS+G   C E G  GVY
Sbjct: 166 GSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVY 225

Query: 341 TRVTNYIQWIADNIS 355
           T+V NYI WI + IS
Sbjct: 226 TKVINYIPWIENIIS 240

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 1e-35
 Identities = 70/247 (28%), Positives = 107/247 (43%), Gaps = 21/247 (8%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           +V G P+ R    WM ++       R   K   +CGG+LI + +VLTA  C       +Y
Sbjct: 1   VVNGIPT-RTNIGWMVSL-------RYRNK--HICGGSLIKESWVLTARQCFPSRDLKDY 50

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
           E ++         D       + ++ +   Q     + +D+ L +L   A L D +  I 
Sbjct: 51  EAWLGIH------DVHGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTID 104

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP      S + E+ +  V GWG T          R   + ++ N KC Q       T+N
Sbjct: 105 LPNY---GSTIPEKTSCSVYGWGYTGLINYDGLL-RVAHLYIMGNEKCSQHHRGKV-TLN 159

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
           E+ +CAG    G   C GD GGPL+        ++GV+  G+ CA    PG++ RV  Y 
Sbjct: 160 ESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYA 219

Query: 348 QWIADNI 354
           +WI   I
Sbjct: 220 KWIHKII 226

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (318), Expect = 1e-35
 Identities = 70/247 (28%), Positives = 105/247 (42%), Gaps = 25/247 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+GG  S     P+MA +  +      +   +  CGG L+ + +VLTAAHC   +     
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQ------SPAGQSRCGGFLVREDFVLTAAHCWGSNINVTL 54

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
             + +          ++   I   R I H QY      NDI L +L      +  + P+ 
Sbjct: 55  GAHNIQ------RRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVA 108

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP        L       VAGWG    R   +  LR VQ+ V  + +C +I   +G+   
Sbjct: 109 LPRAQE---GLRPGTLCTVAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRI---FGSYDP 161

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
              +C G     K +  GDSGGPL+          G+VSYGK       P V+TRV++++
Sbjct: 162 RRQICVGDRRERKAAFKGDSGGPLLC----NNVAHGIVSYGKSSG--VPPEVFTRVSSFL 215

Query: 348 QWIADNI 354
            WI   +
Sbjct: 216 PWIRTTM 222

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score =  126 bits (316), Expect = 3e-35
 Identities = 71/247 (28%), Positives = 112/247 (45%), Gaps = 27/247 (10%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +  G++P+  ++                CG +++    VLTAAHCV     G  
Sbjct: 1   IVGGKDAPVGKYPYQVSLRLS---------GSHRCGASILDNNNVLTAAHCV----DGLS 47

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
               + V       + SG   ++E  ++++ Y      ND+AL  L      +DL+QPI 
Sbjct: 48  NLNRLKVHVGTNYLSESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIK 107

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           L  +        E     + GWGST   G     L+ +++ V      +Q   +    I+
Sbjct: 108 LSTNDE----DLESNPCTLTGWGSTRLGGNTPNALQEIELIVHP---QKQCERDQWRVID 160

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
            +I        G+ +C GDSGGPL+         IG+VS+G  CA +G P VYTRV++++
Sbjct: 161 SHICTLT--KRGEGACHGDSGGPLVA----NGAQIGIVSFGSPCA-LGEPDVYTRVSSFV 213

Query: 348 QWIADNI 354
            WI  N+
Sbjct: 214 SWINANL 220

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (313), Expect = 8e-35
 Identities = 62/248 (25%), Positives = 90/248 (36%), Gaps = 29/248 (11%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  ++    P+MA++  +             CGG LI   +VLTAAHC+        
Sbjct: 1   IVGGHEAQPHSRPYMASLQMR------GNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLV 54

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              +      ++              +    Y +  KLNDI L +L   A LS  +  + 
Sbjct: 55  NVVLGA---HNVRTQEPTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVATVQ 111

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP        +         GWG      P +  L+ + ++VV                 
Sbjct: 112 LPQQDQ---PVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNI-------- 160

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNY 346
               C  V       C GDSGGPL+        I G+ S+    CA   FP  +TRV  Y
Sbjct: 161 ----CTFVPRRKAGICFGDSGGPLIC----DGIIQGIDSFVIWGCATRLFPDFFTRVALY 212

Query: 347 IQWIADNI 354
           + WI   +
Sbjct: 213 VDWIRSTL 220

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 3e-34
 Identities = 71/246 (28%), Positives = 113/246 (45%), Gaps = 26/246 (10%)

Query: 110 GGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEP 169
           GGT  +    P+MA +         +  P   CGG LI + +VLTAAHC           
Sbjct: 1   GGTECKPHSRPYMAYL-----EIVTSNGPSKFCGGFLIRRNFVLTAAHC-------AGRS 48

Query: 170 YIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICL 228
             V +G+ ++ E+  +   +E+ +   H +Y ++   +DI L +L+E A L+  +  +  
Sbjct: 49  ITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPF 108

Query: 229 PYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINE 288
           P   N        +   VAGWG T    P S  L+ V++ ++D     Q  S++    + 
Sbjct: 109 PSQFNFV---PPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDP----QACSHFRDFDHN 161

Query: 289 NILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQ 348
             LC G     K +  GDSGGPL+          G+VSYG+  A    P V+TR+++Y  
Sbjct: 162 LQLCVGNPRKTKSAFKGDSGGPLLC----AGVAQGIVSYGRSDA--KPPAVFTRISHYRP 215

Query: 349 WIADNI 354
           WI   +
Sbjct: 216 WINQIL 221

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 3e-34
 Identities = 71/271 (26%), Positives = 108/271 (39%), Gaps = 29/271 (10%)

Query: 97  CGV--NAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
           CGV    F   +RI+GG+ ++   +PW                     GGALI + +VLT
Sbjct: 1   CGVPREPFEEKQRIIGGSDADIKNFPWQVFFDNPW------------AGGALINEYWVLT 48

Query: 155 AAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERP----IIHEQYTSARKLNDIAL 210
           AAH V  +           V +  L  +       +       ++          NDIAL
Sbjct: 49  AAHVVEGNREPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIAL 108

Query: 211 FRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST----VFRGPLSPKLRHVQ 266
            RL++   +   + PICL   T+    L +     ++GWG T          + +L    
Sbjct: 109 VRLKDPVKMGPTVSPICL-PGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAP 167

Query: 267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL---DTKYYIIG 323
           +      K  +  ++  A +    +       G DSC GDSGG          TK+Y  G
Sbjct: 168 LRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAG 227

Query: 324 VVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
           +VS+G +C   G  G+YTRV NY+ WI   +
Sbjct: 228 LVSWGPQC---GTYGLYTRVKNYVDWIMKTM 255

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 4e-31
 Identities = 57/248 (22%), Positives = 91/248 (36%), Gaps = 32/248 (12%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +    WP+M ++  +             CG  LI   +V++AAHCV+       
Sbjct: 1   IVGGRRARPHAWPFMVSLQLR---------GGHFCGATLIAPNFVMSAAHCVANVN---V 48

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
               V +G+ +L        +   + I    Y     LNDI + +L   A ++  +Q   
Sbjct: 49  RAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQ 108

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP                  GWG       ++  L+ + ++VV +   R           
Sbjct: 109 LPAQGRRL---GNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNV-------- 157

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNY 346
               C  V       C GDSG PL+        I G+ S+ +  CA   +P  +  V  +
Sbjct: 158 ----CTLVRGRQAGVCFGDSGSPLVC----NGLIHGIASFVRGGCASGLYPDAFAPVAQF 209

Query: 347 IQWIADNI 354
           + WI   I
Sbjct: 210 VNWIDSII 217

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 5e-31
 Identities = 68/248 (27%), Positives = 99/248 (39%), Gaps = 30/248 (12%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           IVGG  +   Q+P++A+I  + R           CGGALI  R+V+TAA C      G  
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGR---------HFCGGALIHARFVMTAASCFQSQNPGVS 51

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
              +        E             +    Y   + LND+ L +L  +A L+  +  + 
Sbjct: 52  TVVLGAYDLRRRERQ--SRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILP 109

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP      + +       VAGWGS    G LS   R V ++V    +CR           
Sbjct: 110 LPLQ---NATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP---------- 156

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
            N +C GVL+     C GD G PL+     +    GV S+       G P  +TRV  + 
Sbjct: 157 -NNVCTGVLTRRGGICNGDGGTPLVC----EGLAHGVASFSLGPCGRG-PDFFTRVALFR 210

Query: 348 QWIADNIS 355
            WI   ++
Sbjct: 211 DWIDGVLN 218

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score =  111 bits (276), Expect = 2e-29
 Identities = 70/248 (28%), Positives = 104/248 (41%), Gaps = 23/248 (9%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           I+ G  +  G +P+ A +   ++ +R        CGG+LI  +++LTAAHC        +
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQR-----RVWCGGSLIDNKWILTAAHC-------VH 48

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
           +   V V             +  ER I H  +     LND+AL ++       + IQPI 
Sbjct: 49  DAVSVVVYLGSAVQYEGEAVVNSERIISHSMFNPDTYLNDVALIKIPHVEYTDN-IQPIR 107

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
           LP    L      +     A           +  L++    V+DN +C Q +      I 
Sbjct: 108 LPSGEEL----NNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPG---II 160

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA-EVGFPGVYTRVTNY 346
                 G  S GK  C GDSGGP +     K  +IGVVS+      E G P  ++RVT+Y
Sbjct: 161 VESTICGDTSDGKSPCFGDSGGPFVL--SDKNLLIGVVSFVSGAGCESGKPVGFSRVTSY 218

Query: 347 IQWIADNI 354
           + WI  N 
Sbjct: 219 MDWIQQNT 226

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score =  102 bits (255), Expect = 2e-26
 Identities = 34/249 (13%), Positives = 67/249 (26%), Gaps = 43/249 (17%)

Query: 108 IVGGT-----PSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPD 162
           +V G       +     P+ +                  C G LI    +LT  HCV   
Sbjct: 1   VVIGDDGRTKVANTRVAPYNSIAYITF--------GGSSCTGTLIAPNKILTNGHCVYNT 52

Query: 163 TTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
            +  Y         ++     +G +   E  +      +     D A+ +   +   +  
Sbjct: 53  ASRSYSAKGSVYPGMNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNTVG 112

Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY 282
            + I        +       T  ++G+     R         +  SV         ++  
Sbjct: 113 YRSIR-------QVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLAYYTID 165

Query: 283 GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV-GFPGVYT 341
                              +  G+SG  ++   D    I+GV + G     + G P    
Sbjct: 166 -------------------TFSGNSGSAML---DQNQQIVGVHNAGYSNGTINGGPKATA 203

Query: 342 RVTNYIQWI 350
               +I + 
Sbjct: 204 AFVEFINYA 212

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score =  103 bits (258), Expect = 2e-26
 Identities = 35/225 (15%), Positives = 58/225 (25%), Gaps = 25/225 (11%)

Query: 140 WMCGGALI------TKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERP 193
             C G+L+       K Y LTA HC     +       + V        S+  +      
Sbjct: 34  LACTGSLVNNTANDRKMYFLTAHHCGMGTAS---TAASIVVYWNYQ--NSTCRAPNTPAS 88

Query: 194 IIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTV 253
             +   + ++  +   +      +  + L                      F AGW    
Sbjct: 89  GANGDGSMSQTQSGSTVKATYATSDFTLLELNNAAN----------PAFNLFWAGWDRRD 138

Query: 254 --FRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPL 311
             + G ++    +V    + N      F  +G       L       G  +  G SG P+
Sbjct: 139 QNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEPGSSGSPI 198

Query: 312 MYPL-DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
             P       + G  S             Y RV           S
Sbjct: 199 YSPEKRVLGQLHGGPSSCSATGT-NRSDQYGRVFTSWTGGGAAAS 242

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

 Score = 71.9 bits (175), Expect = 2e-15
 Identities = 29/242 (11%), Positives = 57/242 (23%), Gaps = 61/242 (25%)

Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
           ++GG     G      +  F + +                  RY +TA HC         
Sbjct: 1   VLGGGAIYGGGS--RCSAAFNVTKG---------------GARYFVTAGHCT-------- 35

Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
                        + S+  S      ++  +  ++   ND  + R  + +  +  +    
Sbjct: 36  -------------NISANWSASSGGSVVGVREGTSFPTNDYGIVRYTDGSSPAGTVDLYN 82

Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
                   +                               S         +    G    
Sbjct: 83  GSTQDISSAANAVVGQAIKKSG------------STTKVTSGTVTAVNVTVNYGDG---- 126

Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
                  ++     S GGDSGG            +G+ S    C+      ++  VT  +
Sbjct: 127 ---PVYNMVRTTACSAGGDSGGAHF----AGSVALGIHSGSSGCSGTAGSAIHQPVTEAL 179

Query: 348 QW 349
             
Sbjct: 180 SA 181

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 65.4 bits (158), Expect = 4e-13
 Identities = 29/237 (12%), Positives = 64/237 (27%), Gaps = 42/237 (17%)

Query: 118 QWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSI 177
              +      ++          ++  G ++ K  +LT  H V       +          
Sbjct: 16  NGHYAPVTYIQVE----APTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAIN 71

Query: 178 DLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSE 237
                              EQ T      D+A+ +   +     + + +     +N    
Sbjct: 72  Q--------DNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSN---- 119

Query: 238 LFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS 297
                                +    +  I+V   P  + + + + +      L    + 
Sbjct: 120 --------------------NAETQTNQNITVTGYPGDKPVATMWESKGKITYLKGEAMQ 159

Query: 298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
               + GG+SG P+    + K  +IG+   G          V+    N   ++  NI
Sbjct: 160 YDLSTTGGNSGSPV---FNEKNEVIGIHWGG--VPNEFNGAVFI-NENVRNFLKQNI 210

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

 Score = 50.8 bits (120), Expect = 5e-08
 Identities = 48/261 (18%), Positives = 80/261 (30%), Gaps = 39/261 (14%)

Query: 94  NNECGVNAFNSSK-RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYV 152
           N   GVNAFN  K         +R ++P+   IG          K +    G LI K  V
Sbjct: 15  NKYYGVNAFNLPKELFSKVDEKDRQKYPYNT-IG------NVFVKGQTSATGVLIGKNTV 67

Query: 153 LTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFR 212
           LT  H             +    SI+ +D  +  +   E  +            D+AL R
Sbjct: 68  LTNRHIA--KFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFGAGVDLALIR 125

Query: 213 LREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDN 272
           L+ D     L   I                +P   G  + +  G        +     D+
Sbjct: 126 LKPDQNGVSLGDKI----------------SPAKIGTSNDLKDGDKL----ELIGYPFDH 165

Query: 273 PKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA 332
              +   S    T     L          +  G+SG  +    ++   ++G+ S      
Sbjct: 166 KVNQMHRSEIELTTLSRGLRYYG-----FTVPGNSGSGI---FNSNGELVGIHSSKVSHL 217

Query: 333 EV-GFPGVYTRVTNYIQWIAD 352
           +          + NY++ I +
Sbjct: 218 DREHQINYGVGIGNYVKRIIN 238

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]} Length = 246

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

 Score = 48.0 bits (113), Expect = 5e-07
 Identities = 24/193 (12%), Positives = 52/193 (26%), Gaps = 9/193 (4%)

Query: 133 RANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIER 192
               K   +  G LI K  ++T  H    +        I         + +   +   + 
Sbjct: 41  TVFVKGSTLATGVLIGKNTIVTNYHVAR-EAAKNPSNIIFTPAQNRDAEKNEFPTPYGKF 99

Query: 193 PIIHEQYTSARKLNDIALFRLRED---APLSDLIQPICLPYDTNLRSELFERKTPFVAGW 249
                + +   +  D+A+ +L+ +       DLIQP  +P   ++          +   +
Sbjct: 100 EAEEIKESPYGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNY 159

Query: 250 GSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGG 309
            +              Q             ++     N      G+ SG         G 
Sbjct: 160 SAYSLYQSQIEMFNDSQYFGYTEVG-----NSGSGIFNLKGELIGIHSGKGGQHNLPIGV 214

Query: 310 PLMYPLDTKYYII 322
                + + Y + 
Sbjct: 215 FFNRKISSLYSVD 227

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	355
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	100.0
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	100.0
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	100.0
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	100.0
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	100.0
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	100.0
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	100.0
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	100.0
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	100.0
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	100.0
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	100.0
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	100.0
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	100.0
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	100.0
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	100.0
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	100.0
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	100.0
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	100.0
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	100.0
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	100.0
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	100.0
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	100.0
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	100.0
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	100.0
d1elva1	259	Complement C1S protease, catalytic domain {Human (	100.0
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	100.0
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	100.0
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	100.0
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	100.0
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	100.0
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	100.0
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	100.0
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	100.0
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	100.0
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	100.0
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	100.0
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	100.0
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	100.0
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	100.0
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	99.94
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	99.93
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	99.79
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	99.73
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	99.68
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	99.4
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	99.11
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	99.01
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	98.77
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.76
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	98.63
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	98.6
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	98.44
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	98.43
d2bhga1	199	3C cysteine protease (picornain 3C) {Foot-and-mout	98.18
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	98.08
d1cqqa_	180	3C cysteine protease (picornain 3C) {Human rhinovi	94.91
d2h6ma1	212	3C cysteine protease (picornain 3C) {Human hepatit	81.97

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-50  Score=353.35  Aligned_cols=233  Identities=35%  Similarity=0.713  Sum_probs=201.7

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC--CCc
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT--SSG  185 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~--~~~  185 (355)
                      |+||++|..++|||+|.|++..         .++|+||||+++||||||||+... ........+.++..+....  ...
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~---------~~~C~GtLIs~~~VLTaAhCv~~~-~~~~~~~~~~~~~~~~~~~~~~~~   70 (235)
T d1ekbb_           1 IVGGSDSREGAWPWVVALYFDD---------QQVCGASLVSRDWLVSAAHCVYGR-NMEPSKWKAVLGLHMASNLTSPQI   70 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT---------EEEEEEEECSSSEEEECHHHHTTC-CSSGGGEEEEESCCBTTCCCCTTC
T ss_pred             CCCCEECCCCCCCcEEEEEECC---------CEEEEEEEEcCCEEEEChhhccCC-CCCccceeeeecccccccccCcce
Confidence            7899999999999999997643         478999999999999999999763 2233456677776654432  566


Q ss_pred             EEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEE
Q psy2626         186 VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHV  265 (355)
Q Consensus       186 ~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~  265 (355)
                      +.+.|.++++||+|+.....||||||||++++.|+++++|||||....   ....+..+.++|||.....+.....|+..
T Consensus        71 ~~~~v~~~~~hp~~~~~~~~~diAli~L~~~v~~~~~~~picLp~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~l~~~  147 (235)
T d1ekbb_          71 ETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQ---VFPPGRICSIAGWGALIYQGSTADVLQEA  147 (235)
T ss_dssp             EEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTC---CCCTTCEEEEEESSBSSTTSCBCSBCEEE
T ss_pred             eEeeeeeeeecccccccCccchhhhhhhcCceecCCceeeEECCCccc---cCCcceEEEEecccccccCCcccccceee
Confidence            789999999999999999999999999999999999999999997654   34567889999999988766667789999


Q ss_pred             EEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcc
Q psy2626         266 QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN  345 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~  345 (355)
                      .+.+++.+.|...+..  ....+.++|+....+..+.|.|||||||++..+++|+|+||+|+|..|+..+.|++||||..
T Consensus       148 ~~~~~~~~~~~~~~~~--~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~S~g~~~~~~~~p~v~t~v~~  225 (235)
T d1ekbb_         148 DVPLLSNEKCQQQMPE--YNITENMVCAGYEAGGVDSCQGDSGGPLMCQENNRWLLAGVTSFGYQCALPNRPGVYARVPR  225 (235)
T ss_dssp             EEEBCCHHHHHHHCTT--SCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGG
T ss_pred             EEEEecHHHhcccccc--cccCcccEEEEcCCCCcccccCCCCCccEEccCCEEEEEEEEEecCCCCCCCCCEEEEEHHH
Confidence            9999999999887664  46788899998877677899999999999999999999999999999988889999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++|+
T Consensus       226 y~~WI~~~i~  235 (235)
T d1ekbb_         226 FTEWIQSFLH  235 (235)
T ss_dssp             THHHHHTTCC
T ss_pred             HHHHHHHhhC
Confidence            9999999874

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-50  Score=352.70  Aligned_cols=235  Identities=34%  Similarity=0.695  Sum_probs=202.1

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccC-CCCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLED-TSSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~-~~~~~  186 (355)
                      |+||++|+++||||||.|++...      ...++|+||||+++||||||||+...  .......+..+...... ....+
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~------~~~~~C~GtLIs~~~VLTaAhCv~~~--~~~~~~~~~~~~~~~~~~~~~~~   72 (237)
T d1xx9a_           1 IVGGTASVRGEWPWQVTLHTTSP------TQRHLCGGSIIGNQWILTAAHCFYGV--ESPKILRVYSGILNQSEIKEDTS   72 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEEESS------SEEEEEEEEEEETTEEEECGGGGTTC--SCGGGEEEEESCSBGGGCCTTCC
T ss_pred             CCCCEECCCCCCCcEEEEEECCC------CccEEEEEEEEeCCEEEeCeEeeecc--cCccceeeecccccccccccceE
Confidence            78999999999999999976532      33578999999999999999999762  22344556655544433 35667


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|++++.||.|+.....+|||||+|++++.+.++++|||++....   .......+.+.||+...........++...
T Consensus        73 ~~~v~~~~~h~~~~~~~~~~diAll~L~~~v~~~~~~~pi~~~~~~~---~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  149 (237)
T d1xx9a_          73 FFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGD---RNVIYTDCWVTGWGYRKLRDKIQNTLQKAK  149 (237)
T ss_dssp             CEEEEEEEECTTCSCTTTSCCCEEEEESSCCCCBTTBCCCBCCCTTC---TTCCCSCEEEEESCCSSTTCCCCSBCEEEE
T ss_pred             EEEeeEEEEecccccccccceeEEEEeccccccccccceEEeccccc---ccccccccEEEEeecccccccCCCccEEEE
Confidence            88999999999999999999999999999999999999999987664   344666789999998877776788899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.++|+..+..  ..+.+.++|++......+.|.|||||||++..+++|+|+||+|+|..|+..+.|++||||++|
T Consensus       150 ~~~~~~~~C~~~~~~--~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~s~g~~~~~~~~p~vft~v~~~  227 (237)
T d1xx9a_         150 IPLVTNEECQKRYRG--HKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEY  227 (237)
T ss_dssp             CCEECHHHHHHHTTT--SCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEEESSSSCTTCCEEEECGGGG
T ss_pred             EEEeCHHHHhhhhcC--CCCCCceEEEecCCCCcccccCCccceeEEecCCEEEEEEEEEeCCCCCCCCCCEEEEEhHHh
Confidence            999999999988765  367899999987776789999999999999999999999999999999888899999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       228 ~~WI~~~~~  236 (237)
T d1xx9a_         228 VDWILEKTQ  236 (237)
T ss_dssp             HHHHHHHHC
T ss_pred             HhHHHHHHC
Confidence            999999986

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.4e-50  Score=356.70  Aligned_cols=246  Identities=36%  Similarity=0.655  Sum_probs=203.0

Q ss_pred             CCCCCcC--CCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEe
Q psy2626          97 CGVNAFN--SSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHV  174 (355)
Q Consensus        97 CG~~~~~--~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~  174 (355)
                      ||+....  .+.||+||++|+.++|||+|.|.+..     ++...++|+|+||+++||||||||+.....   ....+..
T Consensus         1 cg~~~~~~~~~~ri~gG~~a~~~~~Pw~v~i~~~~-----~~~~~~~C~G~LIs~~~VLTaAhC~~~~~~---~~~~~~~   72 (251)
T d1pytd_           1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLR-----DNTWRHTCGGTLITPNHVLTAAHCISNTLT---YRVALGK   72 (251)
T ss_dssp             CCCCSSCCCSSSSCCSSCCCCTTSSTTEEEEEEEE-----TTEEEEEEEEEEEETTEEEECGGGCCTTCC---EEEEESC
T ss_pred             CcCCCCCCCCCCeEECCEECCCCCCCcEEEEEEEe-----CCCceeEEeEEEEcCCeEEEeeeccccccc---ceeeeee
Confidence            6665432  46899999999999999999998753     333467899999999999999999976221   1122222


Q ss_pred             ccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCC
Q psy2626         175 GSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVF  254 (355)
Q Consensus       175 G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~  254 (355)
                      +..........+...|.++++||.|+.....||||||+|.+|+.|++.++|||||....   ....+..+.+.||+.+..
T Consensus        73 ~~~~~~~~~~~~~~~v~~i~~h~~y~~~~~~~diali~l~~pi~~~~~~~pi~l~~~~~---~~~~~~~~~~~g~~~~~~  149 (251)
T d1pytd_          73 NNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGS---LLPQDYPCFVTGWGRLYT  149 (251)
T ss_dssp             SBTTCSCCSSCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTC---CCCTTCEEEECBCCCSSC
T ss_pred             eeeecccCCCceEEeEEEEEEeeeecccccCCceeeeecCCCcccCceeEEEEeecccc---CCCCceeEEEecCccccC
Confidence            22233334566889999999999999999999999999999999999999999997765   345677889999999887


Q ss_pred             CCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC--CC
Q psy2626         255 RGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CA  332 (355)
Q Consensus       255 ~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~--C~  332 (355)
                      .+.....++...+.+++...|...+.. .......++|++... ..+.|.||+||||++..+++|+|+||+|||..  |+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~~~~~~c~~~~~-~~~~c~gd~G~Pl~~~~~~~~~L~Gi~S~~~~~~c~  227 (251)
T d1pytd_         150 NGPIAAELQQGLQPVVDYATCSQRDWW-GTTVKETMVCAGGDG-VISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCN  227 (251)
T ss_dssp             CSCCCSBCBCCEEECBCHHHHTSTTTT-TTTCCTTEEEECCSC-SSCCCCSCTTCEEEEESSSSEEEEEEEEECCSSCTT
T ss_pred             CCcccceeceeeccccCHHHHhhhhcc-cccccCceEEeccCC-CCccccCCCCCceEEeeCCEEEEEEEEEECCCCCCC
Confidence            776777888899999999999886543 346778899998755 67899999999999999999999999999865  77


Q ss_pred             CCCCCcEEEeCcccHHHHHhHhC
Q psy2626         333 EVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       333 ~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      ..+.|++||||+.|++||+++||
T Consensus       228 ~~~~p~vyt~v~~y~~WI~~~i~  250 (251)
T d1pytd_         228 TFKKPTVFTRVSAYIDWINQKLQ  250 (251)
T ss_dssp             BTTBCEEEEEGGGGHHHHHHHTT
T ss_pred             CCCCCeEEEEHHHhHHHHHHhcc
Confidence            77889999999999999999996

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=100.00  E-value=1.2e-49  Score=350.05  Aligned_cols=235  Identities=34%  Similarity=0.641  Sum_probs=200.6

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||+++.++||||+|.|++...     +...++|+||||+++||||||||+..........+.+..+....... ...+
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~~-----~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (237)
T d2f91a1           1 IVGGTDATLGEFPYQLSFQETFI-----GFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQ   75 (237)
T ss_dssp             CBSCEECCTTTSTTEEEEEEEET-----TEEEEEEEEEEEETTEEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCSCCE
T ss_pred             CCCCEECCCCCCCcEEEEEEecC-----CCCcEEEEEEEEeCCEEEECcccccccCCccccceeEEeeecccccccCcce
Confidence            78999999999999999976542     33357899999999999999999987433333445555554444332 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....+|||||+|.+++.+++.+.||||+....     ..+..+.++|||.+...+..+..|+++.
T Consensus        76 ~~~v~~i~~h~~y~~~~~~~diAll~l~~~v~~~~~~~~i~~~~~~~-----~~~~~~~~~g~g~~~~~~~~~~~l~~~~  150 (237)
T d2f91a1          76 IITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGH-----TATGDVIVTGWGTTSEGGNTPDVLQKVT  150 (237)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTC-----CCCSEEEEEESCCSSTTCCCCSBCEEEE
T ss_pred             eeeEEEEEEccccCCCccccceeeeccccccccCCceeeeeccccCc-----ccccceeeccccccCCCCcCCchheEEE
Confidence            88999999999999999999999999999999999999999987653     4567889999999987776778899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +.+++.+.|+..+..  ..+.+.++|........+.|.|||||||++..+++|+|+||+|+|..|+..+.|++||+|++|
T Consensus       151 ~~~~~~~~C~~~~~~--~~~~~~~~c~~~~~~~~~~~~gdsG~Pl~~~~~~~~~L~Gi~S~g~~c~~~~~p~v~t~v~~y  228 (237)
T d2f91a1         151 VPLVSDEDCRADYGA--DEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYH  228 (237)
T ss_dssp             EEEECHHHHHHHHCT--TTSCTTEEEECCTTCCCBCCTTCTTCEEEECTTSSCEEEEEEEEESSSSCTTCCEEEEEGGGS
T ss_pred             EEEeCHHHHhhhccC--CcccCceeEeecCCCccccccCCCCCeEEEecCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHH
Confidence            999999999988764  357788999988777788999999999999999999999999999999988899999999999


Q ss_pred             HHHHHhHh
Q psy2626         347 IQWIADNI  354 (355)
Q Consensus       347 ~~WI~~~i  354 (355)
                      ++||++++
T Consensus       229 ~~WI~~n~  236 (237)
T d2f91a1         229 VDWIKANA  236 (237)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99999886

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-49  Score=349.53  Aligned_cols=233  Identities=34%  Similarity=0.676  Sum_probs=199.7

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCC---CCcCceEEEeccccccCC--
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTT---GEYEPYIVHVGSIDLEDT--  182 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~---~~~~~~~v~~G~~~~~~~--  182 (355)
                      |+||++|+++||||+|.|++..        ..++|+||||+++||||||||+.....   .......+..+..+....  
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~--------~~~~C~GtlIs~~~VLTaA~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (241)
T d1eaxa_           1 VVGGTDADEGEWPWQVSLHALG--------QGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSA   72 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT--------TEEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCCBTTCTTS
T ss_pred             CCCCEECCCCCCCcEEEEEECC--------CCEEEEEEEEcCCEEEECeeeeecCCceeeeccceeeEEeeeeecccccC
Confidence            7899999999999999997543        257999999999999999999976321   223345666666654443  


Q ss_pred             CCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccc
Q psy2626         183 SSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKL  262 (355)
Q Consensus       183 ~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l  262 (355)
                      +..+.+.|+++++||+|+.....||||||||+.|+.|++.++|||||....   ....+..+...||+...........|
T Consensus        73 ~~~~~~~v~~i~~Hp~y~~~~~~~diAll~L~~~~~~~~~~~~i~l~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~l  149 (241)
T d1eaxa_          73 PGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASH---VFPAGKAIWVTGWGHTQYGGTGALIL  149 (241)
T ss_dssp             TTCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTC---CCCTTCEEEEEESSBSSTTSCBCSBC
T ss_pred             CCcEEEEEEEEEECCcccccccCCcccccccCCceecCcccceeecccccc---ccccceeEEEeccCCccccccccccc
Confidence            567899999999999999999999999999999999999999999997654   34466778889999887776677889


Q ss_pred             eEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeee-CCeEEEEEEEEeCCCCCCCCCCcEEE
Q psy2626         263 RHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGKKCAEVGFPGVYT  341 (355)
Q Consensus       263 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-~~~~~lvGI~S~g~~C~~~~~p~vyt  341 (355)
                      +...+.+++.+.|+..+..   .+...++|++...+..+.|.||+||||++.. +++|+|+||+|+|..|+..+.|++||
T Consensus       150 ~~~~~~~~~~~~C~~~~~~---~~~~~~~c~~~~~~~~~~c~gd~G~pl~~~~~~g~~~L~Gi~s~~~~c~~~~~p~vft  226 (241)
T d1eaxa_         150 QKGEIRVINQTTCENLLPQ---QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYT  226 (241)
T ss_dssp             EEEEEEECCHHHHHHHSTT---TCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEE
T ss_pred             eEEEEEEeCHHHHHHHhCc---cccCccceeccCCCCcccccCcccceeEEEcCCCeEEEEEEEEECCCCCCCCCCEEEE
Confidence            9999999999999998865   5788999998877778999999999999865 58999999999999998888999999


Q ss_pred             eCcccHHHHHhHh
Q psy2626         342 RVTNYIQWIADNI  354 (355)
Q Consensus       342 ~V~~y~~WI~~~i  354 (355)
                      ||++|++||++++
T Consensus       227 ~V~~y~~WI~~~~  239 (241)
T d1eaxa_         227 RLPLFRDWIKENT  239 (241)
T ss_dssp             ESGGGHHHHHHHH
T ss_pred             EHHHHHHHHHHHh
Confidence            9999999999987

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-49  Score=347.59  Aligned_cols=226  Identities=31%  Similarity=0.569  Sum_probs=190.9

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccC-CCCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLED-TSSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~-~~~~~  186 (355)
                      |+||++|+++||||||+|.+..         .++|+||||+++||||||||+...      ...+.++..+... ....+
T Consensus         1 ivgG~~a~~~e~Pw~v~i~~~~---------~~~C~GtLIs~~~VLTaAhCv~~~------~~~~~~~~~~~~~~~~~~~   65 (232)
T d1orfa_           1 IIGGNEVTPHSRPYMVLLSLDR---------KTICAGALIAKDWVLTAAHCNLNK------RSQVILGAHSITREEPTKQ   65 (232)
T ss_dssp             CBSCEECCTTSSTTEEEEECSS---------SCEEEEEEEETTEEEECTTCCCCT------TCEEEESCSBSSSCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC---------CEEEEEEEecCCEEEEChhhcCCC------Ccceeeeeeeccccccccc
Confidence            7899999999999999996532         478999999999999999999762      2234444444333 34567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      ...++.++.||+|+.....||||||+|++++.++++++|||||....   ....+..+.++|||.+...+..+..|+.+.
T Consensus        66 ~~~~~~i~~hp~y~~~~~~~diAll~l~~~~~~~~~~~~i~l~~~~~---~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~  142 (232)
T d1orfa_          66 IMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGD---DVKPGTMCQVAGWGRTHNSASWSDTLREVE  142 (232)
T ss_dssp             EECEEEEEECTTCCTTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCC---CCCTTCEEEEEESSCSSSSSCCCSBCEEEE
T ss_pred             cceEEEEEecccccccccCcceeEeeeccceeeeeeEeeeeeccccc---ccccCceeeeccccccCCcccCChhheEEE
Confidence            77889999999999999999999999999999999999999997664   345678899999999987777788999999


Q ss_pred             EeeeChhHHHhhhhcC-CCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC--CCCCCCCcEEEeC
Q psy2626         267 ISVVDNPKCRQIFSNY-GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYTRV  343 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~-~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~--C~~~~~p~vyt~V  343 (355)
                      +++++.++|+..+... ...+.++++|++......+.|.|||||||++.    ++|+||+|||..  |+..+.|+|||||
T Consensus       143 ~~~~~~~~C~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~gdsG~Pl~~~----~~l~GI~S~g~~~~c~~~~~p~vyt~V  218 (232)
T d1orfa_         143 ITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE----GVFRGVTSFGLENKCGDPRGPGVYILL  218 (232)
T ss_dssp             EEEECHHHHTSTTTTTTTTCCCTTEEEEECSSCCCBCCTTCTTCEEEET----TEEEEEEEECCTTCTTCTTSCEEEEEC
T ss_pred             eecCCHHHHhhhhhcccCccccCceEEeccCCCCcccccccCCCeEEEc----CEEEEEEEEECCCCCCCCCCCcEEEEe
Confidence            9999999998765432 34678899999887767899999999999984    489999999854  8888889999999


Q ss_pred             c-ccHHHHHhHhC
Q psy2626         344 T-NYIQWIADNIS  355 (355)
Q Consensus       344 ~-~y~~WI~~~i~  355 (355)
                      + .|++||+++|+
T Consensus       219 s~~y~~WI~~~i~  231 (232)
T d1orfa_         219 SKKHLNWIIMTIK  231 (232)
T ss_dssp             CHHHHHHHHHHHC
T ss_pred             eHHHHHHHHHHhC
Confidence            7 79999999986

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-49  Score=346.43  Aligned_cols=232  Identities=34%  Similarity=0.653  Sum_probs=195.9

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccc-cCCCCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL-EDTSSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~-~~~~~~~  186 (355)
                      |+||++|+.++|||+|+|....        ..++|+||||+++||||||||+.+..     ...+....... ......+
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~--------~~~~C~GtlIs~~~VLTaAhCv~~~~-----~~~~~~~~~~~~~~~~~~~   67 (233)
T d2p3ub1           1 IVGGQECKDGECPWQALLINEE--------NEGFCGGTILSEFYILTAAHCLYQAK-----RFKVRVGDRNTEQEEGGEA   67 (233)
T ss_dssp             CBSSEECCTTSCTTEEEEECTT--------SCEEEEEEECSSSEEEECGGGGGSCS-----SCEEEESCSBTTSCCSCCE
T ss_pred             CCCCEECCCCCCCcEEEEEecC--------CCeEEEEEEEeCCEEEECceeccccc-----ccccccccccccccCCCce
Confidence            7899999999999999996432        25789999999999999999997622     12233222222 2234667


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.++++++||+|+.....+|||||+|++|+.++++++|+|||..............+.+.||+.....+.....++...
T Consensus        68 ~~~~~~i~~h~~~~~~~~~~diAll~L~~pv~~~~~v~pi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (233)
T d2p3ub1          68 VHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLE  147 (233)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEE
T ss_pred             eecceeEEEeecccccccccceeeeecccceeecccccccccCCcccccccccccceEEEecCCccccCCCccccccccc
Confidence            88999999999999999999999999999999999999999997754444455666788899998877766777889999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.+.|...+..   .+..+++|+.........|.||+||||++..+++|+|+||+|||..|+..+.|++||||++|
T Consensus       148 ~~~~~~~~C~~~~~~---~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~~~~~L~Gv~s~g~~c~~~~~p~vyt~v~~y  224 (233)
T d2p3ub1         148 VPYVDRNSCKLSSSF---IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF  224 (233)
T ss_dssp             EEBCCHHHHHHHCSS---CCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGG
T ss_pred             cccccchhhhcccCc---eEeecceeeecccccCCCcCCCcccccEEecCCeEEEEEEEEECCCCCCCCCCEEEEEHHHH
Confidence            999999999987753   56788999887777788999999999999999999999999999999988899999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++||
T Consensus       225 ~~WI~~~i~  233 (233)
T d2p3ub1         225 LKWIDRSMK  233 (233)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhC
Confidence            999999996

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.1e-49  Score=344.46  Aligned_cols=225  Identities=31%  Similarity=0.541  Sum_probs=195.0

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||++|.++||||+|+|.+...     ....++|+||||+++||||||||+..       ...|++|.+++... ...+
T Consensus         1 I~gG~~a~~ge~P~~v~i~~~~~-----~~~~~~C~GtLI~~~~VLTaAhC~~~-------~~~v~~G~~~~~~~~~~~~   68 (227)
T d1fi8a_           1 IIGGHEAKPHSRPYMAYLQIMDE-----YSGSKKCGGFLIREDFVLTAAHCSGS-------KIQVTLGAHNIKEQEKMQQ   68 (227)
T ss_dssp             CBSCEECCTTSSTTEEEEEEECT-----TC-CCEEEEEEEETTEEEECGGGCCS-------EEEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCCEEEEEEEeC-----CCCceEEEEEEEeCCEEEEecccccc-------cceeeeeecccccCCCCce
Confidence            78999999999999999977643     22357899999999999999999864       45699998877654 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      ...|.++++||.|+.....||||||+|++++.|+++++|||||....   ....+..+.+.|||........+..++...
T Consensus        69 ~~~v~~i~~~~~~~~~~~~~diall~l~~~i~~~~~v~picl~~~~~---~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~  145 (227)
T d1fi8a_          69 IIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNV---KVKPGDVCYVAGWGKLGPMGKYSDTLQEVE  145 (227)
T ss_dssp             EEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCCCCCTTC---CCCTTCEEEEEESCBSSTTCCBCSBCEEEE
T ss_pred             EEEEEEEEecccccCccccchhhhhhccCceeeeeeEEEEEecccCc---ccCCCCEEEEEeeccccCCCCCCceeeEEE
Confidence            88999999999999999999999999999999999999999997664   445678899999999887776788899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +.+++++.|...+..  .......+|+.......+.|.|||||||++.    ++|+||+|+|..|+  +.|++||||++|
T Consensus       146 ~~~~~~~~c~~~~~~--~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~----~~l~Gi~S~g~~~~--~~p~vyt~v~~y  217 (227)
T d1fi8a_         146 LTVQEDQKCESYLKN--YFDKANEICAGDPKIKRASFRGDSGGPLVCK----KVAAGIVSYGQNDG--STPRAFTKVSTF  217 (227)
T ss_dssp             EEBCCHHHHHHHTTT--TCCTTTEEEESCTTSCCBCCTTCTTSEEEET----TEEEEEEEEEETTC--CSCEEEEEGGGG
T ss_pred             EEEEEchhhhhhhhc--ccccceeeeeeeccccCCCcCCCcCCEEEEC----CEEEEEEEEcCCCC--CCCeEEEEHHHH
Confidence            999999999988764  2456778888877767889999999999983    59999999998886  469999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       218 ~~WI~~~i~  226 (227)
T d1fi8a_         218 LSWIKKTMK  226 (227)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHc
Confidence            999999986

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-49  Score=346.93  Aligned_cols=230  Identities=33%  Similarity=0.541  Sum_probs=194.0

Q ss_pred             ceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCc
Q psy2626         107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSG  185 (355)
Q Consensus       107 ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~  185 (355)
                      ||+||++|+++||||+|.|.+..         .++|+||||+++||||||||+...  .......|..+....... ...
T Consensus         2 ri~gG~~a~~~e~Pw~v~i~~~~---------~~~C~GtLIs~~~VLTAAhCv~~~--~~~~~~~v~~~~~~~~~~~~~~   70 (240)
T d1mzaa_           2 EIIGGKEVSPHSRPFMASIQYGG---------HHVCGGVLIDPQWVLTAAHCQYRF--TKGQSPTVVLGAHSLSKNEASK   70 (240)
T ss_dssp             CCCCCEECCTTSSTTEEEEEETT---------EEEEEEEEEETTEEEECGGGSCTT--CSCSCEEEEESCSBSSSCCTTC
T ss_pred             EEECCEECCCCCCCcEEEEEECC---------eEEEEEEEEeCCEEEECeEccccc--CCcceeEEEEeecccCcCCccc
Confidence            89999999999999999997642         478999999999999999999763  233456777777666544 456


Q ss_pred             EEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCC-CCCCCccceE
Q psy2626         186 VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVF-RGPLSPKLRH  264 (355)
Q Consensus       186 ~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~-~~~~~~~l~~  264 (355)
                      ..+.+.+++.||.|+.....+|||||+|++++.|++.++|||||....    ......+.+.|||.+.. ....+..|+.
T Consensus        71 ~~~~~~~i~~h~~~~~~~~~~diAll~l~~~~~~~~~~~picL~~~~~----~~~~~~~~~~g~g~~~~~~~~~~~~l~~  146 (240)
T d1mzaa_          71 QTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTS----LRSGTKCKVTGWGATDPDSLRPSDTLRE  146 (240)
T ss_dssp             EEEEEEEEEECCCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCC----CCTTCEEEEEECCCSSTTCSSCCSBCEE
T ss_pred             eeEeeeeeeeeccccccccCcceEEEeecceeeeeecccccccccccc----ccceeeEEEEEeccccCCcCcCCcccEE
Confidence            788999999999999998899999999999999999999999987653    34556788899998764 3346678999


Q ss_pred             EEEeeeChhHHHhhhhcCC-CCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeC
Q psy2626         265 VQISVVDNPKCRQIFSNYG-ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV  343 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~-~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V  343 (355)
                      ..+.++..++|+......+ ....+.++|++...+..+.|.|||||||++.    ++|+||+|+|..|+..+.|++||||
T Consensus       147 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~c~~~~~~~~~~C~gDsGgPl~~~----~~l~Gi~S~g~~c~~~~~p~vftrv  222 (240)
T d1mzaa_         147 VTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICK----GVFHAIVSGGHECGVATKPGIYTLL  222 (240)
T ss_dssp             EEEEECCHHHHTSTTTTTTTTCCCTTEEEEECTTSCCCCCTTCTTCEEEET----TEEEEEECSSCCSSCTTCCEEEEEC
T ss_pred             EEEEEecHHHhhhhhhccCCcccccceEEeccCCCCccCccCCCCCeEEEC----CEEEEEEEeCCCCCCCCCCeEEEEE
Confidence            9999999999987654322 3456889999887777899999999999974    4899999999999988899999999


Q ss_pred             c-ccHHHHHhHhC
Q psy2626         344 T-NYIQWIADNIS  355 (355)
Q Consensus       344 ~-~y~~WI~~~i~  355 (355)
                      + +|++||+++|+
T Consensus       223 s~~y~~WI~~~i~  235 (240)
T d1mzaa_         223 TKKYQTWIKSNLV  235 (240)
T ss_dssp             CHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcc
Confidence            7 78999999985

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-48  Score=339.81  Aligned_cols=219  Identities=38%  Similarity=0.662  Sum_probs=189.1

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||++|++++|||||.|++..         .++|+||||+++||||||||+..       ...|++|....... ....
T Consensus         1 i~~G~~a~~~~~Pw~v~i~~~~---------~~~C~GtLIs~~~VLTaAhCv~~-------~~~v~~g~~~~~~~~~~~~   64 (221)
T d1lo6a_           1 LVHGGPCDKTSHPYQAALYTSG---------HLLCGGVLIHPLWVLTAAHCKKP-------NLQVFLGKHNLRQRESSQE   64 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT---------EEEEEEEEEETTEEEECGGGCCT-------TCEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCCEEEEEECC---------cEEEEEEEEeCCEEEECeecccc-------ccceeeceeeecccCccce
Confidence            7899999999999999996532         47999999999999999999864       34688998776544 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.+.++++||+|+.....+|||||+|++++.++++++|+|||...     ...+..+.++|||...... .+..|+...
T Consensus        65 ~~~~~~~~~~p~y~~~~~~~diAll~l~~~~~~~~~v~pi~l~~~~-----~~~~~~~~~~Gwg~~~~~~-~~~~l~~~~  138 (221)
T d1lo6a_          65 QSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDC-----SANTTSCHILGWGKTADGD-FPDTIQCAY  138 (221)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCCBCCCT-----TCCCCEEEEEESSCCTTSS-CCSBCEEEE
T ss_pred             eeeccccccCCCcccccccceeEEeecccccceeeeEEeccccccC-----CcccceEEEEecccccCCC-CCccceEEE
Confidence            8889999999999999999999999999999999999999999654     3567789999999887654 677899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeCcc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTN  345 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V~~  345 (355)
                      +++++.++|++.+..   .+.++++|......+...|.||+||||++..    +|+||+|||.. |+..+.|++||||++
T Consensus       139 ~~~~~~~~C~~~~~~---~~~~~~~~~~~~~~~~~~c~gd~G~Pl~~~~----~l~Gi~S~g~~~c~~~~~p~vyt~v~~  211 (221)
T d1lo6a_         139 IHLVSREECEHAYPG---QITQNMLCAGDEKYGKDSCQGDSGGPLVCGD----HLRGLVSWGNIPCGSKEKPGVYTNVCR  211 (221)
T ss_dssp             EEEECHHHHHHHSTT---TCCTTEEEEECTTTCCBCCTTTTTCEEEETT----EEEEEEEECCSSCCCSSSCEEEEEGGG
T ss_pred             EEEecHHHHHHHcCC---CccCCceeeeccccCCCCccCCCCCcEEECC----EEEEEEEEccCCCCCCCCCeEEEEHHH
Confidence            999999999998864   4556666665555578899999999999853    89999999986 888888999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++||
T Consensus       212 ~~~WI~~~ik  221 (221)
T d1lo6a_         212 YTNWIQKTIQ  221 (221)
T ss_dssp             GHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999997

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-48  Score=343.70  Aligned_cols=232  Identities=34%  Similarity=0.680  Sum_probs=195.5

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||++|.++||||+|.|.+..        ..++|+||||+++||||||||+...     ....|++|..+.... ...+
T Consensus         1 i~~G~~~~~~e~Pw~v~i~~~~--------~~~~C~GtLIs~~~VLTaAhCv~~~-----~~~~v~~g~~~~~~~~~~~~   67 (240)
T d1autc_           1 LIDGKMTRRGDSPWQVVLLDSK--------KKLACGAVLIHPSWVLTAAHCMDES-----KKLLVRLGEYDLRRWEKWEL   67 (240)
T ss_dssp             CBSCEECCTTSCTTEEEEECTT--------SCEEEEEEEEETTEEEECGGGSSSC-----SCCEEEESCCBTTCCCTTCE
T ss_pred             CCCCEECCCCCCCCEEEEEECC--------CCEEEEEEEEeCCEEEECceeccCc-----ccceeeccccccccccccce
Confidence            7899999999999999996532        3589999999999999999999752     346799998876543 5568


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccc-cccCCCceEEEEeccCCCCC-----CCCc
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRS-ELFERKTPFVAGWGSTVFRG-----PLSP  260 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~-~~~~~~~~~v~GwG~~~~~~-----~~~~  260 (355)
                      ...|+++++||.|+.....||||||||++|+.|+++|+|||||....... ....+..+.+.|||......     ....
T Consensus        68 ~~~v~~i~~~~~~~~~~~~~DiAli~L~~~v~~~~~v~picL~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~  147 (240)
T d1autc_          68 DLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTF  147 (240)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSS
T ss_pred             eeeeeccccceeeeccccccceeEEEeCCcccCCcccccceeccCcccccccccCCCeEEEEeeccccCCCcccccccce
Confidence            89999999999999999999999999999999999999999996543221 23466789999999876533     2345


Q ss_pred             cceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEE
Q psy2626         261 KLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVY  340 (355)
Q Consensus       261 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vy  340 (355)
                      .++...+++++...|...+..   ......+|........+.|.||+||||++..+++|+|+||+|+|..|+..+.|++|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~gd~G~pl~~~~~~~~~l~Gi~s~g~~c~~~~~p~vf  224 (240)
T d1autc_         148 VLNFIKIPVVPHNECSEVMSN---MVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVY  224 (240)
T ss_dssp             BCEEEEEEEECHHHHHHHCSS---CCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEE
T ss_pred             eeecceeeEEeehhhhhhccc---ccccceeeeccccccCCCcCCccCceeEEcCCCCEEEEEEEEeCCCCCCCCCCeEE
Confidence            578889999999999987754   45566677766666788999999999999999999999999999999888889999


Q ss_pred             EeCcccHHHHHhHhC
Q psy2626         341 TRVTNYIQWIADNIS  355 (355)
Q Consensus       341 t~V~~y~~WI~~~i~  355 (355)
                      |||+.|++||+++||
T Consensus       225 trv~~y~~WI~~~i~  239 (240)
T d1autc_         225 TKVSRYLDWIHGHIR  239 (240)
T ss_dssp             ECGGGTHHHHHHHHC
T ss_pred             EEHHHHHHHHHHHhC
Confidence            999999999999986

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-48  Score=337.53  Aligned_cols=222  Identities=32%  Similarity=0.559  Sum_probs=192.3

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|+.+||||+|.|++...      ...++|+||||+++||||||||+..       ...|++|....... ....
T Consensus         1 IvgG~~a~~~e~Pw~v~i~~~~~------~~~~~C~GtlI~~~~VLTaAhC~~~-------~~~v~~g~~~~~~~~~~~~   67 (224)
T d1t32a1           1 IIGGRESRPHSRPYMAYLQIQSP------AGQSRCGGFLVREDFVLTAAHCWGS-------NINVTLGAHNIQRRENTQQ   67 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEESSS------TTSCEEEEEEEETTEEEECGGGCCS-------CEEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCCEEEEEEEcC------CCCEEEEEEEEcCCEEEEeEEcccc-------cccceeeeeeeecccccee
Confidence            78999999999999999976533      2357999999999999999999864       46788888776554 4556


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      ...|++++.||+|+.....+||||++|..++.++++++|+|||....   ....+..+...|||...... ....++++.
T Consensus        68 ~~~v~~i~~~~~~~~~~~~~diaL~~l~~~~~~~~~~~pi~l~~~~~---~~~~~~~~~~~g~g~~~~~~-~~~~l~~~~  143 (224)
T d1t32a1          68 HITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQE---GLRPGTLCTVAGWGRVSMRR-GTDTLREVQ  143 (224)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTC---CCCTTCEEEEEESCCSSSSC-CCSBCEEEE
T ss_pred             eecceeEEEeecccccccccceeEEeeccccccCcccCccccccccc---cCCCCCEEEEecccccccCC-Ccceeeeee
Confidence            78899999999999999999999999999999999999999997765   45567788999999876554 677899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +.++++++|++.+..   .+.++++|+.......+.|.|||||||++.    ++|+||+|+|..|+.  .|++||||+.|
T Consensus       144 ~~~~~~~~C~~~~~~---~~~~~~~c~~~~~~~~~~c~gdsGgPl~~~----~~l~Gi~S~g~~~~~--~p~vyt~v~~y  214 (224)
T d1t32a1         144 LRVQRDRQCLRIFGS---YDPRRQICVGDRRERKAAFKGDSGGPLLCN----NVAHGIVSYGKSSGV--PPEVFTRVSSF  214 (224)
T ss_dssp             EEBCCHHHHHHHSTT---CCTTTEEEECCTTSSCBCCTTCTTCEEEET----TEEEEEEEECCTTCC--SCEEEEEGGGS
T ss_pred             eeecCHHHHHhhcCc---ccccccceeecccccccccccCcCCeEEEc----CEEEEEEEEcCCCCC--CCcEEEEHHHh
Confidence            999999999998764   567899999877777899999999999984    389999999988875  39999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++||
T Consensus       215 ~~WI~~~i~  223 (224)
T d1t32a1         215 LPWIRTTMR  223 (224)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHc
Confidence            999999996

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-48  Score=343.00  Aligned_cols=234  Identities=34%  Similarity=0.656  Sum_probs=192.9

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||++|+++||||+|.|.+..      ....+.|+||||+++||||||||+.... .......+.++....  ....+.
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~------~~~~~~C~GtLIs~~~VLTaAhCv~~~~-~~~~~~~~~~~~~~~--~~~~~~   71 (243)
T d2fpza1           1 IVGGQEAPRSKWPWQVSLRVHG------PYWMHFCGGSLIHPQWVLTAAHCVGPDV-KDLAALRVQLREQHL--YYQDQL   71 (243)
T ss_dssp             CBSCEECCTTSCTTEEEEEECS------SSCEEEEEEEEEETTEEEECHHHHCSBC-CCGGGEEEECCCSBT--TTTCCC
T ss_pred             CCCCEECCCCCCCcEEEEEECC------CcccEEEEEEEEeCCEEEECceeccCCC-CcceeEEEEeeeccc--ccccEE
Confidence            7899999999999999997643      3346789999999999999999997632 223344455554333  345678


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC--CCCccceEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG--PLSPKLRHV  265 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~--~~~~~l~~~  265 (355)
                      +.|+++++||+|+.....||||||+|++|+.++++++|+|||....   ....+....+.+||......  ..+..|+.+
T Consensus        72 ~~i~~i~~hp~~~~~~~~~diAli~L~~~~~~~~~v~~~~l~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~  148 (243)
T d2fpza1          72 LPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASE---TFPPGMPCWVTGWGDVDNDERLPPPFPLKQV  148 (243)
T ss_dssp             EEEEEEEECTTCSCTTTSCCCEEEEESSCCCCCSSSCCCBCCCTTC---CCCTTCEEEEEESSCSBTTBCCCTTCBCEEE
T ss_pred             EeeeeeeccccccccccccchhhhcccCccccceeEEEeecCchhh---ccCCCceeEEEecccccCCCcCCCCcEeEEE
Confidence            8999999999999999999999999999999999999999997664   34466788999999876544  345678999


Q ss_pred             EEeeeChhHHHhhhhcCC------CCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcE
Q psy2626         266 QISVVDNPKCRQIFSNYG------ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV  339 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~------~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~v  339 (355)
                      .+++++...|+..+....      ..+...++|++.  .+.+.|.|||||||++..+++|+|+||+|+|..|+..+.|++
T Consensus       149 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gdsGgpl~~~~~~~~~L~Gi~s~~~~~~~~~~p~v  226 (243)
T d2fpza1         149 KVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGN--TRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGI  226 (243)
T ss_dssp             EEEEECHHHHHHHHHTTBCSCTTSCSSCTTEEEECC--SSSBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEE
T ss_pred             EEeecCHHHhhhhhhcccccCCccceeeeeeEecCC--CCCCCccCCCCCeEEEeeCCEEEEEEEEEECCCCCCCCCCEE
Confidence            999999999998875321      234455677653  367899999999999999999999999999999988889999


Q ss_pred             EEeCcccHHHHHhHhC
Q psy2626         340 YTRVTNYIQWIADNIS  355 (355)
Q Consensus       340 yt~V~~y~~WI~~~i~  355 (355)
                      ||||++|++||+++|+
T Consensus       227 ~t~v~~y~~WI~~~i~  242 (243)
T d2fpza1         227 YTRVTYYLDWIHHYVP  242 (243)
T ss_dssp             EEEGGGGHHHHTTTSC
T ss_pred             EEEHHHHHHHHHHHhC
Confidence            9999999999999986

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-48  Score=342.49  Aligned_cols=233  Identities=37%  Similarity=0.615  Sum_probs=192.6

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||++|+++||||||+|..           .++|+||||+++||||||||+... ........|..|..+... ...+.
T Consensus         1 i~gG~~~~~g~~Pw~v~i~~-----------~~~C~GtLIs~~~VLTaAhCv~~~-~~~~~~~~v~~~~~~~~~-~~~~~   67 (242)
T d1q3xa1           1 IYGGQKAKPGDFPWQVLILG-----------GTTAAGALLYDNWVLTAAHAVYEQ-KHDASALDIRMGTLKRLS-PHYTQ   67 (242)
T ss_dssp             CBSCEECCTTSSTTEEEECS-----------SSSEEEEEETTTEEEECHHHHHHH-HTTTCCCEEEESCSBTTC-SCSEE
T ss_pred             CCCCEECCCCCcCcEEEEcC-----------CCEEEEEEEcCCEEEEChhhccCC-CCCcceEEEEeeeeeecc-ccccc
Confidence            79999999999999999952           257999999999999999999652 123345678888766543 45677


Q ss_pred             EEEeeeEeCCCCCCCC-CCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         188 IEIERPIIHEQYTSAR-KLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~-~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      +.+.++++||+|+... ..||||||||++|+.|++++.|||||..... .....+......||+....+. .+..++.+.
T Consensus        68 ~~v~~i~~hp~y~~~~~~~~DiAll~L~~~~~~~~~v~pic~~~~~~~-~~~~~~~~~~~~g~~~~~~~~-~~~~l~~~~  145 (242)
T d1q3xa1          68 AWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAE-SFMRTDDIGTASGWGLTQRGF-LARNLMYVD  145 (242)
T ss_dssp             EEEEEEEECTTCCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGG-GGSSTTCEEEEEESSCCTTSS-CCSBCEEEE
T ss_pred             cceeeeEEeeccccccccCccccccccCCCccccccEEEEeccccccc-cccccceeeeeeeccccccCc-cccceeeee
Confidence            8899999999998765 5699999999999999999999999866532 123355667788888776554 577899999


Q ss_pred             EeeeChhHHHhhhhcC---CCCCCCCeEEecccCCCCCCCcCCCCCcceeeeC--CeEEEEEEEEeCCC-CCCCCCCcEE
Q psy2626         267 ISVVDNPKCRQIFSNY---GATINENILCAGVLSGGKDSCGGDSGGPLMYPLD--TKYYIIGVVSYGKK-CAEVGFPGVY  340 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~---~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~--~~~~lvGI~S~g~~-C~~~~~p~vy  340 (355)
                      +.+++.+.|++.+...   ...+...++|++......+.|.||+||||++..+  ++|+|+||+|||.. |+..+.|+||
T Consensus       146 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgpl~~~~~~~~~~~l~Gi~S~g~~~c~~~~~p~vf  225 (242)
T d1q3xa1         146 IPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVY  225 (242)
T ss_dssp             EEEECHHHHHHHTSSTTSCTTCSCTTEEEECCSSCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEECCSSTTCTTCCEEE
T ss_pred             ccccCHHHHHhhhhcccccCceeccceeeeeccCCCccccccccccceEEeeCCCCeEEEEEEEEeCCCCCCCCCCCEEE
Confidence            9999999999888643   2456778899987777789999999999998654  78999999999976 9888899999


Q ss_pred             EeCcccHHHHHhHhC
Q psy2626         341 TRVTNYIQWIADNIS  355 (355)
Q Consensus       341 t~V~~y~~WI~~~i~  355 (355)
                      |||++|++||+++|+
T Consensus       226 t~v~~~~~WI~~~v~  240 (242)
T d1q3xa1         226 TKVINYIPWIENIIS  240 (242)
T ss_dssp             EEGGGGHHHHHHHHH
T ss_pred             EEHHHhHHHHHHHHH
Confidence            999999999999984

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-48  Score=344.47  Aligned_cols=230  Identities=30%  Similarity=0.545  Sum_probs=191.6

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCC--CcCceEEEeccccccCCCCc
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTG--EYEPYIVHVGSIDLEDTSSG  185 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~--~~~~~~v~~G~~~~~~~~~~  185 (355)
                      |+||.+|.++||||||.|.+           .+.|+||||+++||||||||+......  ....+.|++|.++.......
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~-----------~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~   69 (240)
T d2qy0b1           1 IIGGQKAKMGNFPWQVFTNI-----------HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKL   69 (240)
T ss_dssp             CBSCEECCTTSSTTEEEEES-----------SSEEEEEEETTTEEEECHHHHSCSSCCC----CCEEEESCSBHHHHHHH
T ss_pred             CCCCEECCCCCcCCEEEECC-----------CceEEEEEEcCCEEEEChHhCCCcccccccccceeeeeeeccccccCCc
Confidence            78999999999999999853           257999999999999999999763221  22346899998876544445


Q ss_pred             EEEEEeeeEeCCCCCCCC---CCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccc
Q psy2626         186 VSIEIERPIIHEQYTSAR---KLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKL  262 (355)
Q Consensus       186 ~~~~v~~i~~hp~y~~~~---~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l  262 (355)
                      +.+.|+++++||+|+...   ..+|||||+|++|+.++++++|||||....   ....+..+++.|||.....  .+..+
T Consensus        70 ~~~~v~~i~vhp~y~~~~~~~~~~DiAll~L~~pi~~~~~v~pi~l~~~~~---~~~~~~~~~~~g~g~~~~~--~~~~~  144 (240)
T d2qy0b1          70 GNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDT---FYDLGLMGYVSGFGVMEEK--IAHDL  144 (240)
T ss_dssp             CCCCEEEEEECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGG---GGCTTCEEEEEECCCCSSS--CCSBC
T ss_pred             ceEEEEEEEeccccccccccccCCCceEEecCCccccccccceEEeccccc---ccccCceeeeccccccccc--ccccc
Confidence            567899999999998753   458999999999999999999999997654   3446778899999987643  46778


Q ss_pred             eEEEEeeeChhHHHhhhhcCC--CCCCCCeEEecccCCCCCCCcCCCCCcceeeeC--CeEEEEEEEEeCCCCCCCCCCc
Q psy2626         263 RHVQISVVDNPKCRQIFSNYG--ATINENILCAGVLSGGKDSCGGDSGGPLMYPLD--TKYYIIGVVSYGKKCAEVGFPG  338 (355)
Q Consensus       263 ~~~~~~~~~~~~C~~~~~~~~--~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~--~~~~lvGI~S~g~~C~~~~~p~  338 (355)
                      +...+.+++...|+..+....  ..+.+.++|+.......+.|.||||+||++..+  ++|+|+||+|||..|+.  .|+
T Consensus       145 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gdsG~pl~~~~~~~~~~~l~Gi~S~g~~c~~--~p~  222 (240)
T d2qy0b1         145 RFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYG  222 (240)
T ss_dssp             EEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSS--SCE
T ss_pred             eEEEEEEcCHHHHHHHhhccccCCceecceEEeccCCccceeeccccccceEEEeCCCCeEEEEEEEEECCCCCC--CCe
Confidence            889999999999998876543  346789999988777789999999999999765  67999999999999975  389


Q ss_pred             EEEeCcccHHHHHhHhC
Q psy2626         339 VYTRVTNYIQWIADNIS  355 (355)
Q Consensus       339 vyt~V~~y~~WI~~~i~  355 (355)
                      |||||++|++||+++||
T Consensus       223 vft~v~~~~~WI~~~i~  239 (240)
T d2qy0b1         223 FYTKVLNYVDWIKKEME  239 (240)
T ss_dssp             EEEEGGGGHHHHHHHTT
T ss_pred             EEEEHHHHHHHHHHHhc
Confidence            99999999999999986

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-48  Score=343.26  Aligned_cols=233  Identities=33%  Similarity=0.688  Sum_probs=191.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||++|+.+||||+|+|.+..         .++|+||||+++||||||||+.+..... ... ..+...........+.
T Consensus         1 i~gG~~~~~~e~Pw~v~I~~~~---------~~~C~GtLIs~~~VLTaAhCv~~~~~~~-~~~-~~~~~~~~~~~~~~~~   69 (255)
T d1z8ga1           1 IVGGRDTSLGRWPWQVSLRYDG---------AHLCGGSLLSGDWVLTAAHCFPERNRVL-SRW-RVFAGAVAQASPHGLQ   69 (255)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT---------EEEEEEEESSSSEEEECGGGCCGGGCCG-GGE-EEEESCSBTTCTTSEE
T ss_pred             CCCCEECCCCCcCcEEEEEECC---------cEEEEEEEEeCCEEEECceecCCCCCcc-cee-eEeeeeecccCCccEE
Confidence            7899999999999999997642         4789999999999999999997632211 122 2222222223356778


Q ss_pred             EEEeeeEeCCC------CCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCcc
Q psy2626         188 IEIERPIIHEQ------YTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK  261 (355)
Q Consensus       188 ~~v~~i~~hp~------y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~  261 (355)
                      +.+.+++.||.      |+.....||||||||++++.|+++++|+||+....   ....+..+.+.||+.+...+.....
T Consensus        70 ~~v~~~~~h~~~~~~~~~~~~~~~~DiAll~L~~~v~~~~~~~p~~l~~~~~---~~~~~~~~~~~G~~~~~~~~~~~~~  146 (255)
T d1z8ga1          70 LGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQ---ALVDGKICTVTGWGNTQYYGQQAGV  146 (255)
T ss_dssp             ECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTC---CCCTTCEEEEEESSBSSTTSCBCSB
T ss_pred             EEEEEEEEEeeeccccccccCCccccEEEEecCCccccCcccccceecccCc---ccCCCcEEEeeccccccCCCcccce
Confidence            88999999998      55566779999999999999999999999997764   3456788899999988777767788


Q ss_pred             ceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeee----CCeEEEEEEEEeCCCCCCCCCC
Q psy2626         262 LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL----DTKYYIIGVVSYGKKCAEVGFP  337 (355)
Q Consensus       262 l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~----~~~~~lvGI~S~g~~C~~~~~p  337 (355)
                      ++...+++++.+.|+..+.. ...+.+.++|+....++.+.|.||+||||++..    .++|+|+||+|||.+|+..+.|
T Consensus       147 l~~~~~~~~~~~~C~~~~~~-~~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~~~~~~~~~~~l~Gi~S~g~~c~~~~~p  225 (255)
T d1z8ga1         147 LQEARVPIISNDVCNGADFY-GNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKP  225 (255)
T ss_dssp             CEEEEEEEECHHHHTSTTTT-TTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCC
T ss_pred             eEEEEEEEeCHHHhhhhhcc-CccccCcceEEecCCCCcccccCccccceEEecCCCCCCcEEEEEEEEECCCCCCCCCC
Confidence            99999999999999876643 246678888887777678899999999999875    3789999999999999998899


Q ss_pred             cEEEeCcccHHHHHhHhC
Q psy2626         338 GVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       338 ~vyt~V~~y~~WI~~~i~  355 (355)
                      ++||||+.|++||+++|+
T Consensus       226 ~vft~V~~y~~WI~~~i~  243 (255)
T d1z8ga1         226 GVYTKVSDFREWIFQAIK  243 (255)
T ss_dssp             EEEEEGGGGHHHHHHHHH
T ss_pred             EEEEEHHHhHHHHHHHHH
Confidence            999999999999999984

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=7.7e-48  Score=335.28  Aligned_cols=220  Identities=34%  Similarity=0.612  Sum_probs=184.9

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||++++++||||+|+|..          ..++|+||||+++||||||||+....     ...+..+.... .......
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~----------~~~~C~GtLIs~~~VLTAAhCv~~~~-----~~~~~~~~~~~-~~~~~~~   64 (222)
T d1hj8a_           1 IVGGYECKAYSQPHQVSLNS----------GYHFCGGSLVNENWVVSAAHCYKSRV-----EVRLGEHNIKV-TEGSEQF   64 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEES----------SSEEEEEEEEETTEEEECGGGCCSSC-----EEEESCSBTTS-CCSCCEE
T ss_pred             CCCCEECCCCCCCeEEEEEC----------CCEEEEEEEeeCCEEEeCceeccccc-----Ccceeeccccc-cCCcccc
Confidence            78999999999999999931          14789999999999999999997521     12222222222 2234456


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI  267 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~  267 (355)
                      ..+.+++.||.|......+|||||+|++|+.+++.++|||||...     ...+..+++.|||.+.........|+...+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~diALl~l~~~v~~~~~~~picl~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~  139 (222)
T d1hj8a_          65 ISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSC-----APAGTMCTVSGWGNTMSSTADSNKLQCLNI  139 (222)
T ss_dssp             EEEEEEEECTTCBTTTTBSCCEEEEESSCCCCSSSCCCCBCCSSC-----CCTTCEEEEEESSCCCCSSCCTTBCEEEEE
T ss_pred             ccceEEEecccccccccCCcEEEEecccceeeeceeEEEECCCcC-----CCCCceEEEEeccccccccccccccEEEEE
Confidence            677788999999998889999999999999999999999999654     356778899999998777667788999999


Q ss_pred             eeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccH
Q psy2626         268 SVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI  347 (355)
Q Consensus       268 ~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~  347 (355)
                      .+++.++|+..+..   .+.+.++|++...++.+.|.|||||||++.    ++|+||+|+|..|+..+.|++||||..|+
T Consensus       140 ~~~~~~~C~~~~~~---~~~~~~~C~~~~~~~~~~c~gdsGgPl~~~----~~l~Gi~S~g~~~~~~~~p~v~t~v~~y~  212 (222)
T d1hj8a_         140 PILSYSDCNNSYPG---MITNAMFCAGYLEGGKDSCQGDSGGPVVCN----GELQGVVSWGYGCAEPGNPGVYAKVCIFN  212 (222)
T ss_dssp             EBCCHHHHHHHSTT---CCCTTEEEESCTTSSCBCCTTCTTCEEEET----TEEEEEEEECSSSSCTTCCEEEEEGGGGH
T ss_pred             EEeCHHHHhhhccc---ccccceEEEccCCCCcccccCCcccEEEEC----CEEEEEEEEecCCCCCCCCEEEEEHHHHH
Confidence            99999999988764   678999999887767889999999999974    47999999999999888999999999999


Q ss_pred             HHHHhHhC
Q psy2626         348 QWIADNIS  355 (355)
Q Consensus       348 ~WI~~~i~  355 (355)
                      +||+++|+
T Consensus       213 ~WI~~~i~  220 (222)
T d1hj8a_         213 DWLTSTMA  220 (222)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999985

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-47  Score=334.12  Aligned_cols=223  Identities=35%  Similarity=0.620  Sum_probs=190.4

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||++|..+||||+|.|.+...      ...++|+||||+++||||||||+..       ...+++|....... ...+
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~------~~~~~C~GtLIs~~~VLTaAhC~~~-------~~~~~~~~~~~~~~~~~~~   67 (224)
T d1eufa_           1 IIGGHEAKPHSRPYMAFLLFKTS------GKSHICGGFLVREDFVLTAAHCLGS-------SINVTLGAHNIMERERTQQ   67 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESS------SSEEEEEEEEEETTEEEECGGGCCE-------EEEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCCEEEEEEEcC------CCcEEEEEEEEcCCEEEeeceeccc-------ccceeeeeeeecccCCCcE
Confidence            78999999999999999987643      2468999999999999999999864       34567777665443 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|+++++||+|+.....||||||||++|+.|++.+.|+||+....   ....+..+.+.|||.+.........++...
T Consensus        68 ~~~V~~i~~hp~~~~~~~~~DiAll~L~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~  144 (224)
T d1eufa_          68 VIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLA---EVKPGMMCSVAGWGRLGVNMPSTDKLQEVD  144 (224)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTC---CCCTTCEEEEEESCBSSTTCCBCSBCEEEE
T ss_pred             EEEEEEEEECCccccccccccceeeeccceeEEeeeEeeeeeecccc---cccCCceEEEecccceeccccccccceeee
Confidence            89999999999999999999999999999999999999999997664   456777889999999887776778899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +.++++++|...+..   .....++|........+.|.||+||||++.    ++|+||+|+|..|+  +.|.+||||+.|
T Consensus       145 ~~~~~~~~C~~~~~~---~~~~~~~~~~~~~~~~~~c~~dsGgpl~~~----~~l~Gi~s~g~~~~--~~p~vft~V~~y  215 (224)
T d1eufa_         145 LEVQSEEKCIARFKN---YIPFTQICAGDPSKRKNSFSGDSGGPLVCN----GVAQGIVSYGRNDG--TTPDVYTRISSF  215 (224)
T ss_dssp             EEBCCTHHHHTTCTT---CCTTTEEEESCTTSCCBCCTTCTTCEEEET----TEEEEEEEECCTTC--CSCEEEEEGGGT
T ss_pred             eccCCHHHHHHHhcc---ccccceeeeeccccccccccCCCCCeEEEc----CEEEEEEEEcCCCC--CCCeEEEEHHHH
Confidence            999999999987654   345566666655557889999999999984    48999999998886  469999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++||
T Consensus       216 ~~WI~~~ik  224 (224)
T d1eufa_         216 LSWIHSTMR  224 (224)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhC
Confidence            999999997

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.6e-48  Score=335.31  Aligned_cols=220  Identities=30%  Similarity=0.567  Sum_probs=183.2

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||+++.++||||+|.|..          ..++|+||||+++||||||||+.....     ..+... ...........
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~----------~~~~C~GtLIs~~~VLTaAhCv~~~~~-----~~~~~~-~~~~~~~~~~~   64 (223)
T d1j16a_           1 IVGGYTCQENSVPYQVSLNS----------GYHFCGGSLINDQWVVSAAHCYKSRIQ-----VRLGEH-NINVLEGNEQF   64 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEES----------SSEEEEEEEEETTEEEECGGGCCSSCE-----EEESCS-BTTSCCSCCEE
T ss_pred             CCCCEECCCCCCCcEEEEeC----------CCEEEEEEEEcCCEEEeCHHHCCCcCC-----ceeeee-eecccccccee
Confidence            68999999999999999942          147899999999999999999976211     111111 11112244567


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC-CCCccceEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRHVQ  266 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~  266 (355)
                      ..+.++++||+|+.....+|||||+|++++.|+++++|||||...     ...+..++++|||.+...+ ..+..|+...
T Consensus        65 ~~~~~~~~hp~y~~~~~~~diAll~L~~~v~~~~~~~picL~~~~-----~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~  139 (223)
T d1j16a_          65 VNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSC-----APAGTQCLISGWGNTLSSGVNEPDLLQCLD  139 (223)
T ss_dssp             EEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCSSC-----CCTTCEEEEEESSCCCSSSCCCCSBCEEEE
T ss_pred             eeeeeEEecCCCCccccceeEEEEEecCccccceeEEEEecCCcC-----CCCCCEEEEEeeeeeeCCCccCcceeeEEE
Confidence            889999999999998888999999999999999999999999654     3567889999999876554 3566799999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +.+++.+.|+..+.   ..+.++++|++...++.+.|.||+||||++.    ++|+||+|+|..|+..+.|++||||+.|
T Consensus       140 ~~~~~~~~C~~~~~---~~~~~~~~C~~~~~~~~~~c~gd~g~pl~~~----~~L~Gi~s~~~~~~~~~~p~vft~v~~~  212 (223)
T d1j16a_         140 APLLPQADCEASSS---FIITDNMVCVGFLEGGKDACQGDSGGPVVCN----GELQGIVSWGYGCALPDNPGVYTKVCNY  212 (223)
T ss_dssp             EEEECHHHHHSSSS---CCCCTTEEEESCTTCSCBCCTTCTTCEEEET----TEEEEEEEECSSSSCTTCCEEEEEGGGG
T ss_pred             EEEEEhhHhhcccc---ceeCCCceEEecCCCCCcccCCccCCcEEEe----eEEEEEEEEccCCCCCCCCEEEEEhHHh
Confidence            99999999997654   3678899999887777889999999999984    4899999999999988899999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       213 ~~WI~~~i~  221 (223)
T d1j16a_         213 VDWIQDTIA  221 (223)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999984

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=100.00  E-value=1.1e-47  Score=333.87  Aligned_cols=221  Identities=33%  Similarity=0.619  Sum_probs=187.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||++|.++||||+|.|++..         .++|+||||+++||||||||+....  ......+..+....  ....+.
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~---------~~~C~GtLIs~~~VLTaAhCv~~~~--~~~~~~~~~~~~~~--~~~~~~   67 (222)
T d1eq9a_           1 IVGGKDAPVGKYPYQVSLRLSG---------SHRCGASILDNNNVLTAAHCVDGLS--NLNRLKVHVGTNYL--SESGDV   67 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT---------EEEEEEEECSSSEEEECHHHHTTCS--CGGGEEEEESCSBT--TSCCEE
T ss_pred             CCCCEECCCCCCCcEEEEEECC---------CEEEEEEEEeCCEEEECceeccccc--cccceeeecceecc--ccCcce
Confidence            7899999999999999997643         4889999999999999999997622  22344444444333  245678


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI  267 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~  267 (355)
                      +.|+++++||+|+.....+|||||+|++++.++++++|+|||....    ......++++||+.+...+..+..++...+
T Consensus        68 ~~v~~~~~h~~y~~~~~~~diAll~L~~~~~~~~~v~pi~l~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  143 (222)
T d1eq9a_          68 YDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDE----DLESNPCTLTGWGSTRLGGNTPNALQEIEL  143 (222)
T ss_dssp             EEEEEEEECTTCBTTTTBCCCEEEEESSCCCCBTTBCCCEECSCCT----TCTTSEEEEEECCCSSTTCCCCSBCEEEEE
T ss_pred             eeeeeEEEeecccccccccceehhhccCCccccccccccccccccc----ccccceeEEeeeeeecCCCCCCccceEEEE
Confidence            8999999999999999999999999999999999999999997653    345677899999998877778889999999


Q ss_pred             eeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccH
Q psy2626         268 SVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI  347 (355)
Q Consensus       268 ~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~  347 (355)
                      ..++...|...+.    .+.+.++|++... ..+.|.+|+||||++.    |+|+||+|+|..|+. +.|++||||+.|+
T Consensus       144 ~~~~~~~c~~~~~----~~~~~~~c~~~~~-~~~~c~~d~G~pl~~~----~~L~GI~s~~~~c~~-~~p~vyt~v~~y~  213 (222)
T d1eq9a_         144 IVHPQKQCERDQW----RVIDSHICTLTKR-GEGACHGDSGGPLVAN----GAQIGIVSFGSPCAL-GEPDVYTRVSSFV  213 (222)
T ss_dssp             EEECHHHHHHHSS----SCCTTEEEECCCT-TCBCCTTCTTCEEEET----TEEEEEEEECSTTTS-SSCEEEEEGGGGH
T ss_pred             EEechHHhccccc----cccCcceEeccCC-CCCccccCCcCCEEEc----CEEEEEEEECCCCCC-CCCcEEEEHHHHH
Confidence            9999999988764    4678899998755 6789999999999973    589999999999975 5699999999999


Q ss_pred             HHHHhHhC
Q psy2626         348 QWIADNIS  355 (355)
Q Consensus       348 ~WI~~~i~  355 (355)
                      +||+++|+
T Consensus       214 ~WI~~~i~  221 (222)
T d1eq9a_         214 SWINANLK  221 (222)
T ss_dssp             HHHHHTSC
T ss_pred             HHHHHHhc
Confidence            99999986

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-47  Score=335.76  Aligned_cols=224  Identities=29%  Similarity=0.580  Sum_probs=184.5

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC---CC
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT---SS  184 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~---~~  184 (355)
                      |+||.++..+ |||||+|+++.         .|+|+||||+++||||||||+..   .....+.|++|.++....   ..
T Consensus         1 ~~~g~~~~~~-~~w~vsi~~~~---------~~~C~GtLIs~~~VLTaAhCv~~---~~~~~~~v~~g~~~~~~~~~~~~   67 (234)
T d1si5h_           1 VVNGIPTRTN-IGWMVSLRYRN---------KHICGGSLIKESWVLTARQCFPS---RDLKDYEAWLGIHDVHGRGDEKC   67 (234)
T ss_dssp             CBSCEECSSC-CTTEEEEEESS---------SEEEEEEEEETTEEEEEGGGCSS---SCGGGEEEEESCSBSSCSTTTTT
T ss_pred             CCCCEeCCCC-cCeEEEEEECC---------cEEEEEEEEeCCEEEECcCccCC---CCCccceEEEEeeccccccccee
Confidence            6899999775 99999998753         47899999999999999999975   234678899998776543   33


Q ss_pred             cEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceE
Q psy2626         185 GVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRH  264 (355)
Q Consensus       185 ~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~  264 (355)
                      .+.+.+..+..||.|      ||||||||++|+.++++++|||||....   .......+.+.||+...... .+..|+.
T Consensus        68 ~~~~~~~~~~~~~~~------~DIAll~L~~~v~~~~~v~picl~~~~~---~~~~~~~~~~~g~~~~~~~~-~~~~l~~  137 (234)
T d1si5h_          68 KQVLNVSQLVYGPEG------SDLVLMKLARPAVLDDFVSTIDLPNYGS---TIPEKTSCSVYGWGYTGLIN-YDGLLRV  137 (234)
T ss_dssp             CEEEEEEEEEECSST------TCEEEEEESSCCCCSSSCCCCBCCCTTC---CCCTTCEEEEEESSCCCCSS-CCCBCEE
T ss_pred             EEEEeeccccCCCcc------cceEEEeeccCccccccccccccccccc---cCCcceeEEEeccccccccc-ccceeEE
Confidence            456677777777766      8999999999999999999999997664   34456667777887665444 5678999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCc
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT  344 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~  344 (355)
                      +.+.+++.+.|...+.. ...+.++++|++....+.+.|.||+||||++..+++|+|+||+|+|..|+..+.|++||||+
T Consensus       138 ~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~s~g~~c~~~~~p~vyt~i~  216 (234)
T d1si5h_         138 AHLYIMGNEKCSQHHRG-KVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVA  216 (234)
T ss_dssp             EEEEEECGGGTCC--------CCTTEEEEECSSSCCBCCTTCTTCEEEEECSSSEEEEEEECSCSCSSCTTCCEEEEEGG
T ss_pred             EEeeccchhHhhhhhcc-ccccCCccEEEccCCcCCCCCcCccccceEEecCCeEEEEEEEEeCCCCCCCCCCEEEEEHH
Confidence            99999999999887643 34678899999877767899999999999999999999999999999998888999999999


Q ss_pred             ccHHHHHhHhC
Q psy2626         345 NYIQWIADNIS  355 (355)
Q Consensus       345 ~y~~WI~~~i~  355 (355)
                      .|++||+++|+
T Consensus       217 ~~~~WI~~~i~  227 (234)
T d1si5h_         217 YYAKWIHKIIL  227 (234)
T ss_dssp             GGHHHHHHHHS
T ss_pred             HHHHHHHHHhh
Confidence            99999999985

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-47  Score=338.96  Aligned_cols=237  Identities=35%  Similarity=0.647  Sum_probs=194.9

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||++|+++||||+|.|++..         .++|+||||+++||||||||+...  .......+.++..+.... ....
T Consensus         1 iigG~~a~~~~~Pw~v~i~~~~---------~~~C~GtLIs~~~VLTAAhCv~~~--~~~~~~~v~~~~~~~~~~~~~~~   69 (254)
T d2bz6h1           1 IVGGKVCPKGECPWQVLLLVNG---------AQLCGGTLINTIWVVSAAHCFDKI--KNWRNLIAVLGEHDLSEHDGDEQ   69 (254)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT---------EEEEEEEECSSSEEEECGGGGTTC--SCGGGEEEEESCCBTTCCCSCCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC---------CEEEEEEEeCCCEEEECcccccCC--CCcccceeeccceeeccccccce
Confidence            7899999999999999997643         478999999999999999999762  334567778887776543 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      ...+..++.|+.|......+|||||||++|+.++++++|+|||..............+.+.|||.+..........+...
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~DiAll~L~~~v~~~~~i~picl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (254)
T d2bz6h1          70 SRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLN  149 (254)
T ss_dssp             EEEEEEEEEETTCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEE
T ss_pred             eeeeeeeeecccccccccccceeEEEecCcccccceEeeeecCccccccccccCCceEEEeccCccCCCCcccccceeee
Confidence            77889999999999999999999999999999999999999997543333445667789999999887765666666667


Q ss_pred             EeeeChhHHHhhhhcC--CCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCc
Q psy2626         267 ISVVDNPKCRQIFSNY--GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT  344 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~--~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~  344 (355)
                      ..+.....+.......  .......++|+....+....|.|||||||++..+++|+|+||+|||..|+..+.|++||||+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdsGgPl~~~~~~~~~lvGi~S~g~~c~~~~~p~vytrv~  229 (254)
T d2bz6h1         150 VPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVS  229 (254)
T ss_dssp             EEEECHHHHHHHSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGG
T ss_pred             ecccchhhhhhhhhcccccccccccceeeeccCCCcccccCccccceEEccCCeEEEEEEEEeCCCCCCCCCCEEEEEHH
Confidence            7777666554443221  23456677787766667889999999999999999999999999999999888999999999


Q ss_pred             ccHHHHHhHhC
Q psy2626         345 NYIQWIADNIS  355 (355)
Q Consensus       345 ~y~~WI~~~i~  355 (355)
                      .|++||+++|+
T Consensus       230 ~~~~WI~~~i~  240 (254)
T d2bz6h1         230 QYIEWLQKLMR  240 (254)
T ss_dssp             GGHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999999985

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-49  Score=342.73  Aligned_cols=224  Identities=33%  Similarity=0.551  Sum_probs=191.2

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||++|..+||||||+|.+...      ...++|+||||+++||||||||+..       ...|++|....... ...+
T Consensus         1 iigG~~a~~~~~Pw~v~l~~~~~------~~~~~C~GtLIs~~~VLTaAhC~~~-------~~~v~~g~~~~~~~~~~~~   67 (227)
T d1fq3a_           1 IIGGHEAKPHSRPYMAYLMIWDQ------KSLKRCGGFLIQDDFVLTAAHCWGS-------SINVTLGAHNIKEQEPTQQ   67 (227)
T ss_dssp             CBTCBCCCTTSCTTEEECCEEET------TEEECCEEEEEETTEEEECGGGCCS-------EEEEEESCSBTTTTCTTCE
T ss_pred             CCCCEECCCCCCCCEEEEEEEcC------CCcEEEEEEEEeCCEEEeCEeeccc-------cccceeccccccccccccE
Confidence            78999999999999999976532      2357899999999999999999964       46688888776544 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      .+.|.+++.||.|+.....||||||+|++|+.|+++++|+|||....   ....+..+.++|||.+...+.....++++.
T Consensus        68 ~~~v~~i~~~~~~~~~~~~~DiAll~L~~~i~~~~~v~~~~l~~~~~---~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~  144 (227)
T d1fq3a_          68 FIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKA---QVKPGQTCSVAGWGQTAPLGKHSHTLQEVK  144 (227)
T ss_dssp             EEEEEEECCCTTCCTTTTTTCCEEEEESSCCCCCSSCCCCCCCCSSC---CCCTTCEEECCCSCCSTTTSCCCSBCCBCE
T ss_pred             EEEEEEEEecccCCCCCCCcchhhhhcccccccceeEEEEeeccccc---ccCCCCEEEEEeeccccCcccccccceEEE
Confidence            88999999999999999999999999999999999999999997654   445677889999999877776788899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +.+++++.|++.+...  .....++|........+.|.||+||||++.    ++|+||+|+|..|+.  .|.+||||++|
T Consensus       145 ~~~~~~~~C~~~~~~~--~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~----~~l~GI~s~g~~~~~--~p~vyt~v~~y  216 (227)
T d1fq3a_         145 MTVQEDRKCESDLRHY--YDSTIELCVGDPEIKKTSFKGDSGGPLVCN----KVAQGIVSYGRNNGM--PPRACTKVSSF  216 (227)
T ss_dssp             EECCCHHHHTTTCTTT--CCTTTEECCSCTTSSCBCCTTCTTCBCBSS----SSCCCEECCCCTTSC--SCCCEECHHHH
T ss_pred             EEEEcHHHhhhhhccc--ccccceeeeeccccccccccCCCCceEEEe----CEEEEEEEEcCCCCC--CCcEEEEHHHH
Confidence            9999999999887642  344556666655667889999999999984    589999999998874  48999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       217 ~~WI~~~i~  225 (227)
T d1fq3a_         217 VHWIKKTMK  225 (227)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHH
Confidence            999999986

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=9.3e-48  Score=335.33  Aligned_cols=223  Identities=34%  Similarity=0.586  Sum_probs=192.4

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|.++||||+|+|.+...     ....++|+||||+++||||||||+..       ...|++|....... ...+
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~-----~~~~~~C~GtLIs~~~VLTaA~C~~~-------~~~v~~g~~~~~~~~~~~~   68 (224)
T d3rp2a_           1 IIGGVESIPHSRPYMAHLDIVTE-----KGLRVICGGFLISRQFVLTAAHCKGR-------EITVILGAHDVRKRESTQQ   68 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEECT-----TSCEEEEEEEESSSSEEEECGGGCCS-------EEEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECcCCCCCCEEEEEEEeC-----CCCeEEEEEEEEcCCeeEeccccccc-------ccEEEeccccccCccccce
Confidence            78999999999999999988643     23468999999999999999999853       46799998776544 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      ...|+++++||+|+.....+|||||+|++|+.|+++++|+|||....   ....+..+.+.|||.....+.....|+++.
T Consensus        69 ~~~v~~~~~~~~~~~~~~~~diall~L~~~v~~~~~~~p~~l~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~  145 (224)
T d3rp2a_          69 KIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSD---FIHPGAMCWAAGWGKTGVRDPTSYTLREVE  145 (224)
T ss_dssp             EEEEEEEEECTTCCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTC---CCCTTCEEEEEESSEEETTEEECSBCEEEE
T ss_pred             eeeEEEEEecccccccccccceeeeeecceeEeccccceEEeccccc---ccCCCcEEEEeeeeeeecCCCccceeeEEE
Confidence            88999999999999999999999999999999999999999997654   445677889999998877665677899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.+.|...+.    .....++|+.........|.||+||||++.    ++|+||+|||..|.  +.|+|||||++|
T Consensus       146 ~~~~~~~~C~~~~~----~~~~~~~~~~~~~~~~~~c~~d~G~Pl~~~----~~l~Gi~S~g~~~~--~~p~vyt~v~~~  215 (224)
T d3rp2a_         146 LRIMDEKACVDYRY----YEYKFQVCVGSPTTLRAAFMGDSGGPLLCA----GVAHGIVSYGHPDA--KPPAIFTRVSTY  215 (224)
T ss_dssp             EEEECGGGTTTTTC----CCTTTEEEECCTTSCCBCCTTTTTCEEEET----TEEEEEEEECCTTC--CSCEEEEEHHHH
T ss_pred             EEccCHHHhhhccc----ccccceeeeccCcccccCcCCCcCCeEEEc----CEEEEEEEECCCCC--CCCeEEEEHHHH
Confidence            99999999987764    356778898777767889999999999983    58999999998775  359999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       216 ~~WI~~vi~  224 (224)
T d3rp2a_         216 VPWINAVIN  224 (224)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999985

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-47  Score=332.73  Aligned_cols=219  Identities=32%  Similarity=0.638  Sum_probs=178.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEecccccc-CCCCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLE-DTSSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~-~~~~~~  186 (355)
                      |+||++|++++|||||.|++..         .++|+||||+++||||||||+...       ..+........ ......
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~~---------~~~C~GtLIs~~~VLTaAhC~~~~-------~~~~~~~~~~~~~~~~~~   64 (225)
T d1npma_           1 ILEGRECIPHSQPWQAALFQGE---------RLICGGVLVGDRWVLTAAHCKKQK-------YSVRLGDHSLQSRDQPEQ   64 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT---------EEEEEEEEEETTEEEECGGGCCSS-------CEEEESCSBTTC--CCCE
T ss_pred             CCCCEECCCCCCCCEEEEEECC---------cEEEEEEEEcCCEEEEchHhCccc-------cccccccccccccCCCcc
Confidence            7899999999999999996532         478999999999999999999752       12333333222 224445


Q ss_pred             EEEEeeeEeCCCC---CCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCC-CCCCccc
Q psy2626         187 SIEIERPIIHEQY---TSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFR-GPLSPKL  262 (355)
Q Consensus       187 ~~~v~~i~~hp~y---~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~-~~~~~~l  262 (355)
                      ...+..+..||.|   +.....||||||+|++|+.+++.++|+|||....     .....++++|||.+... ...+..|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~dIAll~L~~~~~~~~~~~~i~l~~~~~-----~~~~~~~~~g~g~~~~~~~~~~~~l  139 (225)
T d1npma_          65 EIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCP-----KVGQKCIISGWGTVTSPQENFPNTL  139 (225)
T ss_dssp             EECEEEEEECTTCCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSCC-----CTTCEEEEEESSCSSSSSCCCCSBC
T ss_pred             eeeeeeeEEEEeeeccCcccchhhhhhhhccccccccccccccccccccc-----cCCceEEEeccceecCCCCCCCCcc
Confidence            5667777777755   4556679999999999999999999999997653     45678899999987543 3456789


Q ss_pred             eEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEE
Q psy2626         263 RHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYT  341 (355)
Q Consensus       263 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt  341 (355)
                      ++..+.+++.+.|++.+..   .+.++++|+.... +.+.|.||+||||++.    |+|+||+|+|.. |+..+.|++||
T Consensus       140 ~~~~~~~~~~~~C~~~~~~---~~~~~~~C~~~~~-~~~~c~gd~G~pl~~~----~~l~Gi~S~g~~~c~~~~~p~vyt  211 (225)
T d1npma_         140 NCAEVKIYSQNKCERAYPG---KITEGMVCAGSSN-GADTCQGDSGGPLVCD----GMLQGITSWGSDPCGKPEKPGVYT  211 (225)
T ss_dssp             EEEEEEECCHHHHHHHSTT---TCCTTEEEEECTT-CCBCCTTCTTCEEEET----TEEEEEEEECCSSSCBTTBCEEEE
T ss_pred             EEEEEEEecHHHHhhhccC---CcCCCEEEecCCC-CCccccCCCCceEEEc----cEEEEEEEECCCCCCCCCCCEEEE
Confidence            9999999999999998764   5789999998765 6789999999999983    599999999977 88878899999


Q ss_pred             eCcccHHHHHhHhC
Q psy2626         342 RVTNYIQWIADNIS  355 (355)
Q Consensus       342 ~V~~y~~WI~~~i~  355 (355)
                      ||++|++||+++|+
T Consensus       212 ~V~~~~~WI~~~i~  225 (225)
T d1npma_         212 KICRYTTWIKKTMD  225 (225)
T ss_dssp             EHHHHHHHHHHHHC
T ss_pred             EHHHHHHHHHHHhC
Confidence            99999999999985

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-47  Score=329.05  Aligned_cols=226  Identities=30%  Similarity=0.529  Sum_probs=189.5

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccC-CCCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLED-TSSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~-~~~~~  186 (355)
                      |+||++|..+||||+|.|.+..         .++|+||||+++||||||||+.....   ....+..+..+... ....+
T Consensus         1 I~gG~~~~~~~~Pw~v~i~~~~---------~~~C~GtLIs~~~VLTaAhCv~~~~~---~~~~v~~~~~~~~~~~~~~~   68 (228)
T d1bioa_           1 ILGGREAEAHARPYMASVQLNG---------AHLCGGVLVAEQWVLSAAHCLEDAAD---GKVQVLLGAHSLSQPEPSKR   68 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT---------EEEEEEEEEETTEEEECGGGGGGCSS---SCEEEEESCSBSSSCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC---------cEEEEEEEEeCCEEEECceeeecccc---ceeeeeccccccccCCccee
Confidence            7899999999999999997642         47899999999999999999986322   34556666655433 35567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      ...|.++++||.|+.....+|||||+|++++.+++++.|+|||....   ....+....+.|||.+...+..+..++...
T Consensus        69 ~~~v~~i~~~~~y~~~~~~~diAll~l~~~~~~~~~v~p~~l~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~  145 (228)
T d1bioa_          69 LYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDR---DVAPGTLCDVAGWGIVNHAGRRPDSLQHVL  145 (228)
T ss_dssp             EEEEEEEEECTTCCTTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCC---CCCTTCEEEEEESSCCSTTCCCCSBCEEEE
T ss_pred             eccceeeeeeecccCCCcccceehhhccccceeeeEEeeeccccccc---ccccCceEEEecceeecCCCCCCCcceEEE
Confidence            88999999999999999999999999999999999999999997654   445677889999999887777788899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeCcc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTN  345 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V~~  345 (355)
                      +++++.+.|...+...  ......+|+.... +.+.|.||+||||++.    |+|+||+|+|.. |+..+.|++||||+.
T Consensus       146 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~gdsG~Pl~~~----~~LvGi~S~g~~~c~~~~~p~v~t~v~~  218 (228)
T d1bioa_         146 LPVLDRATCNRRTHHD--GAITERLMCAESN-RRDSCKGDSGGPLVCG----GVLEGVVTSGSRVCGNRKKPGIYTRVAS  218 (228)
T ss_dssp             EEEECHHHHHSTTTTT--TCCCTTEEEECCS-SCBCCTTTTTCEEEET----TEEEEEECCSCCCSSCTTSCEEEEEGGG
T ss_pred             EEEeCHHHHhhhhccc--ccccccceeeccc-CCCcccCCcCccEEEc----CEEEEEEEECCCCCCCCCCCEEEEEHHH
Confidence            9999999998876542  3445556665544 7889999999999983    599999999866 888888999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++|+
T Consensus       219 ~~~WI~~~i~  228 (228)
T d1bioa_         219 YAAWIDSVLA  228 (228)
T ss_dssp             GHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999985

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=100.00  E-value=5e-47  Score=331.34  Aligned_cols=224  Identities=34%  Similarity=0.643  Sum_probs=187.4

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||++|..+||||+|.|.+..        ..++|+||||+++||||||||+....   .....+..+.... .......
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~--------~~~~C~GtLIs~~~VLTaAhCv~~~~---~~~~~~~~~~~~~-~~~~~~~   68 (228)
T d1fxya_           1 IVGGYNCKDGEVPWQALLINEE--------NEGFCGGTILSEFYILTAAHCLYQAK---RFKVRVGDRNTEQ-EEGGEAV   68 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEECTT--------SCEEEEEEECSSSEEEECGGGTTSCS---SCEEEEECSCTTT-CCCCEEE
T ss_pred             CCCCEECCCCCCCcEEEEEEcC--------CCeEEEEEEeeCCEEEECceeeeccc---ccccccccccccc-cCCccee
Confidence            7899999999999999997543        25789999999999999999997622   2333444443332 2244566


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC-CCCccceEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRHVQ  266 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~  266 (355)
                      ..+..++.||.|......+||||++|+.++.++++++|||||....     .....+.++|||.+.... ..+..|++..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~diAl~~l~~~~~~~~~~~picL~~~~~-----~~~~~~~~~gwg~~~~~~~~~~~~l~~~~  143 (228)
T d1fxya_          69 HEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPP-----ATGTKCLISGWGNTASSGADYPDELQCLD  143 (228)
T ss_dssp             EEEEEEEECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCSSCC-----CTTCEEEEEESSCCCSSSCCCCSSCEEEE
T ss_pred             eeeeccceeeeeeccccccceeehhccccccccccccccccccccc-----ccccEEEEEecccccCCCCCCCchhEEEE
Confidence            7788899999999888899999999999999999999999997653     456789999999876543 3567899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +.+++.+.|+..+..   .+.+.++|++......+.|.||+||||++.    |+|+||+|+|..|+..+.|++||||++|
T Consensus       144 ~~~~~~~~C~~~~~~---~~~~~~~c~~~~~~~~~~~~gd~G~Pl~~~----~~l~Gi~s~g~~~~~~~~p~vft~v~~~  216 (228)
T d1fxya_         144 APVLSQAKCEASYPG---KITSNMFCVGFLEGGKDSCQGDSGGPVVCN----GQLQGVVSWGDGCAQKNKPGVYTKVYNY  216 (228)
T ss_dssp             EEBCCHHHHHHHSTT---TCCTTEEEESCTTCSCBCCTTCTTCEEEET----TEEEEEEEECSSSSBTTBCEEEEEGGGG
T ss_pred             EEEeCHHHHhhhcCC---cccceeeEeecCCCCcccccCccCccEEEe----CEEEEEEEECCCCCCCCCCEEEEEHHHH
Confidence            999999999988754   577889999877777899999999999984    4899999999999887889999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       217 ~~WI~~~i~  225 (228)
T d1fxya_         217 VKWIKNTIA  225 (228)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999984

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=100.00  E-value=6.9e-47  Score=329.47  Aligned_cols=222  Identities=34%  Similarity=0.632  Sum_probs=185.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||.++.+++|||+|+|.+..         .++|+||||+++||||||||+...   ......+..+.....  .....
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~---------~~~C~GtLIs~~~VLTaAhC~~~~---~~~~~~~~~~~~~~~--~~~~~   66 (224)
T d1gdna_           1 IVGGTSASAGDFPFIVSISRNG---------GPWCGGSLLNANTVLTAAHCVSGY---AQSGFQIRAGSLSRT--SGGIT   66 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT---------EEEEEEEEEETTEEEECHHHHTTS---CGGGEEEEESCSBSS--SSSEE
T ss_pred             CCCCEECCCCCCCcEEEEEECC---------CEEEEEEEEeCCEEEECcccceec---cccccceeecccccc--CCcce
Confidence            7899999999999999996532         488999999999999999999762   224455666655443  44577


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC-CCCccceEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRHVQ  266 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~  266 (355)
                      +.+..++.||.|...  .+|||||+|++|+.+++.++|+|++....   ....+..+.++|||.+.... ..+..|+...
T Consensus        67 ~~~~~i~~h~~~~~~--~~DiAll~L~~~v~~~~~~~~i~~~~~~~---~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~  141 (224)
T d1gdna_          67 SSLSSVRVHPSYSGN--NNDLAILKLSTSIPSGGNIGYARLAASGS---DPVAGSSATVAGWGATSEGGSSTPVNLLKVT  141 (224)
T ss_dssp             EEEEEEEECTTCBTT--BSCCEEEEESSCCCCBTTBCCCCBCCTTC---CCCTTCEEEEEESCCSSTTCSCCCSBCEEEE
T ss_pred             EEEEEEEeeeccccc--cceeEEEeeccccccccccceeecccccc---ccccceeeeeeccCccccCCCcCCCEeeeeE
Confidence            788999999988654  58999999999999999999999997664   34567889999999886543 3556799999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +++++.++|+..+..  ..+.+.++|+.....+.+.|.|||||||++   .+|+|+||+|||..|+..+.|+|||||++|
T Consensus       142 v~~i~~~~C~~~~~~--~~~~~~~~~~~~~~~~~~~c~~dsG~pl~~---~~~~l~GI~S~g~~c~~~~~p~vyt~v~~y  216 (224)
T d1gdna_         142 VPIVSRATCRAQYGT--SAITNQMFCAGVSSGGKDSCQGDSGGPIVD---SSNTLIGAVSWGNGCARPNYSGVYASVGAL  216 (224)
T ss_dssp             EEEECHHHHHHHHCT--TTSCTTEEEECCTTCCCBCCTTCTTCEEEC---TTCCEEEEEEECSSSSCTTCCEEEEETTTT
T ss_pred             EEEeCHHHHhccccc--CccccceeeeecCCCCccccccccCCceEe---cCCEEEEEEEeCCCCCCCCCCEEEEEHHHH
Confidence            999999999998765  356788888887776789999999999985   456999999999999988999999999999


Q ss_pred             HHHHHhH
Q psy2626         347 IQWIADN  353 (355)
Q Consensus       347 ~~WI~~~  353 (355)
                      ++||++.
T Consensus       217 ~~WIe~~  223 (224)
T d1gdna_         217 RSFIDTY  223 (224)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHC
Confidence            9999763

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-47  Score=332.70  Aligned_cols=230  Identities=32%  Similarity=0.702  Sum_probs=190.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEecccccc-CCCCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLE-DTSSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~-~~~~~~  186 (355)
                      |+||++|.+++|||+|+|.+..         .++|+||||+++||||||||+....     ...+........ ......
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~---------~~~C~GtLI~~~~VLTaAhCv~~~~-----~~~~~~~~~~~~~~~~~~~   66 (235)
T d1rfna_           1 VVGGEDAKPGQFPWQVVLNGKV---------DAFCGGSIVNEKWIVTAAHCVETGV-----KITVVAGEHNIEETEHTEQ   66 (235)
T ss_dssp             CBTCEECCTTSSTTEEEEESSS---------TTCEEEEEEETTEEEECGGGCCTTC-----CCEEEESCSBSSSCCSCCE
T ss_pred             CCCCEECCCCCcCCEEEEecCC---------CEEEEEEEeeCCEEEEChhhcCCCC-----ceEEEEeecccccCCCCcc
Confidence            7899999999999999996432         4689999999999999999997622     222333333222 224556


Q ss_pred             EEEEeeeEeCCCCCCC--CCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceE
Q psy2626         187 SIEIERPIIHEQYTSA--RKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRH  264 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~--~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~  264 (355)
                      ...+.++++||+|+..  ...+|||||||++|+.++..+.|+|||...... ....+..+.+.||+...........|++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~diAllkL~~~~~~~~~~~p~~l~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~l~~  145 (235)
T d1rfna_          67 KRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTN-IFLKFGSGYVSGWGRVFHKGRSALVLQY  145 (235)
T ss_dssp             EEEEEEEEECTTCBTTTBSSTTCCEEEEESSCCCCBTTBCCCBCCCHHHHH-HHHTTSEEEEEESCBSSTTSCBCSBCEE
T ss_pred             eeeeeEEeeccCCCCCcCccCceEEEEEeCCCccCCCccceeeeccccccc-cccccceEEEeccccccccccccCcceE
Confidence            7889999999999865  345999999999999999999999999654321 2345667889999988877767888999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCc
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT  344 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~  344 (355)
                      +.+++++...|...+..   .+.+..+|++...+..+.|.||+||||++..+++|+|+||+|+|..|+..+.|++||||+
T Consensus       146 ~~~~~~~~~~c~~~~~~---~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~~~~~l~Gi~s~g~~~~~~~~p~vyt~v~  222 (235)
T d1rfna_         146 LRVPLVDRATCLRSTKF---TIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVS  222 (235)
T ss_dssp             EEEEBCCHHHHHHHCSS---CCCTTEEEESCSSCSCBCCTTCTTCEEEEESSSCEEEEEEEEEESSSSCTTCCEEEEEGG
T ss_pred             EEEecccccccccccCc---eecCCeeEeecCCCCccccCCCCCceeEEecCCeEEEEEEEEeCCCCCCCCCCEEEEEHH
Confidence            99999999999887653   566777888777777899999999999999999999999999999999888999999999


Q ss_pred             ccHHHHHhHhC
Q psy2626         345 NYIQWIADNIS  355 (355)
Q Consensus       345 ~y~~WI~~~i~  355 (355)
                      +|++||+++|+
T Consensus       223 ~~~~WI~~~~~  233 (235)
T d1rfna_         223 RYVNWIKEKTK  233 (235)
T ss_dssp             GTHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999999986

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-47  Score=329.45  Aligned_cols=221  Identities=31%  Similarity=0.547  Sum_probs=188.2

Q ss_pred             cCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcEEE
Q psy2626         110 GGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGVSI  188 (355)
Q Consensus       110 gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~~~  188 (355)
                      ||++|+++||||+|+|++...     ....++|+|+||+++||||||||+..       ...|++|.+++... ...+..
T Consensus         1 GG~~a~~~e~Pw~v~i~~~~~-----~~~~~~C~G~LIs~~~VLTaAhCv~~-------~~~v~~g~~~~~~~~~~~~~~   68 (224)
T d1nn6a_           1 GGTECKPHSRPYMAYLEIVTS-----NGPSKFCGGFLIRRNFVLTAAHCAGR-------SITVTLGAHNITEEEDTWQKL   68 (224)
T ss_dssp             CCEECCTTSSTTEEEEEEECT-----TSCEEEEEEEEEETTEEEECGGGCCS-------EEEEEESCSBTTSCCTTCEEE
T ss_pred             CCcCCcCCCCCCEEEEEEEeC-----CCCceEEEEEEEeCCEEEehhhcccc-------cceEEecccccccccccccce
Confidence            799999999999999987643     23467899999999999999999964       46799999888665 456788


Q ss_pred             EEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEe
Q psy2626         189 EIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQIS  268 (355)
Q Consensus       189 ~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~  268 (355)
                      .+.+++.||.|+.....+|||||+|.+|+.++..++|+||+....   ....+..+...||+.+...+..+..++...+.
T Consensus        69 ~~~~~~~~p~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  145 (224)
T d1nn6a_          69 EVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFN---FVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLR  145 (224)
T ss_dssp             EEEEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCSCCC---CCCTTCEEEEEECCCCSSSCCCCSBCEEEEEE
T ss_pred             eEEEEEEeecccccccccchhhhcccCCccccccccccccccccc---ccCCCceeeeccccccccCCCccccceEEEEE
Confidence            999999999999999999999999999999999999999987654   34567788999999887777678889999999


Q ss_pred             eeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHH
Q psy2626         269 VVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQ  348 (355)
Q Consensus       269 ~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~  348 (355)
                      +++.+.|+..+.    ......+|+.......+.|.|||||||++.    |+|+||+|+|..|..  .|++||||+.|++
T Consensus       146 ~~~~~~C~~~~~----~~~~~~~~~~~~~~~~~~c~gDsG~PL~~~----~~l~GI~s~g~~~~~--~p~vyt~v~~y~~  215 (224)
T d1nn6a_         146 LMDPQACSHFRD----FDHNLQLCVGNPRKTKSAFKGDSGGPLLCA----GVAQGIVSYGRSDAK--PPAVFTRISHYRP  215 (224)
T ss_dssp             BCCGGGGTTSTT----CCTTTEEEECCTTTC--CCCCCTTCEEEET----TEEEEEEEECCTTCC--SCEEEEEHHHHHH
T ss_pred             ecCHHHHhhhcc----cccceeeeccCccccccccCCCccceEEEC----CEEEEEEEECCCCCC--CCeEEEEHHHHHH
Confidence            999999987665    345667777766656789999999999984    589999999987653  5999999999999


Q ss_pred             HHHhHhC
Q psy2626         349 WIADNIS  355 (355)
Q Consensus       349 WI~~~i~  355 (355)
                      ||+++|+
T Consensus       216 WI~~~i~  222 (224)
T d1nn6a_         216 WINQILQ  222 (224)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999984

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-47  Score=338.75  Aligned_cols=236  Identities=34%  Similarity=0.649  Sum_probs=184.4

Q ss_pred             CCCC--CcCCCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEe
Q psy2626          97 CGVN--AFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHV  174 (355)
Q Consensus        97 CG~~--~~~~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~  174 (355)
                      ||+.  ......||+||+++..++|||||.|.            .++|+||||+++||||||||+.+.     ....+++
T Consensus         1 cg~~~~~~~~~~ri~gG~~~~~~~~Pw~v~l~------------~~~C~GtLIs~~~VLTaAhCv~~~-----~~~~v~~   63 (259)
T d1elva1           1 CGVPREPFEEKQRIIGGSDADIKNFPWQVFFD------------NPWAGGALINEYWVLTAAHVVEGN-----REPTMYV   63 (259)
T ss_dssp             CSCCSSCC-----CBTCEECCGGGSTTEEEEE------------TTEEEEEEEETTEEEECHHHHTTC-----SSCCEEC
T ss_pred             CcCCCCCCCCCCceECCEECCCCCcceEEEeC------------CceEEEEEEeCCEEEecccccccc-----cceeEEe
Confidence            6663  22356799999999999999999993            258999999999999999999762     2345778


Q ss_pred             ccccccCC--CCcEEEEEeeeEeCCCCCC-------CCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceE
Q psy2626         175 GSIDLEDT--SSGVSIEIERPIIHEQYTS-------ARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPF  245 (355)
Q Consensus       175 G~~~~~~~--~~~~~~~v~~i~~hp~y~~-------~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~  245 (355)
                      |..++...  ...+.+.|.++++||.|..       ....||||||||++|+.++++++|+||+..... .....+..++
T Consensus        64 g~~~~~~~~~~~~~~~~v~~i~~hp~~~~~~~~~~~~~~~~DIAllkL~~~~~~~~~v~pic~~~~~~~-~~~~~~~~~~  142 (259)
T d1elva1          64 GSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSD-YNLMDGDLGL  142 (259)
T ss_dssp             SCSBCC-------CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGG-GCCCTTCEEE
T ss_pred             eeeeeecccccccccccceeEeecceeecccccccCCCcccceeeeecccceehhcccCceeeccCccc-cccccceEEE
Confidence            77765432  4456789999999999953       455689999999999999999999999876542 2345677889


Q ss_pred             EEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcC------CCCCCCCeEEecccCCCCCCCcCCCCCcceeeeC---
Q psy2626         246 VAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY------GATINENILCAGVLSGGKDSCGGDSGGPLMYPLD---  316 (355)
Q Consensus       246 v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~------~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~---  316 (355)
                      +.||+.+.... ....++...+.+++...|...+...      ...+.+.++|++... +.+.|.||+||||++...   
T Consensus       143 ~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~c~gDsGgPl~~~~~~~~  220 (259)
T d1elva1         143 ISGWGRTEKRD-RAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEK-GMDSCKGDSGGAFAVQDPNDK  220 (259)
T ss_dssp             EEESCCCSSCS-SCSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECST-TCBCCTTCTTCEEEEECSSCT
T ss_pred             Eeccccccccc-cccccccceeeEechhhceeeeecccccccccceeecceeeccCCC-CCccCCCCcCCeEEEEecCCC
Confidence            99999877655 5667889999999999998765432      234678888988755 688999999999998753   


Q ss_pred             CeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHhHhC
Q psy2626         317 TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       317 ~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      ++|+|+||+|+|..|+   .|++||||++|++||+++|+
T Consensus       221 ~~~~l~Gi~S~~~~c~---~p~vft~V~~~~~WI~~~i~  256 (259)
T d1elva1         221 TKFYAAGLVSWGPQCG---TYGLYTRVKNYVDWIMKTMQ  256 (259)
T ss_dssp             TCEEEEEEEEECSSTT---SEEEEEEGGGGHHHHHHHHH
T ss_pred             cEEEEEEEEEeCCCCC---CceEEeEHHHHHHHHHHHHH
Confidence            5899999999999996   48999999999999999984

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.2e-46  Score=329.27  Aligned_cols=233  Identities=34%  Similarity=0.656  Sum_probs=192.1

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccC-CCCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLED-TSSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~-~~~~~  186 (355)
                      |+||++|+++||||+|.|.++.     .+...++|+||||+++||||||||+...     ....+.++...... ....+
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~-----~~~~~~~C~GtLIs~~~VLTaAhCv~~~-----~~~~v~~~~~~~~~~~~~~~   70 (241)
T d1brup_           1 VVGGEDARPNSWPWQVSLQYDS-----SGQWRHTCGGTLVDQSWVLTAAHCISSS-----RTYRVVLGRHSLSTNEPGSL   70 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEE-----TTEEEEEEEEEEEETTEEEECGGGCCTT-----SCEEEEESCSBSSSCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEEcC-----CCcceEEeEEEEEeCCEEEECeEeeecc-----cccceeeeccceeccCCCcc
Confidence            7899999999999999998754     3344678999999999999999999752     23445555444333 34567


Q ss_pred             EEEEeeeEeCCCCCCCCCC--CCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceE
Q psy2626         187 SIEIERPIIHEQYTSARKL--NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRH  264 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~--~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~  264 (355)
                      .+.|+++++||.|+.....  +|||||||+.++.++..++||||+....   ....+..+.+.|||........+..++.
T Consensus        71 ~~~v~~~~~~~~~~~~~~~~d~~iall~l~~~~~~~~~~~pi~~~~~~~---~~~~~~~~~~~g~g~~~~~~~~~~~~~~  147 (241)
T d1brup_          71 AVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGT---ILPNNYVCYVTGWGRLQTNGASPDILQQ  147 (241)
T ss_dssp             EEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTC---CCCTTCEEEEEESCCSSTTSCCCSBCEE
T ss_pred             ccceeeeEEEeeeeeccccCCceEEEEecccccccccceeeeeeccccc---cCCCceeEEEEeeeccCCCCcCCCcceE
Confidence            8899999999999876654  6799999999999999999999997764   4456788999999998876667788999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceee-eCCeEEEEEEEEeCCC--CCCCCCCcEEE
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP-LDTKYYIIGVVSYGKK--CAEVGFPGVYT  341 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~-~~~~~~lvGI~S~g~~--C~~~~~p~vyt  341 (355)
                      +.+.+++...|++.+... ..+...++|+.... ..+.|.||+||||++. .+++|+|+||+|+|..  |+..+.|++||
T Consensus       148 ~~~~~~~~~~C~~~~~~~-~~~~~~~~~~~~~~-~~~~C~gdsGgPl~~~~~~~~~~L~Gi~S~g~~~~c~~~~~p~vyt  225 (241)
T d1brup_         148 GQLLVVDYATCSKPGWWG-STVKTNMICAGGDG-IISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFT  225 (241)
T ss_dssp             EEEEEECHHHHTSTTTTG-GGCCTTEEEECCSS-SSBCCTTCTTCEEEEECTTSCEEEEEEEEECBTTBSSCTTCCEEEE
T ss_pred             EEEEEeCHHHhCcccccc-ccccccceeecCCC-CccccCCCcccceEEEcCCCCEEEEEEEEECCCCCCCCCCCCEEEE
Confidence            999999999998765432 35667778877644 7789999999999987 4578999999999976  66778899999


Q ss_pred             eCcccHHHHHhHhC
Q psy2626         342 RVTNYIQWIADNIS  355 (355)
Q Consensus       342 ~V~~y~~WI~~~i~  355 (355)
                      ||++|++||+++|+
T Consensus       226 ~v~~~~~WI~~~i~  239 (241)
T d1brup_         226 RVSNYIDWINSVIA  239 (241)
T ss_dssp             EGGGSHHHHHHHHH
T ss_pred             EHHHHHHHHHHHHh
Confidence            99999999999984

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-46  Score=325.20  Aligned_cols=219  Identities=32%  Similarity=0.626  Sum_probs=188.4

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|..++|||+|.|..          ..++|+||||+++||||||||+..       ...+++|..+.... ....
T Consensus         1 i~GG~~a~~~~~Pw~v~l~~----------~~~~C~GtLIs~~~VLTaAhC~~~-------~~~~~~~~~~~~~~~~~~~   63 (223)
T d1hj9a_           1 IVGGYTCGANTVPYQVSLNS----------GYHFCGGSLINSQWVVSAAHCYKS-------GIQVRLGEDNINVVEGNEQ   63 (223)
T ss_dssp             CCSCEECCTTSSTTEEEEES----------SSEEEEEEEEETTEEEECGGGCCS-------SCEEEESCSSTTSCCSCCE
T ss_pred             CCCCEECCCCCCCeEEEEEC----------CCEEEEEEEeeCCEEEeCeeECCC-------cCcceecccccccccceee
Confidence            78999999999999999931          146899999999999999999965       23466777655433 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCC-CCCCccceEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFR-GPLSPKLRHV  265 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~-~~~~~~l~~~  265 (355)
                      ...+..+++||.|+.....+|||||+|++++.+++.++|+||+....     .....+.+.||+.+... ...+..++..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~diAll~l~~~~~~~~~~~p~cl~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~l~~~  138 (223)
T d1hj9a_          64 FISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCA-----SAGTQCLISGWGNTKSSGTSYPDVLKCL  138 (223)
T ss_dssp             EEEEEEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSCC-----CTTCEEEEEESSCCCSSSCCCCSSCEEE
T ss_pred             eeceeeEEeccccccccccchhhhhhcccceeeeeeeeccccccccc-----cccceEEEEeeccccCCCCCCCccceEE
Confidence            88999999999999999999999999999999999999999997653     35667899999987654 3356779999


Q ss_pred             EEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcc
Q psy2626         266 QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN  345 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~  345 (355)
                      .+.+++.++|++.+..   .+.++++|+....+..+.|.||+||||++.    ++|+||+|||..|+..+.|++||||++
T Consensus       139 ~~~~~~~~~C~~~~~~---~~~~~~~c~~~~~~~~~~~~gd~g~pl~~~----~~L~Gi~S~g~~c~~~~~p~vyt~v~~  211 (223)
T d1hj9a_         139 KAPILSDSSCKSAYPG---QITSNMFCAYGLEGKGDSCQGDSGGPVVCS----GKLQGIVSWGSGCQAKNKPGVYTKVCN  211 (223)
T ss_dssp             EEECCCHHHHHHHSTT---TCCTTEEECCCCCCCCCCCTTCTTCEEEET----TEEEEEEEECSCCCCCCCCCEEEEGGG
T ss_pred             EEeecCHHHHHHHhCC---cccccceEEeecCCCcccccCCCCceeEEe----CEEEEEEEEcCCCCCCCCCEEEEEHHH
Confidence            9999999999998764   578899999887777889999999999984    479999999999988889999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++|+
T Consensus       212 ~~~WI~~~i~  221 (223)
T d1hj9a_         212 YVSWIKQTIA  221 (223)
T ss_dssp             GHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999999985

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=100.00  E-value=3.7e-46  Score=327.81  Aligned_cols=233  Identities=31%  Similarity=0.555  Sum_probs=196.0

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||++++++||||||+|.+..      +...++|+||||+++||||||||+...   ......+..|..+.......+.
T Consensus         1 i~gG~~~~~~e~Pw~v~l~~~~------~~~~~~C~GtLIs~~~VLTaAhCv~~~---~~~~~~v~~~~~~~~~~~~~~~   71 (241)
T d1m9ua_           1 VIGGTNASPGEFPWQLSQQRQS------GSWSHSCGASLLSSTSALSASHCVDGV---LPNNIRVIAGLWQQSDTSGTQT   71 (241)
T ss_dssp             CBTCEECCTTSSTTEEEEEEES------SSEEEEEEEEECSSSEEEECHHHHTTC---CGGGEEEEESCSBTTCCTTCEE
T ss_pred             CCCCEECCCCCCCCEEEEEEeC------CCccEEEEEEEEeCCEEEEChhhcccc---cCceeeEEEEeeeccccccccc
Confidence            7899999999999999997653      344689999999999999999999652   2356778999888877778889


Q ss_pred             EEEeeeEeCCCCCCCC--CCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEE
Q psy2626         188 IEIERPIIHEQYTSAR--KLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHV  265 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~--~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~  265 (355)
                      +.|+++++||.|+...  +.+|||||+|++++.+++.+.|||+|....   ....+..+++.||+........+..++.+
T Consensus        72 ~~v~~~~~h~~~~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  148 (241)
T d1m9ua_          72 ANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNN---NDYAGTTCVISGWGRTDGTNNLPDILQKS  148 (241)
T ss_dssp             EEEEEEEECTTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSS---CCCTTCEEEEEESSCSSSSSCCCSBCEEE
T ss_pred             ccceeeeeeeeeccccccccccceeeeccceeeeeeceeeeeeecccc---ccccceEEEEeecccccCCCCCCCcceEE
Confidence            9999999999998754  568999999999999999999999997654   45577888999999988776678889999


Q ss_pred             EEeeeChhHHHhhhhcCC-CCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC----CCCCCCCCcEE
Q psy2626         266 QISVVDNPKCRQIFSNYG-ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK----KCAEVGFPGVY  340 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~-~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~----~C~~~~~p~vy  340 (355)
                      .+++++.++|++.+...+ .......+|++......+.|.||+||||++.. ++++|+||+|++.    .|+..+.|++|
T Consensus       149 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sGgpl~~~~-~~~~l~Gi~s~~~~~g~~~~~~~~p~vf  227 (241)
T d1m9ua_         149 SIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPD-GGTRVVGVTSWVVSSGLGACLPDYPSVY  227 (241)
T ss_dssp             EEEBCCHHHHHHHHTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEES-SSEEEEEEEEECCBCTTSCBCTTSCEEE
T ss_pred             EEEeechhHhhhhhhcccccccccceeEeecccCCcCcccCCCCcceEEec-CCEEEEEEEEEEEcCCCCCCCCCCCEEE
Confidence            999999999999876543 33456667776666678999999999999764 5789999998654    36666789999


Q ss_pred             EeCcccHHHHHhH
Q psy2626         341 TRVTNYIQWIADN  353 (355)
Q Consensus       341 t~V~~y~~WI~~~  353 (355)
                      |||++|++||+++
T Consensus       228 t~V~~y~~WI~~n  240 (241)
T d1m9ua_         228 TRVSAYLGWIGDN  240 (241)
T ss_dssp             EEGGGTHHHHHHH
T ss_pred             EEHHHhHHHHHHc
Confidence            9999999999987

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=100.00  E-value=1e-46  Score=329.09  Aligned_cols=220  Identities=32%  Similarity=0.610  Sum_probs=184.2

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||.+|..+||||+|.|++..         .++|+||||+++||||||||+...     ....+++|....... ...+
T Consensus         1 i~gG~~a~~~~~Pw~V~i~~~~---------~~~C~GtLIs~~~VLTaAhCv~~~-----~~~~~~~g~~~~~~~~~~~~   66 (226)
T d1azza_           1 IVGGVEAVPNSWPHQAALFIDD---------MYFCGGSLISPEWILTAAHCMDGA-----GFVDVVLGAHNIREDEATQV   66 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT---------TEEEEEEEEETTEEEECHHHHTTC-----SCEEEEESCSBSSSCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC---------cEEEEEEEeeCCEEEEChhhccCC-----cceEEEeccceeccCCcceE
Confidence            7899999999999999997532         489999999999999999999652     345678888776544 4567


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC-CCCccceEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRHV  265 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~  265 (355)
                      ...|+++++||+|+.....+|||||+|++++.++++++||||+....     .....+.++|||.+.... .....|+..
T Consensus        67 ~~~v~~i~~~~~y~~~~~~~diAll~l~~~~~~~~~~~pi~l~~~~~-----~~~~~~~~~g~g~~~~~~~~~~~~l~~~  141 (226)
T d1azza_          67 TIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDV-----GVGTVVTPTGWGLPSDSALGISDVLRQV  141 (226)
T ss_dssp             EEEECCEEECTTCBTTTTBSCCEEEECSSCCCCCSSSCCCBCCSSCC-----CTTCEEEEEESSCSSTTCSSSCSBCEEC
T ss_pred             EEEeeeeeeccccccccccchhhhhhcCCccceeecccccccccccc-----ccccceeeecccccCCCcCccccEeEEE
Confidence            88999999999999999999999999999999999999999997653     456778999999887543 345678999


Q ss_pred             EEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCC-CCCCCcEEEeCc
Q psy2626         266 QISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA-EVGFPGVYTRVT  344 (355)
Q Consensus       266 ~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~-~~~~p~vyt~V~  344 (355)
                      .+++++.+.|+..+..    ....++|..... +.+.|.||+||||++.    |+|+||+|+|..|+ ..+.|++||||+
T Consensus       142 ~~~~~~~~~C~~~~~~----~~~~~~~~~~~~-~~~~c~gdsG~Pl~~~----~~l~Gi~S~g~~~~~~~~~p~v~t~v~  212 (226)
T d1azza_         142 DVPIMSNADCDAVYGI----VTDGNICIDSTG-GKGTCNGDSGGPLNYN----GLTYGITSFGAAAGCEAGYPDAFTRVT  212 (226)
T ss_dssp             CEEEECHHHHHHHHSC----CCTTEEEECCTT-TCBCCTTCTTCEEEET----TEEEEEEEEEETTCTTSCCCEEEEESG
T ss_pred             EEEEEeHHHhhhhhCc----ccccceeccccC-CCccccCCcCCCEEEc----CEEEEEEEEeCCCCCCCCCCEEEEEHH
Confidence            9999999999998863    344555554433 6889999999999874    58999999998864 567899999999


Q ss_pred             ccHHHHHhHhC
Q psy2626         345 NYIQWIADNIS  355 (355)
Q Consensus       345 ~y~~WI~~~i~  355 (355)
                      .|++||+++|.
T Consensus       213 ~y~~WI~~~~g  223 (226)
T d1azza_         213 YFLDWIQTQTG  223 (226)
T ss_dssp             GGHHHHHHHHC
T ss_pred             HhHHHHHHHhC
Confidence            99999999873

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-46  Score=331.08  Aligned_cols=220  Identities=32%  Similarity=0.669  Sum_probs=185.9

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||++++.+||||||.|.+..         .++|+||||+++||||||||+..       ...|++|...+... ...+
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~---------~~~C~GtLIs~~~VLTaAhCv~~-------~~~v~~~~~~~~~~~~~~~   64 (237)
T d1ao5a_           1 VVGGFNCEKNSQPWQVAVYYQK---------EHICGGVLLDRNWVLTAAHCYVD-------QYEVWLGKNKLFQEEPSAQ   64 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT---------EEEEEEEEEETTEEEECTTCCCS-------SCEEEESCCBSSSCCSSCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC---------cEEEEEEEeeCCEEEECHHHcCC-------CceEEEEeccccccccccE
Confidence            7899999999999999997532         47999999999999999999964       24588888776544 4567


Q ss_pred             EEEEeeeEeCCCCCCC-----------CCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCC
Q psy2626         187 SIEIERPIIHEQYTSA-----------RKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFR  255 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~-----------~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~  255 (355)
                      .+.+++++.||.|+..           ...+|||||||++++.+++.++|+|||....     .....++++|||.....
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiAll~L~~~i~~~~~~~~i~lp~~~~-----~~~~~~~~~g~~~~~~~  139 (237)
T d1ao5a_          65 HRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEP-----KPGSKCLASGWGSITPT  139 (237)
T ss_dssp             ECCEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSCC-----CTTCEEEEEESCCSSCC
T ss_pred             EEEEEEEeecccccccccccccccCccccccceeeeccCcccccccccceeccCCCCC-----cccceEEEeeeeeeccc
Confidence            7889999999998643           2348999999999999999999999997653     45678899999976544


Q ss_pred             C-CCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCC
Q psy2626         256 G-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAE  333 (355)
Q Consensus       256 ~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~  333 (355)
                      . ..+..+....+..++...|...+..   .+.++++|+.....+.+.|.||+||||++.    ++|+||+|||.. |+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~c~~~~~~---~~~~~~~~~~~~~~~~~~c~gdsG~pl~~~----~~l~Gi~S~g~~~c~~  212 (237)
T d1ao5a_         140 RWQKPDDLQCVFITLLPNENCAKVYLQ---KVTDVMLCAGEMGGGKDTCRDDSGGPLICD----GILQGTTSYGPVPCGK  212 (237)
T ss_dssp             -CCCCSBCEEEEEEEECHHHHHHHCSS---CCCTTEEEEECTTCSCBCCTTCTTCEEEET----TEEEEEEEECCSSTTC
T ss_pred             cccCCccceeeEEEEEehHHhhhhhcC---CCCCCeEEEccCCCCCcccCCCCCCeeEEc----cEEEEEEEEecCCCCC
Confidence            3 3566788899999999999988764   677889999877667889999999999974    599999999976 888


Q ss_pred             CCCCcEEEeCcccHHHHHhHhC
Q psy2626         334 VGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       334 ~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      .+.|++||||+.|++||+++|+
T Consensus       213 ~~~p~vft~V~~y~~WI~~~i~  234 (237)
T d1ao5a_         213 PGVPAIYTNLIKFNSWIKDTMM  234 (237)
T ss_dssp             TTCCEEEECGGGGHHHHHHHHH
T ss_pred             CCCCeEEEEHHHHHHHHHHHHH
Confidence            8889999999999999999984

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-46  Score=324.78  Aligned_cols=220  Identities=29%  Similarity=0.460  Sum_probs=184.7

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||.+|+.+||||+|.|++...      ...++|+||||+++||||||||+...   ......|++|............
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~------~~~~~C~GtLIs~~~VLTaAhCv~~~---~~~~~~v~~g~~~~~~~~~~~~   71 (221)
T d1fuja_           1 IVGGHEAQPHSRPYMASLQMRGN------PGSHFCGGTLIHPSFVLTAAHCLRDI---PQRLVNVVLGAHNVRTQEPTQQ   71 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTB------TTCCCEEEEEEETTEEEECGGGGSSS---CGGGEEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEEecC------CCCEEEEEEEEeCCEEEEeeEEEeec---CCccceeeeeccccccccccce
Confidence            78999999999999999976532      23578999999999999999999763   3356789999988877777788


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI  267 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~  267 (355)
                      +.+.+++.||.|+.....+|||||+|++++.++++++|||||....   ....+..++++||+.....+.....+....+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~diAll~L~~~~~~~~~v~picl~~~~~---~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~  148 (221)
T d1fuja_          72 HFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQ---PVPHGTQCLAMGWGRVGAHDPPAQVLQELNV  148 (221)
T ss_dssp             EEEEEEEEECCCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTC---CCCTTCEEEEEESSBSCSSSCBCSBCEEEEE
T ss_pred             eeeeeeEEEeeecCCCCccEEEEEEccccccccceEEEEEeccccc---ccCCCceEEEecccccccccccCccceeeee
Confidence            9999999999999999999999999999999999999999998764   3456778899999998777767778888888


Q ss_pred             eeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC-CCCCCCCCcEEEeCccc
Q psy2626         268 SVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       268 ~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~-~C~~~~~p~vyt~V~~y  346 (355)
                      .+.+...|.           ....|... ..+.+.|.||+||||++.    ++|+||+||+. +|+..+.|++||||+.|
T Consensus       149 ~~~~~~~~~-----------~~~~~~~~-~~~~~~c~gd~G~pl~~~----~~l~Gi~s~~~~gc~~~~~p~vyt~v~~~  212 (221)
T d1fuja_         149 TVVTFFCRP-----------HNICTFVP-RRKAGICFGDSGGPLICD----GIIQGIDSFVIWGCATRLFPDFFTRVALY  212 (221)
T ss_dssp             EEECTTCCT-----------TEEEEECS-SSSCBCCTTCTTCEEEET----TEEEEEEEECSSSTTCSSSCEEEEEGGGG
T ss_pred             eeeeecccc-----------ccceeccc-cCCCceeCCccCCCEEEe----CEEEEEEEEEECCCCCCCCCeEEEEHHHh
Confidence            887643221           12234333 447899999999999974    48999999986 48888889999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++||
T Consensus       213 ~~WI~~~ik  221 (221)
T d1fuja_         213 VDWIRSTLR  221 (221)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999997

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.1e-46  Score=329.19  Aligned_cols=233  Identities=30%  Similarity=0.551  Sum_probs=190.0

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCC-cE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSS-GV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~-~~  186 (355)
                      |+||++|+++||||+|+|.+..     +....++|+||||+++||||||||+...     ....|.+|......... ..
T Consensus         1 i~~G~~a~~~~~Pw~v~i~~~~-----~~~~~~~C~GtLIs~~~VLTaAhCv~~~-----~~~~v~~g~~~~~~~~~~~~   70 (240)
T d1gvkb_           1 VVGGTEAQRNSWPSQISLQYRS-----GSSWAHTCGGTLIRQNWVMTAAHCVDRE-----LTFRVVVGEHNLNQNNGTEQ   70 (240)
T ss_dssp             CBTCEECCTTSCTTEEEEEEEE-----TTEEEEEEEEEEEETTEEEECGGGGCSC-----CCEEEEESCSBTTSCCSCCE
T ss_pred             CCCCEECCCCCCCEEEEEEEec-----CCccceEEEEEEEeCCEEEECccccccc-----CCceEEeeeeeccccccccc
Confidence            7899999999999999998764     2334578999999999999999999752     23567888877665422 22


Q ss_pred             EEEEe--eeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceE
Q psy2626         187 SIEIE--RPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRH  264 (355)
Q Consensus       187 ~~~v~--~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~  264 (355)
                      .....  .++.|+.++.....+|||||+|.+++.+++.++|+||+....   .........++||+.+.........++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~diAll~l~~~~~~~~~~~p~~l~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~l~~  147 (240)
T d1gvkb_          71 YVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGT---ILANNSPCYITGWGLTRTNGQLAQTLQQ  147 (240)
T ss_dssp             EEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTC---CCCTTCCEEEEESCBSSTTCCBCSBCEE
T ss_pred             cccccceeEEEeecccccccCcceeeecccCcccccccccceeeccCcc---ccccccceeEeccccccccccccceeeE
Confidence            33333  344555666667779999999999999999999999997664   3345566788999988877667788999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC--CCCCCCCcEEEe
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYTR  342 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~--C~~~~~p~vyt~  342 (355)
                      ..+++++...|...+... ....+.++|+.... ..+.|.||+||||++..+++|+|+||+||+..  |+..+.|+||||
T Consensus       148 ~~~~~~~~~~~~~~~~~~-~~~~~~~~c~~~~~-~~~~c~gDsG~pl~~~~~~~~~lvGI~S~~~~~~c~~~~~p~vyt~  225 (240)
T d1gvkb_         148 AYLPTVDYAICSSSSYWG-STVKNSMVCAGGDG-VRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTR  225 (240)
T ss_dssp             EECCEECHHHHTSTTTTG-GGCCTTEEEECCSS-SCBCCTTCTTCEEEEEETTEEEEEEEEEECBTTBSSCTTCCEEEEE
T ss_pred             EEEEEEcHHHhcceeccC-CccCCceEEecCCC-CCccccCccccceEEEECCEEEEEEEEEEcCCCCCCCCCCCEEEEE
Confidence            999999999998776542 35678899998755 67899999999999999999999999999876  667788999999


Q ss_pred             CcccHHHHHhHhC
Q psy2626         343 VTNYIQWIADNIS  355 (355)
Q Consensus       343 V~~y~~WI~~~i~  355 (355)
                      |+.|++||+++|+
T Consensus       226 v~~~~~WI~~~i~  238 (240)
T d1gvkb_         226 VSAYISWINNVIA  238 (240)
T ss_dssp             GGGSHHHHHHHHH
T ss_pred             HHHhHHHHHHHHh
Confidence            9999999999984

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-46  Score=327.97  Aligned_cols=240  Identities=33%  Similarity=0.614  Sum_probs=186.1

Q ss_pred             CCCCCCcC---CCCceecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEE
Q psy2626          96 ECGVNAFN---SSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIV  172 (355)
Q Consensus        96 ~CG~~~~~---~~~ri~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v  172 (355)
                      +||+....   ...||+||.+|++++|||+|.|..+.        ..++|+||||+++||||||||+....  .......
T Consensus         3 ~cg~~~~~~~~~~~ri~gG~~a~~~~~Pw~v~i~~~~--------~~~~C~GtLIs~~~VLTaAhCv~~~~--~~~~~~~   72 (247)
T d1rjxb_           3 DCGKPQVEPKKCPGAVVGGCVAYPHSWPWQVSLRTRF--------GMHFCGGTLISPEWVLTAAHCLEKSP--RPSSYKV   72 (247)
T ss_dssp             STTCCSSCCCCCCTTSTTCEECCTTSSTTEEEEEETT--------CCEEEEEEEEETTEEEEEGGGGTTCS--CGGGEEE
T ss_pred             CCCCCCcCCCCCCCeEECCEECCCCCCCcEEEEEECC--------CCEEEEEEEEeCCEEEeeeEEEEecc--CCcccee
Confidence            79985432   35699999999999999999996532        25789999999999999999997632  2222333


Q ss_pred             EeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccC
Q psy2626         173 HVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST  252 (355)
Q Consensus       173 ~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~  252 (355)
                      ..+........     ...+.+.|+.|......+|||||+|++++.+++.+.|+||+....   ........+..|||..
T Consensus        73 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~DiAl~~L~~~~~~~~~~~p~~l~~~~~---~~~~~~~~~~~g~~~~  144 (247)
T d1rjxb_          73 ILGAHQEVNLE-----PHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNY---VVADRTECFITGWGET  144 (247)
T ss_dssp             EESCCBSSSCC-----TTCEEEEEEEEEECSSSCCEEEEEESSCCCCCSSCCCCBCCCTTC---CCCTTCEEEEEECCC-
T ss_pred             ecccccccccc-----ceeeEEeeccccCCCccchhhhhhhhccccccccccccccccccc---ccCCCceeeecccccc
Confidence            33332222211     123344455555555679999999999999999999999987654   3345666788899876


Q ss_pred             CCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCC
Q psy2626         253 VFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA  332 (355)
Q Consensus       253 ~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~  332 (355)
                      .... ....++...+.+++.+.|...... .....+.++|++......+.|.|||||||++..+++|+|+||+|+|..|+
T Consensus       145 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~S~~~~c~  222 (247)
T d1rjxb_         145 QGTF-GAGLLMEAQLPVIENKVCNRYEFL-NGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCA  222 (247)
T ss_dssp             ---C-CCSBCEEEEEEEECHHHHTSTTTT-TTCSCTTEEEESCSSSCCCBCCSCTTCEEEEECSSSEEEEEEECTTSCCB
T ss_pred             cCCC-CCCcceEEEEEEEchHHhhhhhcc-CcccccceeEEeccCCCcccccCCccceEEEeeCCEEEEEEEEEeCCCCC
Confidence            5443 677889999999999999876553 24567889999887767899999999999999999999999999999998


Q ss_pred             CCCCCcEEEeCcccHHHHHhHhC
Q psy2626         333 EVGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       333 ~~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      ..+.|++||||++|++||+++|+
T Consensus       223 ~~~~p~v~t~v~~~~~WI~~~i~  245 (247)
T d1rjxb_         223 RPNKPGVYVRVSRFVTWIEGVMR  245 (247)
T ss_dssp             BTTBCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCCEEEEEHHHHHHHHHHHHh
Confidence            88889999999999999999985

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-46  Score=323.84  Aligned_cols=217  Identities=27%  Similarity=0.518  Sum_probs=184.9

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||++|.++||||||.|.+..         .++|+||||+++||||||||+...   ......+.++..+.........
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~---------~~~C~G~LIs~~~VLTaAhC~~~~---~~~~~~v~~~~~~~~~~~~~~~   68 (218)
T d2z7fe1           1 IVGGRRARPHAWPFMVSLQLRG---------GHFCGATLIAPNFVMSAAHCVANV---NVRAVRVVLGAHNLSRREPTRQ   68 (218)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT---------EEEEEEEEEETTEEEECHHHHTTS---CGGGCEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC---------CeEEEEEEEeCCEEEECeEecccc---cccceeeeeeecccccccccee
Confidence            7899999999999999997643         478999999999999999999762   2356778999888877777778


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI  267 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~  267 (355)
                      +.+..++.|+.|+.....+|||||+|++|+.+++.++|||||....   .......++++|||........+..|+.+.+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~diall~l~~~~~~~~~~~pi~l~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~  145 (218)
T d2z7fe1          69 VFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGR---RLGNGVQCLAMGWGLLGRNRGIASVLQELNV  145 (218)
T ss_dssp             EEEEEEEEESCCBTTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTC---CCCTTCEEEEEESSBCSSSCCBCSBCEEEEE
T ss_pred             eeeeeeEeeeccccccccceEEEeeccccceeeeeeeeeeeccCcc---ccCCCcEEEEeccceeecccccccceeEEEe
Confidence            8899999999999999999999999999999999999999997664   4456678899999998877767788999999


Q ss_pred             eeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeCccc
Q psy2626         268 SVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNY  346 (355)
Q Consensus       268 ~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V~~y  346 (355)
                      ++.+. .|+           ..+.|+.......+.|.|||||||++.    |+|+||+||+.. |+..+.|++||||++|
T Consensus       146 ~~~~~-~c~-----------~~~~~~~~~~~~~~~C~gdsG~Pl~~~----~~l~GI~s~~~~~c~~~~~p~vft~v~~~  209 (218)
T d2z7fe1         146 TVVTS-LCR-----------RSNVCTLVRGRQAGVCFGDSGSPLVCN----GLIHGIASFVRGGCASGLYPDAFAPVAQF  209 (218)
T ss_dssp             EEECT-TCC-----------TTSEEEECTTSCCBCCTTCTTCEEEET----TEEEEEEEEESSSTTCSSSCEEEEEGGGG
T ss_pred             ccccc-ccc-----------eeeeeeeecCcccCccccccCCCEEEC----CEEEEEEEEecCCCCCCCcCEEEEEhHHh
Confidence            88763 343           345676655556789999999999984    589999999865 8888889999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++||
T Consensus       210 ~~WI~~~i~  218 (218)
T d2z7fe1         210 VNWIDSIIQ  218 (218)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999986

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=1.3e-45  Score=323.49  Aligned_cols=218  Identities=34%  Similarity=0.642  Sum_probs=178.0

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccC-CCCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLED-TSSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~-~~~~~  186 (355)
                      |+||++|+++||||||+|.+           .++|+||||+++||||||||+...       ..+.+....... .....
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~-----------~~~C~GtLIs~~~VLTaAhCv~~~-------~~~~~~~~~~~~~~~~~~   62 (235)
T d1tona_           1 IVGGYKCEKNSQPWQVAVIN-----------EYLCGGVLIDPSWVITAAHCYSNN-------YQVLLGRNNLFKDEPFAQ   62 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEES-----------SSEEEEEEEETTEEEECGGGCCSC-------CEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCeEEEEcC-----------CeEEEEEEecCCEEEECceecCCC-------CceEEeeeeeecCCCcee
Confidence            78999999999999999953           378999999999999999999751       234444443332 23445


Q ss_pred             EEEEeeeEeCCCCCC-----------CCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCC
Q psy2626         187 SIEIERPIIHEQYTS-----------ARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFR  255 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~-----------~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~  255 (355)
                      ...+.++..|+.|..           ....+|||||+|.+++.|++.+.|+||+....     .....+.++|||.+...
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diall~L~~~v~~~~~i~~i~l~~~~~-----~~~~~~~~~g~g~~~~~  137 (235)
T d1tona_          63 RRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEP-----KVGSTCLASGWGSTNPS  137 (235)
T ss_dssp             EECEEEEEECTTCCCC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSCC-----CTTCEEEEEESSCSSSS
T ss_pred             EeeeeeeeeeeeceeeeeeecccccccccccceeEEEecCccccCCcccccccccccc-----cccceeEEEEccccccc
Confidence            566777777777643           44558999999999999999999999986553     45667889999987654


Q ss_pred             C-CCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCC
Q psy2626         256 G-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAE  333 (355)
Q Consensus       256 ~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~  333 (355)
                      . .....|+...+++++.++|+..+..   ...+.++|++...++.+.|.||+||||++.    |+|+||+|||.. |+.
T Consensus       138 ~~~~~~~l~~~~~~~~~~~~C~~~~~~---~~~~~~~c~~~~~~~~~~c~gdsG~Pl~~~----~~l~Gi~S~g~~~c~~  210 (235)
T d1tona_         138 EMVVSHDLQCVNIHLLSNEKCIETYKD---NVTDVMLCAGEMEGGKDTCAGDSGGPLICD----GVLQGITSGGATPCAK  210 (235)
T ss_dssp             SCCCCSBCEEEEEEEECGGGCGGGGST---TGGGGEEEEECTTCSCBCCTTCTTCEEEET----TEEEEEECCCCSSCSC
T ss_pred             cccccccceeeeeeeeCHHHHHHHhCC---CCCCCceEeCcCCCCccccCCCcCCeEEEc----CEEEEEEEeCCCCCCC
Confidence            3 3556799999999999999998764   567889999877767889999999999983    599999999986 877


Q ss_pred             CCCCcEEEeCcccHHHHHhHhC
Q psy2626         334 VGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       334 ~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      .+.|++||||++|++||+++|+
T Consensus       211 ~~~p~vyt~v~~y~~WI~~~i~  232 (235)
T d1tona_         211 PKTPAIYAKLIKFTSWIKKVMK  232 (235)
T ss_dssp             TTCCEEEEEGGGGHHHHHHHHH
T ss_pred             CCCCeEEEEHHHHHHHHHHHHH
Confidence            7889999999999999999984

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=3.7e-45  Score=320.53  Aligned_cols=231  Identities=32%  Similarity=0.626  Sum_probs=189.1

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||++|+++||||+|+|++...     +...++|+||||+++||||||||+...     ....+.+|....... ....
T Consensus         1 iigG~~~~~~~~Pw~v~i~~~~~-----~~~~~~C~GtLIs~~~VLTaAhCv~~~-----~~~~v~~~~~~~~~~~~~~~   70 (236)
T d1elta_           1 VVGGRVAQPNSWPWQISLQYKSG-----SSYYHTCGGSLIRQGWVMTAAHCVDSA-----RTWRVVLGEHNLNTNEGKEQ   70 (236)
T ss_dssp             CBSSEECCTTSSTTEEEEEEEET-----TEEEEEEEEEEEETTEEEECHHHHSSC-----CCEEEEESCSBTTSCCSCCE
T ss_pred             CCCCEECCCCCCCcEEEEEEccC-----CcceeEEEEEEEeCCEEEECeeecccc-----ccceeeccceeeecccCCce
Confidence            78999999999999999987643     334678999999999999999999762     235577776554433 4556


Q ss_pred             EEEEeeeEeCCCCCCCCC--CCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceE
Q psy2626         187 SIEIERPIIHEQYTSARK--LNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRH  264 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~--~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~  264 (355)
                      ...+..+.+||.|+....  .+|||||+|++++.++..++|||||....   .......+++.|||...........+++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~diall~l~~~~~~~~~~~picL~~~~~---~~~~~~~~~~~g~g~~~~~~~~~~~~~~  147 (236)
T d1elta_          71 IMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQ---ILPNNNPCYITGWGKTSTGGPLSDSLKQ  147 (236)
T ss_dssp             EECEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTC---CCCTTCCEEEEESCCSSTTCCCCSBCEE
T ss_pred             eeeeeEEEEeeeecccccccCceEEEeeccCcceeecccceeecCchhc---ccCCCceEEEecccccccCcccCcccee
Confidence            777888888998877654  47999999999999999999999997654   3445677899999998877767788999


Q ss_pred             EEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCC--CCCCCCCCcEEEe
Q psy2626         265 VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK--KCAEVGFPGVYTR  342 (355)
Q Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~--~C~~~~~p~vyt~  342 (355)
                      ..+.+++.++|....... ......++|+...  ..+.|.||+||||++..+++|+|+||+||+.  .|+..+.|+||||
T Consensus       148 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~c~gdsGgpl~~~~~~~~~l~GI~s~~~~~~c~~~~~p~vyt~  224 (236)
T d1elta_         148 AWLPSVDHATCSSSGWWG-STVKTTMVCAGGG--ANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTR  224 (236)
T ss_dssp             EECCEECHHHHTSTTTTG-GGSCTTEEEECCS--SCBCCTTCTTCEEEEEETTEEEEEEEEEECCSSCTTCTTCCEEEEE
T ss_pred             eeeEEEcHHHhhhhcccc-cccceeeeecCCc--cccccccccccceEEEECCeEEEEEEEEEeCCCCCCCCCCCEEEEE
Confidence            999999999998765432 2345556666542  5678999999999999999999999999975  4888888999999


Q ss_pred             CcccHHHHHhHh
Q psy2626         343 VTNYIQWIADNI  354 (355)
Q Consensus       343 V~~y~~WI~~~i  354 (355)
                      |++|++||+++|
T Consensus       225 v~~y~~WI~~vi  236 (236)
T d1elta_         225 VSAYISWMNGIM  236 (236)
T ss_dssp             GGGGHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999999986

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-45  Score=319.11  Aligned_cols=217  Identities=31%  Similarity=0.514  Sum_probs=179.3

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC-CCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT-SSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~-~~~~  186 (355)
                      |+||++|..+||||+|.|....         .++|+||||+++||||||||+...   ......+.++..+.... ....
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~---------~~~C~GtLIs~~~VLTaAhCv~~~---~~~~~~~~~~~~~~~~~~~~~~   68 (225)
T d1a7sa_           1 IVGGRKARPRQFPFLASIQNQG---------RHFCGGALIHARFVMTAASCFQSQ---NPGVSTVVLGAYDLRRRERQSR   68 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT---------EEEEEEEEEETTEEEECGGGC-------CCSEEEEESCSSTTSCCTTTC
T ss_pred             CCCCEECCCCCCCcEEEEEECC---------cEEEEEEEEcCCEEEECeeeeeec---cccceeeEEeeeeccccccccc
Confidence            7899999999999999996532         478999999999999999999762   23456677777665443 3455


Q ss_pred             EEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEE
Q psy2626         187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQ  266 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~  266 (355)
                      ...+..++.|+.|+.....||||||||++|+.+.++++|+||+....   ....+..+.++|||...........++...
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~DIAll~L~~~i~~~~~~~~~~l~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~  145 (225)
T d1a7sa_          69 QTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNA---TVEAGTRCQVAGWGSQRSGGRLSRFPRFVN  145 (225)
T ss_dssp             EEEEEEEEECSSCBTTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTC---CCCTTCEEEEEESCCSSTTCCCCSSCEEEE
T ss_pred             ceeeeeeeeeeeccccccccccchhhcCCcccccccceeEEeecccc---ccCCCceeEeccccccccccccccceeEEE
Confidence            67788899999999999999999999999999999999999986654   445678899999999887776778899999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCccc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY  346 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y  346 (355)
                      +.+++.+.|...           ..|++......+.|.||+||||++.    |+|+||+|||..|.. ..|++||||++|
T Consensus       146 ~~~~~~~~C~~~-----------~~~~~~~~~~~~~c~gdsG~Pl~~~----~~l~Gi~S~~~~~c~-~~p~v~t~v~~y  209 (225)
T d1a7sa_         146 VTVTPEDQCRPN-----------NVCTGVLTRRGGICNGDGGTPLVCE----GLAHGVASFSLGPCG-RGPDFFTRVALF  209 (225)
T ss_dssp             EEECCGGGSCTT-----------EEEEECSSSSCBCCTTCTTCEEEET----TEEEEEEEEECSSTT-SSCEEEEEGGGG
T ss_pred             EEEeehhhcccc-----------cceeeecccccccccCCCCCCEEEe----CEEEEEEEECCCCCC-CCCCEEEEHHHH
Confidence            999999999643           3555555557889999999999984    589999999987443 359999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|+
T Consensus       210 ~~WI~~~i~  218 (225)
T d1a7sa_         210 RDWIDGVLN  218 (225)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHC
Confidence            999999884

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=100.00  E-value=2.4e-45  Score=319.90  Aligned_cols=219  Identities=33%  Similarity=0.605  Sum_probs=173.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||++|++++|||+|+|.             +.|+||||+++||||||||+...  .....+.|++|..+.... ..+.
T Consensus         1 ~~gG~~~~~~~~Pw~v~l~-------------~~C~GtLIs~~~VLTaAhCv~~~--~~~~~~~v~~g~~~~~~~-~~~~   64 (223)
T d1os8a_           1 VVGGTRAAQGEFPFMVRLS-------------MGCGGALYAQDIVLTAAHCVSGS--GNNTSITATGGVVDLQSS-SAVK   64 (223)
T ss_dssp             CBSCEECCTTSSTTEEEET-------------TTEEEEEEETTEEEECGGGSSCS--EECCCCEEEESCSBTTCT-TCEE
T ss_pred             CCCCEECCCCCCCcEEEEe-------------ccEeEEEEeCCEEEEChhhccCC--CCcceeeecccccccccc-cccc
Confidence            7899999999999999993             46999999999999999999752  233467889998886543 3344


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI  267 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~  267 (355)
                        ++.+.+||.|+.....||||||||++++.+     |+|++...    ....+..+.+.||+........+..++...+
T Consensus        65 --i~~~~i~~~~~~~~~~~DIAllkL~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (223)
T d1os8a_          65 --VRSTKVLQAPGYNGTGKDWALIKLAQPINQ-----PTLKIATT----TAYNQGTFTVAGWGANREGGSQQRYLLKANV  133 (223)
T ss_dssp             --EEEEEEEECTTCSSSSCCCEEEEESSCCCS-----CCCEECCS----STTSSSEEEEEESSCSSTTCCCCSBCEEEEE
T ss_pred             --ceeeeeeecccccccceeeeeeeeeeeeec-----cccccccc----ccccccceEEeecccccccccccccccccee
Confidence              455555555666667799999999998875     44544333    2345678899999988777767888999999


Q ss_pred             eeeChhHHHhhhhcCCCCCCCCeEEec-ccCCCCCCCcCCCCCcceeeeC-CeEEEEEEEEeCCCCCCCCCCcEEEeCcc
Q psy2626         268 SVVDNPKCRQIFSNYGATINENILCAG-VLSGGKDSCGGDSGGPLMYPLD-TKYYIIGVVSYGKKCAEVGFPGVYTRVTN  345 (355)
Q Consensus       268 ~~~~~~~C~~~~~~~~~~~~~~~~Ca~-~~~~~~~~C~GDsGgPL~~~~~-~~~~lvGI~S~g~~C~~~~~p~vyt~V~~  345 (355)
                      .+++.++|+..+...  .....++|.. ...+..+.|.+|+|+||++..+ ++|+|+||+|||..|+..+.|++||||++
T Consensus       134 ~~~~~~~C~~~~~~~--~~~~~~~~~~~~~~~~~~~c~~~~G~pl~~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~V~~  211 (223)
T d1os8a_         134 PFVSDAACRSAYGNE--LVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVST  211 (223)
T ss_dssp             EEECHHHHHHHHGGG--SCTTTEEEESCTTTCCCBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEEHHH
T ss_pred             eEeCHHHhhhhhcCC--CccCcceeeeccccCCcCccccccccceEEecCCCeEEEEEEEEeCCCCCCCCCCEEEEEHHH
Confidence            999999999887653  3344555544 3344578999999999998754 68999999999999998889999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++||
T Consensus       212 y~~WI~~~~k  221 (223)
T d1os8a_         212 FASAIASAAR  221 (223)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999985

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=100.00  E-value=6.2e-45  Score=318.41  Aligned_cols=226  Identities=34%  Similarity=0.595  Sum_probs=183.8

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||++|..+||||+|.|++...     ....++|+||||+++||||||||+..     .....+++|..+..  ...+.
T Consensus         1 i~~G~~a~~ge~Pw~v~i~~~~~-----~~~~~~C~GtLIs~~~VLTaAhC~~~-----~~~~~v~~~~~~~~--~~~~~   68 (230)
T d2hlca_           1 IINGYEAYTGLFPYQAGLDITLQ-----DQRRVWCGGSLIDNKWILTAAHCVHD-----AVSVVVYLGSAVQY--EGEAV   68 (230)
T ss_dssp             CBTCEECCTTTSTTEEEEEEEET-----TSCEEEEEEEEEETTEEEECHHHHTT-----EEEEEEEESCSBTT--CCSEE
T ss_pred             CCCCEECCCCCCCCEEEEEEEec-----CCCeeEEEEEEEeCCEEEEeeecccc-----cccceeecccceec--ccccc
Confidence            78999999999999999987543     23467899999999999999999964     23466778776544  45688


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI  267 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~  267 (355)
                      +.|+++++||.|+.....+|||||+|+++ .++++++|||||...... ....+..+.+.|||....   ....++...+
T Consensus        69 ~~v~~i~~hp~y~~~~~~~DiALl~L~~~-~~~~~v~pi~l~~~~~~~-~~~~~~~~~~~g~~~~~~---~~~~~~~~~~  143 (230)
T d2hlca_          69 VNSERIISHSMFNPDTYLNDVALIKIPHV-EYTDNIQPIRLPSGEELN-NKFENIWATVSGWGQSNT---DTVILQYTYN  143 (230)
T ss_dssp             EECSEEEECTTCBTTTTBTCCEEEECSCC-CCCSSCCCCBCCCGGGGG-CCCTTCEEEEEESSCCSS---CCCBCEEEEE
T ss_pred             eeeEeEEeeecccccccccceeEEEeecc-cccccceeEEeecccccc-ccccceeEEEEeeccccc---cchhhheeee
Confidence            99999999999999999999999999876 578899999999765422 224556677888886542   4567889999


Q ss_pred             eeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeCccc
Q psy2626         268 SVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTNY  346 (355)
Q Consensus       268 ~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V~~y  346 (355)
                      ..++.+.|...+..  ....+.++|+.... ..+.|.|||||||++.  ++|+|+||+|++.. |+..+.|++||||++|
T Consensus       144 ~~~~~~~c~~~~~~--~~~~~~~~~~~~~~-~~~~~~gdsGgp~~~~--~~~~l~Gi~S~~~~~~~~~~~p~vyt~V~~y  218 (230)
T d2hlca_         144 LVIDNDRCAQEYPP--GIIVESTICGDTSD-GKSPCFGDSGGPFVLS--DKNLLIGVVSFVSGAGCESGKPVGFSRVTSY  218 (230)
T ss_dssp             EEECHHHHHTTSCT--TSSCTTEEEECCTT-SCBCCTTCTTCEEEEG--GGTEEEEEEEECCTTCTTSCCCEEEEEGGGG
T ss_pred             ccccchhhhhcccc--ccccccceEecccc-CccccccccCCCeEEC--CCeEEEEEEEEeCCCCCCCCCCeEEEEhHHh
Confidence            99999999987654  35567788887644 7889999999999974  57899999999887 3456789999999999


Q ss_pred             HHHHHhHhC
Q psy2626         347 IQWIADNIS  355 (355)
Q Consensus       347 ~~WI~~~i~  355 (355)
                      ++||+++|.
T Consensus       219 ~~WI~~~~~  227 (230)
T d2hlca_         219 MDWIQQNTG  227 (230)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999999874

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-46  Score=338.76  Aligned_cols=230  Identities=25%  Similarity=0.424  Sum_probs=162.9

Q ss_pred             eecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEe
Q psy2626         112 TPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIE  191 (355)
Q Consensus       112 ~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~  191 (355)
                      ..+..+||||||.|.+...     ....++|+||||+++||||||||+...  .....+.|++|...       +.+.|+
T Consensus         9 ~~t~~~e~PW~v~i~~~~~-----~~~~~~C~GtLIs~~~VLTAAhCv~~~--~~~~~~~v~~g~~~-------~~~~v~   74 (287)
T d1rrka1           9 KGTDYHKQPWQAKISVIRP-----SKGHESCMGAVVSEYFVLTAAHCFTVD--DKEHSIKVSVGGEK-------RDLEIE   74 (287)
T ss_dssp             TCCHHHHSTTEEEEEECC-------CCCEEEEEEECSSSEEEECGGGCCTT--CCGGGEEEEETTCS-------SCEEEE
T ss_pred             CCCCcCCCCCEEEEEEEEC-----CCCcEEEEEEEecCCEEEEChhheecC--CCcceEEEEeCCee-------ceeeeE
Confidence            4567889999999987543     234589999999999999999999652  22345778888643       347899


Q ss_pred             eeEeCCCCCCC---------CCCCCeEEEEeCCCCCCCCCccccccCCCCCccccc--cCCCceEEEEeccCCCC-----
Q psy2626         192 RPIIHEQYTSA---------RKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSEL--FERKTPFVAGWGSTVFR-----  255 (355)
Q Consensus       192 ~i~~hp~y~~~---------~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~--~~~~~~~v~GwG~~~~~-----  255 (355)
                      ++++||+|+..         .+.||||||||++|+.|+++|+|||||.........  .....+...+|+.....     
T Consensus        75 ~i~~Hp~y~~~~~~~~~~~~~~~~DIALl~L~~~~~~s~~v~PIcLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (287)
T d1rrka1          75 VVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKAL  154 (287)
T ss_dssp             EEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEE
T ss_pred             EEEecCCccccccccccCCCcccccEEEEecccCccccceEEEEecCCccccccccccCCcceEeecCceeecCCCcccc
Confidence            99999999743         345899999999999999999999999654211111  11111112222222110     


Q ss_pred             --CCCCccceEEEEeeeChhHHH---hhhhc---------CCCCCCCCeEEecccC--CCCCCCcCCCCCcceeeeCCeE
Q psy2626         256 --GPLSPKLRHVQISVVDNPKCR---QIFSN---------YGATINENILCAGVLS--GGKDSCGGDSGGPLMYPLDTKY  319 (355)
Q Consensus       256 --~~~~~~l~~~~~~~~~~~~C~---~~~~~---------~~~~~~~~~~Ca~~~~--~~~~~C~GDsGgPL~~~~~~~~  319 (355)
                        ......++...+.+.+...|.   .....         ....++++||||+...  .+.++|.|||||||++..+++|
T Consensus       155 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~~~C~GDSGgPL~~~~~~~~  234 (287)
T d1rrka1         155 FVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRF  234 (287)
T ss_dssp             EEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEETTEE
T ss_pred             ccccCCceeEEEEEEEeccchhhhhhhhhhccccccccccccccccCCceEecccCCCcCCCCCCCCccCCeEEecCCeE
Confidence              124556777777777655543   22111         1235678999997544  2467899999999999999999


Q ss_pred             EEEEEEEeCCC--CCC--------CCCCcEEEeCcccHHHHHhHhC
Q psy2626         320 YIIGVVSYGKK--CAE--------VGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       320 ~lvGI~S~g~~--C~~--------~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      +|+||+|||..  |..        ...|.|||||+.|++||+++|+
T Consensus       235 ~lvGI~S~G~~~~~~~~~~~~~~~~~~~~vyt~V~~y~~WI~~~i~  280 (287)
T d1rrka1         235 IQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ  280 (287)
T ss_dssp             EEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTT
T ss_pred             EEEEEEEecCCcCcCCCCCCCcCCCCCCcEEEEHHHHHHHHHHHhc
Confidence            99999999854  322        2458899999999999999985

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=100.00  E-value=9.7e-45  Score=317.98  Aligned_cols=223  Identities=31%  Similarity=0.548  Sum_probs=178.2

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVS  187 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~  187 (355)
                      |+||++|..+||||||+|.+..         .++|+|+||+++||||||||+....     ...+.+.............
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~---------~~~C~G~LIs~~~VLTaAhCv~~~~-----~~~~~~~~~~~~~~~~~~~   66 (234)
T d1op0a_           1 VIGGNECDINEHRFLVAFFNTT---------GFFCGGTLINPEWVVTAAHCDSTDF-----QMQLGVHSKKVLNEDEQTR   66 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEEETT---------EEEEEEEEEETTEEEECGGGCCSSC-----EEEESCSCSSSCCTTCEEE
T ss_pred             CCCCEECCCCCcCcEEEEEECC---------cEEEEEEEEcCCEEEECceeCCCCC-----ccccceeeccccCCcceee
Confidence            7899999999999999997532         4899999999999999999996521     1222222222222233344


Q ss_pred             EEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCC-CCCccceEEE
Q psy2626         188 IEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRHVQ  266 (355)
Q Consensus       188 ~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~-~~~~~l~~~~  266 (355)
                      ..++..+.|+.|+.....+|||||||++|+.|+++++|+|||...     ...+..++++||+...... .....++...
T Consensus        67 ~~~~~~~~~~~~~~~~~~~DiaLl~L~~~v~~~~~i~picl~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  141 (234)
T d1op0a_          67 NPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLSLPSSP-----PSVGSVCRIMGWGSITPVKETFPDVPYCAN  141 (234)
T ss_dssp             CEEEEEECTTCCTTCTTSSCCEEEEESSCCCCBTTBCCCCCCSSC-----CCTTCEEEEEESSCSSSSSCCCCSSCEEEE
T ss_pred             eeeeeccccccccccccchhhhhhhcCCceeccceeecccccccC-----cccceEEEEeeecccccccccccccccccc
Confidence            456678889999999999999999999999999999999999654     2467889999999776433 3566789999


Q ss_pred             EeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEeCcc
Q psy2626         267 ISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTN  345 (355)
Q Consensus       267 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~V~~  345 (355)
                      +.+++...|...+...  .....++|.....+..+.|.||+||||++.    ++|+||+|||.. |+....|++||||+.
T Consensus       142 ~~~~~~~~C~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~G~Pl~~~----~~l~Gi~S~g~~~c~~~~~p~vft~v~~  215 (234)
T d1op0a_         142 INLLDHAVCQAGYPEL--LAEYRTLCAGIVQGGKDTCGGDSGGPLICN----GQFQGIVSYGAHPCGQGPKPGIYTNVFD  215 (234)
T ss_dssp             EEEECHHHHHHHCTTC--CTTSCEEEEECTTCCCBCCTTCTTCEEEET----TEEEEEEEECCSSTTCTTSCEEEEESGG
T ss_pred             ceEechHHhcccccCc--ceeeeeeeecccccccccccCCCCceEEEc----CEEEEEEEEcCCCCCCCCCCeEEEEHHH
Confidence            9999999999887642  344556666665667889999999999974    489999999876 888888999999999


Q ss_pred             cHHHHHhHhC
Q psy2626         346 YIQWIADNIS  355 (355)
Q Consensus       346 y~~WI~~~i~  355 (355)
                      |++||+++|+
T Consensus       216 y~~WI~~~i~  225 (234)
T d1op0a_         216 YTDWIQRNIA  225 (234)
T ss_dssp             GHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999983

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.9e-45  Score=317.82  Aligned_cols=222  Identities=33%  Similarity=0.640  Sum_probs=182.3

Q ss_pred             CccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC---CCcEEEEEeeeE
Q psy2626         118 QWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT---SSGVSIEIERPI  194 (355)
Q Consensus       118 e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~---~~~~~~~v~~i~  194 (355)
                      .|||||+|+++.     ++...++|+||||+++||||||||+...     ....+++|.......   ...+.+.|.+++
T Consensus         1 ~~PW~v~l~~~~-----~~~~~~~C~GtLIs~~~VLTaAhCv~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~   70 (232)
T d1fona_           1 SWSWQVSLQYEK-----DGAFHHTCGGSLIAPDWVVTAGHCISTS-----RTYQVVLGEYDRSVLEGSEQVIPINAGDLF   70 (232)
T ss_dssp             CEEEEEEEEEEE-----TTEEEEEECCEEEETTEEEECGGGCCTT-----SCEEEEEEEEETTEEEEEEEEEEECTTSEE
T ss_pred             CCccEEEEEEeC-----CCceEEEEEEEEecCCEEEEChhhccCC-----CceEEEEEeccccccccccccccceeEEEE
Confidence            499999998864     3445689999999999999999999752     235566665544322   234566799999


Q ss_pred             eCCCCCCCCCC--CCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeCh
Q psy2626         195 IHEQYTSARKL--NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDN  272 (355)
Q Consensus       195 ~hp~y~~~~~~--~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~  272 (355)
                      +||+|+.....  +|||||+|++++.++++++|||||....   ....+..+++.||+.....+..+..++...+++++.
T Consensus        71 ~hp~~~~~~~~~~~diAll~l~~~~~~~~~~~pic~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
T d1fona_          71 VHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGD---ILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDY  147 (232)
T ss_dssp             ECTTCCTTCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTC---CCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECH
T ss_pred             EccCccccccccccceeeeecccceEEeecceeeecCcccc---cCCCCceeEeeccccccCCCCCCCcceEEEEEEEcH
Confidence            99999876544  9999999999999999999999997764   345677889999999887776788999999999999


Q ss_pred             hHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeee-CCeEEEEEEEEeCCC--CCCCCCCcEEEeCcccHHH
Q psy2626         273 PKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGKK--CAEVGFPGVYTRVTNYIQW  349 (355)
Q Consensus       273 ~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-~~~~~lvGI~S~g~~--C~~~~~p~vyt~V~~y~~W  349 (355)
                      +.|.+.+.. ...+...++|+...  +...|.|||||||++.. +++|+|+||+|++..  |+..+.|++||||++|++|
T Consensus       148 ~~~~~~~~~-~~~~~~~~~c~~~~--~~~~~~gdsGgpl~~~~~~~~~~L~Gi~s~~~~~~c~~~~~p~vyt~V~~y~~W  224 (232)
T d1fona_         148 EHCSQWDWW-GITVKKTMVCAGGD--TRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDW  224 (232)
T ss_dssp             HHHTSTTTT-GGGCCTTEEEECCS--SSCSTTSCTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHH
T ss_pred             HHhhhhhcc-Cceeeeceeeeccc--cccccccCCCCceEEEccCCCEEEEEEEEEcCCCCCCCCCCCEEEEEHHHHHHH
Confidence            999886543 24577889998753  56789999999999865 578999999999865  8877889999999999999


Q ss_pred             HHhHhC
Q psy2626         350 IADNIS  355 (355)
Q Consensus       350 I~~~i~  355 (355)
                      |+++|+
T Consensus       225 I~~~i~  230 (232)
T d1fona_         225 IDETIA  230 (232)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999984

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=2.3e-44  Score=315.86  Aligned_cols=220  Identities=29%  Similarity=0.534  Sum_probs=177.4

Q ss_pred             eecCeecCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccC-CCCcE
Q psy2626         108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLED-TSSGV  186 (355)
Q Consensus       108 i~gG~~a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~-~~~~~  186 (355)
                      |+||.+++++||||+|.|.+..         .++|+||||+++||||||||+.+.       ............ .....
T Consensus         1 i~gG~~~~~~e~Pw~v~i~~~~---------~~~C~GtLIs~~~VLTaAhCv~~~-------~~~~~~~~~~~~~~~~~~   64 (237)
T d1gvza_           1 IIGGWECEKHSKPWQVAVYHQG---------HFQCGGVLVHPQWVLTAAHCMSDD-------YQIWLGRHNLSKDEDTAQ   64 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEETT---------EEEEEEEEEETTEEEECGGGCCSS-------CEEEESCSBTTSCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEECC---------eEEEEEEEEeCCEEEeChhhccCC-------CceeEeeeeeccccCcce
Confidence            7899999999999999997642         489999999999999999999752       122233333322 23456


Q ss_pred             EEEEeeeEeCCCCCCC-----------CCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCC
Q psy2626         187 SIEIERPIIHEQYTSA-----------RKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFR  255 (355)
Q Consensus       187 ~~~v~~i~~hp~y~~~-----------~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~  255 (355)
                      ...+...+.|+.|+..           ...+|||||||++|+.|+++++|+|||...     ...+..+++.|||.....
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diali~L~~pv~~~~~v~p~~l~~~~-----~~~~~~~~~~g~g~~~~~  139 (237)
T d1gvza_          65 FHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQE-----PKLGSTCYTSGWGLISTF  139 (237)
T ss_dssp             EECEEEEEECTTSCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSC-----CCTTCEEEEEEEECSCTT
T ss_pred             eeeeeeEEeeeeeeeeeeecccccCccccccceEEEEECCceecccccccccccccc-----cccceeEEEEeeeeeccc
Confidence            7778888888887532           245899999999999999999999999654     345678899999987543


Q ss_pred             C-CCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCC
Q psy2626         256 G-PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAE  333 (355)
Q Consensus       256 ~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~  333 (355)
                      . ..+..|++..+++++.+.|...+..   ...+.++|.....+..+.|.||+||||++.    ++|+||+|||.. |+.
T Consensus       140 ~~~~~~~l~~~~~~~~~~~~C~~~~~~---~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~----~~l~Gv~s~g~~~c~~  212 (237)
T d1gvza_         140 TNRGSGTLQCVELRLQSNEKCARAYPE---KMTEFVLCATHRDDSGSICLGDSGGALICD----GVFQGITSWGYSECAD  212 (237)
T ss_dssp             TCSEEEEEEEEEEEEECGGGGCSSCGG---GCCTTEEEEECSSTTCEECGGGTTCEEEET----TEEEEEECCCSSSCEE
T ss_pred             cccccceeeEEEEEeecHHHHHhhccc---ccccccccceecccccccccCCCCCcEEEc----CEEEEEEEeccCCCCC
Confidence            3 3456789999999999999988765   456777887766667889999999999984    489999999986 777


Q ss_pred             CCCCcEEEeCcccHHHHHhHhC
Q psy2626         334 VGFPGVYTRVTNYIQWIADNIS  355 (355)
Q Consensus       334 ~~~p~vyt~V~~y~~WI~~~i~  355 (355)
                      .+.|.+||||++|++||+++|+
T Consensus       213 ~~~p~v~t~v~~y~~WI~~~i~  234 (237)
T d1gvza_         213 FNDNFVFTKVMPHKKWIKETIE  234 (237)
T ss_dssp             TTTSCCEEESGGGHHHHHHHHH
T ss_pred             CCCCeEEEEHHHHHHHHHHHHH
Confidence            7889999999999999999984

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-43  Score=307.04  Aligned_cols=211  Identities=30%  Similarity=0.587  Sum_probs=154.7

Q ss_pred             CCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCC-CcEEEEEe----
Q psy2626         117 GQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTS-SGVSIEIE----  191 (355)
Q Consensus       117 ~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~-~~~~~~v~----  191 (355)
                      +.+||||+|++..         .++|+||||+++||||||||+.+       ...+++|...+.... ..+...+.    
T Consensus         1 ~~~Pw~v~i~~~~---------~~~C~GtLIs~~~VLTaAhCv~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   64 (228)
T d1sgfa_           1 NSQPWHVAVYRFN---------KYQCGGVLLDRNWVLTAAHCYND-------KYQVWLGKNNFLEDEPSDQHRLVSKAIP   64 (228)
T ss_dssp             CCCTTEEEEECTT---------SCCEEEEECSSSEEEECGGGCCS-------CCEEEECC----C-CTTCEEEEEEEEEE
T ss_pred             CCCCcEEEEEECC---------cEEEEEEEEcCCEEEeCHHHccC-------CceEEEeeeeeccccccceeeeeeeecc
Confidence            3689999997532         47899999999999999999975       245777776654432 22233332    


Q ss_pred             -------eeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCC-CCCCccce
Q psy2626         192 -------RPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFR-GPLSPKLR  263 (355)
Q Consensus       192 -------~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~-~~~~~~l~  263 (355)
                             .+..|+.|+.....+|||||+|++|+.|+++++|||||....     .....+++.|||.+... ...+..|+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~Diall~L~~~v~~~~~v~pi~l~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~l~  139 (228)
T d1sgfa_          65 HPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEP-----KLGSTCLASGWGSTTPIKFKYPDDLQ  139 (228)
T ss_dssp             CTTSCGGGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSCC-----CTTCEEEEC-------C---------
T ss_pred             ccceeeeeecccCCCCccccccceeEEeeccccccCCceeeEecCcccc-----ccCcceEEEeeeeccCCccCCCCccE
Confidence                   256899999999999999999999999999999999997653     35567888999877543 34567789


Q ss_pred             EEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCCCCCcEEEe
Q psy2626         264 HVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTR  342 (355)
Q Consensus       264 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~~~p~vyt~  342 (355)
                      ...+.+++.+.|+..+..   ...+.++|++...+....|.||+||||++.    ++|+||+|+|.. |+..+.|++|||
T Consensus       140 ~~~~~~~~~~~C~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~G~pl~~~----~~l~Gv~S~g~~~c~~~~~p~vyt~  212 (228)
T d1sgfa_         140 CVNLKLLPNEDCDKAHEM---KVTDAMLCAGEMDGGSYTCEHDSGGPLICD----GILQGITSWGPEPCGEPTEPSVYTK  212 (228)
T ss_dssp             CEEEEEECTHHHHTTCSS---BCCTTEEEEEECSSSEEECCCCTTCEEEET----TEEEEEECCCCSSCCCSSCCEEEEE
T ss_pred             EEEEEEeCHHHhhhhccC---CcccceEEeccCCCCccccCCCcCCcEEEe----CEEEEEEEECCCCCCCCCCCeEEEE
Confidence            999999999999887653   456788999877767889999999999984    499999999975 888889999999


Q ss_pred             CcccHHHHHhHhC
Q psy2626         343 VTNYIQWIADNIS  355 (355)
Q Consensus       343 V~~y~~WI~~~i~  355 (355)
                      |++|++||+++|+
T Consensus       213 V~~~~~WI~~~i~  225 (228)
T d1sgfa_         213 LIKFSSWIRETMA  225 (228)
T ss_dssp             SGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999984

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=99.94  E-value=1e-29  Score=218.64  Aligned_cols=198  Identities=18%  Similarity=0.202  Sum_probs=132.5

Q ss_pred             CCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCC-cCceEEEeccccccCCCCcEEEEEeeeE
Q psy2626         116 RGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE-YEPYIVHVGSIDLEDTSSGVSIEIERPI  194 (355)
Q Consensus       116 ~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~-~~~~~v~~G~~~~~~~~~~~~~~v~~i~  194 (355)
                      ...|||.+.++....        .+.|+|+||+++||||||||+....... .....+.++..+..  .......+.+++
T Consensus        14 ~~~~P~~~~~~i~~~--------~~~CsG~LI~~~~VLTaaHCv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   83 (215)
T d1p3ca_          14 TRVAPYNSIAYITFG--------GSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDST--AVNGSANMTEFY   83 (215)
T ss_dssp             TTSTTGGGEEEEECS--------SCEEEEEEEETTEEEECHHHHEETTTTEECCCCEEEETCBTTB--CTTCCEEEEEEE
T ss_pred             CCCCCcEEEEEEEcC--------CeEEEEEEEeCCEEEECcceeccCCCCceeeeEEEeccccCCC--CCceeEEEeEEE
Confidence            567999887765432        3579999999999999999997632221 12345666655443  234567899999


Q ss_pred             eCCCCCC-CCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChh
Q psy2626         195 IHEQYTS-ARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNP  273 (355)
Q Consensus       195 ~hp~y~~-~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~  273 (355)
                      .||.|.. ....+|||||||+.++.+  ...+++++...     ...+..+++.||+...........+.......... 
T Consensus        84 ~~~~~~~~~~~~~DiAll~l~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-  155 (215)
T d1p3ca_          84 VPSGYINTGASQYDFAVIKTDTNIGN--TVGYRSIRQVT-----NLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTRE-  155 (215)
T ss_dssp             CCHHHHHHCCGGGCCEEEEESSCHHH--HHCCCCBCCCS-----CCTTCEEEEEECCHHHHHHHSSCCCEEEEEECCEE-
T ss_pred             EecccccCCCccceEEEEEeccCCCc--ccccccccccc-----ccCCceeEEEcCCCCcCCCcccceeeEeeeccccc-
Confidence            9999865 345589999999998764  34455555433     35678899999986532221111222222111110 


Q ss_pred             HHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCC-CCCCcEEEeCcccHHHHHh
Q psy2626         274 KCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAE-VGFPGVYTRVTNYIQWIAD  352 (355)
Q Consensus       274 ~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~-~~~p~vyt~V~~y~~WI~~  352 (355)
                                   ... .+.    ...++|.|||||||+.   ..++|+||+|+|..|+. ...|.+|++|.+|++||++
T Consensus       156 -------------~~~-~~~----~~~~~~~G~SGgPl~~---~~~~lvGi~s~g~~~~~~~~~~~i~~~v~~~i~wi~~  214 (215)
T d1p3ca_         156 -------------DTN-LAY----YTIDTFSGNSGSAMLD---QNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             -------------CSS-EEE----ECCCCCTTCTTCEEEC---TTSCEEEECCEEEGGGTEEEEEBCCHHHHHHHHHHHT
T ss_pred             -------------ccc-cce----eecccCCCCccCeEEC---CCCEEEEEEEeccCCCCCCCCeEEEeEHHHHHHHHHc
Confidence                         011 111    1467899999999993   45689999999988653 3347899999999999986

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=99.93  E-value=2.7e-28  Score=216.64  Aligned_cols=197  Identities=18%  Similarity=0.180  Sum_probs=107.9

Q ss_pred             CceeeeEEEEe------CCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEE
Q psy2626         138 PEWMCGGALIT------KRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALF  211 (355)
Q Consensus       138 ~~~~C~GtLIs------~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl  211 (355)
                      ..++||||||+      ++||||||||+.+..   .....++++.......  .....+.+..+|+.|+.....+|++|+
T Consensus        32 g~~~CGGsLI~~~~~~~~~~VLTAAHCv~~~~---~~~~~v~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~  106 (263)
T d1arba_          32 GTLACTGSLVNNTANDRKMYFLTAHHCGMGTA---STAASIVVYWNYQNST--CRAPNTPASGANGDGSMSQTQSGSTVK  106 (263)
T ss_dssp             TEEEEEEEEBCCTTCCCCCEEEEEGGGSCCSH---HHHHTCEEEESCCCSS--CCCTTSGGGGSCCCCCCCCEEECEEEE
T ss_pred             CcEEEEEEEECCCCCCccceEEEchhhCCCCC---CcceEEEEEEEeeccc--ceeeeeeeeecccCccceeeecchhee
Confidence            36899999998      679999999997521   1222344443332221  122334556677777665544444444


Q ss_pred             EeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccce--EEEEeeeChhHHHhhhhcCCCCCCCC
Q psy2626         212 RLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLR--HVQISVVDNPKCRQIFSNYGATINEN  289 (355)
Q Consensus       212 ~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~--~~~~~~~~~~~C~~~~~~~~~~~~~~  289 (355)
                      ++..+..+.    .+-|+.      ...........+|+...........+.  ...+..+....|......+...+...
T Consensus       107 ~~~~~~Dia----ll~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (263)
T d1arba_         107 ATYATSDFT----LLELNN------AANPAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTT  176 (263)
T ss_dssp             EEETTTTEE----EEEESS------CCCGGGCCEEBCEECCSCCCSCEEEEECGGGCSCEEEEECSCCEEECTTSSSCSS
T ss_pred             ecCCCccee----eeeccc------ccccccceeeeccCccccCCccccceeccccceeeeecccccchhhccCCCCCcc
Confidence            444332211    111110      011112234445544332211110000  00111122223333333333466788


Q ss_pred             eEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CC--CCCCCcEEEeCcccHHHHHh
Q psy2626         290 ILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CA--EVGFPGVYTRVTNYIQWIAD  352 (355)
Q Consensus       290 ~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~--~~~~p~vyt~V~~y~~WI~~  352 (355)
                      ++|++...+..+.|.|||||||++..+   .++||+|+|.. |.  ..+.|++||||++|.+||..
T Consensus       177 ~~c~~~~~~~~~~c~GDSGGPL~~~~g---~~vGvvsgg~s~c~~c~~~~p~vYtrV~~~~~~~~~  239 (263)
T d1arba_         177 HLNVQWQPSGGVTEPGSSGSPIYSPEK---RVLGQLHGGPSSCSATGTNRSDQYGRVFTSWTGGGA  239 (263)
T ss_dssp             EEEEECCTTSCCCCTTCTTCEEECTTS---CEEEEEEECSCCTTCCGGGSEEEEEEHHHHHHTTSS
T ss_pred             EEEEEecCCCccccCCCCcceEEecCC---CEEEEEEEEEeCCcCCCCCCCceEEEEEEeeccCCc
Confidence            999988776788999999999997433   48888888854 42  23679999999998666644

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.79  E-value=6.1e-19  Score=150.88  Aligned_cols=199  Identities=14%  Similarity=0.195  Sum_probs=110.4

Q ss_pred             CCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeE
Q psy2626         115 ERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPI  194 (355)
Q Consensus       115 ~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~  194 (355)
                      ...++||.+..+....    .....+.|+|+||+++||||||||+.+... ......+............. ........
T Consensus        13 d~~~~p~~~v~~i~~~----~~~~~~~cTG~lI~~~~vLTAaHcv~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   86 (216)
T d2o8la1          13 DTTNGHYAPVTYIQVE----APTGTFIASGVVVGKDTLLTNKHVVDATHG-DPHALKAFPSAINQDNYPNG-GFTAEQIT   86 (216)
T ss_dssp             STTSGGGTTEEEEEEE----ETTEEEEEEEEEEETTEEEECHHHHHTTTT-CGGGEEEEETCCBTTBCTTC-CEEEEEEE
T ss_pred             CCCcCchheEEEEEEE----cCCCCEEEEEEEEeCCEEEEeeeeeccCCC-ceEEEEEEecccccceeeee-eEEeeeee
Confidence            3557888755444332    223357899999999999999999987332 22233333333322221111 12222222


Q ss_pred             eCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhH
Q psy2626         195 IHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPK  274 (355)
Q Consensus       195 ~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~  274 (355)
                      ..      ...+|+|||+|+.+........+...+.... ......+....+.||.....    ........-.+..   
T Consensus        87 ~~------~~~~D~all~l~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~g~~~~~~----~~~~~~~~~~~~~---  152 (216)
T d2o8la1          87 KY------SGEGDLAIVKFSPNEQNKHIGEVVKPATMSN-NAETQTNQNITVTGYPGDKP----VATMWESKGKITY---  152 (216)
T ss_dssp             EC------SSSSCCEEEEECCCTTSCCTTTSSCCCEECC-CTTCCTTCEEEEEECCTTSS----TTCEEEEEEEEEE---
T ss_pred             cc------ccCCceEEEEecccccccccccceeeeeccc-cccccCCceeEEEEccCCCc----eeeEEEEeeEEEE---
Confidence            21      2237999999998876655444443332221 11334566678888874332    2222222222211   


Q ss_pred             HHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHhHh
Q psy2626         275 CRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI  354 (355)
Q Consensus       275 C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i  354 (355)
                                 ....++..     ..++|.|+|||||+-.   ...+|||+++|..+..  ..+++. .....+||+++|
T Consensus       153 -----------~~~~~l~~-----~~~~~~G~SGgPv~~~---~g~vVGI~s~g~~~~~--~~~v~~-~~~~~~~i~~~i  210 (216)
T d2o8la1         153 -----------LKGEAMQY-----DLSTTGGNSGSPVFNE---KNEVIGIHWGGVPNEF--NGAVFI-NENVRNFLKQNI  210 (216)
T ss_dssp             -----------EETTEEEE-----SCCCCTTCTTCEEECT---TSCEEEEEEEEETTTE--EEEEEC-CHHHHHHHHHHC
T ss_pred             -----------ccCCeEEE-----ecCcCCCCCCCcEECC---CCEEEEEEeeecCCCC--cceEec-CHHHHHHHHHhh
Confidence                       12223322     4578999999999832   2369999999865332  123332 246789999988


Q ss_pred             C
Q psy2626         355 S  355 (355)
Q Consensus       355 ~  355 (355)
                      +
T Consensus       211 ~  211 (216)
T d2o8la1         211 E  211 (216)
T ss_dssp             T
T ss_pred             h
Confidence            5

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.73  E-value=1.1e-17  Score=145.51  Aligned_cols=176  Identities=16%  Similarity=0.141  Sum_probs=103.2

Q ss_pred             cCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCC---CCcEEEEE
Q psy2626         114 SERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDT---SSGVSIEI  190 (355)
Q Consensus       114 a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~---~~~~~~~v  190 (355)
                      ....+|||.+.......       ....|+|+||++++|||||||+...... .....+..+.......   .....+.+
T Consensus        36 ~~~~~~p~~~v~~i~~~-------g~~~gTG~lI~~~~ILTa~Hvv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (242)
T d1agja_          36 KDRQKYPYNTIGNVFVK-------GQTSATGVLIGKNTVLTNRHIAKFANGD-PSKVSFRPSINTDDNGNTETPYGEYEV  107 (242)
T ss_dssp             TGGGSTTGGGEEEEEET-------TTEEEEEEECSSSEEEECHHHHGGGTTC-GGGEEEEETCEECTTSCEECTTCCEEE
T ss_pred             cccccCCcccEEEEEeC-------CCccEEEEEEeCCEEEEcccEeccCCCc-eEEEEEeecceecccceeeeccceEEE
Confidence            44567888865433321       2367999999999999999999752221 1122222221111111   22234566


Q ss_pred             eeeEeCCCCCCCCCCCCeEEEEeCCCCCC---CCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEE
Q psy2626         191 ERPIIHEQYTSARKLNDIALFRLREDAPL---SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI  267 (355)
Q Consensus       191 ~~i~~hp~y~~~~~~~DIALl~L~~~v~~---~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~  267 (355)
                      ..+..+|.    ...+|||||+|+.+...   .+.+.|+.|....    ....++.++++||....    ....+.....
T Consensus       108 ~~~~~~~~----~~~~D~All~l~~~~~~~~~~~~~~~~~l~~s~----~~~~G~~v~~~GyP~~~----~~~~~~~~~~  175 (242)
T d1agja_         108 KEILQEPF----GAGVDLALIRLKPDQNGVSLGDKISPAKIGTSN----DLKDGDKLELIGYPFDH----KVNQMHRSEI  175 (242)
T ss_dssp             EEEESCTT----CTTSCCEEEEECCCTTSCCHHHHSCCCEECCST----TCCTTCEEEEEECCTTT----STTCCEEEEE
T ss_pred             EEEeeecC----CCcCcEEEEEeccccccccccccCcceeecccc----cccCCcEEEEEEcCCCC----ccceeEeccc
Confidence            66665553    23479999999876543   2457788886543    34578889999996432    1222233333


Q ss_pred             eeeChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCC
Q psy2626         268 SVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA  332 (355)
Q Consensus       268 ~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~  332 (355)
                      .+....               ..+..     ..+++.|+|||||+-   ..+.||||++++..+.
T Consensus       176 ~~~~~~---------------~~~~~-----~~~~~~G~SGgPl~~---~~g~vVGI~~~~~~~~  217 (242)
T d1agja_         176 ELTTLS---------------RGLRY-----YGFTVPGNSGSGIFN---SNGELVGIHSSKVSHL  217 (242)
T ss_dssp             EECCGG---------------GSEEE-----ECCCCGGGTTCEEEC---TTSEEEEEEEEEEECS
T ss_pred             cccccc---------------ccEEE-----ecccCCccCCCcEEC---CCCeEEEEEeEeecCC
Confidence            222111               11221     346788999999984   2346999999886644

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=99.68  E-value=3e-17  Score=136.57  Aligned_cols=167  Identities=16%  Similarity=0.181  Sum_probs=97.1

Q ss_pred             ceeee-EEEE---eCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeC
Q psy2626         139 EWMCG-GALI---TKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLR  214 (355)
Q Consensus       139 ~~~C~-GtLI---s~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~  214 (355)
                      .+.|+ |.++   +.+||||||||+...       ..+.+.       ...+.+.+.....||.       +|+|+++++
T Consensus        11 ~~~Ct~Gf~v~~~g~~~ilTAaHCv~~~-------~~~~~~-------~~~~~~~~~~~~~~~~-------~D~a~~~~~   69 (187)
T d1hpga_          11 GSRCSAAFNVTKGGARYFVTAGHCTNIS-------ANWSAS-------SGGSVVGVREGTSFPT-------NDYGIVRYT   69 (187)
T ss_dssp             TEEEECCEEEEETTEEEEEECHHHHTTC-------SEEESS-------TTCCEEEEEEEEECSB-------SCEEEEEEC
T ss_pred             CCeEeeeEEEEcCCCcEEEEchhcCCCC-------CeeEEC-------CCCEEEEEEEeecccC-------Cchhheecc
Confidence            36798 7877   457999999999751       112221       2345667777788876       599999998


Q ss_pred             CCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhc-CCCCCCCCeEEe
Q psy2626         215 EDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN-YGATINENILCA  293 (355)
Q Consensus       215 ~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-~~~~~~~~~~Ca  293 (355)
                      .+......+.+.             ......+.||.......+    +.   ........+...... ..........|.
T Consensus        70 ~~~~~~~~~~~~-------------~~~~~~~~g~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (187)
T d1hpga_          70 DGSSPAGTVDLY-------------NGSTQDISSAANAVVGQA----IK---KSGSTTKVTSGTVTAVNVTVNYGDGPVY  129 (187)
T ss_dssp             SSCCCCSEEECS-------------SSCEEECCEECCCCTTCE----EE---EEETTTEEEEEEEEEEEEEEEETTEEEE
T ss_pred             cCcccceeEecC-------------CCcccccccceeeecccc----cc---ccccceeeeeeeeeeccccEEcCCccEe
Confidence            877644433221             112223345543322110    00   000000000000000 000112233444


Q ss_pred             cccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHH
Q psy2626         294 GVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI  350 (355)
Q Consensus       294 ~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI  350 (355)
                      .....+..+|.|||||||+...    .++||+|+|..|+....+.+|++|..++.+.
T Consensus       130 ~~~~~~~~~~~GDSGgPl~~~~----~~vGi~s~g~~~~~~~~~~~~~pv~~~l~~~  182 (187)
T d1hpga_         130 NMVRTTACSAGGDSGGAHFAGS----VALGIHSGSSGCSGTAGSAIHQPVTEALSAY  182 (187)
T ss_dssp             EEEEECCCCCTTCTTCEEEETT----EEEEEEEEESCCBTTBCCCEEEEHHHHHHHH
T ss_pred             ccEEcCcccccCCCCCeEEECC----EEEEEEEEEecCCCCCCCEEEEEHHHHHHHh
Confidence            3333367899999999999732    6999999999977777789999999998764

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.40  E-value=1.7e-12  Score=112.48  Aligned_cols=198  Identities=13%  Similarity=0.101  Sum_probs=106.8

Q ss_pred             cCCCCccceEEeceeeeccccCCCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccC----CCCcEEEE
Q psy2626         114 SERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLED----TSSGVSIE  189 (355)
Q Consensus       114 a~~~e~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~----~~~~~~~~  189 (355)
                      ....++||-+.......       ...+|+|+||++++||||+||+.+... ......+..+......    ......+.
T Consensus        29 ~d~~~~p~~~v~~i~~~-------g~~~GTGflI~~~~ILTa~HVv~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~  100 (246)
T d1qtfa_          29 TDNARSPYNSVGTVFVK-------GSTLATGVLIGKNTIVTNYHVAREAAK-NPSNIIFTPAQNRDAEKNEFPTPYGKFE  100 (246)
T ss_dssp             SCCSSTTGGGEEEEEET-------TTEEEEEEEEETTEEEECHHHHGGGTT-CGGGEEEEETCCCCTTTTCCCCTTCCEE
T ss_pred             cccccCccccEEEEEeC-------CCceEEEEEEeCCeEEEchhecccCCc-ceEEEEEecCCcceeeeeeecCCCceEE
Confidence            44567888443322221       246899999999999999999975222 1223444554332211    12334455


Q ss_pred             EeeeEeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEee
Q psy2626         190 IERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISV  269 (355)
Q Consensus       190 v~~i~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~  269 (355)
                      +..+..++.    ....|+|||+|+..........++....... ......+...++.||.....    ...........
T Consensus       101 ~~~~~~~~~----~~~~DiAll~l~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~i~~~G~P~~~~----~~~~~~~~~~~  171 (246)
T d1qtfa_         101 AEEIKESPY----GQGLDLAIIKLKPNEKGESAGDLIQPANIPD-HIDIAKGDKYSLLGYPYNYS----AYSLYQSQIEM  171 (246)
T ss_dssp             EEEEESCTT----CTTSCCEEEEECCCTTSCCHHHHSCCCCCCS-SCCCCTTCEEEEEECCTTTS----TTCCEEEEEEE
T ss_pred             EEEEEecCC----cccCceEEEEeccccccccccccCceeeccc-cccccCCCEEEEEeCCCCCC----cceeeccceEe
Confidence            666655543    2236999999987765443333332221111 11345677788999965432    11122222222


Q ss_pred             eChhHHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC-CCCC-------CCCcEEE
Q psy2626         270 VDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEV-------GFPGVYT  341 (355)
Q Consensus       270 ~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~-C~~~-------~~p~vyt  341 (355)
                      .+                ..++       ..++..|+|||||+-.   ...||||.+.|.+ ....       ..-..|.
T Consensus       172 ~~----------------~~~~-------~~~~~~G~SGgPv~n~---~G~vVGI~~~g~~~~~~~~~~~~~~~~~~~~~  225 (246)
T d1qtfa_         172 FN----------------DSQY-------FGYTEVGNSGSGIFNL---KGELIGIHSGKGGQHNLPIGVFFNRKISSLYS  225 (246)
T ss_dssp             SS----------------SSBE-------ESCCCGGGTTCEEECT---TCCEEEEEEEEETTTTEEEEEETTCBCCTTTS
T ss_pred             CC----------------CceE-------EeeccCCCCCCcEECC---CCeEEEEEecccCCCCCccceEeecccchhhh
Confidence            11                0011       2356689999999932   3359999987654 2111       0112344


Q ss_pred             eCcccHHHHHhHh
Q psy2626         342 RVTNYIQWIADNI  354 (355)
Q Consensus       342 ~V~~y~~WI~~~i  354 (355)
                      ....|.+||.+.|
T Consensus       226 ~~~~~~~~~~~~~  238 (246)
T d1qtfa_         226 VDNTFGDTLGNDL  238 (246)
T ss_dssp             TTCCSSCBHHHHH
T ss_pred             hhHHHHHHHHHHh
Confidence            4556667776554

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=99.11  E-value=3.5e-11  Score=99.03  Aligned_cols=46  Identities=28%  Similarity=0.338  Sum_probs=35.8

Q ss_pred             CCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHH
Q psy2626         301 DSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI  350 (355)
Q Consensus       301 ~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI  350 (355)
                      .+.+|||||||+..  +  .++||++.|..+........|+.|+.+++++
T Consensus       131 ~~~~GdSGGPv~~~--~--~~vGi~sgg~~~~~~~~~~~~~pv~~~l~~~  176 (181)
T d2sgaa_         131 CAQPGDSGGSLFAG--S--TALGLTSGGSGNCRTGGTTFYQPVTEALSAY  176 (181)
T ss_dssp             CCCTTCTTCEEEET--T--EEEEEEEEEEEETTTEEEEEEEEHHHHHHHH
T ss_pred             eccCCCcCCeeEEC--C--EEEEEEEEecCCCCCCceEEEEEHHHHHHHh
Confidence            34589999999963  2  5899999998755444467999999888775

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=99.01  E-value=8.1e-10  Score=90.93  Aligned_cols=158  Identities=20%  Similarity=0.185  Sum_probs=78.4

Q ss_pred             eeee-EEEEe---CCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCC
Q psy2626         140 WMCG-GALIT---KRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRE  215 (355)
Q Consensus       140 ~~C~-GtLIs---~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~  215 (355)
                      ..|+ |..+.   .++|||||||+....       .+.+..      .....+.......||.       +|+||||++.
T Consensus        12 ~~CT~Gf~v~~~~~~~ilTA~Hcv~~~~-------~~~~~~------~~~~~~g~~~~~~~~~-------~D~All~~~~   71 (185)
T d2qaaa1          12 GRCSLGFNVRSGSTYYFLTAGHCTDGAT-------TWWANS------ARTTVLGTTSGSSFPN-------NDYGIVRYTN   71 (185)
T ss_dssp             CEEECCEEEEETTEEEEEECHHHHTTCC-------EEESST------TSCSEEEEEEEEECSB-------SCEEEEEECC
T ss_pred             CcEeeeEeEEECCccEEEECCCccCCCC-------EEEEEc------CCCeEeeeEEeccCCC-------CCeEEEEecc
Confidence            4698 88774   459999999997511       122221      1222333444445664       7999999987


Q ss_pred             CCCCCCCc-cccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEec
Q psy2626         216 DAPLSDLI-QPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAG  294 (355)
Q Consensus       216 ~v~~~~~v-~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~  294 (355)
                      +....... ...-+..    ......+......|+..-.    ...........+..              .....++.-
T Consensus        72 ~~~~~~~~~~~~~v~~----~~~~~~G~~v~~~G~~tg~----~~g~v~~~~~~~~~--------------~~~~~~~~~  129 (185)
T d2qaaa1          72 TTIPKDGTVGGQDITS----AANATVGMAVTRRGSTTGT----HSGSVTALNATVNY--------------GGGDVVYGM  129 (185)
T ss_dssp             SSSCCCSEETTEECCE----ECCCCTTCEEEEEETTTEE----EEEEEEEEEEEEEC--------------STTCEEEEE
T ss_pred             CCcccccccCceeccC----CCcCCCCCEEEEccCCCCc----ccceeEeeEEEEEc--------------CCCCeeeeE
Confidence            64432111 1111110    1123456666666653211    01111111111110              011111111


Q ss_pred             ccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCc
Q psy2626         295 VLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT  344 (355)
Q Consensus       295 ~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~  344 (355)
                      . ..+.....|||||||+..  +  .++||++.+..+......+.|+.|.
T Consensus       130 ~-~~~~~~~~GdSGGPv~~~--~--~~vGi~~~g~~~~~~~~~~~~~Pi~  174 (185)
T d2qaaa1         130 I-RTNVCAEPGDSGGPLYSG--T--RAIGLTSGGSGNCSSGGTTFFQPVT  174 (185)
T ss_dssp             E-EESCCCCTTCTTCEEEET--T--EEEEEEEEEEEETTTEEEEEEEEHH
T ss_pred             E-EEeeeecCCcccceeEEC--C--EEEEEEEEeecCCCCCceEEEEEHH
Confidence            1 112344579999999963  2  6999999987644333335566543

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=98.77  E-value=3.2e-09  Score=88.10  Aligned_cols=29  Identities=31%  Similarity=0.344  Sum_probs=22.6

Q ss_pred             CCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC
Q psy2626         299 GKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK  330 (355)
Q Consensus       299 ~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~  330 (355)
                      ....++||||||++...+   .++||+|.+..
T Consensus       135 ~~~~~~GdSGGPv~~~~g---~vvGI~sgg~~  163 (198)
T d2h5ca1         135 NACMGRGDSGGSWITSAG---QAQGVMSGGNV  163 (198)
T ss_dssp             CSCCBTTCTTCEEECTTC---BEEEEEEEECC
T ss_pred             eeeeecccccccEEcCCC---EEEEEEccccc
Confidence            456789999999996443   48999998654

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.76  E-value=2.3e-08  Score=84.38  Aligned_cols=169  Identities=16%  Similarity=0.149  Sum_probs=81.4

Q ss_pred             ccceEEeceeeeccccCCCCceeeeEEEEeCC-EEEeeccccCCCCC----CCcCceEEEeccccccCCCCcEEEEEeee
Q psy2626         119 WPWMAAIGFKIRRRRANGKPEWMCGGALITKR-YVLTAAHCVSPDTT----GEYEPYIVHVGSIDLEDTSSGVSIEIERP  193 (355)
Q Consensus       119 ~Pw~v~l~~~~~~~~~~~~~~~~C~GtLIs~~-~VLTAAhCv~~~~~----~~~~~~~v~~G~~~~~~~~~~~~~~v~~i  193 (355)
                      -|-+|.|....      +......+|.+|+++ +|||+||++.....    .......|++..        ...+..+-+
T Consensus        11 ~~svV~I~~~~------~~~~~~GSGfvi~~~G~IlTn~HVV~~~~~~~~~~~~~~i~v~~~d--------g~~~~a~vi   76 (221)
T d2z9ia2          11 VPSVVMLETDL------GRQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSD--------GRTAPFTVV   76 (221)
T ss_dssp             GGGEEEEEEEC----------CEEEEEECCTTSEEEECHHHHHHHHCCC------EEEEEETT--------SCEECCEEE
T ss_pred             CCcEEEEEecc------CCcCcceEEEEEECCCEEEEcHHHhhccccccccccCceEEEEcCC--------ceeeeeeeE
Confidence            36678875432      223457899999987 99999999854111    111123343321        123333333


Q ss_pred             EeCCCCCCCCCCCCeEEEEeCCCCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChh
Q psy2626         194 IIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNP  273 (355)
Q Consensus       194 ~~hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~  273 (355)
                      ...+.       .|||||++..+.....    ..+...    .....+...++.|+........................
T Consensus        77 ~~d~~-------~DlAll~~~~~~~~~~----~~~~~~----~~~~~g~~v~~~g~p~g~~~~~~~g~~~~~~~~~~~~~  141 (221)
T d2z9ia2          77 GADPT-------SDIAVVRVQGVSGLTP----ISLGSS----SDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTG  141 (221)
T ss_dssp             EEETT-------TTEEEEECCSCCSCCC----CEECCG----GGCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEEEC--
T ss_pred             eeccc-------cceeeeeeccccccee----eccccc----cccccCceeeeeeccCCCcccccccceeeccccccccc
Confidence            33332       6999999987654321    111111    13456778888887643211000001111111111111


Q ss_pred             HHHhhhhcCCCCCCCCeEEecccCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC
Q psy2626         274 KCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK  330 (355)
Q Consensus       274 ~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~  330 (355)
                      ......      ....++-.     ....-.|.|||||+-..+   .++||++....
T Consensus       142 ~~~~~~------~~~~~i~~-----~~~i~~G~SGGPv~n~~G---~vVGI~~~~~~  184 (221)
T d2z9ia2         142 EAGNQN------TVLDAIQT-----DAAINPGNSGGALVNMNA---QLVGVNSAIAT  184 (221)
T ss_dssp             -----C------CEEEEEEE-----CSCCCTTCTTEEEECTTS---EEEEEEEEECC
T ss_pred             cccccc------cccceEEE-----eecccCCCCCCccCcCCC---EEEEEEEEEec
Confidence            000000      00011111     344567999999995433   79999987654

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.63  E-value=3.1e-07  Score=77.64  Aligned_cols=171  Identities=15%  Similarity=0.147  Sum_probs=87.6

Q ss_pred             eeeeEEEEeCC-EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCC
Q psy2626         140 WMCGGALITKR-YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAP  218 (355)
Q Consensus       140 ~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~  218 (355)
                      ...+|.+|+++ ||||+||++...     ....|....        ...+..+-+...+.       .|+|||++..+- 
T Consensus        56 s~GSGfiI~~~G~IlTn~HVv~~~-----~~~~v~~~~--------~~~~~a~v~~~~~~-------~dlall~v~~~~-  114 (228)
T d1l1ja_          56 SLGSGFIFDPEGYILTNYHVVGGA-----DNITVTMLD--------GSKYDAEYIGGDEE-------LDIAVIKIKASD-  114 (228)
T ss_dssp             EEEEEEEEETTTEEEEEHHHHSSC-----SSCEEECTT--------SCEEEBCCCEEETT-------TTEEEEEBCCSS-
T ss_pred             cceEEEEeecCceEEeeccccccc-----ccceEEeec--------ceeEeEEEeeeccc-------ccceeeEeecCC-
Confidence            46899999976 999999999762     223343321        12222222223332       699999997542 


Q ss_pred             CCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCC
Q psy2626         219 LSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSG  298 (355)
Q Consensus       219 ~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~  298 (355)
                        ..+.++-|....    ....++..++.||.....     ...............-..    .+......++=.     
T Consensus       115 --~~~~~l~l~~s~----~~~~G~~V~aiG~P~g~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-----  174 (228)
T d1l1ja_         115 --KKFPYLEFGDSD----KVKIGEWAIAIGNPLGFQ-----HTVTVGVVSATNRRIPKP----DGSGYYVGLIQT-----  174 (228)
T ss_dssp             --SCCCCCEECCGG----GCCTTCEEEEEECTTSSS-----CEEEEEEEEEEEEEEECT----TSSCEEEEEEEE-----
T ss_pred             --CCCceEEccCcc----ccccCCcEEEEECCCCCC-----CceEeeeeeccccccccc----cCcCcccceeEE-----
Confidence              233444443222    345788899999854211     111111111111000000    000000011111     


Q ss_pred             CCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHhHh
Q psy2626         299 GKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI  354 (355)
Q Consensus       299 ~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i  354 (355)
                      +...-.|+|||||+-..+   .++||++....-.....-+....+.....+|++.|
T Consensus       175 da~i~~G~SGGPl~n~~G---~VIGI~~~~~~~~~~~~i~faIp~~~i~~~l~~l~  227 (228)
T d1l1ja_         175 DAAINPGNSGGPLLNIHG---EVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTIL  227 (228)
T ss_dssp             SSCCCTTTTTSEEECSSS---EEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGC
T ss_pred             ecccCCCCCCCcEECCCC---EEEEEEEEEecCCCCCCEEEEEEHHHHHHHHHHhc
Confidence            234557999999995443   69999986543111111233456666777777654

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.7e-07  Score=76.64  Aligned_cols=145  Identities=19%  Similarity=0.211  Sum_probs=75.0

Q ss_pred             eeeEEEEeCC-EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCCCC
Q psy2626         141 MCGGALITKR-YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPL  219 (355)
Q Consensus       141 ~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v~~  219 (355)
                      .-+|.+|+++ ||||+||++.+.     ....|+..        ....+..+-+..++.       .|+|||+++.+-. 
T Consensus        43 ~GSGf~i~~~G~IlT~~HVv~~~-----~~i~V~~~--------~g~~~~a~vv~~d~~-------~dlall~~~~~~~-  101 (205)
T d1lcya2          43 NGSGFVVAADGLIVTNAHVVADR-----RRVRVRLL--------SGDTYEAVVTAVDPV-------ADIATLRIQTKEP-  101 (205)
T ss_dssp             EEEEEEEETTTEEEECHHHHTTC-----SEEEEECT--------TSCEEEEEEEEEETT-------TTEEEEECCCSSC-
T ss_pred             ceEEEEEECCCeEEEechhhhhh-----hhcccccc--------ccccccceeeeeecc-------eeeEEEEecCCCC-
Confidence            5799999987 999999999752     22334332        122334444444443       6999999975433 


Q ss_pred             CCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccCCC
Q psy2626         220 SDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGG  299 (355)
Q Consensus       220 ~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~  299 (355)
                         +.++-|....    ....++..++.|+.......     .............-....    .......+-.     .
T Consensus       102 ---~~~l~l~~~~----~~~~G~~v~~iG~P~~~~~~-----~~~g~~~~~~~~~~~~~~----~~~~~~~i~~-----~  160 (205)
T d1lcya2         102 ---LPTLPLGRSA----DVRQGEFVVAMGSPFALQNT-----ITSGIVSSAQRPARDLGL----PQTNVEYIQT-----D  160 (205)
T ss_dssp             ---CCCCCBCCGG----GCCTTCEEEECCCTTSSSSC-----CEEEEBCSCSCC-------------CCCCEEE-----S
T ss_pred             ---CcEEEccccc----cCCCCCEEEEEECCcccCce-----EeeeEEEeccccccccCC----CCccceEEEE-----e
Confidence               3344443221    24567777777775332111     111111110000000000    0111222222     2


Q ss_pred             CCCCcCCCCCcceeeeCCeEEEEEEEEeCCC
Q psy2626         300 KDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK  330 (355)
Q Consensus       300 ~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~  330 (355)
                      ...-.|+|||||+-.. +  .|+||++.+..
T Consensus       161 ~~~~~G~SGGPv~d~~-G--~vVGI~s~~~~  188 (205)
T d1lcya2         161 AAIDFGNAGGPLVNLD-G--EVIGVNTMKVT  188 (205)
T ss_dssp             SCCSTTTTTSEEEETT-S--CEEEEEEEEEE
T ss_pred             eeeCCCCCcCcEECCC-C--EEEEEEeeEcc
Confidence            3344699999998543 2  59999987654

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=4.7e-07  Score=77.48  Aligned_cols=167  Identities=16%  Similarity=0.143  Sum_probs=90.0

Q ss_pred             eeeeEEEEeC--CEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCC
Q psy2626         140 WMCGGALITK--RYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDA  217 (355)
Q Consensus       140 ~~C~GtLIs~--~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v  217 (355)
                      ..-+|.+|++  .||||.+|.+.+.     ....|.+..        ...+..+-+...+.       .|+|||+++.+-
T Consensus        76 ~~GSG~iI~~~~g~IlTn~HVv~~~-----~~~~v~~~~--------~~~~~a~~~~~d~~-------~dlavl~i~~~~  135 (249)
T d1ky9a2          76 ALGSGVIIDADKGYVVTNNHVVDNA-----TVIKVQLSD--------GRKFDAKMVGKDPR-------SDIALIQIQNPK  135 (249)
T ss_dssp             EEEEEEEEETTTTEEEEEHHHHTTE-----EEEEEEETT--------SCEEEEEEEEEETT-------TTEEEEEESSCC
T ss_pred             ccccEEEEeccCceEEeeccccccc-----eeeeeeecc--------cccccceeeEeccc-------hhhceeeecccc
Confidence            4688999985  4999999999651     234444432        23445555555544       699999997653


Q ss_pred             CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccC
Q psy2626         218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS  297 (355)
Q Consensus       218 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~  297 (355)
                      .    +.|+.|....    ....++..++.|+-...     ........+.......-..       .....++=.    
T Consensus       136 ~----~~~~~l~~~~----~~~~G~~v~aiG~P~g~-----~~tvt~~~~~~~~~~~~~~-------~~~~~~iqt----  191 (249)
T d1ky9a2         136 N----LTAIKMADSD----ALRVGDYTVAIGNPFGL-----GETVTSGIVSALGRSGLNA-------ENYENFIQT----  191 (249)
T ss_dssp             S----CCCCCBCCGG----GCCTTCEEEEEECTTSS-----SCEEEEEEEEEESSCC------------CCCCEEE----
T ss_pred             c----ceEEEcCCcC----cCCcCCEEEEEeccccc-----CCceeecceeecccccccC-------ccccceEEE----
Confidence            3    4455554322    35578888888885321     1111222222221110000       011112211    


Q ss_pred             CCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCC-CCcEEEeCcccHHHHHhHh
Q psy2626         298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVG-FPGVYTRVTNYIQWIADNI  354 (355)
Q Consensus       298 ~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~-~p~vyt~V~~y~~WI~~~i  354 (355)
                       +...-.|.|||||+-..+   .|+||.+....-.... .-+.-.-+....+++.+.+
T Consensus       192 -da~i~~GnSGGPl~n~~G---~vIGI~t~~~~~~~~~~gi~faIP~~~~~~~~~~l~  245 (249)
T d1ky9a2         192 -DAAINRGNAGGALVNLNG---ELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMV  245 (249)
T ss_dssp             -SCCCTTSCCCSEEECTTS---CEEEEEECSSTTSCCCSSSEEEEEHHHHHHHHHHHH
T ss_pred             -eeeecCCCCCceEECCCC---EEEEEEEEEeccCCCcccEEEEEEHHHHHHHHHHHH
Confidence             345567999999985443   5999998765422111 1233344555556665544

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=2.4e-06  Score=71.01  Aligned_cols=144  Identities=18%  Similarity=0.235  Sum_probs=77.7

Q ss_pred             ceeeeEEEEeCC-EEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCCCC
Q psy2626         139 EWMCGGALITKR-YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDA  217 (355)
Q Consensus       139 ~~~C~GtLIs~~-~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~~v  217 (355)
                      ...-+|.+|+++ ||||++|.+...     ....|++..        ...+..+-+-.++.       +|+|||++..+.
T Consensus        35 ~s~GSGfvi~~~G~IlTn~HVV~~~-----~~i~v~~~~--------~~~~~~~~~~~~~~-------~Dlall~~~~~~   94 (210)
T d2qf3a1          35 RTLGSGVIMDQRGYIITNKHVINDA-----DQIIVALQD--------GRVFEALLVGSDSL-------TDLAVLKINATG   94 (210)
T ss_dssp             EEEEEEEECSTTCEEEEEHHHHTTC-----SEEEEECTT--------SCEEECEEEEEETT-------TTEEEEECCCSS
T ss_pred             ccceEEEEEECCceEEechhhcccc-----ccccccccc--------ccceeeEEeccccc-------cchhheeccccc
Confidence            346999999976 999999999651     234454421        22344444444444       799999997764


Q ss_pred             CCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecccC
Q psy2626         218 PLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS  297 (355)
Q Consensus       218 ~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~  297 (355)
                      .+.    +..+....    ....+...++.|+.....     .......+..........       .-...++-.    
T Consensus        95 ~~~----~~~~~~~~----~~~~g~~v~~~G~p~~~~-----~~~~~~~~~~~~~~~~~~-------~~~~~~i~~----  150 (210)
T d2qf3a1          95 GLP----TIPINARR----VPHIGDVVLAIGNPYNLG-----QTITQGIISATGRIGLNP-------TGRQNFLQT----  150 (210)
T ss_dssp             CCC----CCCCCTTC----CCCTTBEEEEEECGGGSS-----SEEEEEEEEESCC----------------CCEEE----
T ss_pred             ccc----cccccccc----ccccceEEEEeccccccc-----cccccccceeeeeeeecc-------ccceeEEEE----
Confidence            422    22222211    345677778888764321     111111111111111100       001122222    


Q ss_pred             CCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCC
Q psy2626         298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK  330 (355)
Q Consensus       298 ~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~  330 (355)
                       +...-.|.|||||+-..+   .|+||++.+..
T Consensus       151 -~a~i~~G~SGGPv~n~~G---~vVGI~~~~~~  179 (210)
T d2qf3a1         151 -DASINHGNSGGALVNSLG---ELMGINTLSFD  179 (210)
T ss_dssp             -CSCCCTTCTTCEEEETTC---CEEEEEEEEC-
T ss_pred             -eeeEEeccCCCceEeecC---EEEEEEEEEee
Confidence             334567999999996543   59999987654

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

Probab=98.18  E-value=6.8e-06  Score=67.47  Aligned_cols=177  Identities=14%  Similarity=0.158  Sum_probs=89.7

Q ss_pred             CCCceeeeEEEEeCCEEEeeccccCCCCCCCcCceEEEeccccccCCCCcEEEEEeeeEeCCCCCCCCCCCCeEEEEeCC
Q psy2626         136 GKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRE  215 (355)
Q Consensus       136 ~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~DIALl~L~~  215 (355)
                      +.....|.|..|..+++||++|-+...      ...+.++.......    .+.+.+.-...  .......|||||+|++
T Consensus        19 g~~~~~g~gl~v~g~~~l~~~H~~~~~------~~~i~~~~~~~~~~----~~~~~~~~~~v--~~~d~~~Dlall~l~~   86 (199)
T d2bhga1          19 GKTVAICCATGVFGTAYLVPRHLFAEK------YDKIMLDGRAMTDS----DYRVFEFEIKV--KGQDMLSDAALMVLHR   86 (199)
T ss_dssp             TEEEEEEEEEEEEBTEEEEEHHHHTSC------CSEEEETTEEECGG----GEEEECCEECC--SSSCEECSEEEEEESS
T ss_pred             CeEEEEeEEEEEECCEEEECCcEeecC------CCEEEEeeeEEEEE----eccceEEEEEE--EecCCCccEEEEEcCC
Confidence            334567999999999999999998641      11223322111110    11222111111  1112347999999987


Q ss_pred             CCCCCCCccccccCCCCCccccccCCCceEEEEeccCCCCCCCCccceEEEEeeeChhHHHhhhhcCCCCCCCCeEEecc
Q psy2626         216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGV  295 (355)
Q Consensus       216 ~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~  295 (355)
                      ...|.+...-  ++...    ....+....+.||....     ...+....+.  .   +.......+.....+.+-.  
T Consensus        87 ~~~~~~~~~~--~~~~~----~~~~g~~v~~ig~p~~~-----~~~~~~~~~~--~---~~~~~~~~~g~~~~~~~~y--  148 (199)
T d2bhga1          87 GNKVRDITKH--FRDTA----RMKKGTPVVGVVNNADV-----GRLIFSGEAL--T---YKDIVVSMDGDTMPGLFAY--  148 (199)
T ss_dssp             SCCBCCCGGG--BCSSC----EECTTCEEEEEEEETTT-----EEEEEEEEES--S---CEECCC-----CCTTEEEE--
T ss_pred             CCcCCccccc--ccccc----cccccceEEEEEcCCCC-----CceEEEEEEE--E---ecceeecCCCccccCEEEE--
Confidence            6554443322  22221    33456777788875321     1111111111  0   0000000001111233332  


Q ss_pred             cCCCCCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeCcccHHHHHh
Q psy2626         296 LSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIAD  352 (355)
Q Consensus       296 ~~~~~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V~~y~~WI~~  352 (355)
                         ...+-.|+|||||+...+....++||.+.|..    + -+..+.|  ..++|++
T Consensus       149 ---~a~t~~G~cGgplv~~~~~~~~IvGih~aG~~----g-~G~a~~i--t~e~i~~  195 (199)
T d2bhga1         149 ---KAATRAGYAGGAVLAKDGADTFIVGTHSAGGN----G-VGYCSCV--SRSMLQK  195 (199)
T ss_dssp             ---ECCCCTTCTTCEEEEEETTEEEEEEEEEEEET----T-EEEEEEC--CHHHHHH
T ss_pred             ---EeccCCCCcCCeEEEecCCeEEEEEEEeCCCC----C-EEEEEEc--cHHHHHH
Confidence               23345799999999887778889999998843    1 2444444  3466654

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=98.08  E-value=1.4e-05  Score=66.54  Aligned_cols=49  Identities=22%  Similarity=0.476  Sum_probs=34.3

Q ss_pred             CCCCcCCCCCcceeeeCCeEEEEEEEEeCCCCCCCCCCcEEEeC-cccHHHHHhH
Q psy2626         300 KDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV-TNYIQWIADN  353 (355)
Q Consensus       300 ~~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~C~~~~~p~vyt~V-~~y~~WI~~~  353 (355)
                      ..+-.|+|||||+-..++  .++||.+.+..-..   -..|+-| ..++++|.+.
T Consensus       142 ~~t~~GnSGGPlvd~~dG--~VVGIhs~~~~~~~---~n~~~~i~~~~~~~l~~~  191 (219)
T d1lvmb_         142 IQTKDGQCGSPLVSTRDG--FIVGIHSASNFTNT---NNYFTSVPKNFMELLTNQ  191 (219)
T ss_dssp             BCCCTTCTTCEEEETTTC--CEEEEEEEEETTSS---SEEEEECCTTHHHHHHCG
T ss_pred             EEcCCCCCCCceEEcCCC--EEEEEEEeeecccc---eEEEEecCHHHHHHHhhc
Confidence            456789999999974323  59999998754222   3567878 4588887653

>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Human rhinovirus 2 [TaxId: 12130]

Probab=94.91  E-value=0.14  Score=40.08  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=20.4

Q ss_pred             CCCcCCCCCcceeeeCCeEEEEEEEEeCCC
Q psy2626         301 DSCGGDSGGPLMYPLDTKYYIIGVVSYGKK  330 (355)
Q Consensus       301 ~~C~GDsGgPL~~~~~~~~~lvGI~S~g~~  330 (355)
                      .+-.|+.||||+...    .++||.+.|.+
T Consensus       141 ~t~~g~cg~~~~~~~----~i~G~h~~g~~  166 (180)
T d1cqqa_         141 PTKSGYCGGVLYKIG----QVLGIHVGGNG  166 (180)
T ss_dssp             CCCTTCTTCEEEETT----EEEEEEEEECS
T ss_pred             cCCCcccCCeEEECC----CEEEEEeccCC
Confidence            455699999999643    49999998864

>d2h6ma1 b.47.1.4 (A:1-212) 3C cysteine protease (picornain 3C) {Human hepatitis A virus [TaxId: 208726]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Human hepatitis A virus [TaxId: 208726]

Probab=81.97  E-value=3.1  Score=32.74  Aligned_cols=26  Identities=19%  Similarity=0.507  Sum_probs=21.3

Q ss_pred             CCCCceeeeEEEEeCCEEEeeccccC
Q psy2626         135 NGKPEWMCGGALITKRYVLTAAHCVS  160 (355)
Q Consensus       135 ~~~~~~~C~GtLIs~~~VLTAAhCv~  160 (355)
                      ++...+.++|--|-.+|+|.-+|=+.
T Consensus        22 ~~~~~~~~~~Lgv~~~~~lvP~H~~~   47 (212)
T d2h6ma1          22 NGSVRWVMNALGVKDDWLLVPSHAYK   47 (212)
T ss_dssp             TSCCEEEEEEEEEEBTEEEEEGGGTT
T ss_pred             CCeeEEEEEEEEEeCCEEEEcccccc
Confidence            44456778999999999999999654