Psyllid ID: psy2756

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MTIVKHNYNGAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK
Secondary Structure (PSIPRED)
cccccccccccccEEEEEcEEEEEEcccccccEEEEEEEEEccEEEEEcccccccccEEEcccEEEccEEEEEcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccEEEEEEEEEEEEEEcccccccEEEEEEEEcccEEEEEcccccccccEEcccEEEEEcEEEEcccccccHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MTIVKHNYNGAFKRFVQTGRvvrisdgpyrgkLSSIVDVINQttvlvdgpetgvprsaLRLNQLHLTKLkinfpfnarTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK
Flexible Loop (DISEMBL)
mtivkhnyngafkrfvqtgrvvrisdgpyrgklssiVDVINQTTVLVDGPETGVPRSALRLNQLHLTklkinfpfnartKVVRKAWKDgqveekwskslwaqkvanvekrkk
Low Complexity Region (SEG)
MTIVKHNYNGAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK
Disordered region (IsUnstruct)
***VKHNYNGAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVEEKWSKSLWAQ**********
Disordered Region (DISOPRED)
**********AFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVE****
Disordered Region (DISEMBL)
MTIVKHNYNGAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKV********
Disordered Region (DISPRO)
MTIVKHNYNGAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEK***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIVKHNYNGAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q95ZE8	160	60S ribosomal protein L14	N/A	N/A	0.883	0.618	0.565	1e-27
P55841	166	60S ribosomal protein L14	yes	N/A	0.883	0.596	0.555	2e-27
O46160	152	60S ribosomal protein L14	N/A	N/A	0.901	0.664	0.504	1e-22
A1XQU3	213	60S ribosomal protein L14	yes	N/A	0.901	0.474	0.475	2e-21
Q3T0U2	214	60S ribosomal protein L14	yes	N/A	0.901	0.471	0.475	2e-21
Q63507	214	60S ribosomal protein L14	yes	N/A	0.901	0.471	0.475	5e-21
P36105	138	60S ribosomal protein L14	yes	N/A	0.866	0.702	0.494	1e-20
Q9CR57	217	60S ribosomal protein L14	yes	N/A	0.901	0.465	0.465	1e-20
P38754	138	60S ribosomal protein L14	yes	N/A	0.866	0.702	0.494	1e-20
P50914	215	60S ribosomal protein L14	yes	N/A	0.901	0.469	0.445	5e-20

>sp|Q95ZE8|RL14_DROVI 60S ribosomal protein L14 OS=Drosophila virilis GN=RpL14 PE=3 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 72/99 (72%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           F+RFVQTGR+ + S GP +G+L +IVDVI+Q  VLVDGP TGVPR   RLN LHLTK +I
Sbjct: 3   FERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRI 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
            FP+ A T++VRKAW D  ++ +W  S W+ K  N+ KR
Sbjct: 63  KFPYTAPTRIVRKAWVDSDLKAQWKVSPWSVKAQNICKR 101

Drosophila virilis (taxid: 7244)

>sp|P55841|RL14_DROME 60S ribosomal protein L14 OS=Drosophila melanogaster GN=RpL14 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/99 (55%), Positives = 72/99 (72%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           F+RFVQTGR+ + S GP +G+L +IVDVI+Q  VLVDGP TGVPR   RLN LHLTK +I
Sbjct: 3   FERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRI 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
            FP+ A T++VRKAW +  ++ +W  S W+ K  N+ KR
Sbjct: 63  KFPYTAPTRIVRKAWTESDLKAQWKVSPWSVKAQNICKR 101

Drosophila melanogaster (taxid: 7227)

>sp|O46160|RL14_LUMRU 60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 70/101 (69%)

Query: 11  AFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLK 70
           +F+RFV+ GRV R   GP +GKL +IVDVI+Q   LVDGP T V R ++   +L LT LK
Sbjct: 2   SFRRFVEIGRVARAVYGPDQGKLVAIVDVIDQNRALVDGPCTHVARKSMNFKELELTNLK 61

Query: 71  INFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRK 111
             FP +A+T VV+KAW+  ++ +KW +S  A+K+A  EKRK
Sbjct: 62  AKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRK 102

Lumbricus rubellus (taxid: 35632)

>sp|A1XQU3|RL14_PIG 60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 65/101 (64%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           F+RFV+ GRV  +S GP+ GKL +IVDVI+Q   LVDGP T V R A+    + LT   +
Sbjct: 3   FRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFIL 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
            FP +AR K VRKAW+   +  KW+ + WA+K+   EK+ K
Sbjct: 63  KFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAK 103

Sus scrofa (taxid: 9823)

>sp|Q3T0U2|RL14_BOVIN 60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 65/101 (64%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           F+RFV+ GRV  +S GP+ GKL +IVDVI+Q   LVDGP T V R A+    + LT   +
Sbjct: 3   FRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFIL 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
            FP +AR K VRKAW+   +  KW+ + WA+K+   EK+ K
Sbjct: 63  KFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAK 103

Bos taurus (taxid: 9913)

>sp|Q63507|RL14_RAT 60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 65/101 (64%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           F+RFV+ GRV  IS GP+ GKL +IVDVI+Q   LVDGP T V R A+    + LT   +
Sbjct: 3   FRRFVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFIL 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
            FP +AR K VRKAW+   +  KW+ + WA+K+   E++ K
Sbjct: 63  KFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAK 103

Rattus norvegicus (taxid: 10116)

>sp|P36105|RL14A_YEAST 60S ribosomal protein L14-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL14A PE=1 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 62/97 (63%)

Query: 14  RFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKINF 73
           R V+ GRVV I  G   GKL++IV++I+Q  VL+DGP+ GVPR A+ L Q+ LT L    
Sbjct: 13  RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFAL 72

Query: 74  PFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
           P  ART  V K W    V EKW+ S WA+K+A  E+R
Sbjct: 73  PRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERR 109

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9CR57|RL14_MOUSE 60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=2 SV=3

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 65/101 (64%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           F+R+V+ GRV  IS GP+ GKL +IVDVI+Q   LVDGP T V R A+    + LT   +
Sbjct: 3   FRRYVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFIL 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
            FP +AR K VRKAW+   +  KW+ + WA+K+   E++ K
Sbjct: 63  KFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAK 103

Mus musculus (taxid: 10090)

>sp|P38754|RL14B_YEAST 60S ribosomal protein L14-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL14B PE=1 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 62/97 (63%)

Query: 14  RFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKINF 73
           R V+ GRVV I  G   GKL++IV++I+Q  VL+DGP+ GVPR A+ L Q+ LT L    
Sbjct: 13  RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFAL 72

Query: 74  PFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
           P  ART  V K W    V EKW+ S WA+K+A  E+R
Sbjct: 73  PRGARTATVSKKWAAAGVCEKWAASSWAKKIAQRERR 109

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P50914|RL14_HUMAN 60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 64/101 (63%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           F+RFV+ GRV  +S GP+ GKL +IVDVI+Q   LVDGP T V R A+    + LT   +
Sbjct: 3   FRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFIL 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
            FP +A  K VR+AW+   +  KW+ + WA+K+   E++ K
Sbjct: 63  KFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAK 103

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
342905767	167	ribosomal protein L14-like protein [Rhod	0.883	0.592	0.707	2e-35
332374000	168	unknown [Dendroctonus ponderosae]	0.892	0.595	0.7	9e-35
146285359	157	ribosomal protein L14-like protein [Lygu	0.883	0.630	0.666	6e-33
187125210	149	ribosomal protein L14 [Acyrthosiphon pis	0.883	0.664	0.646	2e-32
264667335	168	ribosomal protein L14 [Chrysomela tremul	0.883	0.589	0.666	2e-32
389032513	161	ribosomal protein L14 [Ctenocephalides f	0.883	0.614	0.656	9e-32
239789488	149	ACYPI000029 [Acyrthosiphon pisum]	0.883	0.664	0.636	3e-31
15213764	166	ribosomal protein L14 [Spodoptera frugip	0.883	0.596	0.595	5e-30
389608311	167	ribosomal protein L14 [Papilio xuthus]	0.883	0.592	0.606	7e-30
315115349	166	ribosomal protein L14 [Euphydryas aurini	0.883	0.596	0.585	1e-29

>gi|342905767|gb|AEL79167.1| ribosomal protein L14-like protein [Rhodnius prolixus]

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/99 (70%), Positives = 83/99 (83%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           FKRFVQTGRV  ISDG Y+GKL +IVDVINQT  LVDGPETGVPRS +RLNQLHLTK ++
Sbjct: 3   FKRFVQTGRVAYISDGRYKGKLCAIVDVINQTRALVDGPETGVPRSGIRLNQLHLTKFRL 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
            FPF A T+VVRKAWKD +++EKW +S+WA+KV   +KR
Sbjct: 63  RFPFTASTRVVRKAWKDDKLDEKWKESMWAKKVEAKKKR 101

Source: Rhodnius prolixus

Species: Rhodnius prolixus

Genus: Rhodnius

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374000|gb|AEE62141.1| unknown [Dendroctonus ponderosae]

 Score =  150 bits (379), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 86/100 (86%)

Query: 11  AFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLK 70
           AF+RFV+TGRV  +SDGP +GKL SIVDVI+QT VL+DGPET VPRS +RLNQLHLTK +
Sbjct: 2   AFERFVETGRVAVVSDGPNKGKLVSIVDVIDQTRVLIDGPETNVPRSQIRLNQLHLTKFR 61

Query: 71  INFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
           I +PF A T+VVRKAWK+G+V EK+SK++WAQK+A  EKR
Sbjct: 62  IKYPFTASTRVVRKAWKEGEVVEKFSKTVWAQKMAAKEKR 101

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|146285359|gb|ABQ18256.1| ribosomal protein L14-like protein [Lygus lineolaris]

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 66/99 (66%), Positives = 80/99 (80%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           FKRFV+TGRV  ISDGP +GKL  IVD+INQT  LVDGPETGVPR  LRLNQLHLTK ++
Sbjct: 3   FKRFVETGRVALISDGPNKGKLCCIVDIINQTRALVDGPETGVPRQGLRLNQLHLTKFRL 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
            FP+   T+VVRKAWKD +++EKW++S WA+KV   +KR
Sbjct: 63  KFPYTGSTRVVRKAWKDAKLDEKWAESKWARKVDAKKKR 101

Source: Lygus lineolaris

Species: Lygus lineolaris

Genus: Lygus

Family: Miridae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|187125210|ref|NP_001119657.1| ribosomal protein L14 [Acyrthosiphon pisum] gi|89473732|gb|ABD72678.1| ribosomal protein L14-like [Acyrthosiphon pisum]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/99 (64%), Positives = 80/99 (80%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           FKRFV+TGRVV + DGPY+GK+ SIVD I+Q TVLVDGPETGVPRS +R++Q+HLTK KI
Sbjct: 3   FKRFVETGRVVYVVDGPYKGKIVSIVDCIDQKTVLVDGPETGVPRSKMRISQIHLTKFKI 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
           NFP+N  T+ VR+AWK   + + W +S WA+K AN EKR
Sbjct: 63  NFPYNGSTRTVRQAWKKADLNKLWVQSRWAEKAANREKR 101

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|264667335|gb|ACY71253.1| ribosomal protein L14 [Chrysomela tremula]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/99 (66%), Positives = 82/99 (82%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           F+RFV+TGRV  +SDGP +GKL SIVDVI+QT VLVDGPE+GV RS +RLNQLHLTK +I
Sbjct: 3   FQRFVETGRVAVVSDGPCKGKLVSIVDVIDQTRVLVDGPESGVSRSQIRLNQLHLTKFRI 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
            FP+ A T+VVRKAW   ++ EKW++S+WA+KVA  EKR
Sbjct: 63  RFPYTASTRVVRKAWNTEKISEKWAESIWAKKVAAKEKR 101

Source: Chrysomela tremula

Species: Chrysomela tremula

Genus: Chrysomela

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389032513|gb|AFK82393.1| ribosomal protein L14 [Ctenocephalides felis]

 Score =  140 bits (353), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 81/99 (81%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           F+RFV+TGRV  ISDGP +GKL SIVDVI+QT VLVDGP +GVPR ALR+NQLHLTK  I
Sbjct: 3   FQRFVETGRVALISDGPNKGKLISIVDVIDQTRVLVDGPCSGVPRQALRINQLHLTKFNI 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
            FP+   T+VVRKAW D +V+EKW++S+WA+K+A  + R
Sbjct: 63  KFPYLGSTRVVRKAWTDAKVDEKWAESMWARKLAAKQAR 101

Source: Ctenocephalides felis

Species: Ctenocephalides felis

Genus: Ctenocephalides

Family: Pulicidae

Order: Siphonaptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239789488|dbj|BAH71366.1| ACYPI000029 [Acyrthosiphon pisum]

 Score =  138 bits (348), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 79/99 (79%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           FKRFV+TGRVV + DGPY+GK+ SIVD I+Q TVLVDGPETGVPRS +R++Q+ LTK KI
Sbjct: 3   FKRFVETGRVVYVVDGPYKGKIVSIVDCIDQKTVLVDGPETGVPRSKMRISQIPLTKFKI 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
           NFP+N  T+ VR+AWK   + + W +S WA+K AN EKR
Sbjct: 63  NFPYNGSTRTVRQAWKKADLNKLWVQSRWAEKAANREKR 101

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|15213764|gb|AAK92157.1|AF400185_1 ribosomal protein L14 [Spodoptera frugiperda]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 78/99 (78%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           F RFV+ GRV  ++DGP +GKL S+VDVI+QT  LVDGP +GV R  +RLNQLHLTK ++
Sbjct: 3   FARFVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPCSGVSRQQIRLNQLHLTKFRL 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
           N+PF A T++VRKAW D ++ EKW++S WA ++AN EKR
Sbjct: 63  NYPFTAPTRIVRKAWTDAKLSEKWTESQWATRLANKEKR 101

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608311|dbj|BAM17767.1| ribosomal protein L14 [Papilio xuthus]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 78/99 (78%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           F RFVQ GRV  +++GP +GKL S+VDVI+QT  LVDGP +GVPR  +RLNQLHLTK ++
Sbjct: 3   FARFVQPGRVALVAEGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
            FPF A T+VVRKAW D ++ EKW++S W++K+ N EKR
Sbjct: 63  KFPFTAPTRVVRKAWTDEKLNEKWAESQWSKKLENKEKR 101

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|315115349|gb|ADT80647.1| ribosomal protein L14 [Euphydryas aurinia]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 80/99 (80%)

Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           F+R+V+ GRV  ++DGP +GKL S+VDVI+QT  LVDGP +GVPR  +RLNQLHLTK ++
Sbjct: 3   FERYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 62

Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
           ++PF A T+VVRKAW D ++ EKW++S W++ +AN EKR
Sbjct: 63  SYPFTAPTRVVRKAWIDAKLNEKWAESQWSKNLANKEKR 101

Source: Euphydryas aurinia

Species: Euphydryas aurinia

Genus: Euphydryas

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
FB|FBgn0017579	166	RpL14 "Ribosomal protein L14"	0.883	0.596	0.555	1.5e-26
ZFIN|ZDB-GENE-030131-2085	139	rpl14 "ribosomal protein L14"	0.875	0.705	0.514	4.9e-21
UNIPROTKB|G8JKV5	213	RPL14 "60S ribosomal protein L	0.901	0.474	0.475	8e-21
UNIPROTKB|Q3T0U2	214	RPL14 "60S ribosomal protein L	0.901	0.471	0.475	8e-21
UNIPROTKB|A1XQU3	213	RPL14 "60S ribosomal protein L	0.901	0.474	0.475	8e-21
UNIPROTKB|F1SJQ6	213	RPL14 "60S ribosomal protein L	0.901	0.474	0.475	8e-21
UNIPROTKB|F1NTC7	145	RPL14 "Uncharacterized protein	0.901	0.696	0.465	1.7e-20
UNIPROTKB|Q98TF9	131	RPL14 "Uncharacterized protein	0.901	0.770	0.465	1.7e-20
RGD|621180	214	Rpl14 "ribosomal protein L14"	0.901	0.471	0.475	1.7e-20
UNIPROTKB|Q63507	214	Rpl14 "60S ribosomal protein L	0.901	0.471	0.475	1.7e-20

FB|FBgn0017579 RpL14 "Ribosomal protein L14" [Drosophila melanogaster (taxid:7227)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 55/99 (55%), Positives = 72/99 (72%)

Query:    12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
             F+RFVQTGR+ + S GP +G+L +IVDVI+Q  VLVDGP TGVPR   RLN LHLTK +I
Sbjct:     3 FERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRI 62

Query:    72 NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
              FP+ A T++VRKAW +  ++ +W  S W+ K  N+ KR
Sbjct:    63 KFPYTAPTRIVRKAWTESDLKAQWKVSPWSVKAQNICKR 101

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS;NAS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0006412 "translation" evidence=ISS;NAS

GO:0022626 "cytosolic ribosome" evidence=ISS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

GO:0051297 "centrosome organization" evidence=IMP

ZFIN|ZDB-GENE-030131-2085 rpl14 "ribosomal protein L14" [Danio rerio (taxid:7955)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 52/101 (51%), Positives = 65/101 (64%)

Query:    12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
             FKRFV+ GRV  I+ GP+ GKL +IVDVI+Q   LVDGP TGV R AL    L LT   I
Sbjct:     3 FKRFVEIGRVAFIAFGPHEGKLVAIVDVIDQNRALVDGPCTGVKRQALPFKCLQLTDYVI 62

Query:    72 NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
               P   R K VR+AW+  ++ +KW +S WA+K+   E RKK
Sbjct:    63 KVPHRNRQKYVRRAWEKAEISKKWEESSWAKKI---EARKK 100

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|G8JKV5 RPL14 "60S ribosomal protein L14" [Bos taurus (taxid:9913)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/101 (47%), Positives = 65/101 (64%)

Query:    12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
             F+RFV+ GRV  +S GP+ GKL +IVDVI+Q   LVDGP T V R A+    + LT   +
Sbjct:     3 FRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFIL 62

Query:    72 NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
              FP +AR K VRKAW+   +  KW+ + WA+K+   EK+ K
Sbjct:    63 KFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAK 103

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q3T0U2 RPL14 "60S ribosomal protein L14" [Bos taurus (taxid:9913)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/101 (47%), Positives = 65/101 (64%)

Query:    12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
             F+RFV+ GRV  +S GP+ GKL +IVDVI+Q   LVDGP T V R A+    + LT   +
Sbjct:     3 FRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFIL 62

Query:    72 NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
              FP +AR K VRKAW+   +  KW+ + WA+K+   EK+ K
Sbjct:    63 KFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAK 103

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|A1XQU3 RPL14 "60S ribosomal protein L14" [Sus scrofa (taxid:9823)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/101 (47%), Positives = 65/101 (64%)

Query:    12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
             F+RFV+ GRV  +S GP+ GKL +IVDVI+Q   LVDGP T V R A+    + LT   +
Sbjct:     3 FRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFIL 62

Query:    72 NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
              FP +AR K VRKAW+   +  KW+ + WA+K+   EK+ K
Sbjct:    63 KFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAK 103

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1SJQ6 RPL14 "60S ribosomal protein L14" [Sus scrofa (taxid:9823)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/101 (47%), Positives = 65/101 (64%)

Query:    12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
             F+RFV+ GRV  +S GP+ GKL +IVDVI+Q   LVDGP T V R A+    + LT   +
Sbjct:     3 FRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFECMQLTDFIL 62

Query:    72 NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
              FP +AR K VRKAW+   +  KW+ + WA+K+   EK+ K
Sbjct:    63 KFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAK 103

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1NTC7 RPL14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 47/101 (46%), Positives = 66/101 (65%)

Query:    12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
             FKRFV+ GR+  +S G + GKL +IVDVI+Q   LVDGP +GV R A+    + LT   +
Sbjct:     2 FKRFVEIGRIAFVSFGRHAGKLVAIVDVIDQNRALVDGPCSGVRRQAMPFKCMQLTDFVL 61

Query:    72 NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
              FP +AR K VR+AW+   + EKW+ + WA+K+   EK+ K
Sbjct:    62 KFPHSARQKCVRRAWEKENINEKWAATRWAKKIEAREKKAK 102

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

UNIPROTKB|Q98TF9 RPL14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 47/101 (46%), Positives = 66/101 (65%)

Query:    12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
             FKRFV+ GR+  +S G + GKL +IVDVI+Q   LVDGP +GV R A+    + LT   +
Sbjct:     3 FKRFVEIGRIAFVSFGRHAGKLVAIVDVIDQNRALVDGPCSGVRRQAMPFKCMQLTDFVL 62

Query:    72 NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
              FP +AR K VR+AW+   + EKW+ + WA+K+   EK+ K
Sbjct:    63 KFPHSARQKCVRRAWEKENINEKWAATRWAKKIEAREKKAK 103

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

RGD|621180 Rpl14 "ribosomal protein L14" [Rattus norvegicus (taxid:10116)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 48/101 (47%), Positives = 65/101 (64%)

Query:    12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
             F+RFV+ GRV  IS GP+ GKL +IVDVI+Q   LVDGP T V R A+    + LT   +
Sbjct:     3 FRRFVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFIL 62

Query:    72 NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
              FP +AR K VRKAW+   +  KW+ + WA+K+   E++ K
Sbjct:    63 KFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAK 103

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0042273 "ribosomal large subunit biogenesis" evidence=ISO

UNIPROTKB|Q63507 Rpl14 "60S ribosomal protein L14" [Rattus norvegicus (taxid:10116)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 48/101 (47%), Positives = 65/101 (64%)

Query:    12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
             F+RFV+ GRV  IS GP+ GKL +IVDVI+Q   LVDGP T V R A+    + LT   +
Sbjct:     3 FRRFVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFIL 62

Query:    72 NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
              FP +AR K VRKAW+   +  KW+ + WA+K+   E++ K
Sbjct:    63 KFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAK 103

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SIM4	RL141_ARATH	No assigned EC number	0.4	0.8660	0.7238	yes	N/A
P36105	RL14A_YEAST	No assigned EC number	0.4948	0.8660	0.7028	yes	N/A
P55841	RL14_DROME	No assigned EC number	0.5555	0.8839	0.5963	yes	N/A
P38754	RL14B_YEAST	No assigned EC number	0.4948	0.8660	0.7028	yes	N/A
O94238	RL14_SCHPO	No assigned EC number	0.4086	0.8303	0.6940	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	112
PTZ00065	130	PTZ00065, PTZ00065, 60S ribosomal protein L14; Pro	2e-24
pfam01929	73	pfam01929, Ribosomal_L14e, Ribosomal protein L14	4e-18
cd06088	76	cd06088, KOW_RPL14, KOW motif of Ribosomal Protein	9e-18
COG2163	125	COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [	1e-09
PRK04333	84	PRK04333, PRK04333, 50S ribosomal protein L14e; Va	5e-05

>gnl|CDD|240252 PTZ00065, PTZ00065, 60S ribosomal protein L14; Provisional

 Score = 89.8 bits (223), Expect = 2e-24
 Identities = 44/104 (42%), Positives = 59/104 (56%), Gaps = 1/104 (0%)

Query: 9   NGAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE-TGVPRSALRLNQLHLT 67
              FKRFV+ GR+  I  GP  GKL  IVD++  T VLVDG   TGV R ++ L +L LT
Sbjct: 1   MPLFKRFVEPGRLCLIQYGPDAGKLCFIVDIVTPTRVLVDGAFITGVKRQSIPLKRLKLT 60

Query: 68  KLKINFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRK 111
             KI     ART  ++KA K     E+++K+   +K+   EKR 
Sbjct: 61  DEKIKINRGARTGTLKKALKKDNALEEFNKTSLGKKLIIKEKRA 104

Length = 130

>gnl|CDD|190164 pfam01929, Ribosomal_L14e, Ribosomal protein L14

 Score = 71.8 bits (177), Expect = 4e-18
 Identities = 27/57 (47%), Positives = 37/57 (64%)

Query: 56  RSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK 112
           R  + L +LHLTK K+  P  ART  V+KAW+   V EKW++S WA+K+A  +KR  
Sbjct: 1   RQVINLKRLHLTKFKVKIPRGARTGTVKKAWEKADVLEKWAESSWAKKLAAKKKRAN 57

This family includes the eukaryotic ribosomal protein L14. Length = 73

>gnl|CDD|240512 cd06088, KOW_RPL14, KOW motif of Ribosomal Protein L14

 Score = 71.0 bits (175), Expect = 9e-18
 Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 16 VQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGP-ETGVPRSALRLNQLHLTKLKINFP 74
          V+ GRVV    G  +GKL  IVD+I++  VLVDGP  TGV      L  L LT   I+ P
Sbjct: 1  VEIGRVVLSKAGRDKGKLYVIVDIIDENVVLVDGPLRTGVKPKKKNLKHLQLTDFVIDIP 60

Query: 75 FNARTKVVRKAWKD 88
            ARTK V+KA + 
Sbjct: 61 RGARTKGVKKANEK 74

RPL14 is a component of the large ribosomal subunit in both archaea and eukaryotes with KOW motif at its N terminal. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. Auto-antibodies to RPL14 in humans have been associated with systemic lupus erythematosus . Although RPL14 is well conserved, it is not found in all archaea, and therefore it is presumably not essential. Length = 76

>gnl|CDD|225074 COG2163, RPL14A, Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]

 Score = 51.3 bits (123), Expect = 1e-09
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE--TGVPRSALRLNQLHLTKL 69
           +  ++ GRVV ++ G + GK   IV +I+   VL+ GP+   GVPR  + +  L  T  
Sbjct: 1  MRASLEVGRVVVVTAGRFAGKKVVIVKIIDDNFVLITGPKKVKGVPRRRINIKHLEPTDK 60

Query: 70 KINFPFNARTKVVRKAWKDGQVEEKWSKS 98
           I+    A  + V+KA +   V  K  KS
Sbjct: 61 VIDLVRGASDEKVKKANEAAGVLAKLDKS 89

Length = 125

>gnl|CDD|235283 PRK04333, PRK04333, 50S ribosomal protein L14e; Validated

 Score = 38.5 bits (90), Expect = 5e-05
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 16 VQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGP-ETGVPRSALRLNQLHLTKLKINFP 74
          ++ GRV   + G   G+   IVD+I++  VLV GP  TGV R    +  L  T  K++  
Sbjct: 4  IEVGRVCVKTAGREAGRKCVIVDIIDKNFVLVTGPSLTGVKRRRCNIKHLEPTDKKVDIE 63

Query: 75 FNARTKVVRKA 85
            A  + V+KA
Sbjct: 64 KGASDEEVKKA 74

Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
PTZ00065	130	60S ribosomal protein L14; Provisional	100.0
KOG3421|consensus	136		100.0
PRK04333	84	50S ribosomal protein L14e; Validated	99.97
COG2163	125	RPL14A Ribosomal protein L14E/L6E/L27E [Translatio	99.94
PF01929	77	Ribosomal_L14e: Ribosomal protein L14; InterPro: I	99.87
PTZ00471	134	60S ribosomal protein L27; Provisional	99.27
KOG3418|consensus	136		98.7
PF00467	32	KOW: KOW motif; InterPro: IPR005824 Ribosomes are	98.09
smart00739	28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	96.62
PRK01191	120	rpl24p 50S ribosomal protein L24P; Validated	95.95
CHL00141	83	rpl24 ribosomal protein L24; Validated	95.48
PRK12281	76	rplX 50S ribosomal protein L24; Reviewed	95.24
TIGR01080	114	rplX_A_E ribosomal protein L24p/L26e, archaeal/euk	95.22
TIGR01079	104	rplX_bact ribosomal protein L24, bacterial/organel	94.32
PRK00004	105	rplX 50S ribosomal protein L24; Reviewed	92.98
PRK05609	181	nusG transcription antitermination protein NusG; V	92.57
TIGR00405	145	L26e_arch ribosomal protein L24p/L26e, archaeal. T	91.52
TIGR01955	159	RfaH transcriptional activator RfaH. This model re	91.33
PTZ00194	143	60S ribosomal protein L26; Provisional	90.93
TIGR00922	172	nusG transcription termination/antitermination fac	90.27
PRK08559	153	nusG transcription antitermination protein NusG; V	89.85
PRK09014	162	rfaH transcriptional activator RfaH; Provisional	89.47
PF13234	268	rRNA_proc-arch: rRNA-processing arch domain; PDB:	84.76
COG0198	104	RplX Ribosomal protein L24 [Translation, ribosomal	83.24
TIGR01956	258	NusG_myco NusG family protein. This model represen	82.0

>PTZ00065 60S ribosomal protein L14; Provisional

Probab=100.00  E-value=4.1e-55  Score=321.48  Aligned_cols=103  Identities=43%  Similarity=0.595  Sum_probs=101.4

Q ss_pred             cccceeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCC-CCCCcceeeecCceeecceEEEecCCCChHHHHHHHHh
Q psy2756          10 GAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGP-ETGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKD   88 (112)
Q Consensus        10 m~f~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP-~tgV~Rq~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~   88 (112)
                      ++|+||||+||||+|++||++||||+||||||||||||||| +|||+||+|||+||+||+|+|+|||||+|++|+|||++
T Consensus         2 ~~f~rfVEiGRVvli~~Gp~~GKL~vIVDIID~nRvLVDGP~~tgV~Rq~i~~k~l~LT~~~v~i~r~a~t~~v~ka~~~   81 (130)
T PTZ00065          2 PLFKRFVEPGRLCLIQYGPDAGKLCFIVDIVTPTRVLVDGAFITGVKRQSIPLKRLKLTDEKIKINRGARTGTLKKALKK   81 (130)
T ss_pred             cccccceeeceEEEEecCCCCCCEEEEEEEEcCCeEEEeCCCcCCcceeEEeccceEEccEEEecCCCCCcHHHHHHHHH
Confidence            68999999999999999999999999999999999999999 89999999999999999999999999999999999999


Q ss_pred             cchHHHHhhcHHHHHHHHHHHhhC
Q psy2756          89 GQVEEKWSKSLWAQKVANVEKRKK  112 (112)
Q Consensus        89 a~i~~kw~~s~waKk~~~~~~R~~  112 (112)
                      ++|.+||++|+||||++++++|++
T Consensus        82 a~i~~kw~~s~waKK~~~~~~Ra~  105 (130)
T PTZ00065         82 DNALEEFNKTSLGKKLIIKEKRAN  105 (130)
T ss_pred             ccHHHHHHHhHHHHHHHHHHHHhc
Confidence            999999999999999999999985

>KOG3421|consensus

Probab=100.00  E-value=8.8e-44  Score=262.77  Aligned_cols=103  Identities=52%  Similarity=0.864  Sum_probs=101.5

Q ss_pred             cccceeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCCCCCcceeeecCceeecceEEEecCCCChHHHHHHHHhc
Q psy2756          10 GAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDG   89 (112)
Q Consensus        10 m~f~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~tgV~Rq~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a   89 (112)
                      |+|+||||+|||+++++||++|||++|||||||||+|||||||+|+||.+||++++||+|.+++|||+++++|.++|+++
T Consensus         1 m~f~r~veVGrva~v~~G~~~GkL~AIVdviDqnr~lvDGp~t~v~rq~~~~~~~~LT~~~~kfp~g~~~~~v~k~~~aa   80 (136)
T KOG3421|consen    1 MVFKRFVEVGRVALVSFGPDAGKLVAIVDVIDQNRALVDGPCTGVPRQAMNLKCLQLTDFVLKFPRGARKKIVKKAWKAA   80 (136)
T ss_pred             CcchhhhhcceEEEEEecCCCceEEEEEEeecchhhhccCcccccchhhcchhheeeeeeeEecccCcccHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHhhcHHHHHHHHHHHhhC
Q psy2756          90 QVEEKWSKSLWAQKVANVEKRKK  112 (112)
Q Consensus        90 ~i~~kw~~s~waKk~~~~~~R~~  112 (112)
                      ++.++|..|+|++|+.+++.|++
T Consensus        81 ~v~~k~~ks~wakK~~a~k~ra~  103 (136)
T KOG3421|consen   81 DVKAKWKKSPWAKKAPAKKRRAA  103 (136)
T ss_pred             HHHHhhhcCchhhhhHHHHhhhh
Confidence            99999999999999999999874

>PRK04333 50S ribosomal protein L14e; Validated

Probab=99.97  E-value=2.3e-30  Score=177.81  Aligned_cols=79  Identities=33%  Similarity=0.479  Sum_probs=76.7

Q ss_pred             eeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCC-CCCCcceeeecCceeecceEEEecCCCChHHHHHHHHhcchHHH
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGP-ETGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVEEK   94 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP-~tgV~Rq~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~i~~k   94 (112)
                      ||+||||++.+|||+||+|+||||+|+|||||||| +++++||.+|++||+||++++++++++++++|+++|++++|.+.
T Consensus         4 v~~GrvV~~~~Grd~gk~~vIv~i~d~~~vlVdg~~~~~~~rk~kn~khl~lt~~ki~~~~~~~~~~vrk~l~~~~v~~~   83 (84)
T PRK04333          4 IEVGRVCVKTAGREAGRKCVIVDIIDKNFVLVTGPSLTGVKRRRCNIKHLEPTDKKVDIEKGASDEEVKKALEAAGLTEY   83 (84)
T ss_pred             ccccEEEEEeccCCCCCEEEEEEEecCCEEEEECCCcCCCCCeeechHHEEEeeEEEECCCCCCCHHHHHHHHHccchhc
Confidence            79999999999999999999999999999999999 68999999999999999999999999999999999999999863

>COG2163 RPL14A Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.1e-26  Score=169.92  Aligned_cols=96  Identities=31%  Similarity=0.490  Sum_probs=90.3

Q ss_pred             ceeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCC--CCCcceeeecCceeecceEEEecCCCChHHHHHHHHhcc
Q psy2756          13 KRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE--TGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQ   90 (112)
Q Consensus        13 ~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~--tgV~Rq~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~   90 (112)
                      .+++|+||||+++.|+++||+|||||+||+|++|++||+  +||||+.+|++|+.+|+.+++++||++.+.+.++|++++
T Consensus         2 ~~~l~~GrVvvv~~GR~aGkk~VIv~~iDd~~v~i~gp~~v~gv~r~r~n~~~l~~t~~~~~~~rg~~~~~v~~~~~a~~   81 (125)
T COG2163           2 RASLEVGRVVVVTAGRFAGKKVVIVKIIDDNFVLITGPKKVKGVPRRRINIKHLEPTDKVIDLVRGASDEKVKKANEAAG   81 (125)
T ss_pred             CccccCCeEEEEecceeCCceEEEEEEccCCEEEEeCCccccCCccccccceeeeccceeeeecccccHHHHHHHHHhhh
Confidence            578999999999999999999999999999999999999  999999999999999999999999999999999999999


Q ss_pred             hHHHHhhcHHHHHHHHHHHh
Q psy2756          91 VEEKWSKSLWAQKVANVEKR  110 (112)
Q Consensus        91 i~~kw~~s~waKk~~~~~~R  110 (112)
                      ..++|+.|+  +.+++++-+
T Consensus        82 ~~~~~~~~~--~~~~~k~~~   99 (125)
T COG2163          82 VLAKLDKSA--KNLETKKVR   99 (125)
T ss_pred             hhccccccc--hhhhhhhhh
Confidence            999998888  666655544

>PF01929 Ribosomal_L14e: Ribosomal protein L14; InterPro: IPR002784 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.87  E-value=3.5e-23  Score=140.49  Aligned_cols=58  Identities=48%  Similarity=0.909  Sum_probs=56.2

Q ss_pred             cceeeecCceeecceEEEecCCCChHHHHHHHHhcchHHHHhhcHHHHHHHHHHHhhC
Q psy2756          55 PRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRKK  112 (112)
Q Consensus        55 ~Rq~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~i~~kw~~s~waKk~~~~~~R~~  112 (112)
                      |||+|||+||+||+|+|+||||+++++|++||++++|.++|++|+||||++++++|++
T Consensus         1 ~Rq~i~~k~l~LT~~~i~i~r~a~t~~vkka~~~~~i~~kw~~s~waKk~~~~~~Ra~   58 (77)
T PF01929_consen    1 PRQVINLKRLHLTDFVIKIPRGARTKTVKKAWEKADIDEKWAESAWAKKIAAREKRAN   58 (77)
T ss_dssp             -EEEEECTSSEEEEEETTTTTTTCHHHHHHHHHHHTCHHHHHHHHCSCHHHHHHHHHS
T ss_pred             CCceeeccceEeecEEEeccCCCCcHHHHHHHHHccHHHHHHHhHHHHHHHHHHHHhc
Confidence            6999999999999999999999999999999999999999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry includes the eukaryotic ribosomal protein L14, which binds to the 60S ribosomal subunit, and archaebacterial ribosomal protein L14E, which binds to the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_N 3O5H_N 3O58_N 2KDS_A 2JOY_A 4A1B_F 4A19_F 4A18_F 4A1D_F 3IZR_N.

>PTZ00471 60S ribosomal protein L27; Provisional

Probab=99.27  E-value=1.2e-11  Score=91.77  Aligned_cols=60  Identities=27%  Similarity=0.563  Sum_probs=53.5

Q ss_pred             eeeeeceEEEEecCCCCCceEEEEEeeeC-------CeEEEeC----CCCCC----------cc-------eeeecCcee
Q psy2756          14 RFVQTGRVVRISDGPYRGKLSSIVDVINQ-------TTVLVDG----PETGV----------PR-------SALRLNQLH   65 (112)
Q Consensus        14 rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~-------nRvLVDG----P~tgV----------~R-------q~i~~k~l~   65 (112)
                      +|+.+|+||++..|+||||.||||..+|+       +.+||.|    |- .|          +|       .++|++||.
T Consensus         3 K~~kpgkVVivL~GR~AGkKaVivk~~ddgt~drpy~halVaGIdryP~-kVtk~M~kkki~KRskiK~FvK~vNynHlm   81 (134)
T PTZ00471          3 KFLKPGKVVIVTSGRYAGRKAVIVQNFDTASKERPYGHALVAGIKKYPK-KVVRGMSKRTIARRSQVGVFLRVVNHKHFL   81 (134)
T ss_pred             ccccCCEEEEEEccccCCcEEEEEeecCCCCccCcCceEEEEeecccch-hhhhhccHHHHHHHhccccceEEEeeceec
Confidence            78999999999999999999999999999       5999999    64 12          11       569999999


Q ss_pred             ecceEEEec
Q psy2756          66 LTKLKINFP   74 (112)
Q Consensus        66 LT~~~i~i~   74 (112)
                      ||.+.++++
T Consensus        82 PTRY~vdi~   90 (134)
T PTZ00471         82 PTRYNMDMS   90 (134)
T ss_pred             ccceeeecc
Confidence            999999998

>KOG3418|consensus

Probab=98.70  E-value=4.6e-08  Score=72.92  Aligned_cols=61  Identities=31%  Similarity=0.539  Sum_probs=53.7

Q ss_pred             eeeeeceEEEEecCCCCCceEEEEEeeeCC-------eEEEeCCC---CCC----------cc-------eeeecCceee
Q psy2756          14 RFVQTGRVVRISDGPYRGKLSSIVDVINQT-------TVLVDGPE---TGV----------PR-------SALRLNQLHL   66 (112)
Q Consensus        14 rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~n-------RvLVDGP~---tgV----------~R-------q~i~~k~l~L   66 (112)
                      .|+.+|-||++.+|.|+||.+|||--+|+.       .+||.|-.   ..|          +|       .++|++||.+
T Consensus         3 kflkPgkvv~v~sG~yAg~KaVivk~~Ddg~~d~p~~h~LvAgi~ryP~kvt~~~gkkk~~krsk~k~flKv~ny~hlMp   82 (136)
T KOG3418|consen    3 KFLKPGKVVLVLSGRYAGKKAVIVKNIDDGTEDKPYGHALVAGVDRYPRKVTKSMGKKKLAKRSKVKPFLKVINYNHLMP   82 (136)
T ss_pred             ccccCCcEEEeecccccCccEEEEeecccCCccCCCceeeeeehhhccccccccccchhhhhcccceeEEEEeecccccC
Confidence            689999999999999999999999999999       99999954   111          22       7899999999


Q ss_pred             cceEEEec
Q psy2756          67 TKLKINFP   74 (112)
Q Consensus        67 T~~~i~i~   74 (112)
                      |.++++++
T Consensus        83 tRy~vdv~   90 (136)
T KOG3418|consen   83 TRYTVDVL   90 (136)
T ss_pred             cceEEeeh
Confidence            99999976

>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.09  E-value=6e-06  Score=46.94  Aligned_cols=31  Identities=32%  Similarity=0.724  Sum_probs=28.8

Q ss_pred             eceEEEEecCCCCCceEEEEEeeeCC-eEEEe
Q psy2756          18 TGRVVRISDGPYRGKLSSIVDVINQT-TVLVD   48 (112)
Q Consensus        18 vGRVv~i~~Gp~aGKl~vIVdIiD~n-RvLVD   48 (112)
                      +|..|.|..||++|+.+.|++|.+++ +|+||
T Consensus         1 ~Gd~V~V~~G~~~G~~G~I~~i~~~~~~V~ve   32 (32)
T PF00467_consen    1 VGDTVKVISGPFKGKIGKIVEIDRSKVRVTVE   32 (32)
T ss_dssp             TTSEEEESSSTTTTEEEEEEEEETTTTEEEES
T ss_pred             CCCEEEEeEcCCCCceEEEEEEECCCCEEEEC
Confidence            58999999999999999999999998 88876

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif

Probab=96.62  E-value=0.0033  Score=33.33  Aligned_cols=26  Identities=31%  Similarity=0.755  Sum_probs=23.4

Q ss_pred             eeeceEEEEecCCCCCceEEEEEeee
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVIN   41 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIiD   41 (112)
                      +++|..|.|..||++|+.+.|+++-+
T Consensus         2 ~~~G~~V~I~~G~~~g~~g~i~~i~~   27 (28)
T smart00739        2 FEVGDTVRVIAGPFKGKVGKVLEVDG   27 (28)
T ss_pred             CCCCCEEEEeECCCCCcEEEEEEEcC
Confidence            47899999999999999999998754

Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated

Probab=95.95  E-value=0.017  Score=42.40  Aligned_cols=56  Identities=23%  Similarity=0.506  Sum_probs=44.0

Q ss_pred             eeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCC----CCCcc-eeeecCceeecceEE
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPE----TGVPR-SALRLNQLHLTKLKI   71 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~----tgV~R-q~i~~k~l~LT~~~i   71 (112)
                      +..|-.|.|.+|+++|+.+.|+.|. +.++|+|+|-.    .|... -.|...++.|+++.+
T Consensus        46 IkkGD~V~VisG~~KGk~GkV~~V~~~~~~V~VeGvn~~k~~G~~~e~pIh~SNV~l~~l~l  107 (120)
T PRK01191         46 VRKGDTVKVMRGDFKGEEGKVVEVDLKRGRIYVEGVTVKKADGTEVPRPIHPSNVMITKLDL  107 (120)
T ss_pred             EeCCCEEEEeecCCCCceEEEEEEEcCCCEEEEeCcEEECCCCeEEEcccchhHeEEEeCcc
Confidence            7789999999999999999999996 77799999965    34322 235557788877654

>CHL00141 rpl24 ribosomal protein L24; Validated

Probab=95.48  E-value=0.031  Score=38.26  Aligned_cols=36  Identities=31%  Similarity=0.626  Sum_probs=31.5

Q ss_pred             eeeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCC
Q psy2756          15 FVQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGP   50 (112)
Q Consensus        15 fVEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP   50 (112)
                      -+..|--|.|..|+++||...|..|. +.|+|+|+|=
T Consensus         8 ~I~~GD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Vegv   44 (83)
T CHL00141          8 HVKIGDTVKIISGSDKGKIGEVLKIIKKSNKVIVKGI   44 (83)
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEcCc
Confidence            56789889999999999999999995 5568999996

>PRK12281 rplX 50S ribosomal protein L24; Reviewed

Probab=95.24  E-value=0.046  Score=36.89  Aligned_cols=35  Identities=29%  Similarity=0.622  Sum_probs=30.7

Q ss_pred             eeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCC
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGP   50 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP   50 (112)
                      +..|--|.|.+|+++||...|..|. +.++|+|+|=
T Consensus         7 I~kGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Vegv   42 (76)
T PRK12281          7 VKKGDMVKVIAGDDKGKTGKVLAVLPKKNRVIVEGV   42 (76)
T ss_pred             ccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEcCc
Confidence            5678788888899999999999996 6679999996

>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic

Probab=95.22  E-value=0.044  Score=39.74  Aligned_cols=58  Identities=24%  Similarity=0.441  Sum_probs=45.8

Q ss_pred             eeeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCC----CCCcc-eeeecCceeecceEEE
Q psy2756          15 FVQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPE----TGVPR-SALRLNQLHLTKLKIN   72 (112)
Q Consensus        15 fVEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~----tgV~R-q~i~~k~l~LT~~~i~   72 (112)
                      -+.-|--|.|..|+++|+...|+.|. +.++|.|+|-.    +|... -.|+..++.|+++.++
T Consensus        41 ~IkkGD~V~Vi~Gk~KGk~GkV~~V~~~~~~V~Vegvn~~k~~G~~~e~pIh~SnV~l~~l~l~  104 (114)
T TIGR01080        41 PVRKGDKVRIMRGDFKGHEGKVSKVDLKRYRIYVEGVTKEKVNGTEVPVPIHPSNVMITKLNLD  104 (114)
T ss_pred             eeecCCEEEEecCCCCCCEEEEEEEEcCCCEEEEcCeEEECCCCeEEEeeechHHeEEEeccCC
Confidence            36789999999999999999999996 67789999975    23221 3377788888887764

This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.

>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle

Probab=94.32  E-value=0.096  Score=37.19  Aligned_cols=35  Identities=26%  Similarity=0.601  Sum_probs=29.7

Q ss_pred             eeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCC
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGP   50 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP   50 (112)
                      +..|--|.|..|+++||...|..|. +.|+|+|+|=
T Consensus         4 ikkGD~V~Vi~G~dKGK~G~V~~V~~~~~~V~Vegv   39 (104)
T TIGR01079         4 IKKGDTVKVISGKDKGKRGKVLKVLPKTNKVIVEGV   39 (104)
T ss_pred             ccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEECCc
Confidence            4567777888899999999999996 5679999985

This model recognizes bacterial and organellar forms of ribosomal protein L24. It excludes eukaryotic and archaeal forms, designated L26 in eukaryotes.

>PRK00004 rplX 50S ribosomal protein L24; Reviewed

Probab=92.98  E-value=0.21  Score=35.34  Aligned_cols=55  Identities=22%  Similarity=0.495  Sum_probs=39.9

Q ss_pred             eeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCC--------------CCCcc--eeeecCceeecceE
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPE--------------TGVPR--SALRLNQLHLTKLK   70 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~--------------tgV~R--q~i~~k~l~LT~~~   70 (112)
                      +..|--|.|-.|+++||...|..|. +.|+|.|+|=.              .|+-.  ..|+++++.|++..
T Consensus         5 i~kGD~V~Vi~G~dKGk~G~V~~V~~~~~~V~Vegvn~~k~h~k~~~~~~~G~i~~~e~pI~~SnV~lv~p~   76 (105)
T PRK00004          5 IKKGDTVIVIAGKDKGKRGKVLKVLPKKNKVIVEGVNIVKKHQKPNQENPQGGIIEKEAPIHISNVALVDPK   76 (105)
T ss_pred             ccCCCEEEEeEcCCCCcEEEEEEEEcCCCEEEEcCcEEEEEecCCCCCCCCCceEEEECCcCHHHEEEEeCc
Confidence            4567778888899999999999995 67799999942              11111  25666777776643

>PRK05609 nusG transcription antitermination protein NusG; Validated

Probab=92.57  E-value=0.25  Score=36.35  Aligned_cols=38  Identities=24%  Similarity=0.346  Sum_probs=31.6

Q ss_pred             ceeeeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCC
Q psy2756          13 KRFVQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGP   50 (112)
Q Consensus        13 ~rfVEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP   50 (112)
                      ..-+++|.-|.|..||++|--+.|+.+- +.+||.|.=.
T Consensus       124 ~~~~~~Gd~VrI~~GPf~G~~g~v~~i~~~~~r~~v~l~  162 (181)
T PRK05609        124 KVDFEVGEMVRVIDGPFADFNGTVEEVDYEKSKLKVLVS  162 (181)
T ss_pred             ccCCCCCCEEEEeccCCCCCEEEEEEEeCCCCEEEEEEE
Confidence            3456899999999999999999999986 4568877654

>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal

Probab=91.52  E-value=0.35  Score=34.83  Aligned_cols=39  Identities=23%  Similarity=0.501  Sum_probs=32.1

Q ss_pred             eeeeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCCC
Q psy2756          14 RFVQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPET   52 (112)
Q Consensus        14 rfVEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~t   52 (112)
                      ...++|-.|.|..||++|-.+.|+++= +.++|+|+--..
T Consensus        85 ~~~~~Gd~V~I~~GPf~G~~g~v~~~d~~k~~v~v~l~~~  124 (145)
T TIGR00405        85 ESIKKGDIVEIISGPFKGERAKVIRVDESKEEVTLELIEA  124 (145)
T ss_pred             cccCCCCEEEEeecCCCCCeEEEEEEcCCCCEEEEEEEEc
Confidence            347899999999999999999999975 455788877653

This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.

>TIGR01955 RfaH transcriptional activator RfaH

Probab=91.33  E-value=0.36  Score=34.83  Aligned_cols=37  Identities=19%  Similarity=0.260  Sum_probs=31.0

Q ss_pred             eeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCC
Q psy2756          14 RFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGP   50 (112)
Q Consensus        14 rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP   50 (112)
                      ...++|.-|.|..||.+|-.+.|+++-+++|+.|-=.
T Consensus       107 ~~~~~G~~V~V~~GPf~g~~g~v~~~~~~~r~~v~l~  143 (159)
T TIGR01955       107 TLPYKGDKVRITDGAFAGFEAIFLEPDGEKRSMLLLN  143 (159)
T ss_pred             cCCCCCCEEEEeccCCCCcEEEEEEECCCceEEEEEh
Confidence            3467999999999999999999999866778776544

This model represents the transcriptional activator protein, RfaH. This protein is most closely related to the transcriptional termination/antitermination protein NusG (TIGR00922) and contains the KOW motif (pfam00467). This protein appears to be limited to the gamma proteobacteria. In E. coli, this gene appears to control the expression of haemolysin, sex factor and lipopolysaccharide genes.

>PTZ00194 60S ribosomal protein L26; Provisional

Probab=90.93  E-value=0.53  Score=35.56  Aligned_cols=57  Identities=21%  Similarity=0.358  Sum_probs=43.9

Q ss_pred             eeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCC----CCCcc-eeeecCceeecceEEE
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPE----TGVPR-SALRLNQLHLTKLKIN   72 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~----tgV~R-q~i~~k~l~LT~~~i~   72 (112)
                      |-.|--|.|..|.++|+..-|+.|. +.++|+|+|-.    .|=|. -.|...++.||+..++
T Consensus        47 IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~ViVEgvn~~Kk~gk~~e~PIh~SNV~iv~l~l~  109 (143)
T PTZ00194         47 VRKDDEVMVVRGHHKGREGKVTAVYRKKWVIHIEKITREKANGEPVQIGIHPSNVIITKLKLN  109 (143)
T ss_pred             eecCCEEEEecCCCCCCceEEEEEEcCCCEEEEeCeEEEecCCCEeecCcCchheEEEccccC
Confidence            6789999999999999999999996 56699999975    11111 3466677888877663

>TIGR00922 nusG transcription termination/antitermination factor NusG

Probab=90.27  E-value=0.58  Score=34.33  Aligned_cols=37  Identities=22%  Similarity=0.375  Sum_probs=30.9

Q ss_pred             eeeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCC
Q psy2756          15 FVQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPE   51 (112)
Q Consensus        15 fVEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~   51 (112)
                      .+++|.-|.|..||.+|-.+.|+.+- +++||.|.=+-
T Consensus       119 ~~~~G~~V~I~~Gpf~G~~g~v~~~~~~~~r~~V~v~~  156 (172)
T TIGR00922       119 DFEVGEQVRVNDGPFANFTGTVEEVDYEKSKLKVSVSI  156 (172)
T ss_pred             CCCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEE
Confidence            35799999999999999999999975 45688887653

Archaeal proteins once termed NusG share the KOW domain but are actually a ribosomal protein corresponding to L24p in bacterial and L26e in eukaryotes (TIGR00405).

>PRK08559 nusG transcription antitermination protein NusG; Validated

Probab=89.85  E-value=1.1  Score=32.96  Aligned_cols=51  Identities=25%  Similarity=0.488  Sum_probs=38.0

Q ss_pred             eeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCCCCCcc--eeeecCceeec
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPETGVPR--SALRLNQLHLT   67 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~tgV~R--q~i~~k~l~LT   67 (112)
                      .++|--|.|..||++|-.+.|+++= +.++++|+.=...+ +  -.++++.|.+.
T Consensus        95 ~~~G~~V~I~~Gpf~g~~g~V~~vd~~k~~v~v~ll~~~~-~~pv~v~~~~~~~~  148 (153)
T PRK08559         95 IKEGDIVELIAGPFKGEKARVVRVDESKEEVTVELLEAAV-PIPVTVRGDQVRVV  148 (153)
T ss_pred             CCCCCEEEEeccCCCCceEEEEEEcCCCCEEEEEEECCcc-eeeEEEeccEEEEe
Confidence            6799999999999999999999985 56788888764222 2  34555555544

>PRK09014 rfaH transcriptional activator RfaH; Provisional

Probab=89.47  E-value=0.64  Score=33.92  Aligned_cols=37  Identities=14%  Similarity=0.179  Sum_probs=31.6

Q ss_pred             eeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCC
Q psy2756          14 RFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGP   50 (112)
Q Consensus        14 rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP   50 (112)
                      ...++|.-|.|..||.+|-.++|+++-+++|++|.=.
T Consensus       108 ~~~~~G~~V~I~~Gp~~g~eg~v~~~~~~~r~~v~v~  144 (162)
T PRK09014        108 ETPKPGDKVIITEGAFEGLQAIYTEPDGEARSILLLN  144 (162)
T ss_pred             cCCCCCCEEEEecCCCCCcEEEEEEeCCCeEEEEeeh
Confidence            3467999999999999999999999988888777644

>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A

Probab=84.76  E-value=0.56  Score=36.90  Aligned_cols=31  Identities=26%  Similarity=0.417  Sum_probs=25.4

Q ss_pred             ceeeeeceEEEEecCCCCCceEEEEEeeeCC
Q psy2756          13 KRFVQTGRVVRISDGPYRGKLSSIVDVINQT   43 (112)
Q Consensus        13 ~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~n   43 (112)
                      .+|+.+||||.|..|-+....++||+.-..+
T Consensus        70 ~~fL~~GRlV~v~~~~~~~~wgvvv~~~~~~  100 (268)
T PF13234_consen   70 LPFLQPGRLVVVRDGDRDFGWGVVVNFAKKS  100 (268)
T ss_dssp             HHHS-TTEEEEEEETTCEEEEEEEEEEEE--
T ss_pred             HHhCCCCCEEEEecCCCccceeEEEeccccc
Confidence            4799999999999999999999999987653

>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]

Probab=83.24  E-value=2.8  Score=30.13  Aligned_cols=54  Identities=19%  Similarity=0.429  Sum_probs=41.2

Q ss_pred             eeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCC---CCCc-c------------eeeecCceeecce
Q psy2756          15 FVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE---TGVP-R------------SALRLNQLHLTKL   69 (112)
Q Consensus        15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~---tgV~-R------------q~i~~k~l~LT~~   69 (112)
                      .|--|--|+|-+|.+.||-..|+.+.-.. |+|+|-.   .-.+ +            ..|.++++.|++.
T Consensus         4 ~IrkGD~V~Vi~GkdKGk~GkVl~v~~k~-V~VEGvnv~kkh~k~~~~~~~ggii~~EapIh~SnV~i~~~   73 (104)
T COG0198           4 KVKKGDTVKVIAGKDKGKEGKVLKVLPKK-VVVEGVNVVKKHIKPSQENPEGGIINKEAPIHISNVAIIDP   73 (104)
T ss_pred             ceecCCEEEEEecCCCCcceEEEEEecCe-EEEECcEEEEecCCCCCcCCCCceeeeeecccHHHeEEecc
Confidence            46678899999999999999999998777 9999965   0111 1            3455677777775

>TIGR01956 NusG_myco NusG family protein

Probab=82.00  E-value=2.5  Score=34.67  Aligned_cols=35  Identities=26%  Similarity=0.583  Sum_probs=31.0

Q ss_pred             eeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCC
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGP   50 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP   50 (112)
                      .++|--|.|..||++|-.+.|.++- +++|+.|.=.
T Consensus       206 f~vGd~VrI~dGPF~GfeG~I~eid~~k~Rv~VlV~  241 (258)
T TIGR01956       206 FRVGNFVKIVDGPFKGIVGKIKKIDQEKKKAIVEVE  241 (258)
T ss_pred             CCCCCEEEEEecCCCCcEEEEEEEeCCCCEEEEEEE
Confidence            5799999999999999999999997 5888877655

This model represents a family of Mycoplasma proteins orthologous to the bacterial transcription termination/antitermination factor NusG. These sequences from Mycoplasma are notably diverged (long branches in a Neighbor-joining phylogenetic tree) from the bacterial species. And although NusA and ribosomal protein S10 (NusE) appear to be present, NusB may be absent in Mycoplasmas calling into question whether these species have a functional Nus system including this family as a member.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
3izs_N	138	Localization Of The Large Subunit Ribosomal Protein		7e-22
4a18_F	126	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-12
3izr_N	134	Localization Of The Large Subunit Ribosomal Protein		2e-11
3zf7_P	189	High-resolution Cryo-electron Microscopy Structure		3e-06

>pdb|3IZS|N Chain N, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 138

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 62/97 (63%)
Query: 14  RFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKINF 73
           R V+ GRVV I  G   GKL++IV++I+Q  VL+DGP+ GVPR A+ L Q+ LT L    
Sbjct: 13  RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFAL 72
Query: 74  PFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
           P  ART  V K W    V EKW+ S WA+K+A  E+R
Sbjct: 73  PRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERR 109

>pdb|4A18|F Chain F, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 126

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           F +FVQ GRVV I+ G  +GKL+ IV++INQ  +L+DG    + R  + + ++HLTK +I
Sbjct: 3   FNKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGEH--IVRQVIPIRRVHLTKFQI 60
Query: 72  -NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKR 110
            N   N RT +++K      + +K++++ +A+K A   KR
Sbjct: 61  DNVELNQRTVLLKKKIAKFDLTKKYAETSFAKKQAIKTKR 100

>pdb|3IZR|N Chain N, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 134

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 12  FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKI 71
           FKRFV+ GRV  ++ G   G+L  IVDV++Q   LVD P+  + R  +   +L LT +KI
Sbjct: 3   FKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIKI 60
Query: 72  NFPFNARTKVVRKAWKDGQVEEKWSKSLWAQKVANVEKRK 111
           +     +   + KA ++  V+ KW  S W +K+  V+KR+
Sbjct: 61  DIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLI-VQKRR 99

>pdb|3ZF7|P Chain P, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 189

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 15 FVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGP-ETGVPRSALRLNQLHLTKLKINF 73
          +++ GR+VRI  GP + ++  IVD+++   VLV+ P E  + R    L  +   K  ++ 
Sbjct: 6  YIRAGRLVRILRGPRQNRVGVIVDIVDANRVLVENPCEQKMWRHVQNLKNVEPLKFCVSI 65
Query: 74 PFNARTKVVRKAWKDGQVEEKWS 96
            N  TK +++A +  +V EK++
Sbjct: 66 SRNCSTKALKEALESKKVLEKYA 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
4a18_F	126	RPL14; ribosome, eukaryotic initiation factor 6, E	100.0
3izc_N	138	60S ribosomal protein RPL14 (L14E); eukaryotic rib	100.0
3iz5_N	134	60S ribosomal protein L14 (L14E); eukaryotic ribos	100.0
3j21_5	83	50S ribosomal protein L14E; archaea, archaeal, KIN	99.97
2joy_A	96	50S ribosomal protein L14E; protein solution struc	99.97
4a18_N	144	RPL27, ribosomal protein L22; ribosome, eukaryotic	99.8
3iz5_G	219	60S ribosomal protein L6 (L6E); eukaryotic ribosom	99.47
4a18_E	191	RPL6; ribosome, eukaryotic initiation factor 6, EI	99.25
3izc_a	136	60S ribosomal protein RPL27 (L27E); eukaryotic rib	99.24
3iz5_a	136	60S ribosomal protein L27 (L27E); eukaryotic ribos	99.22
3izc_G	176	60S ribosomal protein RPL6 (L6E); eukaryotic ribos	98.72
2e70_A	71	Transcription elongation factor SPT5; KOW motif, s	94.55
3r8s_U	102	50S ribosomal protein L24; protein biosynthesis, R	94.36
2zjr_R	115	50S ribosomal protein L24; ribosome, large ribosom	94.06
1vq8_T	120	50S ribosomal protein L24P; ribosome 50S, protein-	93.94
2zkr_t	145	60S ribosomal protein L26; protein-RNA complex, 60	93.41
2ftc_N	96	Mitochondrial ribosomal protein L24; mitochondrial	93.06
3j21_U	121	50S ribosomal protein L24P; archaea, archaeal, KIN	92.94
1nz9_A	58	Transcription antitermination protein NUSG; transc	92.48
3v2d_Y	110	50S ribosomal protein L24; ribosome associated inh	91.32
3u5e_Y	127	L33, YL33, 60S ribosomal protein L26-A; translatio	91.29
3p8b_B	152	Transcription antitermination protein NUSG; transc	90.48
3iz5_Y	150	60S ribosomal protein L26 (L24P); eukaryotic ribos	89.15
4a17_S	135	RPL26, 60S ribosomal protein L21; eukaryotic ribos	87.97
2jvv_A	181	Transcription antitermination protein NUSG; transc	87.39
2e6z_A	59	Transcription elongation factor SPT5; KOW motif, s	85.44
3bbo_W	191	Ribosomal protein L24; large ribosomal subunit, sp	84.06
2xzm_W	260	40S ribosomal protein S4; ribosome, translation; 3	81.45

>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7

Probab=100.00  E-value=7.2e-52  Score=301.87  Aligned_cols=101  Identities=37%  Similarity=0.612  Sum_probs=98.8

Q ss_pred             cccceeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCCCCCcceeeecCceeecceEEE-ecCCCChHHHHHHHHh
Q psy2756          10 GAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPETGVPRSALRLNQLHLTKLKIN-FPFNARTKVVRKAWKD   88 (112)
Q Consensus        10 m~f~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~tgV~Rq~i~~k~l~LT~~~i~-i~r~a~t~~v~ka~~~   88 (112)
                      |+|+||||+||||++++|||+||||+|||||||||||||||+  ||||++||+||+||+|+|+ |||||++++|+|||++
T Consensus         1 ~~f~rfvevGRVv~i~~G~~aGklavIVdIID~nrvLVdGp~--V~Rq~~n~k~l~LT~~~v~~i~r~a~t~~v~ka~~~   78 (126)
T 4a18_F            1 MVFNKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGEH--IVRQVIPIRRVHLTKFQIDNVELNQRTVLLKKKIAK   78 (126)
T ss_dssp             -CCCCEEETTEEEEECSSTTTTEEEEEEEEETTTEEEEEETT--EEEEEEEGGGEEEEEEECTTCCTTCCHHHHHHHHHH
T ss_pred             CCcccceecceEEEEccCCccCCEEEEEEEecCCeEEEeCCC--cccceeeccceEEcceeccccCCCCCcHHHHHHHHH
Confidence            799999999999999999999999999999999999999997  9999999999999999998 9999999999999999


Q ss_pred             cchHHHHhhcHHHHHHHHHHHhhC
Q psy2756          89 GQVEEKWSKSLWAQKVANVEKRKK  112 (112)
Q Consensus        89 a~i~~kw~~s~waKk~~~~~~R~~  112 (112)
                      ++|++||++|+||||++++++|++
T Consensus        79 a~i~~kw~~s~wakK~~~~~~Ra~  102 (126)
T 4a18_F           79 FDLTKKYAETSFAKKQAIKTKRAN  102 (126)
T ss_dssp             HTHHHHHHHSHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHhHHHHHHHHHHHHHc
Confidence            999999999999999999999985

>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.97  E-value=5.3e-32  Score=184.37  Aligned_cols=78  Identities=26%  Similarity=0.436  Sum_probs=76.4

Q ss_pred             eeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCC-CCCcceeeecCceeecceEEEecCCCChHHHHHHHHhcchH
Q psy2756          15 FVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE-TGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVE   92 (112)
Q Consensus        15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~-tgV~Rq~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~i~   92 (112)
                      |+|+||||++.+|||+||+|+||||+|+||||||||+ +||+||.+|++||+||++++++++++++++|++||++++|+
T Consensus         3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~vlV~g~~~~~v~rk~kn~khl~lt~~~i~~~~~~~~~~vrkal~~~~i~   81 (83)
T 3j21_5            3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGAGLNKVKRRRMNIKHIEPLPQKIDIPRGASDEEVRAALEKAGIS   81 (83)
T ss_dssp             CCCTTEEEECSSSSSSCCCEEEEEECSSSCEEEECCTTTTCCCEEESCSSCEEEEEECCCCSSCCTTTSHHHHHHHTCS
T ss_pred             ccccCEEEEEeecCCCCCEEEEEEEcCCCEEEEECCccCccCCeEechHHEEEeeEEEECCCCCChHHHHHHHHHccCc
Confidence            8999999999999999999999999999999999998 89999999999999999999999999999999999999985

>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A

Probab=99.97  E-value=1.9e-31  Score=185.10  Aligned_cols=84  Identities=30%  Similarity=0.448  Sum_probs=82.7

Q ss_pred             eeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCC--CCCcceeeecCceeecceEEEecCCCChHHHHHHHHhcchH
Q psy2756          15 FVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE--TGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVE   92 (112)
Q Consensus        15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~--tgV~Rq~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~i~   92 (112)
                      |+|+||||++.+|||+||+|||||++|+|+||||||+  ++++|+.+|++||+||++++++|++++++++++||+++++.
T Consensus         3 ~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vdi~~~~~~~~vrkal~~~~i~   82 (96)
T 2joy_A            3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLT   82 (96)
T ss_dssp             SSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCCCSSCCHHHHHHHHHHTTCH
T ss_pred             ccccCEEEEEeecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEEEeeEEEeCCCCCChHHHHHHHHHcchH
Confidence            7999999999999999999999999999999999998  89999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q psy2756          93 EKWSKS   98 (112)
Q Consensus        93 ~kw~~s   98 (112)
                      ++|+++
T Consensus        83 ~k~~~~   88 (96)
T 2joy_A           83 EYMKEK   88 (96)
T ss_dssp             HHHHCC
T ss_pred             HHHhhh
Confidence            999986

>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N

Probab=99.80  E-value=2.6e-20  Score=138.15  Aligned_cols=62  Identities=32%  Similarity=0.529  Sum_probs=58.6

Q ss_pred             ceeeeeceEEEEecCCCCCceEEEEEeeeC-------CeEEEeC----CC--CC-------Cccee-------eecCcee
Q psy2756          13 KRFVQTGRVVRISDGPYRGKLSSIVDVINQ-------TTVLVDG----PE--TG-------VPRSA-------LRLNQLH   65 (112)
Q Consensus        13 ~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~-------nRvLVDG----P~--tg-------V~Rq~-------i~~k~l~   65 (112)
                      .+|+|+||||++.+|||+||+||||+++|+       ++|||||    |.  |+       ++|+.       +|++||.
T Consensus         2 ~kf~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl~   81 (144)
T 4a18_N            2 AKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIM   81 (144)
T ss_dssp             CCCCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGEE
T ss_pred             CccccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeEE
Confidence            379999999999999999999999999999       8999999    98  66       88988       9999999


Q ss_pred             ecceEE--Eec
Q psy2756          66 LTKLKI--NFP   74 (112)
Q Consensus        66 LT~~~i--~i~   74 (112)
                      ||++++  +||
T Consensus        82 pTry~v~~di~   92 (144)
T 4a18_N           82 PTRYSVKELCD   92 (144)
T ss_dssp             EEEEECSTTCC
T ss_pred             EeeEEeeccCc
Confidence            999999  886

>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E

Probab=99.25  E-value=8.2e-12  Score=96.12  Aligned_cols=63  Identities=24%  Similarity=0.417  Sum_probs=60.3

Q ss_pred             cceeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCC--CCCcceeeecCceeecceEEEec
Q psy2756          12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE--TGVPRSALRLNQLHLTKLKINFP   74 (112)
Q Consensus        12 f~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~--tgV~Rq~i~~k~l~LT~~~i~i~   74 (112)
                      -..++++|+|+++..|+++||.|||+..+|.+.+||.||.  +|||.+.+|.+|+..|..+|+|+
T Consensus        41 lr~si~pGtVlIiL~Gr~~GKrvV~LKql~sgllLVtGP~~vn~vplrrvn~~~vi~TstkvDis  105 (191)
T 4a18_E           41 LRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGLLLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLT  105 (191)
T ss_dssp             CCTTCCTTEEEEECSSTTTTBEEEEEEECTTSCEEEECCTTTSSCCSEEECGGGEEEEEEECCCT
T ss_pred             hhccccCCCEEEEeccccCCCEEEEEEecCCCeEEEecCccccCCceEEEeeeeEEeeeeEeecc
Confidence            3679999999999999999999999999999999999998  89999999999999999999886

>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.55  E-value=0.086  Score=34.59  Aligned_cols=40  Identities=30%  Similarity=0.468  Sum_probs=32.7

Q ss_pred             cceeeeeceEEEEecCCCCCceEEEEEeeeCC-eEEEeCCC
Q psy2756          12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQT-TVLVDGPE   51 (112)
Q Consensus        12 f~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~n-RvLVDGP~   51 (112)
                      |.|---+|.-|.|..|||+|-++.|.|.-|.. ||..+..+
T Consensus        14 ~grd~liGktV~I~kGpyKG~~GiVkd~t~~~~RVELhs~~   54 (71)
T 2e70_A           14 RRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTC   54 (71)
T ss_dssp             CCTTSSTTSEEEECSSTTTTCEEEEEEECSSCEEEEESSSC
T ss_pred             cCccccCCCEEEEeccCCCCeEEEEEECCCCeEEEEecCCc
Confidence            44555689999999999999999999998755 77776664

>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...

Probab=94.36  E-value=0.11  Score=36.03  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=31.3

Q ss_pred             eeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCC
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE   51 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~   51 (112)
                      +..|--|.|..|+++||...|..|+-.|+|+|+|=.
T Consensus         4 IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ViVeGvN   39 (102)
T 3r8s_U            4 IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGIN   39 (102)
T ss_dssp             SCSSCEEEECSSSSTTCEEEEEEEETTTEEEETTCS
T ss_pred             ccCCCEEEEeEcCCCCeeeEEEEEEeCCEEEEeCeE
Confidence            456767788899999999999999967999999964

>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V

Probab=94.06  E-value=0.048  Score=38.41  Aligned_cols=56  Identities=20%  Similarity=0.367  Sum_probs=43.2

Q ss_pred             eeeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCCC--------------CC--cceeeecCceeecceE
Q psy2756          15 FVQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPET--------------GV--PRSALRLNQLHLTKLK   70 (112)
Q Consensus        15 fVEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~t--------------gV--~Rq~i~~k~l~LT~~~   70 (112)
                      -+..|--|.|..|+++||...|..|+ +.|+|+|+|=..              |+  .=..|.++++.|++..
T Consensus        15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv~p~   87 (115)
T 2zjr_R           15 HFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPE   87 (115)
T ss_dssp             SSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSSS
T ss_pred             cccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEEecc
Confidence            37789999999999999999999999 778999999641              11  1134566788887643

>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...

Probab=93.94  E-value=0.064  Score=38.24  Aligned_cols=56  Identities=18%  Similarity=0.367  Sum_probs=42.6

Q ss_pred             eeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCC-----CCCcceeeecCceeecceEE
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPE-----TGVPRSALRLNQLHLTKLKI   71 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~-----tgV~Rq~i~~k~l~LT~~~i   71 (112)
                      |..|--|.|..|+|.||..-|+.|. +.++|+|+|-.     .|-.=-.|...++.|++...
T Consensus        43 IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~~~~  104 (120)
T 1vq8_T           43 VNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDL  104 (120)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECSSSCEEECCBCGGGEEEEECCC
T ss_pred             ccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeCeEeEcCCCCEEEeeechHHEEEEeccC
Confidence            6779999999999999999999998 77899999972     23112345566677766543

>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=93.41  E-value=0.079  Score=38.89  Aligned_cols=56  Identities=18%  Similarity=0.457  Sum_probs=42.2

Q ss_pred             eeeceEEEEecCCCCCce-EEEEEee-eCCeEEEeCCC----CCCcc-eeeecCceeecceEE
Q psy2756          16 VQTGRVVRISDGPYRGKL-SSIVDVI-NQTTVLVDGPE----TGVPR-SALRLNQLHLTKLKI   71 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl-~vIVdIi-D~nRvLVDGP~----tgV~R-q~i~~k~l~LT~~~i   71 (112)
                      |..|--|.|..|+|.||. ..|+.|+ +.++|+|+|-.    +|+.. -.|.+.++.|++...
T Consensus        49 IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEgvn~~Kp~G~~~e~PIh~SNV~lv~~~~  111 (145)
T 2zkr_t           49 IRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKL  111 (145)
T ss_dssp             CCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTCEEECSSCCEEECCBCGGGEEECC-CC
T ss_pred             cCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEeeeEeEcCCCceEEeccCHHHEEEEcCcC
Confidence            778999999999999999 9999998 77899999975    23211 235556666666543

>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N

Probab=93.06  E-value=0.15  Score=34.86  Aligned_cols=31  Identities=35%  Similarity=0.513  Sum_probs=26.5

Q ss_pred             EEEEecCCCCCceEEEEEee-eCCeEEEeCCC
Q psy2756          21 VVRISDGPYRGKLSSIVDVI-NQTTVLVDGPE   51 (112)
Q Consensus        21 Vv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~   51 (112)
                      -|.|..|.++||...|..|+ +.|+|+|+|=.
T Consensus         3 ~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeGvN   34 (96)
T 2ftc_N            3 TVEILEGKDAGKQGKVVQVIRQRNWVVVGGLN   34 (96)
T ss_pred             EEEEeEcCCCCcEEEEEEEECCCCEEEEeCCE
Confidence            35566799999999999999 78899999953

>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=92.94  E-value=0.11  Score=37.06  Aligned_cols=56  Identities=25%  Similarity=0.497  Sum_probs=41.6

Q ss_pred             eeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCC----CCCcc-eeeecCceeecceEE
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPE----TGVPR-SALRLNQLHLTKLKI   71 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~----tgV~R-q~i~~k~l~LT~~~i   71 (112)
                      |..|--|.|..|+|+||...|+.|+ +.++|+|+|-.    .|.+. ..|.+.++.|++..+
T Consensus        46 IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEgvn~~k~~G~~~e~pIh~SNV~l~~~~~  107 (121)
T 3j21_U           46 VRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNL  107 (121)
T ss_dssp             CCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETTCEEECSSSCEEECCBCGGGEEEEECCC
T ss_pred             cccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeCeEEEecCCcEEEcccCHHHeEEEcCcc
Confidence            5678778888999999999999998 67899999964    23221 245566777766543

>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4

Probab=92.48  E-value=0.14  Score=31.01  Aligned_cols=32  Identities=22%  Similarity=0.466  Sum_probs=27.1

Q ss_pred             eeeceEEEEecCCCCCceEEEEEeeeCC-eEEE
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVINQT-TVLV   47 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIiD~n-RvLV   47 (112)
                      +++|--|.|..||++|--+.|.++-.++ |+.|
T Consensus         5 ~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V   37 (58)
T 1nz9_A            5 FREGDQVRVVSGPFADFTGTVTEINPERGKVKV   37 (58)
T ss_dssp             CCTTCEEEECSGGGTTCEEEEEEEETTTTEEEE
T ss_pred             cCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEE
Confidence            4789999999999999999999986554 6644

>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...

Probab=91.32  E-value=0.24  Score=34.63  Aligned_cols=55  Identities=22%  Similarity=0.472  Sum_probs=40.5

Q ss_pred             eeeeceEEEEecCCCCCceEEEEEeee-CCeEEEeCCC--------------CCCcc--eeeecCceeecce
Q psy2756          15 FVQTGRVVRISDGPYRGKLSSIVDVIN-QTTVLVDGPE--------------TGVPR--SALRLNQLHLTKL   69 (112)
Q Consensus        15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD-~nRvLVDGP~--------------tgV~R--q~i~~k~l~LT~~   69 (112)
                      -+..|--|.|..|+++||...|..|+- .|+|+|+|=.              .|+--  ..|.++++.|++.
T Consensus         6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv~p   77 (110)
T 3v2d_Y            6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICP   77 (110)
T ss_dssp             SCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEBCT
T ss_pred             ccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEEcC
Confidence            356787788889999999999999985 4899999843              12111  3566677777653

>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U

Probab=91.29  E-value=0.27  Score=35.37  Aligned_cols=57  Identities=25%  Similarity=0.336  Sum_probs=42.5

Q ss_pred             eeeceEEEEecCCCCCceEEEEEeeeC-CeEEEeCCC----CCCcc-eeeecCceeecceEEE
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVINQ-TTVLVDGPE----TGVPR-SALRLNQLHLTKLKIN   72 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIiD~-nRvLVDGP~----tgV~R-q~i~~k~l~LT~~~i~   72 (112)
                      |.-|--|.|..|.|.|+..-|+.|+-. ++|+|+|-.    .|... -.|...++.||+..++
T Consensus        50 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~~~~d  112 (127)
T 3u5e_Y           50 IRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLD  112 (127)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEETCEEECSSSCEEECCBCGGGEEEEECCCC
T ss_pred             ccCCCEEEEeecCCCCccceEEEEECCCCEEEEeCeEEECCCCcEEEcccchHHEEEEccccC
Confidence            556888899999999999999999864 799999953    23211 2466677777776553

>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D

Probab=90.48  E-value=0.65  Score=32.74  Aligned_cols=53  Identities=21%  Similarity=0.412  Sum_probs=37.1

Q ss_pred             eeeeceEEEEecCCCCCceEEEEEeeeC-CeEEEeCCCCCCc-ceeeecCceeec
Q psy2756          15 FVQTGRVVRISDGPYRGKLSSIVDVINQ-TTVLVDGPETGVP-RSALRLNQLHLT   67 (112)
Q Consensus        15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD~-nRvLVDGP~tgV~-Rq~i~~k~l~LT   67 (112)
                      -+++|--|.|..||++|-.+.|.++-.+ +++.|.---.|-+ --.+++.+++..
T Consensus        91 ~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i  145 (152)
T 3p8b_B           91 GLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLI  145 (152)
T ss_dssp             TCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEE
T ss_pred             cCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEe
Confidence            3579999999999999999999998644 5666655433321 134566555543

>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S

Probab=87.97  E-value=0.54  Score=34.12  Aligned_cols=56  Identities=30%  Similarity=0.449  Sum_probs=41.9

Q ss_pred             eeeceEEEEecCCCCCceEEEEEeee-CCeEEEeCCC----CCCcc-eeeecCceeecceEE
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVIN-QTTVLVDGPE----TGVPR-SALRLNQLHLTKLKI   71 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIiD-~nRvLVDGP~----tgV~R-q~i~~k~l~LT~~~i   71 (112)
                      |.-|--|.|..|.|.|+..-|+.|+- .++|+|+|-.    .|... -.|...++.||+..+
T Consensus        49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~~k~  110 (135)
T 4a17_S           49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEKISKNKLNGAPYQIPLSASQLVLTKLKL  110 (135)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCCEEETTTEEECCCBCGGGEEEEECCC
T ss_pred             ccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeCeEEEcCCCCEEEcccchHHEEEEcccC
Confidence            56688889999999999999999985 4799999964    22111 256667777777654

>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G

Probab=87.39  E-value=0.66  Score=33.44  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=29.5

Q ss_pred             eeeeceEEEEecCCCCCceEEEEEeeeC-CeE--EEeCC
Q psy2756          15 FVQTGRVVRISDGPYRGKLSSIVDVINQ-TTV--LVDGP   50 (112)
Q Consensus        15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD~-nRv--LVDGP   50 (112)
                      ..++|.-|.|..||++|--+.|.+|-++ +|+  +|+--
T Consensus       127 ~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~if  165 (181)
T 2jvv_A          127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIF  165 (181)
T ss_dssp             CCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEET
T ss_pred             cCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEEC
Confidence            4579999999999999999999998755 477  55554

>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.44  E-value=0.67  Score=28.49  Aligned_cols=31  Identities=19%  Similarity=0.367  Sum_probs=26.0

Q ss_pred             eeeceEEEEecCCCCCceEEEEEeeeCCeEEE
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVINQTTVLV   47 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLV   47 (112)
                      .++|-.|.|..||++|-.+.|.++ |..++.|
T Consensus         8 f~~GD~V~V~~Gpf~g~~G~V~ev-d~e~v~V   38 (59)
T 2e6z_A            8 FQPGDNVEVCEGELINLQGKILSV-DGNKITI   38 (59)
T ss_dssp             CCTTSEEEECSSTTTTCEEEECCC-BTTEEEE
T ss_pred             CCCCCEEEEeecCCCCCEEEEEEE-eCCEEEE
Confidence            489999999999999999999986 4456544

>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=84.06  E-value=0.11  Score=39.75  Aligned_cols=36  Identities=25%  Similarity=0.520  Sum_probs=32.6

Q ss_pred             eeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCC
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPE   51 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~   51 (112)
                      |..|--|.|..|+|+||...|..|+ +.|+|+|+|=.
T Consensus        69 IkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEGVN  105 (191)
T 3bbo_W           69 VKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLN  105 (191)
T ss_dssp             SCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSSCC
T ss_pred             eecCCEEEEeecCCCCceEEEEEEECCCCEEEEeCCE
Confidence            7789889999999999999999998 77899999964

>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W

Probab=81.45  E-value=1.9  Score=34.24  Aligned_cols=41  Identities=20%  Similarity=0.333  Sum_probs=33.6

Q ss_pred             ccccceeeeeceEEEEecCCCCCceEEEEEeeeC----CeEEEeCC
Q psy2756           9 NGAFKRFVQTGRVVRISDGPYRGKLSSIVDVINQ----TTVLVDGP   50 (112)
Q Consensus         9 ~m~f~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~----nRvLVDGP   50 (112)
                      ..-|=.| |.|-+|+|+.|.+.|+..+|+++..+    |.|.|...
T Consensus       171 I~d~ikf-e~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~  215 (260)
T 2xzm_W          171 IENFAHL-ESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDA  215 (260)
T ss_dssp             EECCCBC-CSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECT
T ss_pred             eeeEEEe-cCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeC
Confidence            3445566 99999999999999999999997666    67888543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d2joya1	96	b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolob	2e-26

>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L14e
domain: Ribosomal protein L14e
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 91.7 bits (228), Expect = 2e-26
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 15 FVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPE--TGVPRSALRLNQLHLTKLKIN 72
           ++ GR+     G   G    IVD+I+   VLV GP+  TGV R  + +  L  T  KI+
Sbjct: 3  AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKID 62

Query: 73 FPFNARTKVVRKAWKDGQVEEKWSKS 98
              A  + V+K  ++  + E   + 
Sbjct: 63 IQKGASDEEVKKKLEESNLTEYMKEK 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d2joya1	96	Ribosomal protein L14e {Sulfolobus solfataricus [T	100.0
d2gycs1	99	Ribosomal proteins L24 (L24p) {Escherichia coli [T	95.14
d2zjrr1	110	Ribosomal proteins L24 (L24p) {Deinococcus radiodu	95.08
d1vqot1	119	Ribosomal proteins L24 (L24p) {Archaeon Haloarcula	93.89
d1nppa2	58	N-utilization substance G protein NusG, C-terminal	93.86
d1nz9a_	58	N-utilization substance G protein NusG, C-terminal	91.6
d2do3a1	62	Transcription elongation factor SPT5 {Human (Homo	87.24
d2j01y1	101	Ribosomal proteins L24 (L24p) {Thermus thermophilu	83.91

>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L14e
domain: Ribosomal protein L14e
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.3e-39  Score=226.09  Aligned_cols=84  Identities=30%  Similarity=0.433  Sum_probs=82.0

Q ss_pred             eeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCC--CCCCcceeeecCceeecceEEEecCCCChHHHHHHHHhcchH
Q psy2756          15 FVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGP--ETGVPRSALRLNQLHLTKLKINFPFNARTKVVRKAWKDGQVE   92 (112)
Q Consensus        15 fVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP--~tgV~Rq~i~~k~l~LT~~~i~i~r~a~t~~v~ka~~~a~i~   92 (112)
                      +||+||||++++|||+||+|||||||||||+|||||  +||||||+||++|++||+++|+|||++++++|++||+++++.
T Consensus         3 ~VevGrV~ii~~G~~~GK~~vIvdiid~~rvLVdGP~~~tgV~r~~in~k~l~lT~~~i~i~~~a~~~~v~ka~~~~~i~   82 (96)
T d2joya1           3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLT   82 (96)
T ss_dssp             SSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCCCSSCCHHHHHHHHHHTTCH
T ss_pred             ceeccEEEEEeecCCCCCEEEEEEEecCCeEEEecccccCCcccEEEchHHEEeccEEEEccCCCCcHHHHHHHHhcCcH
Confidence            599999999999999999999999999999999999  499999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q psy2756          93 EKWSKS   98 (112)
Q Consensus        93 ~kw~~s   98 (112)
                      ++|++.
T Consensus        83 ~kw~e~   88 (96)
T d2joya1          83 EYMKEK   88 (96)
T ss_dssp             HHHHCC
T ss_pred             HHHhhc
Confidence            999985

>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.008  Score=39.92  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=30.3

Q ss_pred             eceEEEEecCCCCCceEEEEEeeeCCeEEEeCC
Q psy2756          18 TGRVVRISDGPYRGKLSSIVDVINQTTVLVDGP   50 (112)
Q Consensus        18 vGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP   50 (112)
                      .|--|.|.+|.+.||...|..|+..|+|+|+|-
T Consensus         4 kGD~V~VisGkdKGK~G~V~~V~~~~~viVeGv   36 (99)
T d2gycs1           4 RDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGI   36 (99)
T ss_dssp             TTSEEECSSSTTTTCEEEEEEECTTSEEEETTC
T ss_pred             CCCEEEEeeCCCCCCceEEEEEECCCeEEEeCe
Confidence            467788999999999999999999999999994

>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.08  E-value=0.014  Score=39.39  Aligned_cols=35  Identities=20%  Similarity=0.442  Sum_probs=31.6

Q ss_pred             eeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCC
Q psy2756          17 QTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPE   51 (112)
Q Consensus        17 EvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~   51 (112)
                      ..|--|.|.+|.+.||...|..|+ +.|+|+|+|-.
T Consensus        14 kkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVeGvN   49 (110)
T d2zjrr1          14 KKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVN   49 (110)
T ss_dssp             CTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSC
T ss_pred             eCCCEEEEeecCCCCcceEEEEEECCCCEEEEeCcE
Confidence            459999999999999999999999 68899999953

>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.89  E-value=0.028  Score=38.36  Aligned_cols=55  Identities=20%  Similarity=0.400  Sum_probs=41.2

Q ss_pred             eeeceEEEEecCCCCCceEEEEEee-eCCeEEEeCCCC----CC-cceeeecCceeecceE
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVI-NQTTVLVDGPET----GV-PRSALRLNQLHLTKLK   70 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIi-D~nRvLVDGP~t----gV-~Rq~i~~k~l~LT~~~   70 (112)
                      |..|-.|.|..|.+.||...|+.|. +.++|+|+|-.-    |= .-..|...++.|++..
T Consensus        42 IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~V~Vegin~~k~~~k~~~~pIh~SNv~i~~~~  102 (119)
T d1vqot1          42 VNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLD  102 (119)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECTTSCEEECCBCGGGEEEEECC
T ss_pred             eeCCCEEEEeecCCCCCcceEEEEECCCCEEEEeCcEEEecCCceeeccCchHHEEEEeCc
Confidence            4578999999999999999999985 678999999751    11 1134666677766654

>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.86  E-value=0.038  Score=32.87  Aligned_cols=32  Identities=22%  Similarity=0.457  Sum_probs=27.0

Q ss_pred             eeeceEEEEecCCCCCceEEEEEeeeC-CeEEE
Q psy2756          16 VQTGRVVRISDGPYRGKLSSIVDVINQ-TTVLV   47 (112)
Q Consensus        16 VEvGRVv~i~~Gp~aGKl~vIVdIiD~-nRvLV   47 (112)
                      .++|--|.|..||++|-.+.|.++-+. .||-|
T Consensus         5 f~~Gd~V~I~~GpF~g~~g~V~~i~~~~~rv~V   37 (58)
T d1nppa2           5 FEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV   37 (58)
T ss_dssp             CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEE
T ss_pred             ccCCCEEEEcccCCCCCEEEEEEEcCCCCEEEE
Confidence            368999999999999999999998864 56544

>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.60  E-value=0.093  Score=31.10  Aligned_cols=31  Identities=23%  Similarity=0.470  Sum_probs=26.1

Q ss_pred             eeceEEEEecCCCCCceEEEEEeeeC-CeEEE
Q psy2756          17 QTGRVVRISDGPYRGKLSSIVDVINQ-TTVLV   47 (112)
Q Consensus        17 EvGRVv~i~~Gp~aGKl~vIVdIiD~-nRvLV   47 (112)
                      ++|--|.|..||++|-.+.|.++-.. .||-|
T Consensus         6 ~~Gd~V~I~~GpF~g~~g~V~~i~~~k~rv~V   37 (58)
T d1nz9a_           6 REGDQVRVVSGPFADFTGTVTEINPERGKVKV   37 (58)
T ss_dssp             CTTCEEEECSGGGTTCEEEEEEEETTTTEEEE
T ss_pred             cCCCEEEEeccCCCCCEEEEEEEcCCCCEEEE
Confidence            68999999999999999999999755 45533

>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: SPT5 KOW domain-like
domain: Transcription elongation factor SPT5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.24  E-value=0.36  Score=29.38  Aligned_cols=40  Identities=23%  Similarity=0.455  Sum_probs=33.8

Q ss_pred             cceeeeeceEEEEecCCCCCceEEEEEeeeCCeEEEeCCCC
Q psy2756          12 FKRFVQTGRVVRISDGPYRGKLSSIVDVINQTTVLVDGPET   52 (112)
Q Consensus        12 f~rfVEvGRVv~i~~Gp~aGKl~vIVdIiD~nRvLVDGP~t   52 (112)
                      .+++.++|-=|.+..|.|+|....||.+ ++++|.+=.+.|
T Consensus         7 LrK~F~~GDhVkVi~G~~~g~tGlVV~v-~~~~v~~~SD~t   46 (62)
T d2do3a1           7 LRKYFKMGDHVKVIAGRFEGDTGLIVRV-EENFVILFSDLT   46 (62)
T ss_dssp             CCSSCCTTCEEEESSSTTTTCEEEEEEE-CSSCEEEEESSS
T ss_pred             heeccCCCCeEEEeccEEcCccEEEEEE-eCCEEEEEeCCC
Confidence            4678899999999999999999999998 677777766643

>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L24 (L24p)
species: Thermus thermophilus [TaxId: 274]

Probab=83.91  E-value=0.038  Score=36.58  Aligned_cols=35  Identities=26%  Similarity=0.662  Sum_probs=30.3

Q ss_pred             eeceEEEEecCCCCCceEEEEEeeeC-CeEEEeCCC
Q psy2756          17 QTGRVVRISDGPYRGKLSSIVDVINQ-TTVLVDGPE   51 (112)
Q Consensus        17 EvGRVv~i~~Gp~aGKl~vIVdIiD~-nRvLVDGP~   51 (112)
                      ..|--|.|.+|.+.||...|..|+-. |+|+|+|=.
T Consensus         7 kkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVeGvN   42 (101)
T d2j01y1           7 KKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVN   42 (101)
T ss_dssp             CCSSCEECCSSTTSSCCBSCCCCCCTTCBCCTTSCC
T ss_pred             ECCCEEEEeeCCCCCCeEEEEEEECCCCEEEEEcce
Confidence            45777889999999999999999954 899999954