Psyllid ID: psy3184

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRDE
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHcccccccccEEEccccHHHHcccccccEEEEEcccccccccccccEEEcccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccccccHHHHHcccccccccHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHEEEEcccccEEEEcccccEEcccccEEEEccccHHHHcHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHcccHHHHcccccccHHHHHccccHccccHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MDNDFLKNLDTLQVKEMVESMHQAeykadnyvitegeagndlfvsaegefqvikdgkilrllsgrppfcvmndpmqTYNMIINVGidnifsrppfcvmndpmqTYNMIINVgidkipfpkhvTRTAQSLIKALCKespaerlgyqrggivdikkhkwfqgfdwdglrnqtltppiipvasilrde
Flexible Loop (DISEMBL)
MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCkespaerlgyqrggivdiKKHKWFQGFDwdglrnqtltppiipvasilrde
Low Complexity Region (SEG)
MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRDE
Disordered region (IsUnstruct)
*********************HQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASI****
Disordered Region (DISOPRED)
**NDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP*A******
Disordered Region (DISEMBL)
MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRDE
Disordered Region (DISPRO)
*DNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q03042	768	cGMP-dependent protein ki	yes	N/A	0.459	0.110	0.647	4e-27
P32023	934	cGMP-dependent protein ki	no	N/A	0.767	0.152	0.415	1e-26
Q03043	1088	cGMP-dependent protein ki	no	N/A	0.767	0.130	0.415	3e-26
P00516	671	cGMP-dependent protein ki	yes	N/A	0.464	0.128	0.595	3e-24
P0C605	671	cGMP-dependent protein ki	yes	N/A	0.464	0.128	0.595	4e-24
Q13976	671	cGMP-dependent protein ki	yes	N/A	0.464	0.128	0.595	4e-24
O77676	671	cGMP-dependent protein ki	yes	N/A	0.464	0.128	0.595	4e-24
O76360	780	cGMP-dependent protein ki	yes	N/A	0.918	0.217	0.340	6e-24
A8X6H1	749	cGMP-dependent protein ki	N/A	N/A	0.902	0.222	0.340	7e-24
Q13237	762	cGMP-dependent protein ki	no	N/A	0.718	0.174	0.346	3e-19

>sp|Q03042|KGP1_DROME cGMP-dependent protein kinase, isozyme 1 OS=Drosophila melanogaster GN=Pkg21D PE=1 SV=2

 Score =  120 bits (302), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/88 (64%), Positives = 67/88 (76%), Gaps = 3/88 (3%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF    DPMQTYN+I+  GID I FPKH++R A  LIK LC++ P+ERLGYQ GGI DI
Sbjct: 654 PPFSA-PDPMQTYNLILK-GIDMIAFPKHISRWAVQLIKRLCRDVPSERLGYQTGGIQDI 711

Query: 153 KKHKWFQGFDWDGLRNQTLTPPII-PVA 179
           KKHKWF GFDWDGL +Q L PP + P+A
Sbjct: 712 KKHKWFLGFDWDGLASQLLIPPFVRPIA 739

Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1EC: 2

>sp|P32023|KGP25_DROME cGMP-dependent protein kinase, isozyme 2 forms cD5/T2 OS=Drosophila melanogaster GN=for PE=2 SV=3

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 93/159 (58%), Gaps = 17/159 (10%)

Query: 41  DLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTY-NMIINVGID------------ 87
           +L ++  G  +++  G   +L +GR  +     P      +I+N G D            
Sbjct: 752 NLLLNERGYVKLVDFGFAKKLQTGRKTWTFCGTPEYVAPEVILNRGHDISADYWSLGVLM 811

Query: 88  --NIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ 145
              +   PPF   +DPM+TYN+I+  GID I FP+++TR A +LIK LC+++PAERLGYQ
Sbjct: 812 FELLTGTPPF-TGSDPMRTYNIILK-GIDAIEFPRNITRNASNLIKKLCRDNPAERLGYQ 869

Query: 146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD 184
           RGGI +I+KHKWF GF W GL+N TL PPI P    + D
Sbjct: 870 RGGISEIQKHKWFDGFYWWGLQNCTLEPPIKPAVKSVVD 908

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q03043|KGP24_DROME cGMP-dependent protein kinase, isozyme 2 forms cD4/T1/T3A/T3B OS=Drosophila melanogaster GN=for PE=1 SV=3

 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 93/159 (58%), Gaps = 17/159 (10%)

Query: 41   DLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTY-NMIINVGID------------ 87
            +L ++  G  +++  G   +L +GR  +     P      +I+N G D            
Sbjct: 906  NLLLNERGYVKLVDFGFAKKLQTGRKTWTFCGTPEYVAPEVILNRGHDISADYWSLGVLM 965

Query: 88   --NIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ 145
               +   PPF   +DPM+TYN+I+  GID I FP+++TR A +LIK LC+++PAERLGYQ
Sbjct: 966  FELLTGTPPF-TGSDPMRTYNIILK-GIDAIEFPRNITRNASNLIKKLCRDNPAERLGYQ 1023

Query: 146  RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD 184
            RGGI +I+KHKWF GF W GL+N TL PPI P    + D
Sbjct: 1024 RGGISEIQKHKWFDGFYWWGLQNCTLEPPIKPAVKSVVD 1062

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|P00516|KGP1_BOVIN cGMP-dependent protein kinase 1 OS=Bos taurus GN=PRKG1 PE=1 SV=2

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 69/89 (77%), Gaps = 3/89 (3%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF    DPM+TYN+I+  GID I FPK + + A +LIK LC+++P+ERLG  + G+ DI
Sbjct: 556 PPFS-GPDPMKTYNIILR-GIDMIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDI 613

Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP-VAS 180
           +KHKWF+GF+W+GLR  TLTPPIIP VAS
Sbjct: 614 QKHKWFEGFNWEGLRKGTLTPPIIPSVAS 642

Serine/threonine protein kinasethat acts as key mediator of the nitric oxide (NO)/cGMP signaling pathway. GMP binding activates PRKG1, which phosphorylates serines and threonines on many cellular proteins. Numerous protein targets for PRKG1 phosphorylation are implicated in modulating cellular calcium, but the contribution of each of these targets may vary substantially among cell types. Proteins that are phosphorylated by PRKG1 regulate platelet activation and adhesion, smooth muscle contraction, cardiac function, gene expression, feedback of the NO-signaling pathway, and other processes involved in several aspects of the CNS like axon guidance, hippocampal and cerebellar learning, circadian rhythm and nociception. Smoth muscle relaxation is mediated through lowering of intracellular free calcium, by desensitization of contractile proteins to calcium, and by decrease in the contractile state of smooth muscle or in platelet activation. Regulates intracellular calcium levels via several pathways: phosphorylates MRVI1/IRAG and inhibits IP3-induced Ca(2+) release from intracellular stores, phosphorylation of KCNMA1 (BKCa) channels decreases intracellular Ca(2+) levels, which leads to increased opening of this channel. PRKG1 phosphorylates the canonical transient receptor potential channel (TRPC) family which inactivates the associated inward calcium current. Another mode of action of NO/cGMP/PKGI signaling involves PKGI-mediated inactivation of the Ras homolog gene family member A (RhoA). Phosphorylation of RHOA by PRKG1 blocks the action of this protein in myriad processes: regulation of RHOA translocation; decreasing contraction; controlling vesicle trafficking, reduction of myosin light chain phosphorylation resulting in vasorelaxation. Activation of PRKG1 by NO signaling alters also gene expression in a number of tissues. In smooth muscle cells, increased cGMP and PRKG1 activity influence expression of smooth muscle-specific contractile proteins, levels of proteins in the NO/cGMP signaling pathway, down-regulation of the matrix proteins osteopontin and thrombospondin-1 to limit smooth muscle cell migration and phenotype. Regulates vasodilator-stimulated phosphoprotein (VASP) functions in platelets and smooth muscle.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|P0C605|KGP1_MOUSE cGMP-dependent protein kinase 1 OS=Mus musculus GN=Prkg1 PE=1 SV=1

 Score =  110 bits (276), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 69/89 (77%), Gaps = 3/89 (3%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF    DPM+TYN+I+  GID I FPK + + A +LIK LC+++P+ERLG  + G+ DI
Sbjct: 556 PPFS-GPDPMKTYNIILR-GIDMIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDI 613

Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP-VAS 180
           +KHKWF+GF+W+GLR  TLTPPIIP VAS
Sbjct: 614 QKHKWFEGFNWEGLRKGTLTPPIIPSVAS 642

Serine/threonine protein kinasethat acts as key mediator of the nitric oxide (NO)/cGMP signaling pathway. GMP binding activates PRKG1, which phosphorylates serines and threonines on many cellular proteins. Numerous protein targets for PRKG1 phosphorylation are implicated in modulating cellular calcium, but the contribution of each of these targets may vary substantially among cell types. Proteins that are phosphorylated by PRKG1 regulate platelet activation and adhesion, smooth muscle contraction, cardiac function, gene expression, feedback of the NO-signaling pathway, and other processes involved in several aspects of the CNS like axon guidance, hippocampal and cerebellar learning, circadian rhythm and nociception. Smoth muscle relaxation is mediated through lowering of intracellular free calcium, by desensitization of contractile proteins to calcium, and by decrease in the contractile state of smooth muscle or in platelet activation. Regulates intracellular calcium levels via several pathways: phosphorylates MRVI1/IRAG and inhibits IP3-induced Ca(2+) release from intracellular stores, phosphorylation of KCNMA1 (BKCa) channels decreases intracellular Ca(2+) levels, which leads to increased opening of this channel. PRKG1 phosphorylates the canonical transient receptor potential channel (TRPC) family which inactivates the associated inward calcium current. Another mode of action of NO/cGMP/PKGI signaling involves PKGI-mediated inactivation of the Ras homolog gene family member A (RhoA). Phosphorylation of RHOA by PRKG1 blocks the action of this protein in myriad processes: regulation of RHOA translocation; decreasing contraction; controlling vesicle trafficking, reduction of myosin light chain phosphorylation resulting in vasorelaxation. Activation of PRKG1 by NO signaling alters also gene expression in a number of tissues. In smooth muscle cells, increased cGMP and PRKG1 activity influence expression of smooth muscle-specific contractile proteins, levels of proteins in the NO/cGMP signaling pathway, down-regulation of the matrix proteins osteopontin and thrombospondin-1 to limit smooth muscle cell migration and phenotype. Regulates vasodilator-stimulated phosphoprotein (VASP) functions in platelets and smooth muscle.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q13976|KGP1_HUMAN cGMP-dependent protein kinase 1 OS=Homo sapiens GN=PRKG1 PE=1 SV=3

 Score =  110 bits (276), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 69/89 (77%), Gaps = 3/89 (3%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF    DPM+TYN+I+  GID I FPK + + A +LIK LC+++P+ERLG  + G+ DI
Sbjct: 556 PPFS-GPDPMKTYNIILR-GIDMIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDI 613

Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP-VAS 180
           +KHKWF+GF+W+GLR  TLTPPIIP VAS
Sbjct: 614 QKHKWFEGFNWEGLRKGTLTPPIIPSVAS 642

Serine/threonine protein kinasethat acts as key mediator of the nitric oxide (NO)/cGMP signaling pathway. GMP binding activates PRKG1, which phosphorylates serines and threonines on many cellular proteins. Numerous protein targets for PRKG1 phosphorylation are implicated in modulating cellular calcium, but the contribution of each of these targets may vary substantially among cell types. Proteins that are phosphorylated by PRKG1 regulate platelet activation and adhesion, smooth muscle contraction, cardiac function, gene expression, feedback of the NO-signaling pathway, and other processes involved in several aspects of the CNS like axon guidance, hippocampal and cerebellar learning, circadian rhythm and nociception. Smoth muscle relaxation is mediated through lowering of intracellular free calcium, by desensitization of contractile proteins to calcium, and by decrease in the contractile state of smooth muscle or in platelet activation. Regulates intracellular calcium levels via several pathways: phosphorylates MRVI1/IRAG and inhibits IP3-induced Ca(2+) release from intracellular stores, phosphorylation of KCNMA1 (BKCa) channels decreases intracellular Ca(2+) levels, which leads to increased opening of this channel. PRKG1 phosphorylates the canonical transient receptor potential channel (TRPC) family which inactivates the associated inward calcium current. Another mode of action of NO/cGMP/PKGI signaling involves PKGI-mediated inactivation of the Ras homolog gene family member A (RhoA). Phosphorylation of RHOA by PRKG1 blocks the action of this protein in myriad processes: regulation of RHOA translocation; decreasing contraction; controlling vesicle trafficking, reduction of myosin light chain phosphorylation resulting in vasorelaxation. Activation of PRKG1 by NO signaling alters also gene expression in a number of tissues. In smooth muscle cells, increased cGMP and PRKG1 activity influence expression of smooth muscle-specific contractile proteins, levels of proteins in the NO/cGMP signaling pathway, down-regulation of the matrix proteins osteopontin and thrombospondin-1 to limit smooth muscle cell migration and phenotype. Regulates vasodilator-stimulated phosphoprotein (VASP) functions in platelets and smooth muscle.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|O77676|KGP1_RABIT cGMP-dependent protein kinase 1 OS=Oryctolagus cuniculus GN=PRKG1 PE=1 SV=3

 Score =  110 bits (276), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 69/89 (77%), Gaps = 3/89 (3%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF    DPM+TYN+I+  GID I FPK + + A +LIK LC+++P+ERLG  + G+ DI
Sbjct: 556 PPFS-GPDPMKTYNIILR-GIDMIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDI 613

Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP-VAS 180
           +KHKWF+GF+W+GLR  TLTPPIIP VAS
Sbjct: 614 QKHKWFEGFNWEGLRKGTLTPPIIPSVAS 642

Serine/threonine protein kinasethat acts as key mediator of the nitric oxide (NO)/cGMP signaling pathway. GMP binding activates PRKG1, which phosphorylates serines and threonines on many cellular proteins. Numerous protein targets for PRKG1 phosphorylation are implicated in modulating cellular calcium, but the contribution of each of these targets may vary substantially among cell types. Proteins that are phosphorylated by PRKG1 regulate platelet activation and adhesion, smooth muscle contraction, cardiac function, gene expression, feedback of the NO-signaling pathway, and other processes involved in several aspects of the CNS like axon guidance, hippocampal and cerebellar learning, circadian rhythm and nociception. Smoth muscle relaxation is mediated through lowering of intracellular free calcium, by desensitization of contractile proteins to calcium, and by decrease in the contractile state of smooth muscle or in platelet activation. Regulates intracellular calcium levels via several pathways: phosphorylates MRVI1/IRAG and inhibits IP3-induced Ca(2+) release from intracellular stores, phosphorylation of KCNMA1 (BKCa) channels decreases intracellular Ca(2+) levels, which leads to increased opening of this channel. PRKG1 phosphorylates the canonical transient receptor potential channel (TRPC) family which inactivates the associated inward calcium current. Another mode of action of NO/cGMP/PKGI signaling involves PKGI-mediated inactivation of the Ras homolog gene family member A (RhoA). Phosphorylation of RHOA by PRKG1 blocks the action of this protein in myriad processes: regulation of RHOA translocation; decreasing contraction; controlling vesicle trafficking, reduction of myosin light chain phosphorylation resulting in vasorelaxation. Activation of PRKG1 by NO signaling alters also gene expression in a number of tissues. In smooth muscle cells, increased cGMP and PRKG1 activity influence expression of smooth muscle-specific contractile proteins, levels of proteins in the NO/cGMP signaling pathway, down-regulation of the matrix proteins osteopontin and thrombospondin-1 to limit smooth muscle cell migration and phenotype. Regulates vasodilator-stimulated phosphoprotein (VASP) functions in platelets and smooth muscle.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|O76360|EGL4_CAEEL cGMP-dependent protein kinase egl-4 OS=Caenorhabditis elegans GN=egl-4 PE=1 SV=2

 Score =  110 bits (275), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 103/194 (53%), Gaps = 24/194 (12%)

Query: 3   NDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLL 62
           +D+        V E +E +H+      N V  + +  N L  +  G  +++  G   +L 
Sbjct: 566 DDYTARFYVACVLEGLEYLHRK-----NIVYRDLKPENCLLANT-GYLKLVDFGFAKKLA 619

Query: 63  SGRPPFCVMNDPMQTY-NMIINVGIDN--------------IFSRPPFCVMNDPMQTYNM 107
           SGR  +     P      +I+N G D               +  RPPF   +DPM+TY +
Sbjct: 620 SGRKTWTFCGTPEYVSPEIILNKGHDQAADYWALGIYICELMLGRPPFQA-SDPMKTYTL 678

Query: 108 IINVGIDKIPFP-KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGL 166
           I+  G+D +  P + + +TA +L+K LC+++P ERLG   GG+ DI+KH+WF GFDW+GL
Sbjct: 679 ILK-GVDALEIPNRRIGKTATALVKKLCRDNPGERLGSGSGGVNDIRKHRWFMGFDWEGL 737

Query: 167 RNQTLTPPIIPVAS 180
           R++TL PPI+P  S
Sbjct: 738 RSRTLKPPILPKVS 751

Promotes chemoreceptor gene expression in response to increased cGMP levels by antagonizing the gene repression functions of the class II HDAC hda-4 and the mef-2 transcription factor. Represses body size and lifespan through the dbl-1 and insulin pathways, respectively. May also signal through daf-3 and/or daf-5. Role in egg-laying and dauer formation.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|A8X6H1|EGL4_CAEBR cGMP-dependent protein kinase egl-4 OS=Caenorhabditis briggsae GN=egl-4 PE=3 SV=2

 Score =  110 bits (274), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 102/191 (53%), Gaps = 24/191 (12%)

Query: 3   NDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLL 62
           +D+        V E +E +H+      N V  + +  N L  ++ G  +++  G   +L 
Sbjct: 535 DDYTARFYVACVLEGLEYLHRK-----NIVYRDLKPENCLLANS-GYLKLVDFGFAKKLA 588

Query: 63  SGRPPFCVMNDPMQTY-NMIINVGIDN--------------IFSRPPFCVMNDPMQTYNM 107
           SGR  +     P      +I+N G D               +  RPPF   +DPM+TY +
Sbjct: 589 SGRKTWTFCGTPEYVSPEIILNKGHDQAADYWALGIYICELMLGRPPFQA-SDPMKTYTL 647

Query: 108 IINVGIDKIPFP-KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGL 166
           I+  G+D +  P + + +TA +L+K LC+++P ERLG   GG+ DI+KH+WF GFDW+GL
Sbjct: 648 ILK-GVDALEIPNRRIGKTATALVKKLCRDNPGERLGSGSGGVNDIRKHRWFMGFDWEGL 706

Query: 167 RNQTLTPPIIP 177
           R +TL PPI+P
Sbjct: 707 RTKTLKPPILP 717

Promotes chemoreceptor gene expression in response to increased cGMP levels by antagonizing the gene repression functions of the class II HDAC hda-4 and the mef-2 transcription factor. Represses body size and lifespan through the dbl-1 and insulin pathways, respectively. May also signal through daf-3 and/or daf-5. Role in egg-laying and dauer formation.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q13237|KGP2_HUMAN cGMP-dependent protein kinase 2 OS=Homo sapiens GN=PRKG2 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 17/150 (11%)

Query: 41  DLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTY-NMIINVGIDN----------- 88
           +L + AEG  +++  G   ++ SG+  +     P      +I+N G D            
Sbjct: 581 NLILDAEGYLKLVDFGFAKKIGSGQKTWTFCGTPEYVAPEVILNKGHDFSVDFWSLGILV 640

Query: 89  ---IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ 145
              +   PPF  + D M TYN+I+  GI+K+ FP+ +TR  + LI+ LC+++P ERLG  
Sbjct: 641 YELLTGNPPFSGV-DQMMTYNLILK-GIEKMDFPRKITRRPEDLIRRLCRQNPTERLGNL 698

Query: 146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 175
           + GI DIKKH+W  GF+W+GL+ ++L  P+
Sbjct: 699 KNGINDIKKHRWLNGFNWEGLKARSLPSPL 728

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
242024535	1045	cGMP-dependent protein kinase, isozyme,	0.454	0.080	0.674	7e-29
115394122	732	foraging [Diabrotica virgifera virgifera	0.486	0.122	0.619	7e-28
402502111	634	cGMP-dependent protein kinase, partial [	0.486	0.141	0.619	3e-27
157111148	1288	cgmp-dependent protein kinase [Aedes aeg	0.448	0.064	0.670	4e-27
321473349	685	hypothetical protein DAPPUDRAFT_194528 [	0.902	0.243	0.378	8e-27
189240304	727	PREDICTED: similar to foraging CG10033-P	0.729	0.185	0.434	8e-27
321476601	655	hypothetical protein DAPPUDRAFT_207381 [	0.454	0.128	0.686	1e-26
270012370	535	hypothetical protein TcasGA2_TC006513 [T	0.729	0.252	0.434	1e-26
340723955	722	PREDICTED: cGMP-dependent protein kinase	0.735	0.188	0.424	2e-26
350422649	668	PREDICTED: cGMP-dependent protein kinase	0.735	0.203	0.424	2e-26

>gi|242024535|ref|XP_002432683.1| cGMP-dependent protein kinase, isozyme, putative [Pediculus humanus corporis] gi|212518153|gb|EEB19945.1| cGMP-dependent protein kinase, isozyme, putative [Pediculus humanus corporis]

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%), Gaps = 2/86 (2%)

Query: 93   PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
            PPF    DPM+TYN+I+  GID I FPKH+T+ AQSLIK LC++SP+ERLGYQRGGI DI
Sbjct: 931  PPFAAP-DPMRTYNIILK-GIDVIDFPKHITKGAQSLIKRLCRDSPSERLGYQRGGIQDI 988

Query: 153  KKHKWFQGFDWDGLRNQTLTPPIIPV 178
            KKHKWFQGFDW GL+ + L PP+ P+
Sbjct: 989  KKHKWFQGFDWSGLKQRALIPPVAPI 1014

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|115394122|gb|ABI97017.1| foraging [Diabrotica virgifera virgifera]

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 74/92 (80%), Gaps = 2/92 (2%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   +DPM+TYN+I+  GID+I FP+ +TR AQ+LIK LC+++PAERLGYQ+GGI DI
Sbjct: 617 PPF-TGSDPMRTYNIILK-GIDQIDFPRSITRNAQALIKRLCRDNPAERLGYQKGGISDI 674

Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIPVASILRD 184
           +KHKWF GF+W+GL  +TLTPPIIP    + D
Sbjct: 675 QKHKWFDGFNWEGLVTRTLTPPIIPTVQCVTD 706

Source: Diabrotica virgifera virgifera

Species: Diabrotica virgifera

Genus: Diabrotica

Family: Chrysomelidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|402502111|gb|ADP94162.2| cGMP-dependent protein kinase, partial [Schistocerca gregaria]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 73/92 (79%), Gaps = 2/92 (2%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF    DPM+TYN+I+  GID I FP+ +TR A +LIK LC+++PAERLGYQ+GGI +I
Sbjct: 519 PPF-TGADPMKTYNIILK-GIDAIDFPRTITRNAMALIKKLCRDNPAERLGYQKGGISEI 576

Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIPVASILRD 184
           +KHKWF GF+W+GLRN TLTPPI+PV   + D
Sbjct: 577 QKHKWFDGFNWEGLRNLTLTPPIVPVVRNVTD 608

Source: Schistocerca gregaria

Species: Schistocerca gregaria

Genus: Schistocerca

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157111148|ref|XP_001651409.1| cgmp-dependent protein kinase [Aedes aegypti] gi|108878512|gb|EAT42737.1| AAEL005754-PA [Aedes aegypti]

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 67/85 (78%), Gaps = 2/85 (2%)

Query: 93   PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
            PPF    DPM+TYN+I+  GID + FPKH++R A SLIK LC++ P ERLGYQRGGI DI
Sbjct: 1174 PPFAAA-DPMKTYNIILK-GIDMVNFPKHMSRAAVSLIKRLCRDVPTERLGYQRGGIQDI 1231

Query: 153  KKHKWFQGFDWDGLRNQTLTPPIIP 177
            KKHKWFQGFDW+GL NQTL  P+ P
Sbjct: 1232 KKHKWFQGFDWEGLANQTLKSPLQP 1256

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321473349|gb|EFX84317.1| hypothetical protein DAPPUDRAFT_194528 [Daphnia pulex]

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 104/190 (54%), Gaps = 23/190 (12%)

Query: 3   NDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLL 62
           +D+     T  V E  E +H         +I       +L +   G  +++  G   +L 
Sbjct: 471 DDYTTRFYTACVVEAFEYLHS------RGIIYRDLKPENLLLDTHGYVKLVDFGFAKKLQ 524

Query: 63  SGRPPFCVMNDPMQTY-NMIINVGID--------------NIFSRPPFCVMNDPMQTYNM 107
           +GR  +     P      +I+N G D               +   PPF  + DPM+TYN+
Sbjct: 525 AGRKTWTFCGTPEYVAPEVILNKGHDISADYWSLGVLMFELLTGTPPFTGL-DPMKTYNI 583

Query: 108 IINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLR 167
           I+  GID + FP+++TR A +LIK LC+++P ERLGYQ+G I DI+KHKWF GF+W+GLR
Sbjct: 584 ILK-GIDAVDFPRNITRNATALIKKLCRDNPTERLGYQKGEIRDIQKHKWFDGFNWEGLR 642

Query: 168 NQTLTPPIIP 177
           N+TLTPPIIP
Sbjct: 643 NRTLTPPIIP 652

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240304|ref|XP_973707.2| PREDICTED: similar to foraging CG10033-PA [Tribolium castaneum]

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 94/152 (61%), Gaps = 17/152 (11%)

Query: 41  DLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTY-NMIINVGID------------ 87
           +L +  +G  +++  G   +L SGR  +     P      +I+N G D            
Sbjct: 545 NLLLDNQGYVKLVDFGFAKKLHSGRKTWTFCGTPEYVAPEVILNKGHDISADYWSLGVLM 604

Query: 88  --NIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ 145
              +   PPF    DPM+TYN+I+  GID I FP+++TR A +LIK LC+++PAERLGYQ
Sbjct: 605 FELLTGTPPF-TGADPMKTYNIILK-GIDAIDFPRNITRNAMALIKKLCRDNPAERLGYQ 662

Query: 146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           +GGI +I+KHKWF GF+W+GL N+TLTPPI+P
Sbjct: 663 KGGISEIQKHKWFDGFNWEGLVNRTLTPPILP 694

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321476601|gb|EFX87561.1| hypothetical protein DAPPUDRAFT_207381 [Daphnia pulex]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 68/86 (79%), Gaps = 2/86 (2%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF    DPM+TYN+I+  GID+I FP+ V R AQ+LIK LC+E PAERLGYQRGGI DI
Sbjct: 537 PPF-TSPDPMKTYNIILK-GIDQIEFPRIVNRAAQALIKRLCREVPAERLGYQRGGIDDI 594

Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIPV 178
           KKH+WFQ FDWDGL N+TL  PI PV
Sbjct: 595 KKHRWFQVFDWDGLSNRTLAAPITPV 620

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012370|gb|EFA08818.1| hypothetical protein TcasGA2_TC006513 [Tribolium castaneum]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 94/152 (61%), Gaps = 17/152 (11%)

Query: 41  DLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTY-NMIINVGID------------ 87
           +L +  +G  +++  G   +L SGR  +     P      +I+N G D            
Sbjct: 353 NLLLDNQGYVKLVDFGFAKKLHSGRKTWTFCGTPEYVAPEVILNKGHDISADYWSLGVLM 412

Query: 88  --NIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ 145
              +   PPF    DPM+TYN+I+  GID I FP+++TR A +LIK LC+++PAERLGYQ
Sbjct: 413 FELLTGTPPF-TGADPMKTYNIILK-GIDAIDFPRNITRNAMALIKKLCRDNPAERLGYQ 470

Query: 146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           +GGI +I+KHKWF GF+W+GL N+TLTPPI+P
Sbjct: 471 KGGISEIQKHKWFDGFNWEGLVNRTLTPPILP 502

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723955|ref|XP_003400352.1| PREDICTED: cGMP-dependent protein kinase, isozyme 2 forms cD4/T1/T3A/T3B [Bombus terrestris]

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 93/153 (60%), Gaps = 17/153 (11%)

Query: 40  NDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTY-NMIINVGID----------- 87
            +L + ++G  +++  G   RL  GR  +     P      +I+N G D           
Sbjct: 539 ENLLLDSQGYVKLVDFGFAKRLDHGRKTWTFCGTPEYVAPEVILNKGHDISADYWSLGVL 598

Query: 88  ---NIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY 144
               +   PPF    DPM+TYN+I+  GID I FP+ +TR A +LIK LC+++PAERLGY
Sbjct: 599 MFELLTGTPPF-TGGDPMKTYNIILK-GIDAIEFPRSITRNATALIKKLCRDNPAERLGY 656

Query: 145 QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           Q+GGI +I+KHKWF GF+W+GLR++TL PPI+P
Sbjct: 657 QKGGISEIQKHKWFDGFNWEGLRSRTLEPPIMP 689

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422649|ref|XP_003493238.1| PREDICTED: cGMP-dependent protein kinase, isozyme 2 forms cD4/T1/T3A/T3B-like [Bombus impatiens]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 93/153 (60%), Gaps = 17/153 (11%)

Query: 40  NDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTY-NMIINVGID----------- 87
            +L + ++G  +++  G   RL  GR  +     P      +I+N G D           
Sbjct: 485 ENLLLDSQGYVKLVDFGFAKRLDHGRKTWTFCGTPEYVAPEVILNKGHDISADYWSLGVL 544

Query: 88  ---NIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY 144
               +   PPF    DPM+TYN+I+  GID I FP+ +TR A +LIK LC+++PAERLGY
Sbjct: 545 MFELLTGTPPF-TGGDPMKTYNIILK-GIDAIEFPRSITRNATALIKKLCRDNPAERLGY 602

Query: 145 QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           Q+GGI +I+KHKWF GF+W+GLR++TL PPI+P
Sbjct: 603 QKGGISEIQKHKWFDGFNWEGLRSRTLEPPIMP 635

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
FB|FBgn0000442	768	Pkg21D "cGMP-dependent protein	0.459	0.110	0.647	2.2e-41
FB|FBgn0000721	1088	for "foraging" [Drosophila mel	0.475	0.080	0.615	2.7e-38
UNIPROTKB|Q5SQU3	659	PRKG1 "cGMP-dependent protein	0.464	0.130	0.595	1.6e-35
MGI|MGI:108174	671	Prkg1 "protein kinase, cGMP-de	0.464	0.128	0.595	1.8e-35
UNIPROTKB|P00516	671	PRKG1 "cGMP-dependent protein	0.464	0.128	0.595	1.8e-35
UNIPROTKB|Q13976	671	PRKG1 "cGMP-dependent protein	0.464	0.128	0.595	1.8e-35
UNIPROTKB|F1NE85	685	F1NE85 "cGMP-dependent protein	0.464	0.125	0.595	2e-35
UNIPROTKB|F1MY76	686	PRKG1 "cGMP-dependent protein	0.464	0.125	0.595	2e-35
UNIPROTKB|O77676	671	PRKG1 "cGMP-dependent protein	0.464	0.128	0.595	2.9e-35
ZFIN|ZDB-GENE-040426-1308	667	prkg1a "protein kinase, cGMP-d	0.448	0.124	0.6	9.4e-35

FB|FBgn0000442 Pkg21D "cGMP-dependent protein kinase 21D" [Drosophila melanogaster (taxid:7227)]

 Score = 303 (111.7 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
 Identities = 57/88 (64%), Positives = 67/88 (76%)

Query:    93 PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
             PPF    DPMQTYN+I+  GID I FPKH++R A  LIK LC++ P+ERLGYQ GGI DI
Sbjct:   654 PPFSAP-DPMQTYNLILK-GIDMIAFPKHISRWAVQLIKRLCRDVPSERLGYQTGGIQDI 711

Query:   153 KKHKWFQGFDWDGLRNQTLTPPII-PVA 179
             KKHKWF GFDWDGL +Q L PP + P+A
Sbjct:   712 KKHKWFLGFDWDGLASQLLIPPFVRPIA 739

GO:0004692 "cGMP-dependent protein kinase activity" evidence=ISS;NAS;IDA

GO:0006468 "protein phosphorylation" evidence=NAS;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0030551 "cyclic nucleotide binding" evidence=NAS

GO:0005524 "ATP binding" evidence=IEA

FB|FBgn0000721 for "foraging" [Drosophila melanogaster (taxid:7227)]

 Score = 292 (107.8 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
 Identities = 56/91 (61%), Positives = 72/91 (79%)

Query:    93 PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
             PPF   +DPM+TYN+I+  GID I FP+++TR A +LIK LC+++PAERLGYQRGGI +I
Sbjct:   973 PPF-TGSDPMRTYNIILK-GIDAIEFPRNITRNASNLIKKLCRDNPAERLGYQRGGISEI 1030

Query:   153 KKHKWFQGFDWDGLRNQTLTPPIIP-VASIL 182
             +KHKWF GF W GL+N TL PPI P V S++
Sbjct:  1031 QKHKWFDGFYWWGLQNCTLEPPIKPAVKSVV 1061

GO:0004690 "cyclic nucleotide-dependent protein kinase activity" evidence=ISS

GO:0030536 "larval feeding behavior" evidence=IMP;TAS

GO:0004692 "cGMP-dependent protein kinase activity" evidence=NAS;IDA

GO:0006468 "protein phosphorylation" evidence=NAS;IDA

GO:0008345 "larval locomotory behavior" evidence=IMP

GO:0046959 "habituation" evidence=IMP

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0007631 "feeding behavior" evidence=TAS

GO:0008016 "regulation of heart contraction" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=IDA

GO:0007616 "long-term memory" evidence=IMP

GO:0007614 "short-term memory" evidence=IMP

GO:0032095 "regulation of response to food" evidence=IMP

UNIPROTKB|Q5SQU3 PRKG1 "cGMP-dependent protein kinase 1" [Homo sapiens (taxid:9606)]

 Score = 280 (103.6 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
 Identities = 53/89 (59%), Positives = 69/89 (77%)

Query:    93 PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
             PPF    DPM+TYN+I+  GID I FPK + + A +LIK LC+++P+ERLG  + G+ DI
Sbjct:   544 PPFSGP-DPMKTYNIILR-GIDMIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDI 601

Query:   153 KKHKWFQGFDWDGLRNQTLTPPIIP-VAS 180
             +KHKWF+GF+W+GLR  TLTPPIIP VAS
Sbjct:   602 QKHKWFEGFNWEGLRKGTLTPPIIPSVAS 630

GO:0004692 "cGMP-dependent protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:108174 Prkg1 "protein kinase, cGMP-dependent, type I" [Mus musculus (taxid:10090)]

 Score = 280 (103.6 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
 Identities = 53/89 (59%), Positives = 69/89 (77%)

Query:    93 PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
             PPF    DPM+TYN+I+  GID I FPK + + A +LIK LC+++P+ERLG  + G+ DI
Sbjct:   556 PPFSGP-DPMKTYNIILR-GIDMIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDI 613

Query:   153 KKHKWFQGFDWDGLRNQTLTPPIIP-VAS 180
             +KHKWF+GF+W+GLR  TLTPPIIP VAS
Sbjct:   614 QKHKWFEGFNWEGLRKGTLTPPIIPSVAS 642

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001764 "neuron migration" evidence=IMP

GO:0003824 "catalytic activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004692 "cGMP-dependent protein kinase activity" evidence=ISO;IDA

GO:0005246 "calcium channel regulator activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA;IMP

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0007165 "signal transduction" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016358 "dendrite development" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030553 "cGMP binding" evidence=IDA

GO:0030900 "forebrain development" evidence=IMP

GO:0043087 "regulation of GTPase activity" evidence=ISO

GO:0090331 "negative regulation of platelet aggregation" evidence=ISO

UNIPROTKB|P00516 PRKG1 "cGMP-dependent protein kinase 1" [Bos taurus (taxid:9913)]

 Score = 280 (103.6 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
 Identities = 53/89 (59%), Positives = 69/89 (77%)

Query:    93 PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
             PPF    DPM+TYN+I+  GID I FPK + + A +LIK LC+++P+ERLG  + G+ DI
Sbjct:   556 PPFSGP-DPMKTYNIILR-GIDMIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDI 613

Query:   153 KKHKWFQGFDWDGLRNQTLTPPIIP-VAS 180
             +KHKWF+GF+W+GLR  TLTPPIIP VAS
Sbjct:   614 QKHKWFEGFNWEGLRKGTLTPPIIPSVAS 642

GO:0005829 "cytosol" evidence=TAS

GO:0043087 "regulation of GTPase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005246 "calcium channel regulator activity" evidence=ISS

GO:0004692 "cGMP-dependent protein kinase activity" evidence=ISS

GO:0090331 "negative regulation of platelet aggregation" evidence=ISS

GO:0030553 "cGMP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q13976 PRKG1 "cGMP-dependent protein kinase 1" [Homo sapiens (taxid:9606)]

 Score = 280 (103.6 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
 Identities = 53/89 (59%), Positives = 69/89 (77%)

Query:    93 PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
             PPF    DPM+TYN+I+  GID I FPK + + A +LIK LC+++P+ERLG  + G+ DI
Sbjct:   556 PPFSGP-DPMKTYNIILR-GIDMIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDI 613

Query:   153 KKHKWFQGFDWDGLRNQTLTPPIIP-VAS 180
             +KHKWF+GF+W+GLR  TLTPPIIP VAS
Sbjct:   614 QKHKWFEGFNWEGLRKGTLTPPIIPSVAS 642

GO:0005524 "ATP binding" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0030553 "cGMP binding" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0004692 "cGMP-dependent protein kinase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005246 "calcium channel regulator activity" evidence=IDA

GO:0090331 "negative regulation of platelet aggregation" evidence=IMP

GO:0043087 "regulation of GTPase activity" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

UNIPROTKB|F1NE85 F1NE85 "cGMP-dependent protein kinase" [Gallus gallus (taxid:9031)]

 Score = 280 (103.6 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
 Identities = 53/89 (59%), Positives = 69/89 (77%)

Query:    93 PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
             PPF    DPM+TYN+I+  GID I FPK + + A +LIK LC+++P+ERLG  + G+ DI
Sbjct:   570 PPFSGP-DPMKTYNIILR-GIDMIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDI 627

Query:   153 KKHKWFQGFDWDGLRNQTLTPPIIP-VAS 180
             +KHKWF+GF+W+GLR  TLTPPIIP VAS
Sbjct:   628 QKHKWFEGFNWEGLRKGTLTPPIIPSVAS 656

GO:0005524 "ATP binding" evidence=IEA

GO:0004692 "cGMP-dependent protein kinase activity" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0005246 "calcium channel regulator activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0030553 "cGMP binding" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0043087 "regulation of GTPase activity" evidence=IEA

GO:0090331 "negative regulation of platelet aggregation" evidence=IEA

UNIPROTKB|F1MY76 PRKG1 "cGMP-dependent protein kinase" [Bos taurus (taxid:9913)]

 Score = 280 (103.6 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
 Identities = 53/89 (59%), Positives = 69/89 (77%)

Query:    93 PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
             PPF    DPM+TYN+I+  GID I FPK + + A +LIK LC+++P+ERLG  + G+ DI
Sbjct:   571 PPFSGP-DPMKTYNIILR-GIDMIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDI 628

Query:   153 KKHKWFQGFDWDGLRNQTLTPPIIP-VAS 180
             +KHKWF+GF+W+GLR  TLTPPIIP VAS
Sbjct:   629 QKHKWFEGFNWEGLRKGTLTPPIIPSVAS 657

GO:0090331 "negative regulation of platelet aggregation" evidence=IEA

GO:0043087 "regulation of GTPase activity" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030553 "cGMP binding" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005246 "calcium channel regulator activity" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0004692 "cGMP-dependent protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|O77676 PRKG1 "cGMP-dependent protein kinase 1" [Oryctolagus cuniculus (taxid:9986)]

 Score = 280 (103.6 bits), Expect = 2.9e-35, Sum P(2) = 2.9e-35
 Identities = 53/89 (59%), Positives = 69/89 (77%)

Query:    93 PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
             PPF    DPM+TYN+I+  GID I FPK + + A +LIK LC+++P+ERLG  + G+ DI
Sbjct:   556 PPFSGP-DPMKTYNIILR-GIDMIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDI 613

Query:   153 KKHKWFQGFDWDGLRNQTLTPPIIP-VAS 180
             +KHKWF+GF+W+GLR  TLTPPIIP VAS
Sbjct:   614 QKHKWFEGFNWEGLRKGTLTPPIIPSVAS 642

GO:0004692 "cGMP-dependent protein kinase activity" evidence=ISS

GO:0005246 "calcium channel regulator activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043087 "regulation of GTPase activity" evidence=ISS

GO:0090331 "negative regulation of platelet aggregation" evidence=ISS

ZFIN|ZDB-GENE-040426-1308 prkg1a "protein kinase, cGMP-dependent, type Ia" [Danio rerio (taxid:7955)]

 Score = 280 (103.6 bits), Expect = 9.4e-35, Sum P(2) = 9.4e-35
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:    93 PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
             PPF    DPM+TYN+I+  GID I FPK +T+ A +LIK LC+++P+ERLG  + G+ DI
Sbjct:   552 PPFSGP-DPMKTYNIILR-GIDMIEFPKKITKNAANLIKKLCRDTPSERLGNLKNGVKDI 609

Query:   153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
             +KHKWF+GF+WDGLR  TL PPIIP
Sbjct:   610 QKHKWFEGFNWDGLRKGTLMPPIIP 634

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004692 "cGMP-dependent protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0030553 "cGMP binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P00516	KGP1_BOVIN	2, ., 7, ., 1, 1, ., 1, 2	0.5955	0.4648	0.1281	yes	N/A
Q03042	KGP1_DROME	2, ., 7, ., 1, 1, ., 1, 2	0.6477	0.4594	0.1106	yes	N/A
O77676	KGP1_RABIT	2, ., 7, ., 1, 1, ., 1, 2	0.5955	0.4648	0.1281	yes	N/A
P0C605	KGP1_MOUSE	2, ., 7, ., 1, 1, ., 1, 2	0.5955	0.4648	0.1281	yes	N/A
Q13976	KGP1_HUMAN	2, ., 7, ., 1, 1, ., 1, 2	0.5955	0.4648	0.1281	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	185
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	5e-27
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	2e-23
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	2e-15
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	3e-13
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	5e-13
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	9e-13
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	1e-12
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-12
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	4e-12
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	7e-12
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	3e-11
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	4e-11
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	7e-11
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	3e-10
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	3e-10
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	2e-09
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	4e-09
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	5e-09
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	8e-09
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	1e-08
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	2e-08
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	2e-08
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	2e-08
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	2e-08
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	3e-08
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	3e-08
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	3e-08
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	2e-07
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	2e-07
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	2e-07
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	2e-07
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	2e-07
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	3e-07
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	3e-07
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	6e-07
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	1e-06
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	1e-06
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	2e-06
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	2e-06
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	2e-06
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	2e-06
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	2e-06
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	2e-06
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	3e-06
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	3e-06
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	3e-06
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	4e-06
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	5e-06
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	5e-06
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	5e-06
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	5e-06
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	7e-06
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	2e-05
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	4e-05
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	4e-05
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	7e-05
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	7e-05
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	2e-04
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	2e-04
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	4e-04
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	6e-04
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	0.001
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	0.002
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	0.002
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	0.002

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score =  102 bits (256), Expect = 5e-27
 Identities = 40/76 (52%), Positives = 51/76 (67%), Gaps = 2/76 (2%)

Query: 91  SRPPFCVMN-DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI 149
            RPPF   + DPM+ YN  I  G  K+ FP ++ + A+ LIK L + +P ERLG  +GGI
Sbjct: 188 GRPPFGEDDEDPMEIYN-DILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGI 246

Query: 150 VDIKKHKWFQGFDWDG 165
            DIKKHKWF GFDW+G
Sbjct: 247 KDIKKHKWFNGFDWEG 262

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 93.4 bits (233), Expect = 2e-23
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   ++P+Q Y  I+     K+ FP   +  A+ LI+ L +    +RLG  + G+ DI
Sbjct: 196 PPF-FDDNPIQIYEKILE---GKVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDI 251

Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K H WF G DW  L  + +  P IP
Sbjct: 252 KNHPWFAGIDWIALLQRKIEAPFIP 276

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   N P   Y  I+     K+ FP+H+   A+ LIK L       RLG  + G  D+
Sbjct: 196 PPFFDDN-PFGIYEKILA---GKLEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDV 251

Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K H+WF+  DWD +  + L PPI+P
Sbjct: 252 KNHRWFKSVDWDDVPQRKLKPPIVP 276

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 10/93 (10%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAERLGYQRGGIV 150
           PPFC  ++P +TY  IIN   + + FP    ++  A+ LIK LC E    RLG    G+ 
Sbjct: 237 PPFC-SDNPQETYRKIINWK-ETLQFPDEVPLSPEAKDLIKRLCCE-AERRLG--NNGVN 291

Query: 151 DIKKHKWFQGFDWDGLRNQTLTPPIIP-VASIL 182
           +IK H +F+G DW+ +R +    PIIP + SI 
Sbjct: 292 EIKSHPFFKGVDWEHIRER--PAPIIPELKSIT 322

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 9/92 (9%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKH--VTRTAQSLIKALCKESPAERLGYQR 146
           ++   PF   N      N++      ++ FP    V+ +A+ LI+ L  + P++RLG +R
Sbjct: 226 LYGTTPFKGSNRDETFSNILKK----EVTFPGSPPVSSSARDLIRKLLVKDPSKRLGSKR 281

Query: 147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPV 178
           G   +IK+H +F+G +W  +R+   TPPIIP 
Sbjct: 282 GA-AEIKQHPFFRGVNWALIRHT--TPPIIPR 310

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 64.8 bits (158), Expect = 9e-13
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P + Y  I+     ++ FP      A+ L+K L +    +RLG  +GG+ D+
Sbjct: 213 PPF-FDDTPFRIYEKIL---AGRLKFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADV 268

Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIPV 178
           K H +F G +WD L  +    P IPV
Sbjct: 269 KNHPYFHGANWDKLYARYYPAP-IPV 293

Length = 329

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 64.4 bits (157), Expect = 1e-12
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 100 DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 159
           D  +T  MI+     K+  P+ ++  AQSL++AL K +PA RLG    G+ +IK+H +F 
Sbjct: 202 DRKETMTMILKA---KLGMPQFLSPEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFS 258

Query: 160 GFDWDGLRNQTLTPPIIPVAS 180
             DW+ L  + + PP  P   
Sbjct: 259 TIDWNKLYRREIKPPFKPAVG 279

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 62.9 bits (154), Expect = 2e-12
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           +PPF    D  + Y  I+    D + FP+ ++  A+ LI  L ++ P +RLG   GG  +
Sbjct: 190 KPPFYA-EDRKEIYEKILK---DPLRFPEFLSPEARDLISGLLQKDPTKRLGS--GGAEE 243

Query: 152 IKKHKWF 158
           IK H +F
Sbjct: 244 IKAHPFF 250

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGID-KIPFPKHVTRTAQSLIKALCKESPAERLGYQRG 147
           ++  PPF   +   +TYN IIN     + P    V+  A  LI  L  + P +RLG    
Sbjct: 224 LYGFPPFYS-DTLQETYNKIINWKESLRFPPDPPVSPEAIDLICRLLCD-PEDRLG---- 277

Query: 148 GIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS 180
              +IK H +F+G DW+ LR     PP +P  S
Sbjct: 278 SFEEIKSHPFFKGIDWENLRET--KPPFVPELS 308

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 62.1 bits (151), Expect = 7e-12
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 115 KIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPP 174
           K PFPK ++  A+  I+ L ++ P +RLG    G  +IK H +FQG DWD L  + +  P
Sbjct: 228 KPPFPKTMSAEARDFIQKLLEKDPKKRLGA--NGADEIKNHPFFQGIDWDDLAAKRIPAP 285

Query: 175 IIP 177
             P
Sbjct: 286 FKP 288

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 60.2 bits (146), Expect = 3e-11
 Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 11/79 (13%)

Query: 103 QTYNMIINVGIDKIPFPKHVT---RTAQSLIKAL-CKESPAERLGYQRGGIVDIKKHKWF 158
           +TY  I+N   +   FP  VT     A+ LI+ L C  SP  RLG  R G+ D K H +F
Sbjct: 215 ETYGKIMNHK-EHFQFPPDVTDVSEEAKDLIRRLIC--SPETRLG--RNGLQDFKDHPFF 269

Query: 159 QGFDWDGLRNQTLTPPIIP 177
           +G DWD +RN   T P +P
Sbjct: 270 EGIDWDNIRN--STAPYVP 286

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           + PF   ++  + +  I+    D++ +P+ +++ A+S++K+   ++P +RLG    G  D
Sbjct: 193 QSPFEGDDED-ELFQSILE---DEVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQD 248

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD 184
           IK H +F+  DWD L  + + PP  P      D
Sbjct: 249 IKGHPFFREIDWDKLERKEIKPPFKPKIKGRFD 281

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 99  NDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF 158
           +D  + ++ I+N   D++ +P+ ++R A S+++ L + +P  RLG       D+KK  +F
Sbjct: 204 DDEEEVFDSIVN---DEVRYPRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKKQPFF 260

Query: 159 QGFDWDGLRNQTLTPPIIP 177
           +  +WD L  + + PP +P
Sbjct: 261 RDINWDDLLARKIKPPFVP 279

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 57.7 bits (139), Expect = 3e-10
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 92  RPPFCVMND--PMQTYNMIINVGIDK-IPFPKHVTRTAQSLIKALCKESPAERLGYQ-RG 147
           R PF ++ D   M T + +  V ++K I  P+ ++  A  ++K    + P ERLG Q + 
Sbjct: 193 RSPFDIITDNPDMNTEDYLFQVILEKPIRIPRFLSVKASHVLKGFLNKDPKERLGCQPQT 252

Query: 148 GIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           G  DIK H +F+  DWD L  + +TPP  P
Sbjct: 253 GFSDIKSHTFFRSIDWDLLEKKQVTPPFKP 282

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAERLGYQRGGIV 150
           PPF     P + +  I+N    KI +P+   V+  A  LI  L    P +RLG     I 
Sbjct: 199 PPF-HGETPEEIFQNILN---GKIEWPEDVEVSDEAIDLISKLLVPDPEKRLGA--KSIE 252

Query: 151 DIKKHKWFQGFDW 163
           +IK H +F+G DW
Sbjct: 253 EIKNHPFFKGIDW 265

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 9/87 (10%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAERLGYQRGGIV 150
           PPFC  N   +TY  IIN   + + FP   H++  A+ LI+ L   +   RLG  RGG  
Sbjct: 246 PPFCSEN-SHETYRKIINWR-ETLYFPDDIHLSVEAEDLIRRLIT-NAENRLG--RGGAH 300

Query: 151 DIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           +IK H +F+G DWD +R   +  P IP
Sbjct: 301 EIKSHPFFRGVDWDTIRQ--IRAPFIP 325

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   N   +T + I+     K+  P ++T  A+ L+K L K +P+ RLG   G   ++
Sbjct: 198 PPFTAENRK-KTIDKILK---GKLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEV 253

Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           + H +F+  +WD L  + + PP  P
Sbjct: 254 QSHPFFRHVNWDDLLARKVEPPFKP 278

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 54.2 bits (130), Expect = 5e-09
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 103 QTYNMIINVGIDKIPFPKHV-TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 161
            T  M  N+   K+ FPK+V +   +  +K L   +P  RLG  R   V++K+H +F   
Sbjct: 201 DTQQMYRNIAFGKVRFPKNVLSDEGRQFVKGLLNRNPQHRLGAHRDA-VELKEHPFFADI 259

Query: 162 DWDGLRNQTLTPPIIP 177
           DWD L  + +TPP  P
Sbjct: 260 DWDLLSKKQITPPFKP 275

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 53.3 bits (128), Expect = 8e-09
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           ++  PPF    D  + Y+ I+N     +    +++ +A+ L++ L ++   +RLG  +  
Sbjct: 190 LYGLPPF-YSRDTAEMYDNILN---KPLRLKPNISVSARHLLEGLLQKDRTKRLG-AKDD 244

Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
            ++IK H +F   +WD L N+ +TPP  P
Sbjct: 245 FLEIKNHVFFSSINWDDLVNKKITPPFNP 273

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 53.1 bits (127), Expect = 1e-08
 Identities = 23/62 (37%), Positives = 38/62 (61%)

Query: 116 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 175
           + +PK +++ A S+ K L  + P++RLG    G  DI++H +F+  DWD L N+ + PP 
Sbjct: 218 VSYPKSLSKEAVSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRIDWDKLENREIQPPF 277

Query: 176 IP 177
            P
Sbjct: 278 KP 279

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 116 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 175
           + +PK +++ A S+ K L  + PA+RLG    G  DI++H +F+  DW+ L  + + PP 
Sbjct: 218 VSYPKSLSKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRRIDWEKLERREIQPPF 277

Query: 176 IP 177
            P
Sbjct: 278 KP 279

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 117 PFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPII 176
           PFP  +   AQ L+  L ++ P +RLG    G  +IK+H +F+G DW+ L  + + PP  
Sbjct: 229 PFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGLDWEALALRKVNPPFR 288

Query: 177 PVASILRDE 185
           P    +R+E
Sbjct: 289 PS---IRNE 294

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 22/65 (33%), Positives = 37/65 (56%)

Query: 116 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 175
           + +PK +++ A ++ K L  + P +RLG    G  DIK+H +F+  DW+ L  + + PP 
Sbjct: 218 VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEVQPPY 277

Query: 176 IPVAS 180
            P A 
Sbjct: 278 KPKAC 282

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 92  RPPFCVM----NDPMQTYNMIINVGIDK-IPFPKHVTRTAQSLIKALCKESPAERLGYQR 146
           R PF ++    N    T + +  V ++K I  P+ ++  A S++K    + P ERLG   
Sbjct: 193 RSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIPRSLSVKASSVLKGFLNKDPKERLGCHP 252

Query: 147 -GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
             G  DIK H +F+  DWD L  + + PP  P
Sbjct: 253 QTGFRDIKSHPFFRNIDWDLLEQKQVLPPYKP 284

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGID-KIPFPKHVTRTAQSLIKALCKESPAERLGYQRG 147
           +  +PPF + + P +T   +IN      IP    ++R A  LI  LC     +RLG  + 
Sbjct: 238 LVGQPPF-LADTPAETQLKVINWETTLHIPSQAKLSREASDLILRLCC-GAEDRLG--KN 293

Query: 148 GIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS 180
           G  +IK H +F+G D+  L  +    P IP  +
Sbjct: 294 GADEIKAHPFFKGIDFASLIRR-QKAPYIPKIT 325

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 51.6 bits (123), Expect = 3e-08
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 15/134 (11%)

Query: 53  IKDGKILRLLSGRPPFC---VMNDPMQTYNMIIN------VGIDNIFSRPPFCVMNDPMQ 103
           IKDG  ++   G P +    V+ D    Y   ++      V  + +  R PF    D  +
Sbjct: 147 IKDGATMKTFCGTPEYLAPEVLED--NDYGRAVDWWGLGVVMYEMMCGRLPF-YNQDHEK 203

Query: 104 TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
            + +I+   +++I FP+ ++  A+SL+  L K+ P +RLG       +I +HK+F G  W
Sbjct: 204 LFELIL---MEEIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGIVW 260

Query: 164 DGLRNQTLTPPIIP 177
             +  + L PP  P
Sbjct: 261 QDVYEKKLVPPFKP 274

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 51.5 bits (123), Expect = 3e-08
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   N   + Y  I+    + + FP    R A+ L+  L    P  RLGY   G  +I
Sbjct: 191 PPFYDENVN-EMYRKILQ---EPLRFPDGFDRDAKDLLIGLLSRDPTRRLGY--NGAQEI 244

Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIPVAS 180
           K H +F    W  L  + + PP  P  S
Sbjct: 245 KNHPFFSQLSWKKLLMKGIQPPFKPAVS 272

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 15/134 (11%)

Query: 53  IKDGKILRLLSGRPPFC---VMNDPMQTYNMIIN------VGIDNIFSRPPFCVMNDPMQ 103
           I DG  ++   G P +    V+ D    Y   ++      V  + +  R PF    D  +
Sbjct: 146 ISDGATMKTFCGTPEYLAPEVLED--NDYGRAVDWWGLGVVMYEMMCGRLPF-YNQDHER 202

Query: 104 TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
            + +I+   +++I FP+ ++  A+SL+  L K+ P +RLG       ++ +H++F   +W
Sbjct: 203 LFELIL---MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 259

Query: 164 DGLRNQTLTPPIIP 177
             +  + L PP  P
Sbjct: 260 QDVVQKKLLPPFKP 273

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 92  RPPFCVM----NDPMQTYNMIINVGIDK-IPFPKHVTRTAQSLIKALCKESPAERLG-YQ 145
           R PF ++    N    T + +  V ++K I  P+ ++  A S++K+   + P ERLG + 
Sbjct: 193 RSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHP 252

Query: 146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           + G  DI+ H +F+  DWD +  + + PP  P
Sbjct: 253 QTGFADIQGHPFFRNVDWDLMEQKQVVPPFKP 284

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query: 114 DKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTP 173
             + +P   +  A+ L +AL ++ P +RLG + G   ++++H  F+  +W  L    L P
Sbjct: 213 MAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVREHPLFKDLNWRRLEAGMLEP 272

Query: 174 PIIP 177
           P IP
Sbjct: 273 PFIP 276

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 12/96 (12%)

Query: 84  VGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAER 141
           +  + I+ R PF       +TYN I+N     + FP+   V+     LI++L      ER
Sbjct: 198 IAYEMIYGRSPFHEGTS-AKTYNNIMNFQ-RFLKFPEDPKVSSDFLDLIQSLLC-GQKER 254

Query: 142 LGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           LGY+      +  H +F   DW+ +RN    PP +P
Sbjct: 255 LGYEG-----LCCHPFFSKIDWNNIRNS--LPPFVP 283

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 11/83 (13%)

Query: 102 MQTYNMIINVGIDKIPFPKHVT---RTAQSLIKAL-CKESPAERLGYQRGGIVDIKKHKW 157
           ++TY  I+N   ++  FP H+T     A+ LI+ L C  S   RLG  + GI D KKH +
Sbjct: 214 VETYGKIMNHE-ERFQFPSHITDVSEEAKDLIQRLIC--SRERRLG--QNGIEDFKKHAF 268

Query: 158 FQGFDWDGLRNQTLTPPIIPVAS 180
           F+G DW+ +RN  L  P IP  S
Sbjct: 269 FEGIDWENIRN--LEAPYIPDVS 289

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 2/44 (4%)

Query: 126 AQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQ 169
           AQ LI  L +++P ERLG   GG  ++K+H++F G DW+GL  Q
Sbjct: 246 AQDLISRLLRQNPLERLG--TGGAFEVKQHRFFLGLDWNGLLRQ 287

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   N+P+  Y  I+  GI  I FPK +    + L+K L      +R G  + G  ++
Sbjct: 226 PPF-YANEPLLIYQKILE-GI--IYFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNV 281

Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K+H WF   DW  L ++ +  P  P
Sbjct: 282 KEHPWFGNIDWVSLLHKNVEVPYKP 306

Length = 340

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 48.1 bits (114), Expect = 6e-07
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           ++  PPF   N   + Y+ I+N  +   P   ++T +A+ L++ L ++   +RLG  +  
Sbjct: 190 LYGLPPFYSRNTA-EMYDNILNKPLQLKP---NITNSARHLLEGLLQKDRTKRLGA-KDD 244

Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS 180
            ++IK H +F   +WD L N+ +TPP  P  S
Sbjct: 245 FMEIKNHIFFSPINWDDLINKKITPPFNPNVS 276

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 113 IDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLT 172
           +++I FP+ ++  A+SL+  L K+ P +RLG       +I +H++F   +W  +  + L 
Sbjct: 209 MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASINWQDVVQKKLE 268

Query: 173 PPIIP 177
           PP  P
Sbjct: 269 PPFKP 273

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 114 DKIPFPKHVTRTAQSLIKALCKESPAERLG-YQRGGIVDIKKHKWFQGFDWDGLRNQTLT 172
           D++ +P  +++ A  ++KA   ++P  RLG    GG   I +H +F+  DW+ L  + + 
Sbjct: 211 DEVVYPTWLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKELDWEKLNRRQIE 270

Query: 173 PPIIP 177
           PP  P
Sbjct: 271 PPFRP 275

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 117 PFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPII 176
           P+P+ ++  A+ +I+ L  + P +RLG       +IKKH +FQ  +WD L  + +  P  
Sbjct: 230 PYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKINWDDLAAKKVPAPFK 289

Query: 177 P 177
           P
Sbjct: 290 P 290

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           +  A+S+ + L  + P  RLG +  G  ++K H +F+  ++  L    L PP  P
Sbjct: 229 SEAARSICRQLLTKDPGFRLGCRGEGAEEVKAHPFFRTANFKRLEAGMLEPPFCP 283

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHV--TRTAQSLIKALCKESPAERLGYQRGGIV 150
           PPFC    P +TY  ++N   + + FP  V  +  A+ LI   C +S   R+G    G+ 
Sbjct: 234 PPFC-SETPQETYRKVMNWK-ETLVFPPEVPISEKAKDLILRFCTDS-ENRIG--SNGVE 288

Query: 151 DIKKHKWFQGFDWDGLRNQTLTPPI 175
           +IK H +F+G DW  +R +    PI
Sbjct: 289 EIKSHPFFEGVDWGHIRERPAAIPI 313

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 5  FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-----KIL 59
              LD  +++E+ +++ +  + A   +I +G+  + L++   G  +V K       +I+
Sbjct: 1  LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60

Query: 60 RLL 62
            L
Sbjct: 61 GFL 63

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           +  +PPF   N+   T+  I+ +      FP +    A+ LI+ L    P +RLG    G
Sbjct: 216 LTGKPPFRGSNEY-LTFQKILKLEYS---FPPNFPPDAKDLIEKLLVLDPQDRLGVNE-G 270

Query: 149 IVDIKKHKWF 158
             ++K H +F
Sbjct: 271 YDELKAHPFF 280

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           R PF    D  + + +I+   ++ I FP+ ++  A+SL+  L  + P +RLG       +
Sbjct: 192 RLPF-YNQDHEKLFELIL---MEDIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKE 247

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
           I +H +F G +W  + ++ L PP  P
Sbjct: 248 IMRHSFFTGVNWQDVYDKKLVPPFKP 273

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 6/95 (6%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG--YQRGGI 149
           +PPF   N+    +  I++   D + +P  +++ A S++KA   ++P +RLG    +GG 
Sbjct: 193 QPPFEADNED-DLFESILH---DDVLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGE 248

Query: 150 VDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD 184
             IK+H +F+  DW  L  + + PP  P     RD
Sbjct: 249 DAIKQHPFFKEIDWVLLEQRKIKPPFKPKIKTKRD 283

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 11/83 (13%)

Query: 102 MQTYNMIINVGIDKIPFPKHVT---RTAQSLIKAL-CKESPAERLGYQRGGIVDIKKHKW 157
           ++TY  I+N   ++  FP  VT     A+ LI+ L C  S   RLG  + GI D K+H +
Sbjct: 214 VETYGKIMNHK-ERFQFPAQVTDVSEDAKDLIRRLIC--SREHRLG--QNGIEDFKQHPF 268

Query: 158 FQGFDWDGLRNQTLTPPIIPVAS 180
           F G DWD +RN     P IP  S
Sbjct: 269 FTGIDWDNIRN--CEAPYIPEVS 289

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           +PPF   +  ++ +  I        P    ++  A+ LI+ L  + P +RL        +
Sbjct: 193 KPPFPGDDQLLELFKKIGKPKPPFPPPEWDISPEAKDLIRKLLVKDPEKRL-----TAEE 247

Query: 152 IKKHKWF 158
             +H +F
Sbjct: 248 ALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           FP+ +++ A+  +  L +  P +RLG   G   DI++H +F+G DW+ L  + + PP  P
Sbjct: 215 FPRWISKEAKDCLSKLFERDPTKRLG-VDG---DIRQHPFFRGIDWERLEKREIPPPFKP 270

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 116 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 175
           +  P   +   +SL++ L +     RLG    G  ++K+H +F+  DW  +  Q   PP+
Sbjct: 216 VELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSLDWQMVFLQKYPPPL 275

Query: 176 IP 177
           IP
Sbjct: 276 IP 277

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 119 PKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF 158
           P+ V+  A+SL++ L + +P ERLG    G+ DIK H +F
Sbjct: 198 PEWVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF 237

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 18/90 (20%)

Query: 93  PPFCVMND--PMQTYNMIINVGIDKIPFP---KHVTRTAQSLIKALCKESPAERLGYQRG 147
           PPF   ND  P Q +  I+N     IP+P   + ++  AQ+ I+ L    P +R      
Sbjct: 578 PPF---NDETPQQVFQNILN---RDIPWPEGEEKLSVNAQNAIEILLTMDPTKR-----A 626

Query: 148 GIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           G+ ++K+H  F G DW+ L+NQ  T P IP
Sbjct: 627 GLKELKQHPLFHGVDWENLQNQ--TMPFIP 654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 114 DKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTP 173
           D + +P   +  ++S  +AL  + P +RLG++ G    ++ H  F+  +W  L    L P
Sbjct: 216 DSVTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDLNWRQLEAGMLPP 275

Query: 174 PIIP 177
           P +P
Sbjct: 276 PFVP 279

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 116 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 175
           +  P   +   +SL++ L +   ++RLG    G  ++K+H +F+G DW  +  Q   PP+
Sbjct: 216 VELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGIDWQQVYLQKYPPPL 275

Query: 176 IP 177
           IP
Sbjct: 276 IP 277

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 126 AQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           A+SL K L  + P ERLG Q GG  ++K+H  F+  ++  L    L PP  P
Sbjct: 232 ARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQINFKRLEAGMLEPPFKP 283

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHV--TRTAQSLIKALCKESPAERLGYQRGGIV 150
           PPFC    P +TY  ++N   + + FP  V  +  A+ LI   C E    R+G    G+ 
Sbjct: 234 PPFC-SETPQETYKKVMNWK-ETLIFPPEVPISEKAKDLILRFCCEW-EHRIGAP--GVE 288

Query: 151 DIKKHKWFQGFDWDGLRNQTLTPPIIPV 178
           +IK + +F+G DW+ +R +   P  IP+
Sbjct: 289 EIKTNPFFEGVDWEHIRER---PAAIPI 313

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 5  FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKD-----GKIL 59
            KNLD  +++E+ +++    Y A   +I +G+ G+  ++   GE +V K       +I+
Sbjct: 1  LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVSGEVEVYKVLEDGEEQIV 60

Query: 60 RLLS 63
            L 
Sbjct: 61 GTLG 64

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           ++  PPF    D  Q Y+ I++     +  P   T  A  L+  L  +    RLG  +  
Sbjct: 190 LYGLPPF-YSRDVSQMYDNILH---KPLQLPGGKTVAACDLLVGLLHKDQRRRLG-AKAD 244

Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
            ++IK H +F   +WD L ++ +TPP  P
Sbjct: 245 FLEIKNHVFFSPINWDDLYHKRITPPYNP 273

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 110 NVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQ 169
           ++ +D   +P+ +TR A+ ++  L    P  RLG  +G   DI++H +F+  DW  L  +
Sbjct: 207 SIRMDNPCYPRWLTREAKDILVKLFVREPERRLGV-KG---DIRQHPFFREIDWSALEER 262

Query: 170 TLTPPIIP 177
            + PP  P
Sbjct: 263 EIEPPFKP 270

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           ++  PPF    D  + Y+ I++  +   P     + TA S+++ L ++    RLG  +  
Sbjct: 190 LYGLPPF-YCRDVAEMYDNILHKPLVLRP---GASLTAWSILEELLEKDRQRRLGA-KED 244

Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
            ++I++H +F+   W  L  + + PP  P
Sbjct: 245 FLEIQEHPFFESLSWTDLEQKKIPPPFNP 273

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           +  A+S+ K L  + P +RLG Q  G  ++K+H +F+  ++  L    L PP +P
Sbjct: 229 SEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNMNFKRLEAGMLDPPFVP 283

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 114 DKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTP 173
           D+  + +  +  A+S+ + L  ++P ERLG +  G   +K+H  F+  ++  L    L P
Sbjct: 220 DQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNINFKRLEANMLEP 279

Query: 174 PIIP 177
           P  P
Sbjct: 280 PFCP 283

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHV----TRTAQSLIKALCKESPAERLGY 144
           +F  PPF     P   ++ I++    +I +P+ V    +  A  LI  L    PA+RLG 
Sbjct: 187 LFGYPPFHA-ETPDAVFDNILS---RRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGA 242

Query: 145 QRGGIVDIKKHKWFQGFDWD 164
              G  +IK H +F+  +WD
Sbjct: 243 N--GYQEIKSHPFFKSINWD 260

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 110 NVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQ 169
           ++ +D   +P+ +T+ ++ +++ L +  P  RLG     + +I+ H +F+  +W  L  +
Sbjct: 207 SIRVDTPHYPRWITKESKDILEKLFERDPTRRLGV----VGNIRGHPFFKTINWTALEKR 262

Query: 170 TLTPPIIPVASILRD 184
            L PP  P      D
Sbjct: 263 ELDPPFKPKVKSPSD 277

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 126 AQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           A  LI       P+ R G     + DIK H +F+  DW+ LR   L PP +P
Sbjct: 233 AWDLITK-LINDPSRRFG----SLEDIKNHPFFKEVDWNELR--ELKPPFVP 277

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 10/78 (12%)

Query: 104 TYNMIINVGIDKIPFPKHV--TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 161
           TY+ I++   + + FP  +  ++ A+ LI A   +    RLG  R G+ +IK H +F+  
Sbjct: 255 TYSKIMDHK-NSLTFPDDIEISKQAKDLICAFLTDRE-VRLG--RNGVDEIKSHPFFKND 310

Query: 162 DW--DGLRNQTLTPPIIP 177
            W  D +R      P++P
Sbjct: 311 QWTFDNIRET--VAPVVP 326

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 92  RPPF--CVMNDPMQTYNMIINVGIDKIPFPKHVTR--TAQSLIKALCKESPAERLGYQRG 147
           +PPF    + D +Q    I+     +   PK  +    A+ LIK    + P++R      
Sbjct: 196 KPPFSGENILDQLQLIRRILG-PPLEFDEPKWSSGSEEAKDLIKKCLNKDPSKRP----- 249

Query: 148 GIVDIKKHKWF 158
              +I +H WF
Sbjct: 250 TAEEILQHPWF 260

Length = 260

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG0616|consensus	355		100.0
KOG0694|consensus	694		100.0
KOG0598|consensus	357		100.0
KOG0614|consensus	732		100.0
KOG0690|consensus	516		99.97
KOG0605|consensus	550		99.97
KOG0986|consensus	591		99.97
KOG0696|consensus	683		99.96
KOG0592|consensus	604		99.96
KOG0610|consensus	459		99.95
KOG0615|consensus	475		99.95
KOG0612|consensus	1317		99.94
KOG0695|consensus	593		99.93
KOG0575|consensus	592		99.93
KOG0033|consensus	355		99.93
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.93
KOG0588|consensus	786		99.93
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.92
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.92
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.92
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.92
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.92
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.92
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.92
KOG0581|consensus	364		99.92
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.92
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.91
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.91
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.91
KOG0583|consensus	370		99.91
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.91
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.91
KOG0599|consensus	411		99.91
KOG0608|consensus	1034		99.9
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.9
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.9
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.9
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.9
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.9
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.9
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.9
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.9
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.9
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.89
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.89
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.89
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.89
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.89
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.89
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.89
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.89
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.88
KOG0578|consensus	550		99.88
KOG4717|consensus	864		99.88
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.87
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.87
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.87
KOG0604|consensus	400		99.87
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.87
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.86
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.86
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.86
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.86
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.86
KOG0032|consensus	382		99.86
KOG0597|consensus	808		99.86
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.86
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.85
KOG0580|consensus	281		99.85
KOG0198|consensus	313		99.85
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.85
KOG0585|consensus	576		99.85
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.85
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.85
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.85
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.84
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.84
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.84
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.84
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.83
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.83
KOG4236|consensus	888		99.83
PTZ00036	440	glycogen synthase kinase; Provisional	99.82
KOG0593|consensus	396		99.82
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.82
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.81
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.81
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.8
KOG0579|consensus	1187		99.8
KOG0595|consensus	429		99.8
KOG0201|consensus	467		99.8
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.8
KOG0582|consensus	516		99.8
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.8
KOG4279|consensus	1226		99.79
KOG0586|consensus	596		99.79
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.79
KOG0584|consensus	632		99.79
KOG0591|consensus	375		99.78
KOG0983|consensus	391		99.78
KOG0611|consensus	668		99.78
KOG0661|consensus	538		99.78
KOG0658|consensus	364		99.78
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.77
KOG0596|consensus	677		99.77
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.77
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.77
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.77
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.77
KOG0603|consensus	612		99.76
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.76
PTZ00284	467	protein kinase; Provisional	99.76
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.76
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.76
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.76
PTZ00283	496	serine/threonine protein kinase; Provisional	99.75
KOG0660|consensus	359		99.75
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.75
KOG0589|consensus	426		99.74
KOG0574|consensus	502		99.74
PTZ00267	478	NIMA-related protein kinase; Provisional	99.74
PHA03207	392	serine/threonine kinase US3; Provisional	99.74
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.74
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.74
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.73
PHA03209	357	serine/threonine kinase US3; Provisional	99.73
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.73
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.73
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.72
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.72
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.72
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.72
KOG0192|consensus	362		99.72
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.71
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.71
PHA03212	391	serine/threonine kinase US3; Provisional	99.71
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.71
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.71
KOG0577|consensus	948		99.7
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.7
KOG0659|consensus	318		99.7
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.7
KOG0663|consensus	419		99.7
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.7
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.7
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.7
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.7
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.69
KOG0607|consensus	463		99.69
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.69
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.69
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.69
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.69
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.69
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.69
KOG4645|consensus	1509		99.69
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.69
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.69
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.69
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.69
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.69
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.69
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.68
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.68
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.68
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.68
PHA03210	501	serine/threonine kinase US3; Provisional	99.68
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.68
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.68
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.67
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.67
PHA03211	461	serine/threonine kinase US3; Provisional	99.67
KOG0594|consensus	323		99.67
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.67
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.67
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.67
KOG0606|consensus	1205		99.67
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.67
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.67
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.66
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.66
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.66
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.66
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.66
KOG0600|consensus	560		99.66
KOG1027|consensus	903		99.66
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.66
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.66
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.66
KOG0603|consensus	612		99.66
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.65
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.65
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.65
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.65
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.65
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.65
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.65
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.65
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.65
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.65
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.65
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.65
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.65
PHA02988	283	hypothetical protein; Provisional	99.64
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.64
KOG0665|consensus	369		99.64
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.64
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.64
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.64
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.64
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.64
KOG0667|consensus	586		99.64
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.64
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.64
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.64
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.64
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.63
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.63
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.63
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.63
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.63
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.63
PLN00009	294	cyclin-dependent kinase A; Provisional	99.63
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.63
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.63
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.63
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.62
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.62
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.62
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.62
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.62
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.62
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.62
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.62
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.62
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.62
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.62
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.62
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.62
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.61
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.61
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.61
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.61
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.61
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.61
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.61
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.61
KOG0671|consensus	415		99.61
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.6
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.6
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.6
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.6
KOG1151|consensus	775		99.59
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.59
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.59
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.59
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.59
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.59
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.59
KOG4721|consensus	904		99.59
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.58
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.58
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.58
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.58
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.58
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.58
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.58
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.57
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.57
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.57
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.57
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.57
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.57
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.57
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.56
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.56
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.56
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.56
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.56
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.56
KOG1006|consensus	361		99.56
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.56
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.56
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.56
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.56
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.56
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.56
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.55
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.55
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.55
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.55
KOG0197|consensus	468		99.55
PHA02882	294	putative serine/threonine kinase; Provisional	99.55
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.54
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.54
KOG0670|consensus	752		99.54
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.54
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.54
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.53
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.53
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.53
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.53
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.53
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.53
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.53
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.53
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.52
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.52
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.52
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.52
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.52
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.52
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.52
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.52
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.52
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.52
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.51
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.51
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.51
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.51
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.51
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.51
PLN00181	793	protein SPA1-RELATED; Provisional	99.5
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.5
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.5
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.5
KOG0587|consensus	953		99.5
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.5
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.5
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.5
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.49
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.49
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.49
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.49
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.49
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.49
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.49
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.49
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.49
KOG0668|consensus	338		99.48
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.48
KOG0662|consensus	292		99.48
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.48
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.48
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.47
KOG0193|consensus	678		99.47
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.47
KOG0669|consensus	376		99.47
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.46
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.46
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.46
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.46
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.46
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.46
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.45
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.45
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.45
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.44
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.44
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.43
KOG0666|consensus	438		99.43
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.43
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.43
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.42
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.42
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.42
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.42
KOG1035|consensus	1351		99.4
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.39
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.39
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.39
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.39
KOG4257|consensus	974		99.39
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.39
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.36
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.36
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.35
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.34
KOG1026|consensus	774		99.33
KOG0590|consensus	601		99.31
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.31
KOG2345|consensus	302		99.28
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.28
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.27
KOG0984|consensus	282		99.27
KOG1989|consensus	738		99.21
KOG0576|consensus	829		99.18
KOG1095|consensus	1025		99.17
KOG0200|consensus	609		99.15
KOG0664|consensus	449		99.15
KOG0199|consensus	1039		99.11
KOG4250|consensus	732		99.1
KOG0194|consensus	474		99.09
KOG1187|consensus	361		98.98
KOG0196|consensus	996		98.96
KOG4278|consensus	1157		98.95
KOG1345|consensus	378		98.95
KOG1167|consensus	418		98.89
KOG1025|consensus	1177		98.88
KOG1165|consensus	449		98.87
KOG1024|consensus	563		98.87
KOG1163|consensus	341		98.86
KOG4158|consensus	598		98.85
KOG0606|consensus	1205		98.76
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.71
KOG2052|consensus	513		98.66
KOG3653|consensus	534		98.62
KOG1094|consensus	807		98.62
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	98.56
KOG1152|consensus	772		98.52
KOG1240|consensus	1431		98.41
COG0515	384	SPS1 Serine/threonine protein kinase [General func	98.33
KOG0195|consensus	448		98.32
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	98.29
KOG1290|consensus	590		98.29
KOG1164|consensus	322		98.15
PRK09188	365	serine/threonine protein kinase; Provisional	98.13
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	98.11
KOG0590|consensus	601		98.07
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	97.99
KOG1033|consensus	516		97.81
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	97.59
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	97.55
PRK12274	218	serine/threonine protein kinase; Provisional	97.47
KOG1023|consensus	484		97.18
KOG1166|consensus	974		97.14
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	96.91
PRK10345	210	hypothetical protein; Provisional	96.85
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	96.74
smart00090	237	RIO RIO-like kinase.	96.72
KOG0601|consensus	524		96.51
KOG2137|consensus	700		96.47
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	96.27
PRK09605	535	bifunctional UGMP family protein/serine/threonine	96.17
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	96.09
PRK14879	211	serine/threonine protein kinase; Provisional	95.91
smart00133	64	S_TK_X Extension to Ser/Thr-type protein kinases.	95.74
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	95.51
KOG1290|consensus	590		94.81
COG4248	637	Uncharacterized protein with protein kinase and he	94.53
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	94.03
KOG0614|consensus	732		93.78
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	93.72
KOG1266|consensus	458		93.42
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	90.4
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	89.27
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	87.84
KOG0601|consensus	524		86.36
KOG3087|consensus	229		83.37
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	81.45
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	80.36

>KOG0616|consensus

Probab=100.00  E-value=5.2e-37  Score=238.70  Aligned_cols=165  Identities=25%  Similarity=0.540  Sum_probs=150.8

Q ss_pred             hhhhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccc
Q psy3184           4 DFLKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus         4 ~~~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      ...++++|+||++|++|||++     |+||+||+++++  |. ++++|||+++.....  ++++||||.|+|   |    
T Consensus       143 e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~--G~-iKitDFGFAK~v~~r--T~TlCGTPeYLA---P----  210 (355)
T KOG0616|consen  143 EPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQN--GH-IKITDFGFAKRVSGR--TWTLCGTPEYLA---P----  210 (355)
T ss_pred             chhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccC--Cc-EEEEeccceEEecCc--EEEecCCccccC---h----
Confidence            457899999999999999998     889999999996  43 999999999987543  889999999999   9    


Q ss_pred             cchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          79 NMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        79 E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      |++..++|+.              +.|.+||. +.++.+++++|.   ...+.+|..+|.++++||+++|+.|-.+|.+.
T Consensus       211 Eii~sk~ynkavDWWalGVLIYEMlaG~pPF~-~~~~~~iY~KI~---~~~v~fP~~fs~~~kdLl~~LL~vD~t~R~gn  286 (355)
T KOG0616|consen  211 EIIQSKGYNKAVDWWALGVLIYEMLAGYPPFY-DDNPIQIYEKIL---EGKVKFPSYFSSDAKDLLKKLLQVDLTKRFGN  286 (355)
T ss_pred             HHhhcCCCCcchhHHHHHHHHHHHHcCCCCCc-CCChHHHHHHHH---hCcccCCcccCHHHHHHHHHHHhhhhHhhhcC
Confidence            9999998886              99999999 999999999999   45999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCCCCCCChhhhhcccCCCCccC-CCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP-VASILRD  184 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p-~~~~~~~  184 (185)
                      ..++.++|++||||++++|..+.++++.+||.| .+..+.|
T Consensus       287 lknG~~dIk~H~wF~~v~W~~i~~r~ie~P~~pp~~~~~gd  327 (355)
T KOG0616|consen  287 LKNGVEDIKNHPWFKGVDWEAILQRKIEPPFEPPNIHGPGD  327 (355)
T ss_pred             cCCCccccccCcccccccHHHHhhccccCCCCCccccCCcc
Confidence            898999999999999999999999999999987 5555443

>KOG0694|consensus

Probab=100.00  E-value=3.4e-36  Score=254.73  Aligned_cols=164  Identities=24%  Similarity=0.501  Sum_probs=153.3

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ++|+|++|++||+|||++     |||.+|||++.+  |+ +||+|||+++.-. .+..+.++||||.|||   |    |+
T Consensus       470 arfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~e--Gh-~kiADFGlcKe~m~~g~~TsTfCGTpey~a---P----Ei  539 (694)
T KOG0694|consen  470 ARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTE--GH-VKIADFGLCKEGMGQGDRTSTFCGTPEFLA---P----EV  539 (694)
T ss_pred             HHHHHHHHHHHHHHHHhcCceeeecchhheEEccc--Cc-EEecccccccccCCCCCccccccCChhhcC---h----hh
Confidence            678999999999999998     789999999996  44 9999999999665 6788999999999999   9    88


Q ss_pred             hhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      +....|+.              +.|++||. |++.++++..|.   .+.+.||..+|.++.++++++|.++|.+|+++.+
T Consensus       540 l~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~-gddEee~FdsI~---~d~~~yP~~ls~ea~~il~~ll~k~p~kRLG~~e  615 (694)
T KOG0694|consen  540 LTEQSYTRAVDWWGLGVLLYEMLVGESPFP-GDDEEEVFDSIV---NDEVRYPRFLSKEAIAIMRRLLRKNPEKRLGSGE  615 (694)
T ss_pred             hccCcccchhhHHHHHHHHHHHHcCCCCCC-CCCHHHHHHHHh---cCCCCCCCcccHHHHHHHHHHhccCcccccCCCC
Confidence            87777776              99999999 999999999999   6799999999999999999999999999999988


Q ss_pred             CChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      ..+++|+.||||+.++|+++.++.+.|||+|.+.++.|
T Consensus       616 ~d~~~i~~hpFFr~i~w~~L~~r~i~PPf~P~i~~~~D  653 (694)
T KOG0694|consen  616 RDAEDIKKHPFFRSIDWDDLLNRRIKPPFVPTIKGPED  653 (694)
T ss_pred             CCchhhhhCCccccCCHHHHhhccCCCCCCcccCChhh
Confidence            88999999999999999999999999999999999876

>KOG0598|consensus

Probab=100.00  E-value=8.5e-35  Score=231.72  Aligned_cols=164  Identities=28%  Similarity=0.549  Sum_probs=147.2

Q ss_pred             hhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe-ecCcccccccCCccccccCCCccccc
Q psy3184           6 LKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI-KDGKILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         6 ~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~-~~~~~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .++++.++|++||+|||++     |+||+|||++.+  |+ ++|+|||+++.. ..+..+.++|||+.|||   |    |
T Consensus       126 ~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~--GH-i~LtDFgL~k~~~~~~~~t~tfcGT~eYmA---P----E  195 (357)
T KOG0598|consen  126 RARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQ--GH-IKLTDFGLCKEDLKDGDATRTFCGTPEYMA---P----E  195 (357)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCC--Cc-EEEeccccchhcccCCCccccccCCccccC---h----H
Confidence            4788999999999999998     889999999995  54 999999999954 45567788999999999   9    9


Q ss_pred             chhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCc-cCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          80 MIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK-IPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        80 ~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~-~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ++...+|+.              ++|.+||. +.+..+++.+|. .  .+ +..|..+|.++++||+++|.+||.+|++ 
T Consensus       196 il~~~gy~~~vDWWsLGillYeML~G~pPF~-~~~~~~~~~~I~-~--~k~~~~p~~ls~~ardll~~LL~rdp~~RLg-  270 (357)
T KOG0598|consen  196 ILLGKGYDKAVDWWSLGILLYEMLTGKPPFY-AEDVKKMYDKIL-K--GKLPLPPGYLSEEARDLLKKLLKRDPRQRLG-  270 (357)
T ss_pred             HHhcCCCCcccchHhHHHHHHHHhhCCCCCc-CccHHHHHHHHh-c--CcCCCCCccCCHHHHHHHHHHhccCHHHhcC-
Confidence            999988887              99999999 999999999999 3  35 5556669999999999999999999998 


Q ss_pred             CCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      +.++++++.+||||++++|+++..+++.|||.|...+..|
T Consensus       271 ~~~d~~~ik~HpfF~~inW~~l~~k~l~PpF~P~~~~~~~  310 (357)
T KOG0598|consen  271 GPGDAEEIKRHPFFKGINWEKLLAKKLSPPFKPNVTGLED  310 (357)
T ss_pred             CCCChHHhhcCcccccCCHHHHHhcCCCCCeecCCCCccc
Confidence            4668899999999999999999999999999999987765

>KOG0614|consensus

Probab=100.00  E-value=7.7e-34  Score=234.22  Aligned_cols=169  Identities=45%  Similarity=0.851  Sum_probs=160.5

Q ss_pred             hhhhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccc
Q psy3184           4 DFLKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus         4 ~~~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      +..++++.+-+++|++|||++     ||||+|++++.+  |- +||.|||+++.+..+..++++||||.|.|   |    
T Consensus       519 d~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~--Gy-~KLVDFGFAKki~~g~KTwTFcGTpEYVA---P----  588 (732)
T KOG0614|consen  519 DYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNR--GY-LKLVDFGFAKKIGSGRKTWTFCGTPEYVA---P----  588 (732)
T ss_pred             cchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccC--Cc-eEEeehhhHHHhccCCceeeecCCccccc---c----
Confidence            456789999999999999998     889999999986  33 89999999999999999999999999999   9    


Q ss_pred             cchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          79 NMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        79 E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      |++..++++.              ++|.+||+ +.+++.+++.|. .|.+.+.+|..++..+.+||++++..+|.+|+++
T Consensus       589 EIILnKGHD~avDyWaLGIli~ELL~G~pPFs-~~dpmktYn~IL-kGid~i~~Pr~I~k~a~~Lik~LCr~~P~ERLG~  666 (732)
T KOG0614|consen  589 EIILNKGHDRAVDYWALGILIYELLTGSPPFS-GVDPMKTYNLIL-KGIDKIEFPRRITKTATDLIKKLCRDNPTERLGY  666 (732)
T ss_pred             hhhhccCcchhhHHHHHHHHHHHHHcCCCCCC-CCchHHHHHHHH-hhhhhhhcccccchhHHHHHHHHHhcCcHhhhcc
Confidence            9999888876              99999999 999999999999 8889999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      .++++.+|.+|.||-+++|..+..+.++|||+|.+.++.|
T Consensus       667 ~~~gI~DIkkH~Wf~gfdweglr~~~L~pPi~~~va~ptD  706 (732)
T KOG0614|consen  667 QKGGINDIKKHRWFEGFDWEGLRSRTLPPPIIPSVANPTD  706 (732)
T ss_pred             ccCChHHHHhhhhhhcCChhhhhhccCCCCccccCCCccc
Confidence            9999999999999999999999999999999999999887

>KOG0690|consensus

Probab=99.97  E-value=9.1e-32  Score=212.44  Aligned_cols=164  Identities=21%  Similarity=0.500  Sum_probs=151.2

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCcee-EeecCcccccccCCccccccCCCcccccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQ-VIKDGKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~-~~~~~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+++-++|++||.|||++     |+|.+|++++.+  |+ ||++|||+++ .+..+....++||||.|+|   |    |+
T Consensus       270 tRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkD--GH-IKitDFGLCKE~I~~g~t~kTFCGTPEYLA---P----EV  339 (516)
T KOG0690|consen  270 TRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKD--GH-IKITDFGLCKEEIKYGDTTKTFCGTPEYLA---P----EV  339 (516)
T ss_pred             hhhhhHHHHHHhhhhhhCCeeeeechhhhheeccC--Cc-eEeeecccchhcccccceeccccCChhhcC---c----hh
Confidence            467889999999999998     789999999997  43 9999999998 4567888999999999999   9    99


Q ss_pred             hhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      +....|+.              +.|+.||+ +.+...++..|.   ...+.||..+|++++.|+.++|.+||.+|++.-.
T Consensus       340 leDnDYgraVDWWG~GVVMYEMmCGRLPFy-n~dh~kLFeLIl---~ed~kFPr~ls~eAktLLsGLL~kdP~kRLGgGp  415 (516)
T KOG0690|consen  340 LEDNDYGRAVDWWGVGVVMYEMMCGRLPFY-NKDHEKLFELIL---MEDLKFPRTLSPEAKTLLSGLLKKDPKKRLGGGP  415 (516)
T ss_pred             hccccccceeehhhhhHHHHHHHhccCccc-ccchhHHHHHHH---hhhccCCccCCHHHHHHHHHHhhcChHhhcCCCc
Confidence            98776665              99999999 999999999998   5689999999999999999999999999999877


Q ss_pred             CChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      +.+.++.+|+||++++|++...+++.|||.|.+.|++|
T Consensus       416 dDakEi~~h~FF~~v~W~~~~~Kki~PPfKPqVtSetD  453 (516)
T KOG0690|consen  416 DDAKEIMRHRFFASVDWEATYRKKIEPPFKPQVTSETD  453 (516)
T ss_pred             hhHHHHHhhhhhccCCHHHHHHhccCCCCCCCcccccc
Confidence            78999999999999999999999999999999999987

>KOG0605|consensus

Probab=99.97  E-value=9.2e-31  Score=216.79  Aligned_cols=163  Identities=29%  Similarity=0.544  Sum_probs=141.3

Q ss_pred             hhhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec------------------------
Q psy3184           5 FLKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD------------------------   55 (185)
Q Consensus         5 ~~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~------------------------   55 (185)
                      --++++.+|+++||+.+|+.     ||||+|+||+..  |+ +||+|||++..+..                        
T Consensus       241 ~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~--GH-iKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (550)
T KOG0605|consen  241 DWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAK--GH-IKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSD  317 (550)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCC--CC-EeeccccccchhhhhhhhhhhcchhhhhhhhccCCCcc
Confidence            45788999999999999998     899999999995  55 99999999863321                        


Q ss_pred             -C-----------------------cccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCC
Q psy3184          56 -G-----------------------KILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCV   97 (185)
Q Consensus        56 -~-----------------------~~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~   97 (185)
                       .                       ....+.+|||.|||   |    |++.+++|+.              +.|.+||+ 
T Consensus       318 ~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiA---P----EVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~-  389 (550)
T KOG0605|consen  318 FPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIA---P----EVLLGKGYGKECDWWSLGCIMYEMLVGYPPFC-  389 (550)
T ss_pred             ccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccc---h----HHHhcCCCCccccHHHHHHHHHHHHhCCCCCC-
Confidence             0                       01134689999999   9    9999999886              99999999 


Q ss_pred             CCChHHHHHHHHhcCCCccCCCC--CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCc
Q psy3184          98 MNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI  175 (185)
Q Consensus        98 ~~~~~~~~~~i~~~~~~~~~~p~--~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~  175 (185)
                      ++++++++.+|. .|...+.+|.  .+|++++|||.+||. ||.+|++.  .++++|+.||||++++|+.+...  .|||
T Consensus       390 s~tp~~T~rkI~-nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RLG~--~G~~EIK~HPfF~~v~W~~l~~~--~apf  463 (550)
T KOG0605|consen  390 SETPQETYRKIV-NWRETLKFPEEVDLSDEAKDLITRLLC-DPENRLGS--KGAEEIKKHPFFKGVDWDHLREM--PAPF  463 (550)
T ss_pred             CCCHHHHHHHHH-HHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhcCc--ccHHHHhcCCccccCCcchhhcC--CCCC
Confidence            999999999999 7766688884  589999999999998 99999983  68999999999999999998877  5999


Q ss_pred             cCCCCCCCC
Q psy3184         176 IPVASILRD  184 (185)
Q Consensus       176 ~p~~~~~~~  184 (185)
                      +|.+.++.|
T Consensus       464 vP~v~~~~D  472 (550)
T KOG0605|consen  464 VPQVNSELD  472 (550)
T ss_pred             CCCCCCccc
Confidence            999998876

>KOG0986|consensus

Probab=99.97  E-value=1.8e-30  Score=211.88  Aligned_cols=161  Identities=24%  Similarity=0.413  Sum_probs=143.7

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      +.++|+||++||++||+.     |+||+|||++..  |+ +.|+|.|++..+..+......+||.+|||   |    |++
T Consensus       289 a~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~--Gh-vRISDLGLAvei~~g~~~~~rvGT~GYMA---P----Evl  358 (591)
T KOG0986|consen  289 ARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDH--GH-VRISDLGLAVEIPEGKPIRGRVGTVGYMA---P----EVL  358 (591)
T ss_pred             HHHHHHHHHhhHHHHHhcceeeccCChhheeeccC--CC-eEeeccceEEecCCCCccccccCcccccC---H----HHH
Confidence            568899999999999997     899999999985  54 99999999999988888888899999999   9    999


Q ss_pred             hccCcce--------------eccCCCCCCC---CChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVM---NDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~---~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ....|+.              +.|+.||.+.   ...+++-+++.   .++..+|+.+|+++++|.+.+|.+||.+|+++
T Consensus       359 ~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~---~~~~ey~~kFS~eakslc~~LL~Kdp~~RLGc  435 (591)
T KOG0986|consen  359 QNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTL---EDPEEYSDKFSEEAKSLCEGLLTKDPEKRLGC  435 (591)
T ss_pred             cCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHh---cchhhcccccCHHHHHHHHHHHccCHHHhccC
Confidence            8877876              8999999732   22345666676   57889999999999999999999999999999


Q ss_pred             CCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCC
Q psy3184         145 QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS  180 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~  180 (185)
                      ..+++++++.||||++++|+.+..+.+.|||+|+..
T Consensus       436 rg~ga~evk~HpfFk~lnw~rleagml~PPfiPdp~  471 (591)
T KOG0986|consen  436 RGEGAQEVKEHPFFKDLNWRRLEAGMLEPPFIPDPG  471 (591)
T ss_pred             CCcCcchhhhCcccccCCHhHHhccCCCCCCCCCcc
Confidence            888999999999999999999999999999998754

>KOG0696|consensus

Probab=99.96  E-value=3.9e-29  Score=202.67  Aligned_cols=163  Identities=22%  Similarity=0.438  Sum_probs=148.8

Q ss_pred             hhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCccccc
Q psy3184           6 LKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         6 ~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .+.++|++|+.||=+||++     |||.+|++++++  |+ |+++|||+++.-.. +.++.++||||.|+|   |    |
T Consensus       451 ~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~e--GH-iKi~DFGmcKEni~~~~TTkTFCGTPdYiA---P----E  520 (683)
T KOG0696|consen  451 VAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSE--GH-IKIADFGMCKENIFDGVTTKTFCGTPDYIA---P----E  520 (683)
T ss_pred             hhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccC--Cc-eEeeecccccccccCCcceeeecCCCcccc---c----c
Confidence            4678899999999999998     789999999996  43 99999999986544 467789999999999   9    9


Q ss_pred             chhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          80 MIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        80 ~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      ++..++|+.              +.|++||. +.+..++++.|.   .-..+||.++|.++.++++++|.+.|.+|+++-
T Consensus       521 Ii~YqPYgksvDWWa~GVLLyEmlaGQpPFd-GeDE~elF~aI~---ehnvsyPKslSkEAv~ickg~ltK~P~kRLGcg  596 (683)
T KOG0696|consen  521 IIAYQPYGKSVDWWAFGVLLYEMLAGQPPFD-GEDEDELFQAIM---EHNVSYPKSLSKEAVAICKGLLTKHPGKRLGCG  596 (683)
T ss_pred             eEEecccccchhHHHHHHHHHHHHcCCCCCC-CCCHHHHHHHHH---HccCcCcccccHHHHHHHHHHhhcCCccccCCC
Confidence            998888875              99999999 999999999999   558999999999999999999999999999997


Q ss_pred             CCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      ...-+++..||||+.++|.++++++++|||.|.+.-.
T Consensus       597 ~~ge~di~~H~FFR~iDWek~E~~eiqPPfkPk~k~~  633 (683)
T KOG0696|consen  597 PEGERDIREHPFFRRIDWEKLERREIQPPFKPKIKCG  633 (683)
T ss_pred             CccccchhhCcchhhccHHHHhhccCCCCCCCccccC
Confidence            7788999999999999999999999999999998543

>KOG0592|consensus

Probab=99.96  E-value=2.3e-29  Score=208.83  Aligned_cols=148  Identities=21%  Similarity=0.424  Sum_probs=129.4

Q ss_pred             hhhhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--------------cccccccC
Q psy3184           4 DFLKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--------------KILRLLSG   64 (185)
Q Consensus         4 ~~~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--------------~~~~~~~g   64 (185)
                      +.=+++.|+||+.||+|||++     ||||+|||+++|.+   ++|+|||-++.+...              ....+++|
T Consensus       173 e~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmh---ikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVG  249 (604)
T KOG0592|consen  173 ETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGH---IKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVG  249 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCc---EEEeeccccccCChhhccccCccCcccccCcccceee
Confidence            344678899999999999998     88999999999853   999999999977542              11256999


Q ss_pred             CccccccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHH
Q psy3184          65 RPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLI  130 (185)
Q Consensus        65 t~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li  130 (185)
                      |..|.+   |    |++....-+.              +.|.+||. +.|.--++++|.   ...+.||+.+++.+++||
T Consensus       250 TAeYVS---P----ElL~~~~~~~~sDiWAlGCilyQmlaG~PPFr-a~NeyliFqkI~---~l~y~fp~~fp~~a~dLv  318 (604)
T KOG0592|consen  250 TAEYVS---P----ELLNDSPAGPSSDLWALGCILYQMLAGQPPFR-AANEYLIFQKIQ---ALDYEFPEGFPEDARDLI  318 (604)
T ss_pred             eecccC---H----HHhcCCCCCcccchHHHHHHHHHHhcCCCCCc-cccHHHHHHHHH---HhcccCCCCCCHHHHHHH
Confidence            999999   9    8887654332              99999999 999999999999   568999999999999999


Q ss_pred             HHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhccc
Q psy3184         131 KALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQT  170 (185)
Q Consensus       131 ~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~  170 (185)
                      +++|.+||.+|+     ++++|++||||.+++|+.++++.
T Consensus       319 ~KLLv~dp~~Rl-----t~~qIk~HpFF~~Vdw~nlw~~~  353 (604)
T KOG0592|consen  319 KKLLVRDPSDRL-----TSQQIKAHPFFEGVDWENLWQQT  353 (604)
T ss_pred             HHHHccCccccc-----cHHHHhhCcccccCChhhhhhcC
Confidence            999999999999     45999999999999999999874

>KOG0610|consensus

Probab=99.95  E-value=2.7e-28  Score=197.08  Aligned_cols=161  Identities=25%  Similarity=0.432  Sum_probs=133.5

Q ss_pred             hhhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-------------------------
Q psy3184           5 FLKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-------------------------   54 (185)
Q Consensus         5 ~~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-------------------------   54 (185)
                      -.++++|++|+.||+|||-+     ||||+||||..+  |+ |.|+||.++....                         
T Consensus       179 ~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvred--GH-IMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~  255 (459)
T KOG0610|consen  179 SAARFYAAEVLLALEYLHMLGIVYRDLKPENILVRED--GH-IMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQP  255 (459)
T ss_pred             hhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecC--Cc-EEeeeccccccCCCCCeeeccCCCCCCCCCcccccccc
Confidence            46789999999999999988     889999999997  44 9999997643110                         


Q ss_pred             --c------------------------------CcccccccCCccccccCCCcccccchhccCcce--------------
Q psy3184          55 --D------------------------------GKILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------   88 (185)
Q Consensus        55 --~------------------------------~~~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------   88 (185)
                        +                              +....+++||..|+|   |    |++.+.+++.              
T Consensus       256 s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlA---P----EvI~G~GHgsAVDWWtfGIflYEm  328 (459)
T KOG0610|consen  256 SCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLA---P----EVIRGEGHGSAVDWWTFGIFLYEM  328 (459)
T ss_pred             cccccchhccccccccccccccccchhhhcCCCCcccccccccccccc---c----eeeecCCCCchhhHHHHHHHHHHH
Confidence              0                              012235789999999   9    9999988886              


Q ss_pred             eccCCCCCCCCChHHHHHHHHhcCCCccCCCC--CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhh
Q psy3184          89 IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGL  166 (185)
Q Consensus        89 l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~--~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~  166 (185)
                      ++|.+||. |.+.++++.+|+   ..++.+|.  .+|..++|||+++|.+||.+|+++ ..++.+|++||||++++|.-+
T Consensus       329 LyG~TPFK-G~~~~~Tl~NIv---~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~-~rGA~eIK~HpFF~gVnWaLi  403 (459)
T KOG0610|consen  329 LYGTTPFK-GSNNKETLRNIV---GQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRLGS-KRGAAEIKRHPFFEGVNWALI  403 (459)
T ss_pred             HhCCCCcC-CCCchhhHHHHh---cCCCcCCCCCcchhHHHHHHHHHhccChhhhhcc-ccchHHhhcCccccCCChhhe
Confidence            99999999 999999999999   45788884  589999999999999999999987 445699999999999999933


Q ss_pred             hcccCCCCccCCCCCC
Q psy3184         167 RNQTLTPPIIPVASIL  182 (185)
Q Consensus       167 ~~~~~~~p~~p~~~~~  182 (185)
                      .  ...||++|.....
T Consensus       404 r--~~~PP~iP~~~d~  417 (459)
T KOG0610|consen  404 R--CARPPEIPKPVDG  417 (459)
T ss_pred             e--ccCCCcCCCcccc
Confidence            3  3589999877643

>KOG0615|consensus

Probab=99.95  E-value=3.7e-28  Score=196.27  Aligned_cols=144  Identities=20%  Similarity=0.333  Sum_probs=121.1

Q ss_pred             hhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccc
Q psy3184           6 LKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         6 ~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      +.++...|++.||.|||++     ||||+|||+..+.....+|++|||+++..+.+....++||||.|.|   |    |+
T Consensus       277 ~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvA---P----EV  349 (475)
T KOG0615|consen  277 LGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVA---P----EV  349 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhccccceehhhhcCCccccC---h----hh
Confidence            3466789999999999998     8899999999875556699999999999988888999999999999   9    99


Q ss_pred             hhccCcce-----------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCcc
Q psy3184          81 IINVGIDN-----------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        81 ~~~~~~~~-----------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R  141 (185)
                      +..+++..                 ++|.+||.+......+.+.|. .|...+.-|  ..+|.++.+||++||..||.+|
T Consensus       350 l~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~-~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R  428 (475)
T KOG0615|consen  350 LASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQIL-KGRYAFGPLQWDRISEEALDLINWMLVVDPENR  428 (475)
T ss_pred             eecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHHh-cCcccccChhhhhhhHHHHHHHHHhhEeCcccC
Confidence            98876543                 999999994445555888888 552222222  4689999999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCCCC
Q psy3184         142 LGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       142 ~~~~~~~~~~ll~hp~f~~~~  162 (185)
                      |     ++.++|+||||+.++
T Consensus       429 ~-----s~~eaL~hpW~~~~~  444 (475)
T KOG0615|consen  429 P-----SADEALNHPWFKDAP  444 (475)
T ss_pred             c-----CHHHHhcChhhhccc
Confidence            9     669999999999765

>KOG0612|consensus

Probab=99.94  E-value=3.4e-27  Score=208.78  Aligned_cols=163  Identities=28%  Similarity=0.542  Sum_probs=138.3

Q ss_pred             hhhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCccc
Q psy3184           5 FLKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQT   77 (185)
Q Consensus         5 ~~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~   77 (185)
                      .+++|+.++|+.||..+|+.     |+||+|+||+..  |+ |+|+|||.+-.++.++.  ..+-+|||.|.+   |   
T Consensus       175 ~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~--GH-ikLADFGsClkm~~dG~V~s~~aVGTPDYIS---P---  245 (1317)
T KOG0612|consen  175 DWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKS--GH-IKLADFGSCLKMDADGTVRSSVAVGTPDYIS---P---  245 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHhccceeccCCcceeEeccc--Cc-EeeccchhHHhcCCCCcEEeccccCCCCccC---H---
Confidence            57899999999999999998     899999999996  54 99999999877764433  345689999999   9   


Q ss_pred             ccchhcc-----Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhc
Q psy3184          78 YNMIINV-----GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKE  136 (185)
Q Consensus        78 ~E~~~~~-----~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~  136 (185)
                       |++...     .|+.              ++|.+||+ +++..++|.+|.+ -...+.||  ..+|.++++||.+++. 
T Consensus       246 -EvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFY-adslveTY~KIm~-hk~~l~FP~~~~VSeeakdLI~~ll~-  321 (1317)
T KOG0612|consen  246 -EVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFY-ADSLVETYGKIMN-HKESLSFPDETDVSEEAKDLIEALLC-  321 (1317)
T ss_pred             -HHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcch-HHHHHHHHHHHhc-hhhhcCCCcccccCHHHHHHHHHHhc-
Confidence             666532     2443              99999999 9999999999983 23578888  5699999999999886 


Q ss_pred             CcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         137 SPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       137 dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      +|..|++.  ++++++.+||||.+++|+.+...  .|||+|++.|+.|
T Consensus       322 ~~e~RLgr--ngiedik~HpFF~g~~W~~iR~~--~pP~vPevssd~D  365 (1317)
T KOG0612|consen  322 DREVRLGR--NGIEDIKNHPFFEGIDWDNIRES--VPPVVPEVSSDDD  365 (1317)
T ss_pred             Chhhhccc--ccHHHHHhCccccCCChhhhhhc--CCCCCCcCCCCCc
Confidence            79999964  57899999999999999887665  8999999999987

>KOG0695|consensus

Probab=99.93  E-value=3.1e-26  Score=182.07  Aligned_cols=167  Identities=22%  Similarity=0.456  Sum_probs=143.6

Q ss_pred             hhhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeE-eecCcccccccCCccccccCCCcccc
Q psy3184           5 FLKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQV-IKDGKILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus         5 ~~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~-~~~~~~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      -.++++.++|..||.|||++     |+|.+|+|++.+  ++ +||+|+|.++. +..+..++++||||.|.|   |    
T Consensus       351 eharfys~ei~lal~flh~rgiiyrdlkldnvlldae--gh-ikltdygmcke~l~~gd~tstfcgtpnyia---p----  420 (593)
T KOG0695|consen  351 EHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAE--GH-IKLTDYGMCKEGLGPGDTTSTFCGTPNYIA---P----  420 (593)
T ss_pred             HHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccC--Cc-eeecccchhhcCCCCCcccccccCCCcccc---h----
Confidence            35789999999999999998     789999999996  43 99999999984 466788999999999999   9    


Q ss_pred             cchhccCcce--------------eccCCCCCC--CC----ChH-HHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcC
Q psy3184          79 NMIINVGIDN--------------IFSRPPFCV--MN----DPM-QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKES  137 (185)
Q Consensus        79 E~~~~~~~~~--------------l~g~~Pf~~--~~----~~~-~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~d  137 (185)
                      |++.+..|+.              +.|+.||..  .+    |.+ -+++-|.   ...+.+|.++|-.+..++++.|.+|
T Consensus       421 eilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvil---ekqiriprslsvkas~vlkgflnkd  497 (593)
T KOG0695|consen  421 EILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVIL---EKQIRIPRSLSVKASHVLKGFLNKD  497 (593)
T ss_pred             hhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHh---hhcccccceeehhhHHHHHHhhcCC
Confidence            9999887776              899999942  12    223 3456666   4589999999999999999999999


Q ss_pred             cCcccCCC-CCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         138 PAERLGYQ-RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       138 p~~R~~~~-~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      |.+|+++. +-++.++..|+||+.++|+.|+++.+.|||.|.+.++.+
T Consensus       498 p~erlgc~~~~g~~dik~h~ffr~idwd~leqk~v~ppf~p~i~~d~~  545 (593)
T KOG0695|consen  498 PKERLGCRPQTGFSDIKSHAFFRSIDWDLLEQKQVLPPFQPQITDDYG  545 (593)
T ss_pred             cHHhcCCCcccchhhhhcchhhhhCCHHHHhhcccCCCCCCccccccC
Confidence            99999875 346789999999999999999999999999999987754

>KOG0575|consensus

Probab=99.93  E-value=5e-26  Score=191.09  Aligned_cols=134  Identities=23%  Similarity=0.431  Sum_probs=122.5

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ++...-||+.||.|||+.     |||.+|++++++.   ++|++|||++..+... ....++||||.|.|   |    |+
T Consensus       120 ary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~---~VKIgDFGLAt~le~~~Erk~TlCGTPNYIA---P----EV  189 (592)
T KOG0575|consen  120 ARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENM---NVKIGDFGLATQLEYDGERKKTLCGTPNYIA---P----EV  189 (592)
T ss_pred             HHHHHHHHHHHHHHHHhcCceecccchhheeecCcC---cEEecccceeeeecCcccccceecCCCcccC---h----hH
Confidence            445578999999999998     8999999999975   5999999999988754 77889999999999   9    99


Q ss_pred             hhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      +...+++.              +.|++||. ..+.++++.+|.   ...+.+|..+|.++++||.++|..||.+||    
T Consensus       190 l~k~gHsfEvDiWSlGcvmYtLL~G~PPFe-tk~vkety~~Ik---~~~Y~~P~~ls~~A~dLI~~lL~~~P~~Rp----  261 (592)
T KOG0575|consen  190 LNKSGHSFEVDIWSLGCVMYTLLVGRPPFE-TKTVKETYNKIK---LNEYSMPSHLSAEAKDLIRKLLRPNPSERP----  261 (592)
T ss_pred             hccCCCCCchhhhhhhhHHHhhhhCCCCcc-cchHHHHHHHHH---hcCcccccccCHHHHHHHHHHhcCCcccCC----
Confidence            99888876              99999999 999999999999   568999999999999999999999999999    


Q ss_pred             CChhhhhcCCCCC
Q psy3184         147 GGIVDIKKHKWFQ  159 (185)
Q Consensus       147 ~~~~~ll~hp~f~  159 (185)
                       ++++++.|+||+
T Consensus       262 -sl~~vL~h~Ff~  273 (592)
T KOG0575|consen  262 -SLDEVLDHPFFK  273 (592)
T ss_pred             -CHHHHhcCHhhh
Confidence             779999999993

>KOG0033|consensus

Probab=99.93  E-value=1.2e-25  Score=171.81  Aligned_cols=134  Identities=23%  Similarity=0.422  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhccC
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVG   85 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~~   85 (185)
                      ..||++||.|||.+     |+||.|+++.+..++.-+||++||.+..+..+.....+.|||.|||   |    |++...+
T Consensus       116 ~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fma---P----Evvrkdp  188 (355)
T KOG0033|consen  116 IQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAWHGFAGTPGYLS---P----EVLKKDP  188 (355)
T ss_pred             HHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeCCccccccccCCCcccC---H----HHhhcCC
Confidence            57999999999998     7899999999877777799999999998886666777999999999   9    9999888


Q ss_pred             cce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          86 IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        86 ~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      |+.              +.|.+||. +.+...+++.|. .|  .+.+|    ..+|+++++||++||..||.+|+     
T Consensus       189 y~kpvDiW~cGViLfiLL~G~~PF~-~~~~~rlye~I~-~g--~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRI-----  259 (355)
T KOG0033|consen  189 YSKPVDIWACGVILYILLVGYPPFW-DEDQHRLYEQIK-AG--AYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRI-----  259 (355)
T ss_pred             CCCcchhhhhhHHHHHHHhCCCCCC-CccHHHHHHHHh-cc--ccCCCCcccCcCCHHHHHHHHHHhccChhhhc-----
Confidence            886              99999999 999999999999 45  55555    36899999999999999999999     


Q ss_pred             ChhhhhcCCCCCC
Q psy3184         148 GIVDIKKHKWFQG  160 (185)
Q Consensus       148 ~~~~ll~hp~f~~  160 (185)
                      ++.+.|+|||+..
T Consensus       260 ta~EAL~HpWi~~  272 (355)
T KOG0033|consen  260 TADEALKHPWICN  272 (355)
T ss_pred             cHHHHhCCchhcc
Confidence            6699999999975

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.93  E-value=2.9e-25  Score=179.91  Aligned_cols=162  Identities=22%  Similarity=0.485  Sum_probs=135.6

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++... .+......+||+.|+|   |    |++.
T Consensus        99 ~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~---~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~a---P----E~~~  168 (323)
T cd05571          99 FYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDG---HIKITDFGLCKEGISDGATMKTFCGTPEYLA---P----EVLE  168 (323)
T ss_pred             HHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCC---CEEEeeCCCCcccccCCCcccceecCccccC---h----hhhc
Confidence            3468999999999998     7999999998853   39999999987532 2334456789999999   9    8877


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..|+.              ++|..||. +.+.......+.   .....+|..++.++.+||++||..||.+|++....+
T Consensus       169 ~~~~~~~~DiwSlG~il~elltg~~Pf~-~~~~~~~~~~~~---~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~  244 (323)
T cd05571         169 DNDYGRAVDWWGLGVVMYEMMCGRLPFY-NQDHEKLFELIL---MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPED  244 (323)
T ss_pred             CCCCCccccCcccchhhhhhhcCCCCCC-CCCHHHHHHHHH---cCCCCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCC
Confidence            655544              88999999 888888887777   346788899999999999999999999999766667


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      +.++++||||++++|..+..+.+.||+.|...+..|
T Consensus       245 ~~~ll~h~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (323)
T cd05571         245 AKEIMEHRFFASINWQDVVQKKLEPPFKPQVTSETD  280 (323)
T ss_pred             HHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCCcch
Confidence            899999999999999999998889998887766543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0588|consensus

Probab=99.93  E-value=9.4e-26  Score=191.12  Aligned_cols=133  Identities=20%  Similarity=0.360  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhccC
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVG   85 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~~   85 (185)
                      -.||+.|+.|||+.     |+||+|+|++..  . +||++|||++.+-..+.+..+.||+|.|.|   |    |++.+.+
T Consensus       118 f~QIi~gv~yCH~~~icHRDLKpENlLLd~~--~-nIKIADFGMAsLe~~gklLeTSCGSPHYA~---P----EIV~G~p  187 (786)
T KOG0588|consen  118 FRQILDGVSYCHAFNICHRDLKPENLLLDVK--N-NIKIADFGMASLEVPGKLLETSCGSPHYAA---P----EIVSGRP  187 (786)
T ss_pred             HHHHHHHHHHHhhhcceeccCCchhhhhhcc--c-CEeeeccceeecccCCccccccCCCcccCC---c----hhhcCCC
Confidence            46999999999986     899999999984  3 499999999998888999999999999999   9    9999999


Q ss_pred             cce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          86 IDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        86 ~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      |+.               ++|..||. ++|...++.++. .|  .+..|..+|.++++||.+||..||.+|++.     +
T Consensus       188 YdG~~sDVWSCGVILfALLtG~LPFd-DdNir~LLlKV~-~G--~f~MPs~Is~eaQdLLr~ml~VDp~~RiT~-----~  258 (786)
T KOG0588|consen  188 YDGRPSDVWSCGVILFALLTGKLPFD-DDNIRVLLLKVQ-RG--VFEMPSNISSEAQDLLRRMLDVDPSTRITT-----E  258 (786)
T ss_pred             CCCCccccchhHHHHHHHHhCCCCCC-CccHHHHHHHHH-cC--cccCCCcCCHHHHHHHHHHhccCccccccH-----H
Confidence            987               99999999 999999999999 55  999999999999999999999999999954     9


Q ss_pred             hhhcCCCCCCCC
Q psy3184         151 DIKKHKWFQGFD  162 (185)
Q Consensus       151 ~ll~hp~f~~~~  162 (185)
                      +|++|||+.+..
T Consensus       259 eI~kHP~l~g~~  270 (786)
T KOG0588|consen  259 EILKHPFLSGYT  270 (786)
T ss_pred             HHhhCchhhcCC
Confidence            999999997653

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.92  E-value=9.6e-25  Score=177.40  Aligned_cols=157  Identities=26%  Similarity=0.497  Sum_probs=132.8

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++....  .....+||+.|+|   |    |++..
T Consensus       122 ~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~---~~kl~Dfg~~~~~~~--~~~~~~gt~~y~a---P----E~~~~  189 (329)
T PTZ00263        122 FYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKG---HVKVTDFGFAKKVPD--RTFTLCGTPEYLA---P----EVIQS  189 (329)
T ss_pred             HHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCC---CEEEeeccCceEcCC--CcceecCChhhcC---H----HHHcC
Confidence            4468999999999998     8999999998853   499999999986643  2345689999999   9    88776


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. +.+..+.+..+. .  ..+.+|..++.++++||++||..||.+|++..++++
T Consensus       190 ~~~~~~~DiwslG~il~elltg~~pf~-~~~~~~~~~~i~-~--~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~  265 (329)
T PTZ00263        190 KGHGKAVDWWTMGVLLYEFIAGYPPFF-DDTPFRIYEKIL-A--GRLKFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGV  265 (329)
T ss_pred             CCCCCcceeechHHHHHHHHcCCCCCC-CCCHHHHHHHHh-c--CCcCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCH
Confidence            65543              89999999 888888888888 3  467888889999999999999999999998777889


Q ss_pred             hhhhcCCCCCCCChhhhhcccCCCCccCCCCC
Q psy3184         150 VDIKKHKWFQGFDWDGLRNQTLTPPIIPVASI  181 (185)
Q Consensus       150 ~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~  181 (185)
                      ++++.||||++.+|..+..+.+.+|+.+.+.+
T Consensus       266 ~~ll~hp~f~~~~~~~~~~~~~~~~~~~~~~~  297 (329)
T PTZ00263        266 ADVKNHPYFHGANWDKLYARYYPAPIPVRVKS  297 (329)
T ss_pred             HHHhcCCccCCCCHHHHHhCCCCCCcCCCCCC
Confidence            99999999999999999888888887665543

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.92  E-value=8e-25  Score=174.22  Aligned_cols=156  Identities=21%  Similarity=0.371  Sum_probs=127.8

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.|++.||+|||+.     ||||+||+++.+.   .++|+|||.+.............||+.|+|   |    |++.+
T Consensus       106 ~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~---~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~a---P----E~~~~  175 (285)
T cd05631         106 FYAAELCCGLEDLQRERIVYRDLKPENILLDDRG---HIRISDLGLAVQIPEGETVRGRVGTVGYMA---P----EVINN  175 (285)
T ss_pred             HHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCC---CEEEeeCCCcEEcCCCCeecCCCCCCCccC---H----hhhcC
Confidence            3478999999999997     8999999998753   389999999987655444556789999999   9    88776


Q ss_pred             cCcce--------------eccCCCCCCCCChH----HHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPM----QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~----~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      ..|+.              ++|..||. +.+..    .....+.   .....++..+|.++.+||++||..||.+|+++.
T Consensus       176 ~~~~~~~DvwslGvil~el~~g~~pf~-~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~  251 (285)
T cd05631         176 EKYTFSPDWWGLGCLIYEMIQGQSPFR-KRKERVKREEVDRRVK---EDQEEYSEKFSEDAKSICRMLLTKNPKERLGCR  251 (285)
T ss_pred             CCCCcccCchhHHHHHHHHHhCCCCCC-CCCcchhHHHHHHHhh---cccccCCccCCHHHHHHHHHHhhcCHHHhcCCC
Confidence            55554              88999998 54432    2333333   235667788999999999999999999999876


Q ss_pred             CCChhhhhcCCCCCCCChhhhhcccCCCCccCC
Q psy3184         146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPV  178 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~  178 (185)
                      +.+++++++||||++++|..+.++.+.|||.|+
T Consensus       252 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~  284 (285)
T cd05631         252 GNGAAGVKQHPIFKNINFKRLEANMLEPPFCPD  284 (285)
T ss_pred             CCCHHHHhcCHhhcCCCHHHHHhCcCCcCCCCC
Confidence            667899999999999999999999999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.92  E-value=1.7e-24  Score=176.96  Aligned_cols=160  Identities=25%  Similarity=0.493  Sum_probs=135.6

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ...+.||+.||+|||++     ||||+||+++.+  + .++|+|||+++....  ...+.+||+.|||   |    |++.
T Consensus       134 ~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~--~-~ikL~DFG~a~~~~~--~~~~~~gt~~y~a---P----E~~~  201 (340)
T PTZ00426        134 CFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKD--G-FIKMTDFGFAKVVDT--RTYTLCGTPEYIA---P----EILL  201 (340)
T ss_pred             HHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCC--C-CEEEecCCCCeecCC--CcceecCChhhcC---H----HHHh
Confidence            34578999999999997     899999999875  3 499999999986543  3346789999999   9    8776


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..++.              ++|..||. +.+....+..+. .  ....+|..++.+++++|++||..||.+|++..+.+
T Consensus       202 ~~~~~~~~DiwSlGvil~ell~G~~Pf~-~~~~~~~~~~i~-~--~~~~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~  277 (340)
T PTZ00426        202 NVGHGKAADWWTLGIFIYEILVGCPPFY-ANEPLLIYQKIL-E--GIIYFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKG  277 (340)
T ss_pred             CCCCCccccccchhhHHHHHhcCCCCCC-CCCHHHHHHHHh-c--CCCCCCCCCCHHHHHHHHHHcccCHHHcCCCCCCC
Confidence            554443              89999999 888888888888 3  36778889999999999999999999999877788


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                      +++++.||||++++|..+..+.+.+|+.|......
T Consensus       278 ~~~~~~hp~f~~~~~~~~~~~~~~~~~~p~~~~~~  312 (340)
T PTZ00426        278 AQNVKEHPWFGNIDWVSLLHKNVEVPYKPKYKNVF  312 (340)
T ss_pred             HHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCCCc
Confidence            99999999999999999999989999999876543

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=1.5e-24  Score=173.24  Aligned_cols=161  Identities=29%  Similarity=0.590  Sum_probs=137.1

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||+|||++     ||||+||+++.+  + .++|+|||+++....  .....+||+.|+|   |    |++.+
T Consensus       105 ~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~--~-~~kl~Dfg~~~~~~~--~~~~~~gt~~y~a---P----E~~~~  172 (291)
T cd05612         105 FYASEIVCALEYLHSKEIVYRDLKPENILLDKE--G-HIKLTDFGFAKKLRD--RTWTLCGTPEYLA---P----EVIQS  172 (291)
T ss_pred             HHHHHHHHHHHHHHHCCeeecCCCHHHeEECCC--C-CEEEEecCcchhccC--CcccccCChhhcC---H----HHHcC
Confidence            3478999999999998     799999999875  3 399999999876533  2345689999999   9    87776


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. +.+..+.+..+. .  ....+|..++..+++||++||..||.+|++..+.++
T Consensus       173 ~~~~~~~DiwSlG~il~~l~~g~~pf~-~~~~~~~~~~i~-~--~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~  248 (291)
T cd05612         173 KGHNKAVDWWALGILIYEMLVGYPPFF-DDNPFGIYEKIL-A--GKLEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGA  248 (291)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHH-h--CCcCCCccCCHHHHHHHHHHcCCCHHHccCCccCCH
Confidence            55554              89999999 888888888888 3  467888889999999999999999999998777789


Q ss_pred             hhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCCC
Q psy3184         150 VDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRDE  185 (185)
Q Consensus       150 ~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~~  185 (185)
                      ++++.||||+.++|..+......||..|.+...+|+
T Consensus       249 ~~~l~h~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  284 (291)
T cd05612         249 DDVKNHRWFKSVDWDDVPQRKLKPPIVPKVSHDGDT  284 (291)
T ss_pred             HHHhcCccccCCCHHHHhcCCCCCCEeCCCCCcccc
Confidence            999999999999999999888899999998877653

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.92  E-value=2e-24  Score=175.57  Aligned_cols=162  Identities=20%  Similarity=0.474  Sum_probs=134.3

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.... .......+||+.|+|   |    |++.
T Consensus        99 ~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~---~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  168 (328)
T cd05593          99 FYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDG---HIKITDFGLCKEGITDAATMKTFCGTPEYLA---P----EVLE  168 (328)
T ss_pred             HHHHHHHHHHHHHHhCCeEecccCHHHeEECCCC---cEEEecCcCCccCCCcccccccccCCcCccC---h----hhhc
Confidence            3478999999999998     7999999998753   399999999875322 233445789999999   9    8776


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..++.              ++|..||. +.+..+....+.   .....+|..++.++.+||++||..||.+|++....+
T Consensus       169 ~~~~~~~~DiwslGvil~elltG~~Pf~-~~~~~~~~~~~~---~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~  244 (328)
T cd05593         169 DNDYGRAVDWWGLGVVMYEMMCGRLPFY-NQDHEKLFELIL---MEDIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDD  244 (328)
T ss_pred             CCCCCccCCccccchHHHHHhhCCCCCC-CCCHHHHHHHhc---cCCccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCC
Confidence            554443              88999998 778777777776   346788889999999999999999999999766678


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      +.++++||||.+.+|..+....+.+|+.|...++.|
T Consensus       245 ~~~il~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (328)
T cd05593         245 AKEIMRHSFFTGVNWQDVYDKKLVPPFKPQVTSETD  280 (328)
T ss_pred             HHHHhcCCCcCCCCHHHHHhCCCCCCcCCcCCCcch
Confidence            899999999999999999988888998888776543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.92  E-value=2.5e-24  Score=174.34  Aligned_cols=162  Identities=21%  Similarity=0.427  Sum_probs=134.0

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.... +......+||+.|+|   |    |++.
T Consensus       100 ~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~---~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  169 (320)
T cd05590         100 FYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEG---HCKLADFGMCKEGIFNGKTTSTFCGTPDYIA---P----EILQ  169 (320)
T ss_pred             HHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCC---cEEEeeCCCCeecCcCCCcccccccCccccC---H----HHHc
Confidence            3578999999999998     7999999998853   399999999875432 334456789999999   9    8776


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC-C
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-G  147 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~-~  147 (185)
                      +..|+.              ++|..||. +.+..+++..+.   ...+.+|..++.++.+||++||..||.+|+++.. +
T Consensus       170 ~~~~~~~~DiwslG~il~el~~g~~Pf~-~~~~~~~~~~i~---~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~~  245 (320)
T cd05590         170 EMLYGPSVDWWAMGVLLYEMLCGHAPFE-AENEDDLFEAIL---NDEVVYPTWLSQDAVDILKAFMTKNPTMRLGSLTLG  245 (320)
T ss_pred             CCCCCCccchhhhHHHHHHHhhCCCCCC-CCCHHHHHHHHh---cCCCCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCC
Confidence            555443              88999999 888888888888   3467788889999999999999999999996532 2


Q ss_pred             ChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         148 GIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       148 ~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      +.++++.||||++++|..+..+.+.|||.|...+..|
T Consensus       246 ~~~~~~~h~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (320)
T cd05590         246 GEEAILRHPFFKELDWEKLNRRQIEPPFRPRIKSRED  282 (320)
T ss_pred             CHHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCCcch
Confidence            3489999999999999999988889999998876543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.92  E-value=3.2e-24  Score=173.86  Aligned_cols=161  Identities=22%  Similarity=0.442  Sum_probs=135.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++... ........+|++.|||   |    |++.+
T Consensus       106 ~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~a---P----E~~~~  175 (324)
T cd05589         106 YAACVVLGLQYLHENKIVYRDLKLDNLLLDTEG---FVKIADFGLCKEGMGFGDRTSTFCGTPEFLA---P----EVLTE  175 (324)
T ss_pred             HHHHHHHHHHHHHhCCeEecCCCHHHeEECCCC---cEEeCcccCCccCCCCCCcccccccCccccC---H----hHhcC
Confidence            478999999999998     7899999998853   49999999887542 2334456789999999   9    87766


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. +.+..+....+.   .....+|..++.++.++|++||..||.+||+....++
T Consensus       176 ~~~~~~~DiwslG~il~el~~G~~pf~-~~~~~~~~~~i~---~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~  251 (324)
T cd05589         176 TSYTRAVDWWGLGVLIYEMLVGESPFP-GDDEEEVFDSIV---NDEVRYPRFLSREAISIMRRLLRRNPERRLGSGEKDA  251 (324)
T ss_pred             CCCCcccchhhHHHHHHHHHhCCCCCC-CCCHHHHHHHHH---hCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCH
Confidence            55543              89999999 888888888887   2367788889999999999999999999998877789


Q ss_pred             hhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         150 VDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       150 ~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      .+++.||||++++|..+..+.+.+|+.|...+..|
T Consensus       252 ~~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~d  286 (324)
T cd05589         252 EDVKKQPFFRDINWDDLLARKIKPPFVPTIKGPED  286 (324)
T ss_pred             HHHhhCCCcCCCCHHHHHhCCCCcCccCCCCCcch
Confidence            99999999999999999888889999888766544

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>KOG0581|consensus

Probab=99.92  E-value=5.9e-25  Score=175.66  Aligned_cols=133  Identities=16%  Similarity=0.298  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHhh-c-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQ-A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~-~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      +.+|+.||.|||. .     ||||.|+|+++  +|. +||+|||.++.+... ...+++||..|||   |    |.+.+.
T Consensus       184 a~~VL~GL~YLh~~~~IIHRDIKPsNlLvNs--kGe-VKicDFGVS~~lvnS-~a~tfvGT~~YMs---P----ERi~g~  252 (364)
T KOG0581|consen  184 ARAVLRGLSYLHEERKIIHRDIKPSNLLVNS--KGE-VKICDFGVSGILVNS-IANTFVGTSAYMS---P----ERISGE  252 (364)
T ss_pred             HHHHHHHHHHHhhccCeeeccCCHHHeeecc--CCC-EEeccccccHHhhhh-hcccccccccccC---h----hhhcCC
Confidence            7899999999996 3     99999999999  454 999999999877655 7789999999999   9    999988


Q ss_pred             Ccce--------------eccCCCCCCCC-----ChHHHHHHHHhcCCCccCCCCC-CCHHHHHHHHHHhhcCcCcccCC
Q psy3184          85 GIDN--------------IFSRPPFCVMN-----DPMQTYNMIINVGIDKIPFPKH-VTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~-----~~~~~~~~i~~~~~~~~~~p~~-~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      .|+.              ..|+.||. ..     ++.+++..|..  ..++..|.. +|+++++||..||++||.+|+  
T Consensus       253 ~Ys~~sDIWSLGLsllE~a~GrfP~~-~~~~~~~~~~~Ll~~Iv~--~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~--  327 (364)
T KOG0581|consen  253 SYSVKSDIWSLGLSLLELAIGRFPYP-PPNPPYLDIFELLCAIVD--EPPPRLPEGEFSPEFRSFVSCCLRKDPSERP--  327 (364)
T ss_pred             cCCcccceecccHHHHHHhhCCCCCC-CcCCCCCCHHHHHHHHhc--CCCCCCCcccCCHHHHHHHHHHhcCCcccCC--
Confidence            8876              89999997 53     67788888983  368888986 999999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~  162 (185)
                         ++.+++.|||++...
T Consensus       328 ---s~~qLl~Hpfi~~~~  342 (364)
T KOG0581|consen  328 ---SAKQLLQHPFIKKFE  342 (364)
T ss_pred             ---CHHHHhcCHHHhhcc
Confidence               669999999997543

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.92  E-value=4.8e-24  Score=172.80  Aligned_cols=160  Identities=24%  Similarity=0.449  Sum_probs=134.5

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.... .......+||+.|+|   |    |++.
T Consensus       105 ~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  174 (324)
T cd05587         105 FYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEG---HIKIADFGMCKENIFGGKTTRTFCGTPDYIA---P----EIIA  174 (324)
T ss_pred             HHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCC---CEEEeecCcceecCCCCCceeeecCCccccC---h----hhhc
Confidence            3578999999999998     7999999998853   399999999875432 233446789999999   9    8877


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..|+.              ++|..||. +.+..+.+..+.   .....+|..++.++.+++++||..||.+|++.+...
T Consensus       175 ~~~~~~~~DiwslGvil~elltG~~pf~-~~~~~~~~~~i~---~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~  250 (324)
T cd05587         175 YQPYGKSVDWWAFGVLLYEMLAGQPPFD-GEDEDELFQSIM---EHNVSYPKSLSKEAVSICKGLLTKHPAKRLGCGPTG  250 (324)
T ss_pred             CCCCCcccchhhhHHHHHHHHhCCCCCC-CCCHHHHHHHHH---cCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCC
Confidence            665543              88999999 888888888887   346788889999999999999999999999876667


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      .++++.||||+.++|..+..+.+.+|+.|...+.
T Consensus       251 ~~~~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (324)
T cd05587         251 ERDIREHAFFRRIDWEKLERREIQPPFKPKVKGR  284 (324)
T ss_pred             HHHHhcCCCcCCCCHHHHHhCCCCCCccCcCCCc
Confidence            7899999999999999999888888888877543

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.91  E-value=4.2e-24  Score=173.06  Aligned_cols=158  Identities=23%  Similarity=0.429  Sum_probs=134.5

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.... .......+||+.|+|   |    |++.
T Consensus       105 ~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~---~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  174 (323)
T cd05616         105 FYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEG---HIKIADFGMCKENMWDGVTTKTFCGTPDYIA---P----EIIA  174 (323)
T ss_pred             HHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCC---cEEEccCCCceecCCCCCccccCCCChhhcC---H----HHhc
Confidence            3578999999999997     8999999998863   399999999875432 334456789999999   9    8877


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ...|+.              ++|..||. +.+...+...+.   .....+|..++.++.+++.+||.+||.+|++.....
T Consensus       175 ~~~~~~~~DiwSlGvil~elltg~~Pf~-~~~~~~~~~~i~---~~~~~~p~~~s~~~~~li~~~l~~~p~~R~~~~~~~  250 (323)
T cd05616         175 YQPYGKSVDWWAFGVLLYEMLAGQAPFE-GEDEDELFQSIM---EHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEG  250 (323)
T ss_pred             CCCCCCccchhchhHHHHHHHhCCCCCC-CCCHHHHHHHHH---hCCCCCCCcCCHHHHHHHHHHcccCHHhcCCCCCCC
Confidence            665554              88999999 888888888888   346788889999999999999999999999876667


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS  180 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~  180 (185)
                      ..+++.||||+.++|..+..+.+.+|+.|...
T Consensus       251 ~~~i~~h~~~~~~~~~~~~~~~~~~~~~~~~~  282 (323)
T cd05616         251 ERDIKEHAFFRYIDWEKLERKEVQPPYKPKAC  282 (323)
T ss_pred             HHHHhcCCCcCCCCHHHHHhCCCCCCcCCcCC
Confidence            89999999999999999999999999988754

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.91  E-value=8.3e-24  Score=171.48  Aligned_cols=160  Identities=23%  Similarity=0.490  Sum_probs=132.8

Q ss_pred             cHHHHHHHHHHHhh-c-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQ-A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~-~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||+ .     ||||+||+++.+.   .++|+|||+++... ........+||+.|+|   |    |++.
T Consensus       100 ~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  169 (325)
T cd05594         100 YGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDG---HIKITDFGLCKEGIKDGATMKTFCGTPEYLA---P----EVLE  169 (325)
T ss_pred             HHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCC---CEEEecCCCCeecCCCCcccccccCCcccCC---H----HHHc
Confidence            46899999999997 4     8999999998853   39999999987543 2333445789999999   9    8876


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..|+.              ++|..||. +.+.......+.   .....+|..+++++.+||++||..||.+|++....+
T Consensus       170 ~~~~~~~~DiwslG~il~el~tG~~Pf~-~~~~~~~~~~i~---~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~  245 (325)
T cd05594         170 DNDYGRAVDWWGLGVVMYEMMCGRLPFY-NQDHEKLFELIL---MEEIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDD  245 (325)
T ss_pred             cCCCCCccccccccceeeeeccCCCCCC-CCCHHHHHHHHh---cCCCCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCC
Confidence            655543              88999998 888888877777   347788889999999999999999999999765668


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                      +.+++.||||.+..|.......+.||+.|...+..
T Consensus       246 ~~~il~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (325)
T cd05594         246 AKEIMQHKFFAGIVWQDVYEKKLVPPFKPQVTSET  280 (325)
T ss_pred             HHHHhcCCCcCCCCHHHHHhCCCCCCcCCcCCCcc
Confidence            89999999999999999988888888887776554

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.91  E-value=8.1e-24  Score=171.25  Aligned_cols=160  Identities=23%  Similarity=0.429  Sum_probs=133.3

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||.|||++     ||||+||+++.+.   .++|+|||.+..... .......+||+.|+|   |    |++.
T Consensus       100 ~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  169 (321)
T cd05591         100 FYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEG---HCKLADFGMCKEGILNGVTTTTFCGTPDYIA---P----EILQ  169 (321)
T ss_pred             HHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCC---CEEEeecccceecccCCccccccccCccccC---H----HHHc
Confidence            3578999999999997     7999999998853   399999999875432 333445789999999   9    8776


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC--
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR--  146 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~--  146 (185)
                      ...|+.              ++|..||. +.+....+..+.   .....+|..++.++.++|++||..||.+|+++..  
T Consensus       170 ~~~~~~~~DvwslG~il~el~tg~~Pf~-~~~~~~~~~~i~---~~~~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~  245 (321)
T cd05591         170 ELEYGPSVDWWALGVLMYEMMAGQPPFE-ADNEDDLFESIL---HDDVLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQ  245 (321)
T ss_pred             CCCCCCccceechhHHHHHHhcCCCCCC-CCCHHHHHHHHH---cCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCC
Confidence            655543              88999999 888888888888   3467788889999999999999999999997643  


Q ss_pred             CChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      .++++++.||||.+.+|..+......+||.|.....
T Consensus       246 ~~~~~~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (321)
T cd05591         246 GGEDAIKQHPFFKEIDWVLLEQRKIKPPFKPKIKTK  281 (321)
T ss_pred             CCHHHHhcCCccCCCCHHHHHhCCCCCCCCCCCCCc
Confidence            278999999999999999999988899998877543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG0583|consensus

Probab=99.91  E-value=3e-24  Score=177.09  Aligned_cols=137  Identities=23%  Similarity=0.418  Sum_probs=123.0

Q ss_pred             hhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe-ecCcccccccCCccccccCCCccccc
Q psy3184           6 LKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI-KDGKILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         6 ~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~-~~~~~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .++....||+.||+|||++     ||||+|++++.+. + ++||+|||++... ..+....+.|||+.|+|   |    |
T Consensus       121 ~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~-~-~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~a---P----E  191 (370)
T KOG0583|consen  121 EARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNE-G-NLKLSDFGLSAISPGEDGLLKTFCGSPAYAA---P----E  191 (370)
T ss_pred             HHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCC-C-CEEEeccccccccCCCCCcccCCCCCcccCC---H----H
Confidence            3455678999999999998     8999999999973 3 6999999999988 46677889999999999   9    9


Q ss_pred             chhccC-cce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCC-CHHHHHHHHHHhhcCcCccc
Q psy3184          80 MIINVG-IDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHV-TRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        80 ~~~~~~-~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~-s~~~~~li~~~l~~dp~~R~  142 (185)
                      ++.+.. |+.               ++|..||. ..+...++.+|. .  ..+.+|..+ |+++++|+.+||..||.+|+
T Consensus       192 vl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~-d~~~~~l~~ki~-~--~~~~~p~~~~S~~~~~Li~~mL~~~P~~R~  267 (370)
T KOG0583|consen  192 VLSGKGTYSGKAADVWSLGVILYVLLCGRLPFD-DSNVPNLYRKIR-K--GEFKIPSYLLSPEARSLIEKMLVPDPSTRI  267 (370)
T ss_pred             HhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCC-CccHHHHHHHHh-c--CCccCCCCcCCHHHHHHHHHHcCCCcccCC
Confidence            999887 875               99999999 888899999988 3  489999999 99999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCC
Q psy3184         143 GYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~  160 (185)
                           ++.+++.||||+.
T Consensus       268 -----t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  268 -----TLLEILEHPWFQK  280 (370)
T ss_pred             -----CHHHHhhChhhcc
Confidence                 6699999999986

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.91  E-value=9.3e-24  Score=171.20  Aligned_cols=162  Identities=21%  Similarity=0.473  Sum_probs=134.3

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.... .......+||+.|+|   |    |++.
T Consensus        99 ~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  168 (323)
T cd05595          99 FYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDG---HIKITDFGLCKEGISDGATMKTFCGTPEYLA---P----EVLE  168 (323)
T ss_pred             HHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCC---CEEecccHHhccccCCCCccccccCCcCcCC---c----cccc
Confidence            3468999999999998     7999999998853   399999998875322 233345789999999   9    8776


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..|+.              ++|..||. +.+.......+.   .....+|..+++++++||++||..||.+|++....+
T Consensus       169 ~~~~~~~~DiwSlGvil~ell~g~~Pf~-~~~~~~~~~~~~---~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~  244 (323)
T cd05595         169 DNDYGRAVDWWGLGVVMYEMMCGRLPFY-NQDHERLFELIL---MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSD  244 (323)
T ss_pred             CCCCCchhchhhhHHHHHHHHhCCCCCC-CCCHHHHHHHHh---cCCCCCCCCCCHHHHHHHHHHccCCHHHhCCCCCCC
Confidence            655543              88999998 888788777777   346778889999999999999999999999766678


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      +.+++.|+||.+.+|..+....+.||+.|...++.+
T Consensus       245 ~~~~l~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (323)
T cd05595         245 AKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVD  280 (323)
T ss_pred             HHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCChhh
Confidence            899999999999999999888888888888776543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=1.2e-23  Score=169.54  Aligned_cols=157  Identities=24%  Similarity=0.493  Sum_probs=131.2

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.... .......+||+.|+|   |    |++.
T Consensus        97 ~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  166 (312)
T cd05585          97 FYTAELLCALENLHKFNVIYRDLKPENILLDYQG---HIALCDFGLCKLNMKDDDKTNTFCGTPEYLA---P----ELLL  166 (312)
T ss_pred             HHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCC---cEEEEECcccccCccCCCccccccCCcccCC---H----HHHc
Confidence            3467999999999997     7999999998753   499999999875432 233446789999999   9    8877


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..|+.              ++|..||. +.+..+.+..+.   ...+.+|..+++++++||.+||..||.+|++.  .+
T Consensus       167 ~~~~~~~~DvwslGvil~el~tg~~pf~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~L~~dp~~R~~~--~~  240 (312)
T cd05585         167 GHGYTKAVDWWTLGVLLYEMLTGLPPFY-DENVNEMYRKIL---QEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGY--NG  240 (312)
T ss_pred             CCCCCCccceechhHHHHHHHhCCCCcC-CCCHHHHHHHHH---cCCCCCCCcCCHHHHHHHHHHcCCCHHHcCCC--CC
Confidence            665554              89999999 888888888887   34788899999999999999999999999964  36


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASI  181 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~  181 (185)
                      +.+++.||||+..+|..+..+...+|+.|...+
T Consensus       241 ~~e~l~hp~~~~~~~~~~~~~~~~~~~~~~~~~  273 (312)
T cd05585         241 AQEIKNHPFFSQLSWKKLLMKGIQPPFKPAVSS  273 (312)
T ss_pred             HHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCC
Confidence            799999999999999999888888888877654

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0599|consensus

Probab=99.91  E-value=1.5e-24  Score=168.21  Aligned_cols=141  Identities=23%  Similarity=0.360  Sum_probs=116.5

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +-...|+++|++|||.+     ||||+|||++.+.   +++++|||++..+..+......||||+|+|   ||.+.....
T Consensus       126 R~iMrqlfegVeylHa~~IVHRDLKpENILlddn~---~i~isDFGFa~~l~~GekLrelCGTPgYLA---PEtikC~m~  199 (411)
T KOG0599|consen  126 RRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNM---NIKISDFGFACQLEPGEKLRELCGTPGYLA---PETIKCSMY  199 (411)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcccChhheeecccc---ceEEeccceeeccCCchhHHHhcCCCcccC---hhheeeecc
Confidence            34478999999999987     8999999999864   699999999999999999999999999999   943332222


Q ss_pred             --ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC--CCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 --NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 --~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~--~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                        ..+|+.              +.|.+||. .....-++.+|. +|...+.-|+  .+|.+++|||.+||+.||.+|+  
T Consensus       200 e~~pGYs~EVD~Wa~GVImyTLLaGcpPFw-HRkQmlMLR~Im-eGkyqF~speWadis~~~KdLIsrlLqVdp~~Ri--  275 (411)
T KOG0599|consen  200 ENHPGYSKEVDEWACGVIMYTLLAGCPPFW-HRKQMLMLRMIM-EGKYQFRSPEWADISATVKDLISRLLQVDPTKRI--  275 (411)
T ss_pred             cCCCCccchhhHHHHHHHHHHHHcCCCchh-HHHHHHHHHHHH-hcccccCCcchhhccccHHHHHHHHHeeCchhcc--
Confidence              134554              89999999 777777788898 6755555553  4899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~  161 (185)
                         +++++|.||||..+
T Consensus       276 ---take~LaHpff~q~  289 (411)
T KOG0599|consen  276 ---TAKEALAHPFFIQI  289 (411)
T ss_pred             ---cHHHHhcChHHHHH
Confidence               66999999999543

>KOG0608|consensus

Probab=99.90  E-value=2.7e-24  Score=181.93  Aligned_cols=164  Identities=28%  Similarity=0.503  Sum_probs=136.2

Q ss_pred             hhhhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec---------C-------------
Q psy3184           4 DFLKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD---------G-------------   56 (185)
Q Consensus         4 ~~~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~---------~-------------   56 (185)
                      +-|++|+-+++.+||+++|.+     ||||+||||+++  |+ |||+|||++..+-.         +             
T Consensus       728 E~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrd--GH-IKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e  804 (1034)
T KOG0608|consen  728 EDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRD--GH-IKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPE  804 (1034)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccceecccCccceEEccC--Cc-eeeeeccccccceeccccccccCCCccccccCCCchh
Confidence            468999999999999999998     899999999997  44 99999999853321         0             


Q ss_pred             -----c----------------ccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCCCCCh
Q psy3184          57 -----K----------------ILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDP  101 (185)
Q Consensus        57 -----~----------------~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~  101 (185)
                           .                ...+++||+.|+|   |    |++...+|+.              +.|++||. +.++
T Consensus       805 ~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyia---p----evl~r~g~~q~cdwws~gvil~em~~g~~pf~-~~tp  876 (1034)
T KOG0608|consen  805 WADISKCLKVLERRAMRQHQRILAHSLVGTPNYIA---P----EVLARTGYTQLCDWWSVGVILYEMLVGQPPFL-ADTP  876 (1034)
T ss_pred             hccccccchHHHHHHHhhhhhhhhhhhcCCCcccC---h----HHhcccCccccchhhHhhHHHHHHhhCCCCcc-CCCC
Confidence                 0                1235689999999   9    9999888876              89999999 8888


Q ss_pred             HHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCC
Q psy3184         102 MQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVA  179 (185)
Q Consensus       102 ~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~  179 (185)
                      -++..+|+ +|...+.+|  ..+|.++.++|.+++. +++.|++.  .++++++.||||+++||..|..+  ..||+|++
T Consensus       877 ~~tq~kv~-nw~~~l~~~~~~~ls~e~~~li~kLc~-sad~RLGk--ng~d~vKaHpfFkgIDfsslRkq--~ApYIP~I  950 (1034)
T KOG0608|consen  877 GETQYKVI-NWRNFLHIPYQGNLSKEALDLIQKLCC-SADSRLGK--NGADQVKAHPFFKGIDFSSLRKQ--RAPYIPRI  950 (1034)
T ss_pred             Ccceeeee-ehhhccccccccccCHHHHHHHHHHhc-Chhhhhcc--cchhhhhcCccccccchHhhhhc--cCCcCccc
Confidence            88887887 676666777  5699999999999765 79999975  46677999999999999997776  67899999


Q ss_pred             CCCCC
Q psy3184         180 SILRD  184 (185)
Q Consensus       180 ~~~~~  184 (185)
                      .-+.|
T Consensus       951 tHptD  955 (1034)
T KOG0608|consen  951 THPTD  955 (1034)
T ss_pred             cCCCc
Confidence            87665

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.90  E-value=2.2e-23  Score=168.98  Aligned_cols=157  Identities=25%  Similarity=0.484  Sum_probs=132.8

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.... +......+||+.|+|   |    |++.
T Consensus       105 ~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~---~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  174 (323)
T cd05615         105 FYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEG---HIKIADFGMCKEHMVDGVTTRTFCGTPDYIA---P----EIIA  174 (323)
T ss_pred             HHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCC---CEEEeccccccccCCCCccccCccCCccccC---H----HHHc
Confidence            4578999999999997     7999999999853   399999999875432 233446789999999   9    8877


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ...++.              ++|.+||. +.+...+...+.   .....+|..++.++.+++.+||.++|.+|++.....
T Consensus       175 ~~~~~~~~DiwslGvil~elltG~~pf~-~~~~~~~~~~i~---~~~~~~p~~~~~~~~~li~~~l~~~p~~R~~~~~~~  250 (323)
T cd05615         175 YQPYGKSVDWWAYGVLLYEMLAGQPPFD-GEDEDELFQSIM---EHNVSYPKSLSKEAVSICKGLMTKHPSKRLGCGPEG  250 (323)
T ss_pred             CCCCCCccchhhhHHHHHHHHhCCCCCC-CCCHHHHHHHHH---hCCCCCCccCCHHHHHHHHHHcccCHhhCCCCCCCC
Confidence            655554              88999999 888888888887   346788889999999999999999999999876667


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVA  179 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~  179 (185)
                      .++++.||||+.++|..+..+.+.+|+.|..
T Consensus       251 ~~~i~~h~~f~~~~~~~~~~~~~~~~~~~~~  281 (323)
T cd05615         251 ERDIREHAFFRRIDWDKLENREIQPPFKPKV  281 (323)
T ss_pred             HHHHhcCcccCCCCHHHHhcCCCCcCccCcc
Confidence            8999999999999999999998899998764

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.90  E-value=3.1e-23  Score=167.95  Aligned_cols=158  Identities=22%  Similarity=0.464  Sum_probs=130.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.... .......+||+.|+|   |    |++.+
T Consensus       101 ~~~qi~~~l~~lH~~givH~dikp~NIll~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~~  170 (323)
T cd05575         101 YAAEIASALGYLHSLNIIYRDLKPENILLDSQG---HVVLTDFGLCKEGIEHSKTTSTFCGTPEYLA---P----EVLRK  170 (323)
T ss_pred             HHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCC---cEEEeccCCCcccccCCCccccccCChhhcC---h----hhhcC
Confidence            478999999999998     8999999998853   399999999875422 334445789999999   9    87766


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..|+.              ++|..||. +.+..+.+..+. .  ....++..++.++.++|++||..||.+|++. +..+
T Consensus       171 ~~~~~~~DvwslG~il~ell~g~~pf~-~~~~~~~~~~i~-~--~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~-~~~~  245 (323)
T cd05575         171 QPYDRTVDWWCLGAVLYEMLYGLPPFY-SRDTAEMYDNIL-N--KPLRLKPNISVSARHLLEGLLQKDRTKRLGA-KDDF  245 (323)
T ss_pred             CCCCccccccccchhhhhhhcCCCCCC-CCCHHHHHHHHH-c--CCCCCCCCCCHHHHHHHHHHhhcCHHhCCCC-CCCH
Confidence            55543              88999999 888888888887 3  3667777889999999999999999999976 3456


Q ss_pred             hhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         150 VDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       150 ~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      .+++.||||.+.+|..+....+.+|+.|.....
T Consensus       246 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (323)
T cd05575         246 LEIKNHVFFSSINWDDLVNKKITPPFNPNVSGP  278 (323)
T ss_pred             HHHHcCCCcCCCCHHHHhhccCCCCcCCCCCCc
Confidence            799999999999999999888889988876654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.90  E-value=3.1e-23  Score=167.77  Aligned_cols=160  Identities=22%  Similarity=0.429  Sum_probs=133.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||+++... ........+|++.|+|   |    |++.+
T Consensus       101 ~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~a---P----E~~~~  170 (318)
T cd05570         101 YAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEG---HIKIADFGMCKEGILGGVTTSTFCGTPDYIA---P----EILSY  170 (318)
T ss_pred             HHHHHHHHHHHHHhCCeEccCCCHHHeEECCCC---cEEecccCCCeecCcCCCcccceecCccccC---H----HHhcC
Confidence            467999999999998     7899999998853   49999999987532 2333445689999999   9    88776


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..|+.              ++|..||. +.+.......+.   ...+.+|..++.++.+||++||..||.+|++.+....
T Consensus       171 ~~~~~~~DiwslGvil~~l~~G~~pf~-~~~~~~~~~~i~---~~~~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~  246 (318)
T cd05570         171 QPYGPAVDWWALGVLLYEMLAGQSPFE-GDDEDELFQSIL---EDEVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGE  246 (318)
T ss_pred             CCCCcchhhhhHHHHHHHHhhCCCCCC-CCCHHHHHHHHH---cCCCCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCH
Confidence            65554              88999998 888888888887   3467788889999999999999999999996655556


Q ss_pred             hhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         150 VDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       150 ~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                      .+++.||||+..+|..+....+.||+.|.+.+..
T Consensus       247 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (318)
T cd05570         247 QDIKGHPFFREIDWDKLERKEIKPPFKPKIKGRF  280 (318)
T ss_pred             HHHhcCCCcCCCCHHHHHhCCCCCCcCCCCCCcc
Confidence            9999999999999999988888999988876643

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.90  E-value=2.8e-23  Score=167.98  Aligned_cols=157  Identities=19%  Similarity=0.436  Sum_probs=129.8

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++..... ......+||+.|+|   |    |++.
T Consensus       100 ~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  169 (316)
T cd05620         100 FYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDG---HIKIADFGMCKENVFGDNRASTFCGTPDYIA---P----EILQ  169 (316)
T ss_pred             HHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCC---CEEeCccCCCeecccCCCceeccCCCcCccC---H----HHHc
Confidence            3467999999999998     7999999998853   3999999998754332 33456789999999   9    8877


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..|+.              ++|..||. +.+..++...+.   ...+.+|..++.++++||++||..||.+|++.    
T Consensus       170 ~~~~~~~~DiwslGvil~el~~g~~Pf~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~----  241 (316)
T cd05620         170 GLKYTFSVDWWSFGVLLYEMLIGQSPFH-GDDEDELFESIR---VDTPHYPRWITKESKDILEKLFERDPTRRLGV----  241 (316)
T ss_pred             CCCCCcccchhhhHHHHHHHHhCCCCCC-CCCHHHHHHHHH---hCCCCCCCCCCHHHHHHHHHHccCCHHHcCCC----
Confidence            665554              88999999 888888888777   34677888899999999999999999999943    


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                      .+++++||||+.++|..+....+.+|+.|....+.
T Consensus       242 ~~~~~~h~~f~~~~~~~~~~~~~~~~~~~~~~~~~  276 (316)
T cd05620         242 VGNIRGHPFFKTINWTALEKRELDPPFKPKVKSPS  276 (316)
T ss_pred             hHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCCcc
Confidence            25899999999999999988888899888776543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.90  E-value=5.5e-23  Score=166.61  Aligned_cols=160  Identities=23%  Similarity=0.467  Sum_probs=132.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...||+.||+|||++     ||||+||+++.+.   .++|+|||+++.... .......+||+.|+|   |    |++..
T Consensus       105 ~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~~  174 (323)
T cd05584         105 YLSEISLALEHLHQQGIIYRDLKPENILLDAQG---HVKLTDFGLCKESIHEGTVTHTFCGTIEYMA---P----EILMR  174 (323)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHeEECCCC---CEEEeeCcCCeecccCCCcccccCCCccccC---h----hhccC
Confidence            467999999999998     8999999998753   399999999875433 333445789999999   9    77665


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. +.+.......+. .  ....+|..+++++.+||++||..||.+|++....++
T Consensus       175 ~~~~~~~DiwslG~il~ell~G~~pf~-~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~  250 (323)
T cd05584         175 SGHGKAVDWWSLGALMYDMLTGAPPFT-AENRKKTIDKIL-K--GKLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDA  250 (323)
T ss_pred             CCCCCcceecccHHHHHHHhcCCCCCC-CCCHHHHHHHHH-c--CCCCCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCH
Confidence            44433              89999999 888888888887 3  367788889999999999999999999998777788


Q ss_pred             hhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         150 VDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       150 ~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                      ++++.||||+...|..+....+.+|+.+...+..
T Consensus       251 ~~l~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (323)
T cd05584         251 AEVQSHPFFRHVNWDDLLARKVEPPFKPLLQSEE  284 (323)
T ss_pred             HHHhcCCCcCCCCHHHHhcCCCCCCcCCCCCCcc
Confidence            9999999999999999988888888877766544

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.90  E-value=5.3e-23  Score=166.21  Aligned_cols=157  Identities=26%  Similarity=0.468  Sum_probs=130.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.+...... ......+||+.|+|   |    |++..
T Consensus       103 ~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~a---P----E~~~~  172 (318)
T cd05582         103 YLAELALALDHLHSLGIIYRDLKPENILLDEEG---HIKLTDFGLSKESIDHEKKAYSFCGTVEYMA---P----EVVNR  172 (318)
T ss_pred             HHHHHHHHHHHHHHCCEecCCCCHHHeEECCCC---cEEEeeccCCcccCCCCCceecccCChhhcC---H----HHHcC
Confidence            468999999999998     7999999998753   3999999998765433 34456789999999   9    87765


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. +.+.......+.   .....+|..+++++.+||++||..||.+|+++....+
T Consensus       173 ~~~~~~~DiwslG~il~el~tg~~p~~-~~~~~~~~~~i~---~~~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~~~~  248 (318)
T cd05582         173 RGHTQSADWWSFGVLMFEMLTGSLPFQ-GKDRKETMTMIL---KAKLGMPQFLSPEAQSLLRALFKRNPANRLGAGPDGV  248 (318)
T ss_pred             CCCCCccceeccceEeeeeccCCCCCC-CCCHHHHHHHHH---cCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCH
Confidence            54443              88999999 888888888877   3467788889999999999999999999998766668


Q ss_pred             hhhhcCCCCCCCChhhhhcccCCCCccCCCC
Q psy3184         150 VDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS  180 (185)
Q Consensus       150 ~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~  180 (185)
                      ++++.||||+.++|..+......||+.|...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (318)
T cd05582         249 EEIKRHPFFSTIDWNKLYRREIKPPFKPAVG  279 (318)
T ss_pred             HHHhCCCCcCCCCHHHHHhcCCCCCcCCCCC
Confidence            9999999999999999988888888776554

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.90  E-value=5.5e-23  Score=166.20  Aligned_cols=157  Identities=20%  Similarity=0.459  Sum_probs=130.4

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||.|||++     ||||+||+++.+.   .++|+|||+++.... .......+||+.|+|   |    |++.
T Consensus       100 ~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~---~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~a---P----E~~~  169 (316)
T cd05592         100 FYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDG---HIKIADFGMCKENMNGEGKASTFCGTPDYIA---P----EILK  169 (316)
T ss_pred             HHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCC---CEEEccCcCCeECCCCCCccccccCCccccC---H----HHHc
Confidence            3478999999999998     7999999998853   399999999876533 233445789999999   9    8877


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..|+.              ++|..||. +.+..+++..+.   ...+.+|..++.++.+||.+||..||.+|++.    
T Consensus       170 ~~~~~~~~DvwslG~il~ell~G~~Pf~-~~~~~~~~~~i~---~~~~~~~~~~~~~~~~ll~~~l~~~P~~R~~~----  241 (316)
T cd05592         170 GQKYNESVDWWSFGVLLYEMLIGQSPFH-GEDEDELFDSIL---NDRPHFPRWISKEAKDCLSKLFERDPTKRLGV----  241 (316)
T ss_pred             CCCCCCcccchhHHHHHHHHHhCCCCCC-CCCHHHHHHHHH---cCCCCCCCCCCHHHHHHHHHHccCCHHHcCCC----
Confidence            655543              88999999 888888888877   34677888899999999999999999999944    


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                      .++++.||||+.++|..+..+...|||.|...+..
T Consensus       242 ~~~l~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (316)
T cd05592         242 DGDIRQHPFFRGIDWERLEKREIPPPFKPKVKSPS  276 (316)
T ss_pred             hHHHHcCcccCCCCHHHHHhCCCCCCcCCCCCCcc
Confidence            35899999999999999988888999988776543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.90  E-value=6.6e-23  Score=166.19  Aligned_cols=159  Identities=19%  Similarity=0.420  Sum_probs=131.1

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++... ........+||+.|+|   |    |++.
T Consensus       100 ~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~---~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  169 (325)
T cd05604         100 FYAAEIASALGYLHSINIVYRDLKPENILLDSQG---HVVLTDFGLCKEGIAQSDTTTTFCGTPEYLA---P----EVIR  169 (325)
T ss_pred             HHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCC---CEEEeecCCcccCCCCCCCcccccCChhhCC---H----HHHc
Confidence            3578999999999998     7899999998853   39999999987532 2333456789999999   9    8877


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..|+.              ++|..||. +.+..+++..+. .  ....++...+.++.++|++||..+|.+|++. +..
T Consensus       170 ~~~~~~~~DvwslG~il~el~~G~~pf~-~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~ll~~ll~~~p~~R~~~-~~~  244 (325)
T cd05604         170 KQPYDNTVDWWCLGAVLYEMLYGLPPFY-CRDVAEMYDNIL-H--KPLVLRPGASLTAWSILEELLEKDRQRRLGA-KED  244 (325)
T ss_pred             CCCCCCcCccccccceehhhhcCCCCCC-CCCHHHHHHHHH-c--CCccCCCCCCHHHHHHHHHHhccCHHhcCCC-CCC
Confidence            655543              88999999 888888888887 2  3556666789999999999999999999976 456


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      +.+++.||||.+.+|..+..+.+++|+.|...+.
T Consensus       245 ~~~i~~h~~f~~~~~~~~~~~~~~~~~~~~~~~~  278 (325)
T cd05604         245 FLEIQEHPFFESLSWTDLEQKKIPPPFNPNVEGP  278 (325)
T ss_pred             HHHHhcCCCcCCCCHHHHHhCCCCCCcCCcCCCc
Confidence            7899999999999999999888889988876543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.90  E-value=6.7e-23  Score=165.80  Aligned_cols=158  Identities=21%  Similarity=0.433  Sum_probs=130.6

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.... .......+||+.|+|   |    |++.
T Consensus       100 ~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  169 (316)
T cd05619         100 FYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDG---HIKIADFGMCKENMLGDAKTCTFCGTPDYIA---P----EILL  169 (316)
T ss_pred             HHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCC---CEEEccCCcceECCCCCCceeeecCCccccC---H----HHHc
Confidence            3578999999999998     7899999998853   399999999875432 233456789999999   9    8877


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..|+.              ++|..||. +.+..+++..+.   ...+.+|..++.++++||.+||..||.+|++.    
T Consensus       170 ~~~~~~~~DvwslG~il~el~~G~~pf~-~~~~~~~~~~i~---~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~----  241 (316)
T cd05619         170 GQKYNTSVDWWSFGVLLYEMLIGQSPFH-GHDEEELFQSIR---MDNPCYPRWLTREAKDILVKLFVREPERRLGV----  241 (316)
T ss_pred             CCCCCchhhhhhHHHHHHHHHhCCCCCC-CCCHHHHHHHHH---hCCCCCCccCCHHHHHHHHHHhccCHhhcCCC----
Confidence            665554              88999999 888888887776   23567788899999999999999999999944    


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      .++++.||||+.++|..+......+|+.|...+..|
T Consensus       242 ~~~l~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (316)
T cd05619         242 KGDIRQHPFFREIDWSALEEREIEPPFKPKVKSAND  277 (316)
T ss_pred             hHHHHcCcccCCCCHHHHHhCCCCCCcCCCCCCccc
Confidence            138999999999999999888889999888776543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=8.3e-23  Score=165.85  Aligned_cols=160  Identities=24%  Similarity=0.478  Sum_probs=128.9

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.... .......+||+.|+|   |    |++.
T Consensus       100 ~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~a---P----E~~~  169 (330)
T cd05586         100 FYIAELVLALEHLHKYDIVYRDLKPENILLDATG---HIALCDFGLSKANLTDNKTTNTFCGTTEYLA---P----EVLL  169 (330)
T ss_pred             HHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCC---CEEEecCCcCcCCCCCCCCccCccCCccccC---H----HHHc
Confidence            3477999999999998     7999999998853   399999999875322 334456789999999   9    7765


Q ss_pred             cc-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC-CCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          83 NV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK-HVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        83 ~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~-~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .. .|+.              ++|..||. +.+..+.+..+. .+  ...+|. .+++++++||++||..||.+|++. .
T Consensus       170 ~~~~~~~~~DvwslGvil~elltG~~Pf~-~~~~~~~~~~i~-~~--~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~-~  244 (330)
T cd05586         170 DEKGYTKHVDFWSLGVLVFEMCCGWSPFY-AEDTQQMYRNIA-FG--KVRFPKNVLSDEGRQFVKGLLNRNPQHRLGA-H  244 (330)
T ss_pred             CCCCCCCccceeccccEEEEeccCCCCCC-CCCHHHHHHHHH-cC--CCCCCCccCCHHHHHHHHHHcCCCHHHCCCC-C
Confidence            32 2332              88999999 888888888887 33  556664 579999999999999999999965 4


Q ss_pred             CChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                      .+++++++||||+..+|..+..+.+.+|+.|...+..
T Consensus       245 ~~~~~ll~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (330)
T cd05586         245 RDAVELKEHPFFADIDWDLLSKKQITPPFKPIVDSDE  281 (330)
T ss_pred             CCHHHHhcCccccCCCHHHHHhCCCCCCccCCCCCCc
Confidence            4689999999999999999988888999988776443

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.89  E-value=5.7e-23  Score=163.17  Aligned_cols=155  Identities=26%  Similarity=0.512  Sum_probs=125.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||++     ||||+||+++.+  + .++++|||.+..+..+. ......||+.|+|   |    |++.+
T Consensus       102 ~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~--~-~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~a---P----E~~~~  171 (280)
T cd05608         102 YTAQIISGLEHLHQRRIIYRDLKPENVLLDND--G-NVRISDLGLAVELKDGQSKTKGYAGTPGFMA---P----ELLQG  171 (280)
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCHHHEEECCC--C-CEEEeeCccceecCCCCccccccCCCcCccC---H----HHhcC
Confidence            468999999999998     789999999874  3 39999999987664432 2345689999999   9    88776


Q ss_pred             cCcce--------------eccCCCCCCCCCh----HHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDP----MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~----~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      ..++.              ++|..||. ..+.    ......+.   .....+|..++.++.+++.+||..||.+|+++.
T Consensus       172 ~~~~~~~DvwslG~il~el~~g~~pf~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~  247 (280)
T cd05608         172 EEYDFSVDYFALGVTLYEMIAARGPFR-ARGEKVENKELKQRIL---NDSVTYPDKFSPASKSFCEALLAKDPEKRLGFR  247 (280)
T ss_pred             CCCCccccHHHHHHHHHHHHhCCCCCC-CCCcchhHHHHHHhhc---ccCCCCcccCCHHHHHHHHHHhcCCHHHhcCCC
Confidence            55554              88999997 4432    23333343   235677788999999999999999999999887


Q ss_pred             CCChhhhhcCCCCCCCChhhhhcccCCCCccCC
Q psy3184         146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPV  178 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~  178 (185)
                      ..+++++++||||+++.|..+.....++||.|.
T Consensus       248 ~~~~~~~l~h~~~~~~~~~~~~~~~~~~~~~~~  280 (280)
T cd05608         248 DGNCDGLRTHPLFRDLNWRQLEAGMLPPPFVPD  280 (280)
T ss_pred             CCCHHHHhcChhhhcCCHhHHhhccCCCCCCCC
Confidence            778999999999999999999888889999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.89  E-value=6.8e-23  Score=166.56  Aligned_cols=161  Identities=22%  Similarity=0.439  Sum_probs=126.7

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe-ecCcccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI-KDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~-~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ...+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.. ..+......+||+.|+|   |    |++
T Consensus        99 ~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~  168 (329)
T cd05588          99 RFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEG---HIKLTDYGMCKEGIRPGDTTSTFCGTPNYIA---P----EIL  168 (329)
T ss_pred             HHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCC---CEEECcCccccccccCCCccccccCCccccC---H----HHH
Confidence            34578999999999998     7999999998853   3999999998743 23344556789999999   9    887


Q ss_pred             hccCcce--------------eccCCCCCCCC---------ChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCc
Q psy3184          82 INVGIDN--------------IFSRPPFCVMN---------DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESP  138 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~---------~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp  138 (185)
                      .+..|+.              ++|..||. ..         ......+.+.   .....+|..++.++.++|++||..||
T Consensus       169 ~~~~~~~~~DiwslG~~l~el~~g~~Pf~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~li~~~L~~dP  244 (329)
T cd05588         169 RGEDYGFSVDWWALGVLMFEMMAGRSPFD-IVGMSDNPDQNTEDYLFQVIL---EKQIRIPRSLSVKASSVLKGFLNKDP  244 (329)
T ss_pred             cCCCCCCccceechHHHHHHHHHCCCCcc-cccccccccccchHHHHHHHH---cCCCCCCCCCCHHHHHHHHHHhccCH
Confidence            7665553              88999995 21         1123444555   34677888999999999999999999


Q ss_pred             CcccCCCC-CChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         139 AERLGYQR-GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       139 ~~R~~~~~-~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      .+|+++.. .++++++.||||..++|..+......||+.|.+.+.
T Consensus       245 ~~R~~~~~~~~~~~i~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (329)
T cd05588         245 KERLGCHPQTGFRDIKSHPFFRNIDWDLLEQKQVLPPYKPNIESD  289 (329)
T ss_pred             HHcCCCCCCCCHHHHhcCCCCCCCCHHHHHhCCCCCCccccCCCc
Confidence            99997421 357999999999999999998888888888777654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.89  E-value=9.2e-23  Score=165.64  Aligned_cols=162  Identities=24%  Similarity=0.455  Sum_probs=128.3

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ...+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++... ........+||+.|+|   |    |++
T Consensus        99 ~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~  168 (327)
T cd05617          99 RFYAAEICIALNFLHERGIIYRDLKLDNVLLDADG---HIKLTDYGMCKEGLGPGDTTSTFCGTPNYIA---P----EIL  168 (327)
T ss_pred             HHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCC---CEEEeccccceeccCCCCceecccCCcccCC---H----HHH
Confidence            34578999999999998     8999999998853   39999999987532 2344556789999999   9    887


Q ss_pred             hccCcce--------------eccCCCCCC------CCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcc
Q psy3184          82 INVGIDN--------------IFSRPPFCV------MNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~------~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R  141 (185)
                      .+..|+.              ++|..||..      ..........+.   .....+|..++..+.++|++||..||.+|
T Consensus       169 ~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~li~~~L~~dP~~R  245 (327)
T cd05617         169 RGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVIL---EKPIRIPRFLSVKASHVLKGFLNKDPKER  245 (327)
T ss_pred             CCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHH---hCCCCCCCCCCHHHHHHHHHHhccCHHHc
Confidence            7665553              889999951      112233445555   24677888999999999999999999999


Q ss_pred             cCCC-CCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         142 LGYQ-RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       142 ~~~~-~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      +++. ..++++++.||||++++|+.+....+.+||.|.....
T Consensus       246 ~~~~~~~~~~~i~~h~~f~~~~~~~~~~~~~~~~~~~~~~~~  287 (327)
T cd05617         246 LGCQPQTGFSDIKSHTFFRSIDWDLLEKKQVTPPFKPQITDD  287 (327)
T ss_pred             CCCCCCCCHHHHHcCCCCCCCCHHHHHhCCCCCCccCCCCCC
Confidence            9752 2357899999999999999999888999998887654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=1e-22  Score=162.13  Aligned_cols=155  Identities=21%  Similarity=0.375  Sum_probs=125.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.||+|||+.     ||+|+||+++.+  + .++++|||++.....+......+|++.|+|   |    |++...
T Consensus       107 ~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~--~-~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  176 (285)
T cd05605         107 YAAEITCGLEDLHRERIVYRDLKPENILLDDY--G-HIRISDLGLAVEIPEGETIRGRVGTVGYMA---P----EVVKNE  176 (285)
T ss_pred             HHHHHHHHHHHHHHCCcEecCCCHHHEEECCC--C-CEEEeeCCCceecCCCCccccccCCCCccC---c----HHhcCC
Confidence            478999999999998     789999999875  3 389999999987655444456689999999   9    877654


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHH----HHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTY----NMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~----~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .++.              ++|..||. +.+.....    ..+.   .....+|..++..+.+||.+||..||.+|+++..
T Consensus       177 ~~~~~~Diws~G~~l~el~~g~~pf~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~  252 (285)
T cd05605         177 RYTFSPDWWGLGCLIYEMIEGKSPFR-QRKEKVKREEVERRVK---EDQEEYSEKFSEAARSICRQLLTKDPGFRLGCRG  252 (285)
T ss_pred             CCCccccchhHHHHHHHHHHCCCCCC-CCchhhHHHHHHHHhh---hcccccCcccCHHHHHHHHHHccCCHHHhcCCCC
Confidence            4443              88999998 65543332    2233   2355677789999999999999999999998866


Q ss_pred             CChhhhhcCCCCCCCChhhhhcccCCCCccCC
Q psy3184         147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPV  178 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~  178 (185)
                      .++++++.||||...+|+.+.....+|||.|+
T Consensus       253 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (285)
T cd05605         253 EGAEEVKAHPFFRTANFKRLEAGMLEPPFCPD  284 (285)
T ss_pred             CCHHHHhcCcCccCCCHHHHhhCCCCCCCCCC
Confidence            78899999999999999999998899999885

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.89  E-value=1.1e-22  Score=164.80  Aligned_cols=159  Identities=21%  Similarity=0.455  Sum_probs=130.7

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++... ........+||+.|+|   |    |++.
T Consensus       100 ~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~---~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~a---P----E~~~  169 (325)
T cd05602         100 FYAAEIASALGYLHSLNIVYRDLKPENILLDSQG---HIVLTDFGLCKENIEHNGTTSTFCGTPEYLA---P----EVLH  169 (325)
T ss_pred             HHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCC---CEEEccCCCCcccccCCCCcccccCCccccC---H----HHHc
Confidence            3578999999999998     8999999998753   39999999987542 2334456789999999   9    8877


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..|+.              ++|.+||. +.+..+.+..+. .  ....++..++.++.++|.+||..||.+|++. .+.
T Consensus       170 ~~~~~~~~DiwslG~il~el~~g~~pf~-~~~~~~~~~~i~-~--~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~-~~~  244 (325)
T cd05602         170 KQPYDRTVDWWCLGAVLYEMLYGLPPFY-SRNTAEMYDNIL-N--KPLQLKPNITNSARHLLEGLLQKDRTKRLGA-KDD  244 (325)
T ss_pred             CCCCCCccccccccHHHHHHhcCCCCCC-CCCHHHHHHHHH-h--CCcCCCCCCCHHHHHHHHHHcccCHHHCCCC-CCC
Confidence            655543              89999999 888888888887 2  3566777899999999999999999999976 345


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      +.++++|+||...+|..+..+...+|+.|...++
T Consensus       245 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (325)
T cd05602         245 FMEIKNHIFFSPINWDDLINKKITPPFNPNVSGP  278 (325)
T ss_pred             HHHHhcCcccCCCCHHHHHhCCCCcCcCCCCCCc
Confidence            6699999999999999998888888887776544

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.89  E-value=1.1e-22  Score=165.35  Aligned_cols=162  Identities=22%  Similarity=0.446  Sum_probs=126.2

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ...+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++... .+......+||+.|+|   |    |++
T Consensus        99 ~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~---~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~a---P----E~~  168 (329)
T cd05618          99 RFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEG---HIKLTDYGMCKEGLRPGDTTSTFCGTPNYIA---P----EIL  168 (329)
T ss_pred             HHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCC---CEEEeeCCccccccCCCCccccccCCccccC---H----HHH
Confidence            34578999999999998     7999999998853   39999999987532 2333456789999999   9    887


Q ss_pred             hccCcce--------------eccCCCCCC---C-----CChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcC
Q psy3184          82 INVGIDN--------------IFSRPPFCV---M-----NDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~---~-----~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~  139 (185)
                      .+..|+.              ++|..||..   .     .....+...+.   .....+|..++.++.+||++||..||.
T Consensus       169 ~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~---~~~~~~p~~~~~~~~~ll~~~L~~dP~  245 (329)
T cd05618         169 RGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVIL---EKQIRIPRSLSVKAASVLKSFLNKDPK  245 (329)
T ss_pred             cCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHh---cCCCCCCCCCCHHHHHHHHHHhcCCHH
Confidence            7655543              899999951   0     11123444455   346778899999999999999999999


Q ss_pred             cccCCC-CCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         140 ERLGYQ-RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       140 ~R~~~~-~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      +|+++. ..++.++++||||++++|..+..+.+.||+.|...+.
T Consensus       246 ~R~~~~~~~~~~~i~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~  289 (329)
T cd05618         246 ERLGCHPQTGFADIQGHPFFRNVDWDLMEQKQVVPPFKPNISGE  289 (329)
T ss_pred             HcCCCCCCCCHHHHhcCCCCCCCCHHHHHcCCCCcCccCCCCCc
Confidence            999752 1246899999999999999999888889988876543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.89  E-value=2.4e-22  Score=163.20  Aligned_cols=159  Identities=22%  Similarity=0.420  Sum_probs=125.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--cccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ...||+.||+|||++     ||||+||+++.+.   .++|+|||++......  ......+||+.|||   |    |++.
T Consensus       110 ~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~---~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  179 (332)
T cd05614         110 YSGEIILALEHLHKLGIVYRDIKLENILLDSEG---HVVLTDFGLSKEFLSEEKERTYSFCGTIEYMA---P----EIIR  179 (332)
T ss_pred             HHHHHHHHHHHHHHCCcEecCCCHHHeEECCCC---CEEEeeCcCCccccccCCCccccccCCccccC---H----HHhc
Confidence            466999999999997     8999999998863   4999999998754332  23345789999999   9    7765


Q ss_pred             ccC-cce--------------eccCCCCCCCC----ChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          83 NVG-IDN--------------IFSRPPFCVMN----DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        83 ~~~-~~~--------------l~g~~Pf~~~~----~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                      +.. ++.              ++|..||. ..    ........+.   ...+.+|..++.+++++|.+||..||.+|++
T Consensus       180 ~~~~~~~~~DiwslG~il~elltg~~pf~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~  255 (332)
T cd05614         180 GKGGHGKAVDWWSLGILIFELLTGASPFT-LEGERNTQSEVSRRIL---KCDPPFPSFIGPEAQDLLHKLLRKDPKKRLG  255 (332)
T ss_pred             CCCCCCCccccccchhhhhhhhcCCCCCC-CCCCCCCHHHHHHHHh---cCCCCCCCCCCHHHHHHHHHHcCCCHHHcCC
Confidence            432 222              89999996 32    2233444454   2356778889999999999999999999998


Q ss_pred             CCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         144 YQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       144 ~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      ....+++++++||||++.+|..+....+.+|+.|.....
T Consensus       256 ~~~~~~~~~l~h~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (332)
T cd05614         256 AGPQGASEIKEHPFFKGLDWEALALRKVNPPFRPSIRNE  294 (332)
T ss_pred             CCCCCHHHHHcCCCcCCCCHHHHHhCCCCCCcCCCCCCc
Confidence            877789999999999999999998888889988876644

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.88  E-value=3.1e-22  Score=161.88  Aligned_cols=158  Identities=22%  Similarity=0.420  Sum_probs=129.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||+.     ||||+||+++.+.   .++|+|||+++... ........+||+.|+|   |    |++.+
T Consensus       101 ~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~~  170 (321)
T cd05603         101 YAAEVASAIGYLHSLNIIYRDLKPENILLDSQG---HVVLTDFGLCKEGVEPEETTSTFCGTPEYLA---P----EVLRK  170 (321)
T ss_pred             HHHHHHHHHHHHHHCCeEeccCCHHHeEECCCC---CEEEccCCCCccCCCCCCccccccCCcccCC---H----HHhcC
Confidence            478999999999997     8999999998853   39999999987532 2233456789999999   9    87766


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..|+.              ++|..||. +.+....+..+.   ..+..+|...+.++.++|.+||..||.+|++. ..++
T Consensus       171 ~~~~~~~DiwslG~il~el~~g~~pf~-~~~~~~~~~~i~---~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~-~~~~  245 (321)
T cd05603         171 EPYDRTVDWWCLGAVLYEMLYGLPPFY-SRDVSQMYDNIL---HKPLQLPGGKTVAACDLLVGLLHKDQRRRLGA-KADF  245 (321)
T ss_pred             CCCCCcCcccccchhhhhhhcCCCCCC-CCCHHHHHHHHh---cCCCCCCCCCCHHHHHHHHHHccCCHhhcCCC-CCCH
Confidence            55543              89999999 888888888887   34677888899999999999999999999965 2346


Q ss_pred             hhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         150 VDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       150 ~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      .++++|+||..++|..+....+.+|+.|...+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (321)
T cd05603         246 LEIKNHVFFSPINWDDLYHKRITPPYNPNVAGP  278 (321)
T ss_pred             HHHhCCCCcCCCCHHHHhcCCCCCCcCCCCCCc
Confidence            799999999999999998888888887765543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG0578|consensus

Probab=99.88  E-value=8.3e-23  Score=170.60  Aligned_cols=133  Identities=14%  Similarity=0.296  Sum_probs=117.4

Q ss_pred             HHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhccCc
Q psy3184          13 QVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIINVGI   86 (185)
Q Consensus        13 qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~~~~   86 (185)
                      +++.||+|||.+     |||.+||++..+.   ++||+|||++..+.... .-.+.+|||+|||   |    |++..+.|
T Consensus       377 e~l~aL~fLH~~gIiHrDIKSDnILL~~~g---~vKltDFGFcaqi~~~~~KR~TmVGTPYWMA---P----EVvtrk~Y  446 (550)
T KOG0578|consen  377 EILQGLKFLHARGIIHRDIKSDNILLTMDG---SVKLTDFGFCAQISEEQSKRSTMVGTPYWMA---P----EVVTRKPY  446 (550)
T ss_pred             HHHHHHHHHHhcceeeeccccceeEeccCC---cEEEeeeeeeeccccccCccccccCCCCccc---h----hhhhhccc
Confidence            556899999998     8899999999863   39999999998776654 6678999999999   9    99999888


Q ss_pred             ce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhh
Q psy3184          87 DN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI  152 (185)
Q Consensus        87 ~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~l  152 (185)
                      +.              +-|++||. ..++-.-+..|.++|...+..|+.+|+++++|+.+||..|+.+|+     ++.+|
T Consensus       447 G~KVDIWSLGIMaIEMveGEPPYl-nE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~Ra-----sA~eL  520 (550)
T KOG0578|consen  447 GPKVDIWSLGIMAIEMVEGEPPYL-NENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRA-----SAKEL  520 (550)
T ss_pred             CccccchhhhhHHHHHhcCCCCcc-CCChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCC-----CHHHH
Confidence            87              88999999 888887778888788788888999999999999999999999999     66999


Q ss_pred             hcCCCCCCC
Q psy3184         153 KKHKWFQGF  161 (185)
Q Consensus       153 l~hp~f~~~  161 (185)
                      |.||||+-+
T Consensus       521 L~HpFl~~a  529 (550)
T KOG0578|consen  521 LEHPFLKMA  529 (550)
T ss_pred             hcChhhhhc
Confidence            999999543

>KOG4717|consensus

Probab=99.88  E-value=5.4e-23  Score=170.87  Aligned_cols=144  Identities=24%  Similarity=0.366  Sum_probs=130.1

Q ss_pred             chhhhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCccc
Q psy3184           3 NDFLKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQT   77 (185)
Q Consensus         3 ~~~~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~   77 (185)
                      |+-|++.+.+||+.||.|||+.     ||||+|+++-...  ..+||.|||++..+..+....+.||+..|.|   |   
T Consensus       116 ~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKl--GlVKLTDFGFSNkf~PG~kL~TsCGSLAYSA---P---  187 (864)
T KOG4717|consen  116 NEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKL--GLVKLTDFGFSNKFQPGKKLTTSCGSLAYSA---P---  187 (864)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeec--CceEeeeccccccCCCcchhhcccchhhccC---c---
Confidence            3457788899999999999997     9999999998743  3499999999999999999999999999999   9   


Q ss_pred             ccchhccCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCccc
Q psy3184          78 YNMIINVGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        78 ~E~~~~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                       |++.+..|+.               ..|++||. ..|-.+++.+|.   .+.+..|..+|.++++||..||.+||.+|-
T Consensus       188 -EILLGDsYDAPAVDiWSLGVILyMLVCGq~PFq-eANDSETLTmIm---DCKYtvPshvS~eCrdLI~sMLvRdPkkRA  262 (864)
T KOG4717|consen  188 -EILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQ-EANDSETLTMIM---DCKYTVPSHVSKECRDLIQSMLVRDPKKRA  262 (864)
T ss_pred             -hhhhcCccCCcchhhhHHHHHHHHHHhCCCccc-cccchhhhhhhh---cccccCchhhhHHHHHHHHHHHhcCchhhc
Confidence             9999998987               89999999 667778888998   789999999999999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCChh
Q psy3184         143 GYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                           ++++|-.|+|++..+-.
T Consensus       263 -----slEeI~s~~Wlq~~D~~  279 (864)
T KOG4717|consen  263 -----SLEEIVSTSWLQAGDRG  279 (864)
T ss_pred             -----cHHHHhccccccCCCCC
Confidence                 67999999999987644

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.87  E-value=1.4e-21  Score=155.72  Aligned_cols=159  Identities=29%  Similarity=0.547  Sum_probs=133.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||+.     +|+|.||+++.+.   .++|+|||++......  ....+|++.|+|   |    |.+...
T Consensus       106 ~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~---~~kl~dfg~~~~~~~~--~~~~~~~~~y~a---P----E~~~~~  173 (290)
T cd05580         106 YAAQVVLALEYLHSLDIVYRDLKPENLLLDSDG---YIKITDFGFAKRVKGR--TYTLCGTPEYLA---P----EIILSK  173 (290)
T ss_pred             HHHHHHHHHHHHHHCCEecCCCCHHHEEECCCC---CEEEeeCCCccccCCC--CCCCCCCccccC---h----hhhcCC
Confidence            468999999999997     7899999998853   3899999998766443  445679999999   9    766544


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|..||. ..+.......+. .  ....+|..++..++++|.+||..||.+|++....+++
T Consensus       174 ~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~  249 (290)
T cd05580         174 GYGKAVDWWALGILIYEMLAGYPPFF-DDNPIQIYEKIL-E--GKVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVN  249 (290)
T ss_pred             CCCccccHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHh-c--CCccCCccCCHHHHHHHHHHccCCHHHccCcccCCHH
Confidence            3332              88999998 777777777777 3  3677888899999999999999999999988788999


Q ss_pred             hhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         151 DIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       151 ~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      +++.||||+..+|..+....+.+|+.|....+.|
T Consensus       250 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (290)
T cd05580         250 DIKNHPWFAGIDWIALLQRKIEAPFIPKVKGPGD  283 (290)
T ss_pred             HHHcCcccccCCHHHHhhccCCCCccCCCCCccc
Confidence            9999999999999999999999999998765543

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.87  E-value=1.3e-21  Score=155.19  Aligned_cols=153  Identities=20%  Similarity=0.386  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhccC
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVG   85 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~~   85 (185)
                      +.||+.||+|||+.     ||||+||+++.+.   .++|+|||.+.............|++.|+|   |    |++....
T Consensus       101 ~~qi~~al~~lH~~~ivH~dikp~Nili~~~~---~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~~  170 (277)
T cd05607         101 SAQITCGILHLHSMDIVYRDMKPENVLLDDQG---NCRLSDLGLAVELKDGKTITQRAGTNGYMA---P----EILKEEP  170 (277)
T ss_pred             HHHHHHHHHHHHHCCEEEccCChHhEEEcCCC---CEEEeeceeeeecCCCceeeccCCCCCccC---H----HHHccCC
Confidence            57999999999997     7899999998853   489999999887655444445679999999   9    8776655


Q ss_pred             cce--------------eccCCCCCCCCCh----HHHHHHHHhcCCCccCCC-CCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          86 IDN--------------IFSRPPFCVMNDP----MQTYNMIINVGIDKIPFP-KHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        86 ~~~--------------l~g~~Pf~~~~~~----~~~~~~i~~~~~~~~~~p-~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ++.              ++|..||. ....    .++...+.   .....++ ..++.++++||++||..||.+|+++ +
T Consensus       171 ~~~~~DvwslGv~l~el~~g~~p~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~-~  245 (277)
T cd05607         171 YSYPVDWFAMGCSIYEMVAGRTPFK-DHKEKVAKEELKRRTL---EDEVKFEHQNFTEESKDICRLFLAKKPEDRLGS-R  245 (277)
T ss_pred             CCCchhHHHHHHHHHHHHhCCCCCC-CCcchhhHHHHHHHhh---ccccccccccCCHHHHHHHHHHhccCHhhCCCC-c
Confidence            553              88999997 4322    23333333   1223333 4689999999999999999999965 2


Q ss_pred             CChhhhhcCCCCCCCChhhhhcccCCCCccCC
Q psy3184         147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPV  178 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~  178 (185)
                      +..++++.|+||++++|..+....++|||+|+
T Consensus       246 ~~~~~~~~h~~f~~~~~~~~~~~~~~~~~~~~  277 (277)
T cd05607         246 EKNDDPRKHEFFKTINFPRLEAGLIPPPFVPD  277 (277)
T ss_pred             cchhhhhcChhhcCCCHHHHhcCcCCCCCCCC
Confidence            22377889999999999999999999999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=1.6e-21  Score=159.07  Aligned_cols=157  Identities=28%  Similarity=0.493  Sum_probs=123.7

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--------------------------
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--------------------------   57 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--------------------------   57 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||.+.......                          
T Consensus       105 ~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (350)
T cd05573         105 FYIAELVLALDSVHKLGFIHRDIKPDNILIDADG---HIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHK  181 (350)
T ss_pred             HHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCC---CEEeecCCCCccCcccCcccccccccccccccccccccccccc
Confidence            3478999999999997     7999999998853   39999999987654332                          


Q ss_pred             ----ccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC
Q psy3184          58 ----ILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP  119 (185)
Q Consensus        58 ----~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p  119 (185)
                          ......||+.|+|   |    |++.+..++.              ++|..||. +.+....+..+. .+.....+|
T Consensus       182 ~~~~~~~~~~gt~~y~a---P----E~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~-~~~~~~~~~~i~-~~~~~~~~p  252 (350)
T cd05573         182 QRRVRANSTVGTPDYIA---P----EVLRGTPYGLECDWWSLGVILYEMLYGFPPFY-SDTLQETYNKII-NWKESLRFP  252 (350)
T ss_pred             cccccccccccCccccC---H----HHHcCCCCCCceeeEecchhhhhhccCCCCCC-CCCHHHHHHHHh-ccCCcccCC
Confidence                2335679999999   9    8877665543              89999999 777777777777 322345555


Q ss_pred             CC--CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         120 KH--VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       120 ~~--~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      ..  +++++.+||.+||. ||.+|++.    +++++.||||++++|....  ...+|++|.+.+..|
T Consensus       253 ~~~~~~~~~~~li~~ll~-dp~~R~~s----~~~ll~hp~~~~~~~~~~~--~~~~~~~~~~~~~~~  312 (350)
T cd05573         253 PDPPVSPEAIDLICRLLC-DPEDRLGS----FEEIKSHPFFKGIDWENLR--ETKPPFVPELSSPLD  312 (350)
T ss_pred             CCCCCCHHHHHHHHHHcc-ChhhcCCC----HHHHhcCCCcCCCCHHHHh--hCCCCcCCCCCCchh
Confidence            43  59999999999997 99999941    6999999999999999877  446788887776543

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG0604|consensus

Probab=99.87  E-value=3.5e-22  Score=156.53  Aligned_cols=134  Identities=25%  Similarity=0.367  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhccC
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVG   85 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~~   85 (185)
                      ..||..|+.|||+.     |+||+|+|........-+||+|||+++.........+.|-||+|.|   |    |++....
T Consensus       167 ~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYva---P----evlg~eK  239 (400)
T KOG0604|consen  167 MKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVA---P----EVLGPEK  239 (400)
T ss_pred             HHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEecccccccccCCCccccCCcccccccC---H----HHhCchh
Confidence            56889999999997     8999999998765555689999999998877777888999999999   9    9988777


Q ss_pred             cce--------------eccCCCCCCCCC----hHHHHHHHHhcCCCccCCCC----CCCHHHHHHHHHHhhcCcCcccC
Q psy3184          86 IDN--------------IFSRPPFCVMND----PMQTYNMIINVGIDKIPFPK----HVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        86 ~~~--------------l~g~~Pf~~~~~----~~~~~~~i~~~~~~~~~~p~----~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                      |+.              +.|.+||+ ...    ......+|. .|  .+.||.    .+|.+++++|+++|..+|.+|+ 
T Consensus       240 ydkscdmwSlgVimYIlLCGyPPFY-S~hg~aispgMk~rI~-~g--qy~FP~pEWs~VSe~aKdlIR~LLkt~PteRl-  314 (400)
T KOG0604|consen  240 YDKSCDMWSLGVIMYILLCGYPPFY-SNHGLAISPGMKRRIR-TG--QYEFPEPEWSCVSEAAKDLIRKLLKTEPTERL-  314 (400)
T ss_pred             cCCCCCccchhHHHHHhhcCCCccc-ccCCccCChhHHhHhh-cc--CccCCChhHhHHHHHHHHHHHHHhcCCchhhe-
Confidence            775              99999998 432    234566777 44  778883    4899999999999999999999 


Q ss_pred             CCCCChhhhhcCCCCCC
Q psy3184         144 YQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       144 ~~~~~~~~ll~hp~f~~  160 (185)
                          +++++++|||+.+
T Consensus       315 ----TI~~~m~hpwi~~  327 (400)
T KOG0604|consen  315 ----TIEEVMDHPWINQ  327 (400)
T ss_pred             ----eHHHhhcCchhcc
Confidence                7799999999954

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=2.1e-21  Score=157.82  Aligned_cols=155  Identities=23%  Similarity=0.425  Sum_probs=123.3

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .....||+.||.|||++     ||||+||+++.+.   .++|+|||++.....  .....+||+.|+|   |    |++.
T Consensus       104 ~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~---~~kL~Dfg~a~~~~~--~~~~~~gt~~y~a---P----E~~~  171 (333)
T cd05600         104 RFYMAEMFEAVDALHELGYIHRDLKPENFLIDASG---HIKLTDFGLSKGIVT--YANSVVGSPDYMA---P----EVLR  171 (333)
T ss_pred             HHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCC---CEEEEeCcCCccccc--ccCCcccCccccC---h----hHhc
Confidence            34568999999999997     7899999998753   499999999875533  3456789999999   9    8777


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC------CCCHHHHHHHHHHhhcCcCccc
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK------HVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~------~~s~~~~~li~~~l~~dp~~R~  142 (185)
                      +..|+.              ++|..||. +.+..+.+..+. .+......|.      .+|+++.+||.+||..+|.+|+
T Consensus       172 ~~~~~~~~DvwslG~il~ell~g~~pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~  249 (333)
T cd05600         172 GKGYDFTVDYWSLGCMLYEFLCGFPPFS-GSTPNETWENLK-YWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFG  249 (333)
T ss_pred             CCCCCCccceecchHHHhhhhhCCCCCC-CCCHHHHHHHHH-hccccccCCCCCccccccCHHHHHHHHHHhhChhhhcC
Confidence            655553              88999999 888888777776 3322233332      4699999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         143 GYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                           ++++++.||||+..+|..+.  ...||++|...+..
T Consensus       250 -----s~~~ll~h~~~~~~~~~~~~--~~~~~~~~~~~~~~  283 (333)
T cd05600         250 -----SLEDIKNHPFFKEVDWNELR--ELKPPFVPELESEI  283 (333)
T ss_pred             -----CHHHHHhCcccCCCCHHHHh--hCCCCCCCCCCCcc
Confidence                 66999999999999999876  56788888876544

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.86  E-value=2.2e-21  Score=159.43  Aligned_cols=152  Identities=25%  Similarity=0.576  Sum_probs=119.8

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--------------------------
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--------------------------   56 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--------------------------   56 (185)
                      +..+.|++.||+|||++     ||||+||+++.+  + .++|+|||+++.+...                          
T Consensus       104 ~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~--~-~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (360)
T cd05627         104 QFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAK--G-HVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKR  180 (360)
T ss_pred             HHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCC--C-CEEEeeccCCcccccccccccccccccCCccccccccccccc
Confidence            44578999999999998     899999999875  3 3999999988644211                          


Q ss_pred             ----------cccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcC
Q psy3184          57 ----------KILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVG  112 (185)
Q Consensus        57 ----------~~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~  112 (185)
                                ....+.+||+.|+|   |    |++.+..|+.              ++|.+||. +.+....+..+. .+
T Consensus       181 ~~~~~~~~~~~~~~~~~gt~~Y~A---P----E~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~-~~~~~~~~~~i~-~~  251 (360)
T cd05627         181 KAETWKKNRRQLAYSTVGTPDYIA---P----EVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFC-SETPQETYRKVM-NW  251 (360)
T ss_pred             ccccccccccccccccCCCccccC---H----HHHcCCCCCCcceeccccceeeecccCCCCCC-CCCHHHHHHHHH-cC
Confidence                      01224689999999   9    8887666554              88999999 888888888887 33


Q ss_pred             CCccCCCC--CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCC
Q psy3184         113 IDKIPFPK--HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPP  174 (185)
Q Consensus       113 ~~~~~~p~--~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p  174 (185)
                      .....+|.  .+|.++++||.+|+. ||.+|++.  .++++++.||||++++|..+.......|
T Consensus       252 ~~~~~~p~~~~~s~~~~~li~~l~~-~p~~R~~~--~~~~ei~~hp~f~~~~~~~~~~~~~~~~  312 (360)
T cd05627         252 KETLVFPPEVPISEKAKDLILRFCT-DSENRIGS--NGVEEIKSHPFFEGVDWGHIRERPAAIP  312 (360)
T ss_pred             CCceecCCCCCCCHHHHHHHHHhcc-ChhhcCCC--CCHHHHhcCCCCCCCCHHHHhcCCCCCC
Confidence            34455664  379999999999875 99999964  3579999999999999999987765555

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.86  E-value=2.7e-21  Score=158.82  Aligned_cols=158  Identities=28%  Similarity=0.599  Sum_probs=122.5

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-------------------------
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-------------------------   57 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-------------------------   57 (185)
                      +....||+.||+|||++     ||||+||+++.+.   .++|+|||+++.+....                         
T Consensus       104 ~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (364)
T cd05599         104 RFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKG---HIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMS  180 (364)
T ss_pred             HHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCC---CEEEeecccceecccccccccccccccccccccccccccccc
Confidence            34578999999999998     8999999998853   39999999987543211                         


Q ss_pred             --------------ccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHH
Q psy3184          58 --------------ILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMII  109 (185)
Q Consensus        58 --------------~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~  109 (185)
                                    ...+.+||+.|+|   |    |++....|+.              ++|..||. +.+..+.+..+.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~-~~~~~~~~~~i~  252 (364)
T cd05599         181 SKRKAETWKRNRRALAYSTVGTPDYIA---P----EVFLQTGYNKECDWWSLGVIMYEMLVGYPPFC-SDNPQETYRKII  252 (364)
T ss_pred             ccccccchhhcccccccccccCccccC---H----HHHcCCCCCCeeeeecchhHHHHhhcCCCCCC-CCCHHHHHHHHH
Confidence                          1123579999999   9    8877666554              88999999 888888877777


Q ss_pred             hcCCCccCCCC--CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         110 NVGIDKIPFPK--HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       110 ~~~~~~~~~p~--~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                       .+.....+|.  .+|+++++||++|+. +|.+|++.  .++++++.||||++.+|..+...  .+|++|.+.+.
T Consensus       253 -~~~~~~~~~~~~~~s~~~~~li~~ll~-~p~~R~~~--~~~~~ll~h~~~~~~~~~~~~~~--~~~~~~~~~~~  321 (364)
T cd05599         253 -NWKETLQFPDEVPLSPEAKDLIKRLCC-EAERRLGN--NGVNEIKSHPFFKGVDWEHIRER--PAPIIPELKSI  321 (364)
T ss_pred             -cCCCccCCCCCCCCCHHHHHHHHHHcc-CHhhcCCC--CCHHHHhcCCCcCCCCHHHHhhc--CCCCCCCCCCc
Confidence             4434455554  479999999999996 99999953  35899999999999999987643  66777766554

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.86  E-value=3.2e-21  Score=159.30  Aligned_cols=158  Identities=21%  Similarity=0.389  Sum_probs=125.0

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccc
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ...+.||+.||+|||+.     ||||+||+++.+.   .++|+|||.+.......  .....+||+.|+|   |    |+
T Consensus       145 ~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~---~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~a---P----E~  214 (370)
T cd05596         145 RFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSG---HLKLADFGTCMKMDANGMVRCDTAVGTPDYIS---P----EV  214 (370)
T ss_pred             HHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCC---CEEEEeccceeeccCCCcccCCCCCCCcCeEC---H----HH
Confidence            34468999999999998     7999999998853   39999999998664332  2345689999999   9    77


Q ss_pred             hhccC----cce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC--CCCHHHHHHHHHHhhcCcCc
Q psy3184          81 IINVG----IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        81 ~~~~~----~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~--~~s~~~~~li~~~l~~dp~~  140 (185)
                      +....    ++.              ++|.+||. +.+....+..+. .+...+.+|.  .+|.++++||.+||..+|.+
T Consensus       215 ~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r  292 (370)
T cd05596         215 LKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFY-ADSLVGTYSKIM-DHKNSLTFPDDIEISKQAKDLICAFLTDREVR  292 (370)
T ss_pred             hccCCCCCCCCCceeeeehhHHHHHHHhCCCCcC-CCCHHHHHHHHH-cCCCcCCCCCcCCCCHHHHHHHHHHccChhhc
Confidence            65421    222              88999999 888888888887 3334566665  57999999999999988877


Q ss_pred             --ccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         141 --RLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       141 --R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                        |+     ++++++.||||++.+|.........+|++|.+.+.
T Consensus       293 ~~R~-----s~~ell~h~~~~~~~~~~~~~~~~~~~~~p~~~~~  331 (370)
T cd05596         293 LGRN-----GVDEIKSHPFFKNDQWTFDNIRETVAPVVPELSSD  331 (370)
T ss_pred             cCCC-----CHHHHhcCcccCCCChhhHHhcCCCcCccCcCCCc
Confidence              77     67999999999999998766666778888876654

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.86  E-value=2.9e-21  Score=158.91  Aligned_cols=153  Identities=25%  Similarity=0.541  Sum_probs=118.8

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc------------------------
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK------------------------   57 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~------------------------   57 (185)
                      .+..+.||+.||+|||++     ||||+||+++.+  + .++|+|||+++.+....                        
T Consensus       103 ~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~--~-~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (363)
T cd05628         103 TQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSK--G-HVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSK  179 (363)
T ss_pred             HHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCC--C-CEEEeeccCcccccccccccccccccccccccccccccccc
Confidence            345678999999999998     899999999875  3 49999999987542210                        


Q ss_pred             ------------ccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhc
Q psy3184          58 ------------ILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINV  111 (185)
Q Consensus        58 ------------~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~  111 (185)
                                  .....+||+.|+|   |    |++.+..|+.              ++|..||. +.+..+.+.++. .
T Consensus       180 ~~~~~~~~~~~~~~~~~~Gt~~Y~a---P----E~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~-~~~~~~~~~~i~-~  250 (363)
T cd05628         180 RKAETWKRNRRQLAFSTVGTPDYIA---P----EVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFC-SETPQETYKKVM-N  250 (363)
T ss_pred             cccchhhhccccccccccCCccccC---H----HHHcCCCCCCchhhhhhHHHHHHHHhCCCCCC-CCCHHHHHHHHH-c
Confidence                        1134689999999   9    8887766654              88999999 888888888887 4


Q ss_pred             CCCccCCCC--CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCC
Q psy3184         112 GIDKIPFPK--HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPP  174 (185)
Q Consensus       112 ~~~~~~~p~--~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p  174 (185)
                      +.....+|.  .+|++++++|.+++. +|.+|++.  .+++++++||||++++|..+......+|
T Consensus       251 ~~~~~~~p~~~~~s~~~~~li~~l~~-~~~~r~~r--~~~~ei~~hp~f~~~~~~~~~~~~~~~~  312 (363)
T cd05628         251 WKETLIFPPEVPISEKAKDLILRFCC-EWEHRIGA--PGVEEIKTNPFFEGVDWEHIRERPAAIP  312 (363)
T ss_pred             CcCcccCCCcCCCCHHHHHHHHHHcC-ChhhcCCC--CCHHHHhCCCCCCCCCHHHHHhCCCCCC
Confidence            334555664  479999999999875 67766531  3779999999999999999977654444

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.86  E-value=2.7e-21  Score=153.85  Aligned_cols=159  Identities=21%  Similarity=0.345  Sum_probs=124.8

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.|++.||+|||+.     |+||+||+++.+.   .++++|||.+.............|++.|+|   |    |++.+
T Consensus       106 ~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~---~~kl~Dfg~~~~~~~~~~~~~~~g~~~~~a---P----E~~~~  175 (285)
T cd05632         106 FYAAEILCGLEDLHRENTVYRDLKPENILLDDYG---HIRISDLGLAVKIPEGESIRGRVGTVGYMA---P----EVLNN  175 (285)
T ss_pred             HHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCC---CEEEecCCcceecCCCCcccCCCCCcCccC---h----HHhcC
Confidence            3468999999999998     7899999998753   399999999876654444455689999999   9    87765


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ..++.              ++|..||. +.+.......+... ......++..++.++.+|+.+||..||.+|+++....
T Consensus       176 ~~~~~~~Di~slG~~l~~l~~g~~P~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~  254 (285)
T cd05632         176 QRYTLSPDYWGLGCLIYEMIEGQSPFR-GRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEG  254 (285)
T ss_pred             CCCCcccchHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHhhhccccccCccCCHHHHHHHHHHccCCHhHcCCCcccC
Confidence            54443              88999998 65543332222100 0124456677899999999999999999999875556


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPV  178 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~  178 (185)
                      +++++.|+||+.++|+.+......|||+|.
T Consensus       255 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (285)
T cd05632         255 AGEVKRHPFFRNMNFKRLEAGMLDPPFVPD  284 (285)
T ss_pred             hHHHHcChhhhcCCHHHHhcCcCCCCCCCC
Confidence            899999999999999999999999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG0032|consensus

Probab=99.86  E-value=2.8e-21  Score=159.79  Aligned_cols=137  Identities=21%  Similarity=0.419  Sum_probs=118.2

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCC-CeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAG-NDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~-~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      -...||+.|+.|||+.     |+||+|+++.....+ ..++++|||++.....+......+||+.|+|   |    |++.
T Consensus       139 ~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~A---P----Evl~  211 (382)
T KOG0032|consen  139 GIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGERLHTIVGTPEYVA---P----EVLG  211 (382)
T ss_pred             HHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCceEeeecCCccccC---c----hhhc
Confidence            4578999999999998     889999999876432 2599999999998877778889999999999   9    9998


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ..+|+.              +.|.+||. +.+....+..|. .+  .+.++    ..+|..+++||++||..||.+|+  
T Consensus       212 ~~~y~~~~DiWS~Gvi~yiLL~G~~PF~-~~~~~~~~~~i~-~~--~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~--  285 (382)
T KOG0032|consen  212 GRPYGDEVDVWSIGVILYILLSGVPPFW-GETEFEIFLAIL-RG--DFDFTSEPWDDISESAKDFIRKLLEFDPRKRL--  285 (382)
T ss_pred             CCCCCcccchhHHHHHHHHHhhCCCCCc-CCChhHHHHHHH-cC--CCCCCCCCccccCHHHHHHHHHhcccCcccCC--
Confidence            777776              99999999 999888888888 44  44444    35799999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~  161 (185)
                         ++.++|.|||+++.
T Consensus       286 ---ta~~~L~HpWi~~~  299 (382)
T KOG0032|consen  286 ---TAAQALQHPWIKSI  299 (382)
T ss_pred             ---CHHHHhcCccccCC
Confidence               66999999999865

>KOG0597|consensus

Probab=99.86  E-value=5.6e-22  Score=166.14  Aligned_cols=133  Identities=20%  Similarity=0.393  Sum_probs=118.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.||.|||++     |+||.||++..+.   .+|++|||+++.+..+. ...++-|||.|||   |    |++.+
T Consensus       105 ~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~---~~KlcdFg~Ar~m~~~t~vltsikGtPlYmA---P----Elv~e  174 (808)
T KOG0597|consen  105 IAYDLVSALYYLHSNRILHRDMKPQNILLEKGG---TLKLCDFGLARAMSTNTSVLTSIKGTPLYMA---P----ELVEE  174 (808)
T ss_pred             HHHHHHHHHHHHHhcCcccccCCcceeeecCCC---ceeechhhhhhhcccCceeeeeccCcccccC---H----HHHcC
Confidence            478999999999998     8899999999953   39999999999876653 4556789999999   9    99998


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .+|+.              ..|++||+ +...-++..+|.   .+++.+|..+|.++.+|+.++|.+||.+|+++     
T Consensus       175 ~pyd~~sDlWslGcilYE~~~G~PPF~-a~si~~Lv~~I~---~d~v~~p~~~S~~f~nfl~gLL~kdP~~RltW-----  245 (808)
T KOG0597|consen  175 QPYDHTSDLWSLGCILYELYVGQPPFY-ARSITQLVKSIL---KDPVKPPSTASSSFVNFLQGLLIKDPAQRLTW-----  245 (808)
T ss_pred             CCccchhhHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHh---cCCCCCcccccHHHHHHHHHHhhcChhhcccH-----
Confidence            88886              89999999 998999999999   67899999999999999999999999999966     


Q ss_pred             hhhhcCCCCCCC
Q psy3184         150 VDIKKHKWFQGF  161 (185)
Q Consensus       150 ~~ll~hp~f~~~  161 (185)
                      .+++.|||.++.
T Consensus       246 ~~Ll~HpF~k~~  257 (808)
T KOG0597|consen  246 TDLLGHPFWKGK  257 (808)
T ss_pred             HHHhcChHHhhh
Confidence            999999998763

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.86  E-value=5.5e-21  Score=158.19  Aligned_cols=162  Identities=25%  Similarity=0.446  Sum_probs=123.2

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec--------------------------
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD--------------------------   55 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~--------------------------   55 (185)
                      .+....||+.||+|||++     ||||+||+++.+.   .++|+|||++.....                          
T Consensus       103 ~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g---~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (382)
T cd05625         103 ARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDG---HIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGD  179 (382)
T ss_pred             HHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCC---CEEEeECCCCccccccccccccccccccccccccccccccc
Confidence            345578999999999998     7999999998853   399999998642210                          


Q ss_pred             ----------------------CcccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCCCC
Q psy3184          56 ----------------------GKILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMN   99 (185)
Q Consensus        56 ----------------------~~~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~   99 (185)
                                            .....+.+||+.|+|   |    |++.+.+|+.              ++|.+||. +.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~a---P----E~~~~~~~~~~~DiwSlGvil~elltG~~Pf~-~~  251 (382)
T cd05625         180 PANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIA---P----EVLLRTGYTQLCDWWSVGVILYEMLVGQPPFL-AQ  251 (382)
T ss_pred             cccccccccccchhhhhccccccccccccccCcccCC---H----HHhcCCCCCCeeeEEechHHHHHHHhCCCCCC-CC
Confidence                                  001124579999999   9    8887666654              88999999 88


Q ss_pred             ChHHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccC
Q psy3184         100 DPMQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP  177 (185)
Q Consensus       100 ~~~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p  177 (185)
                      +..+....+. .+.....+|  ..+++++.++|.+|+ .+|.+|++.  .++++++.||||++++|..... ...+|+.|
T Consensus       252 ~~~~~~~~i~-~~~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~--~~~~ei~~hp~f~~~~~~~~~~-~~~~~~~~  326 (382)
T cd05625         252 TPLETQMKVI-NWQTSLHIPPQAKLSPEASDLIIKLC-RGPEDRLGK--NGADEIKAHPFFKTIDFSSDLR-QQSAPYIP  326 (382)
T ss_pred             CHHHHHHHHH-ccCCCcCCCCcccCCHHHHHHHHHHc-cCHhHcCCC--CCHHHHhcCCCcCCcChHHHHh-cCCCCccC
Confidence            7777776766 333344555  458999999999987 499999962  3579999999999999997654 35788888


Q ss_pred             CCCCCCC
Q psy3184         178 VASILRD  184 (185)
Q Consensus       178 ~~~~~~~  184 (185)
                      .+..+.|
T Consensus       327 ~~~~~~~  333 (382)
T cd05625         327 KITHPTD  333 (382)
T ss_pred             cCCCcch
Confidence            8776554

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.85  E-value=4.7e-21  Score=152.60  Aligned_cols=156  Identities=22%  Similarity=0.383  Sum_probs=121.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.||.|||+.     |+||+||+++.+.   .++++|||.+.....+.......|++.|+|   |    |++...
T Consensus       107 ~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~---~~~l~Dfg~~~~~~~~~~~~~~~g~~~y~a---P----E~~~~~  176 (285)
T cd05630         107 YAAEICCGLEDLHQERIVYRDLKPENILLDDHG---HIRISDLGLAVHVPEGQTIKGRVGTVGYMA---P----EVVKNE  176 (285)
T ss_pred             HHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCC---CEEEeeccceeecCCCccccCCCCCccccC---h----HHHcCC
Confidence            468999999999997     7999999998753   389999999876654444445689999999   9    887665


Q ss_pred             Ccce--------------eccCCCCCCCCChH---HHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPM---QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~---~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .++.              ++|..||. .....   .....+..  .....++..+++++.+|+.+||..||.+|+++...
T Consensus       177 ~~~~~~DiwslG~~l~~l~~g~~Pf~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~  253 (285)
T cd05630         177 RYTFSPDWWALGCLLYEMIAGQSPFQ-QRKKKIKREEVERLVK--EVQEEYSEKFSPDARSLCKMLLCKDPKERLGCQGG  253 (285)
T ss_pred             CCCCccccHHHHHHHHHHHhCCCCCC-CCCccchHHHHHhhhh--hhhhhcCccCCHHHHHHHHHHhhcCHHHccCCCCC
Confidence            5544              88999998 43321   22222221  12345667789999999999999999999975333


Q ss_pred             ChhhhhcCCCCCCCChhhhhcccCCCCccCC
Q psy3184         148 GIVDIKKHKWFQGFDWDGLRNQTLTPPIIPV  178 (185)
Q Consensus       148 ~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~  178 (185)
                      .++++++||||+..+|.........|||.|.
T Consensus       254 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~  284 (285)
T cd05630         254 GAREVKEHPLFKQINFKRLEAGMLEPPFKPD  284 (285)
T ss_pred             chHHHHcChhhhccCHHHHhcCCCCCCCCCC
Confidence            4899999999999999999888888999885

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0580|consensus

Probab=99.85  E-value=9.9e-22  Score=149.57  Aligned_cols=131  Identities=23%  Similarity=0.374  Sum_probs=117.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      +-.|++.|+.|||..     |+||+|+|+....   .++++|||.+.... .....+.|||..|++   |    ||..+.
T Consensus       129 Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~---~lkiAdfGwsV~~p-~~kR~tlcgt~dyl~---p----Emv~~~  197 (281)
T KOG0580|consen  129 YIKQLANALLYCHLKRVIHRDIKPENLLLGSAG---ELKIADFGWSVHAP-SNKRKTLCGTLDYLP---P----EMVEGR  197 (281)
T ss_pred             HHHHHHHHHHHhccCCcccCCCCHHHhccCCCC---CeeccCCCceeecC-CCCceeeecccccCC---H----hhcCCC
Confidence            367999999999987     8999999999853   39999999987665 556778999999999   9    999988


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              +.|.+||. ..+..+++..|.   .....+|..+|.+++|+|.+||.++|.+|+     ...
T Consensus       198 ~hd~~Vd~w~lgvl~yeflvg~ppFe-s~~~~etYkrI~---k~~~~~p~~is~~a~dlI~~ll~~~p~~r~-----~l~  268 (281)
T KOG0580|consen  198 GHDKFVDLWSLGVLCYEFLVGLPPFE-SQSHSETYKRIR---KVDLKFPSTISGGAADLISRLLVKNPIERL-----ALT  268 (281)
T ss_pred             CccchhhHHHHHHHHHHHHhcCCchh-hhhhHHHHHHHH---HccccCCcccChhHHHHHHHHhccCccccc-----cHH
Confidence            8776              99999999 888999999999   568999999999999999999999999999     569


Q ss_pred             hhhcCCCCCC
Q psy3184         151 DIKKHKWFQG  160 (185)
Q Consensus       151 ~ll~hp~f~~  160 (185)
                      +++.|||+..
T Consensus       269 ~v~~hpwI~a  278 (281)
T KOG0580|consen  269 EVMDHPWIVA  278 (281)
T ss_pred             HHhhhHHHHh
Confidence            9999999854

>KOG0198|consensus

Probab=99.85  E-value=3.4e-21  Score=154.65  Aligned_cols=140  Identities=17%  Similarity=0.283  Sum_probs=108.6

Q ss_pred             hhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec----CcccccccCCccccccCCCcc
Q psy3184           6 LKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD----GKILRLLSGRPPFCVMNDPMQ   76 (185)
Q Consensus         6 ~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~----~~~~~~~~gt~~y~a~~~P~~   76 (185)
                      +-+..+.||++||.|||++     ||||+|||++.. .+ .++|+|||.++....    ......+.||+.|||   |  
T Consensus       118 ~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~-~~-~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~ma---P--  190 (313)
T KOG0198|consen  118 LVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPS-NG-DVKLADFGLAKKLESKGTKSDSELSVQGTPNYMA---P--  190 (313)
T ss_pred             HHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCC-CC-eEEeccCccccccccccccccccccccCCccccC---c--
Confidence            3456689999999999987     899999999983 12 499999999987653    223446899999999   9  


Q ss_pred             cccchhccCcc---e------------eccCCCCCCC-CChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCc
Q psy3184          77 TYNMIINVGID---N------------IFSRPPFCVM-NDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        77 ~~E~~~~~~~~---~------------l~g~~Pf~~~-~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~  140 (185)
                        |++......   .            ++|.+||. . ....+..-.+. .....+.+|..+|+++++||.+||.+||.+
T Consensus       191 --Evi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~-~~~~~~~~~~~ig-~~~~~P~ip~~ls~~a~~Fl~~C~~~~p~~  266 (313)
T KOG0198|consen  191 --EVIRNGEVARRESDIWSLGCTVVEMLTGKPPWS-EFFEEAEALLLIG-REDSLPEIPDSLSDEAKDFLRKCFKRDPEK  266 (313)
T ss_pred             --hhhcCCCcCCccchhhhcCCEEEeccCCCCcch-hhcchHHHHHHHh-ccCCCCCCCcccCHHHHHHHHHHhhcCccc
Confidence              877742111   1            89999998 4 34444444444 222456899999999999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCC
Q psy3184         141 RLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       141 R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      ||     ++.++|.|||.+..
T Consensus       267 Rp-----ta~eLL~hpf~~~~  282 (313)
T KOG0198|consen  267 RP-----TAEELLEHPFLKQN  282 (313)
T ss_pred             Cc-----CHHHHhhChhhhcc
Confidence            99     66999999998653

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.85  E-value=8.6e-21  Score=156.80  Aligned_cols=158  Identities=29%  Similarity=0.583  Sum_probs=121.2

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-------------c------------
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-------------K------------   57 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-------------~------------   57 (185)
                      +..+.|++.||+|||++     ||||+||+++.+  + .++++|||+++.....             .            
T Consensus       104 ~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~--~-~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (377)
T cd05629         104 RFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRG--G-HIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVA  180 (377)
T ss_pred             HHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCC--C-CEEEeecccccccccccccccccccccccccccccccccccc
Confidence            34578999999999998     899999999875  3 4999999988522100             0            


Q ss_pred             -----------------------ccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCCCCC
Q psy3184          58 -----------------------ILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMND  100 (185)
Q Consensus        58 -----------------------~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~  100 (185)
                                             .....+||+.|+|   |    |++....|+.              ++|.+||. +.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~~~~~~~~~DiwSlGvil~elltG~~Pf~-~~~  252 (377)
T cd05629         181 VDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIA---P----EIFLQQGYGQECDWWSLGAIMFECLIGWPPFC-SEN  252 (377)
T ss_pred             cccccccccchhhhhhhhhcccccccccCCCccccC---H----HHHccCCCCCceeeEecchhhhhhhcCCCCCC-CCC
Confidence                                   0013579999999   9    8877665554              88999999 878


Q ss_pred             hHHHHHHHHhcCCCccCCCC--CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCC
Q psy3184         101 PMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPV  178 (185)
Q Consensus       101 ~~~~~~~i~~~~~~~~~~p~--~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~  178 (185)
                      ..+.+..+. .+.....+|.  .+|.++++||.+||. +|.+|++.  .++.+++.||||++++|..+.  .+.+|++|.
T Consensus       253 ~~~~~~~i~-~~~~~~~~p~~~~~s~~~~dli~~lL~-~~~~r~~r--~~~~~~l~hp~~~~~~~~~~~--~~~~~~~~~  326 (377)
T cd05629         253 SHETYRKII-NWRETLYFPDDIHLSVEAEDLIRRLIT-NAENRLGR--GGAHEIKSHPFFRGVDWDTIR--QIRAPFIPQ  326 (377)
T ss_pred             HHHHHHHHH-ccCCccCCCCCCCCCHHHHHHHHHHhc-CHhhcCCC--CCHHHHhcCCCcCCCCHHHHc--cCCCCcccC
Confidence            778777777 4434566664  489999999999997 88888632  378999999999999999884  457788877


Q ss_pred             CCCC
Q psy3184         179 ASIL  182 (185)
Q Consensus       179 ~~~~  182 (185)
                      +...
T Consensus       327 ~~~~  330 (377)
T cd05629         327 LKSI  330 (377)
T ss_pred             CCCc
Confidence            6543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0585|consensus

Probab=99.85  E-value=1.6e-21  Score=160.41  Aligned_cols=134  Identities=23%  Similarity=0.429  Sum_probs=113.2

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee------cCcccccccCCccccccCCCc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK------DGKILRLLSGRPPFCVMNDPM   75 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~------~~~~~~~~~gt~~y~a~~~P~   75 (185)
                      ++.+-..++.||+|||.+     ||||.|+|+.++  +. +|++|||.+-...      ........+|||.|||   | 
T Consensus       212 Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~--g~-VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~A---P-  284 (576)
T KOG0585|consen  212 ARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSD--GT-VKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFA---P-  284 (576)
T ss_pred             HHHHHHHHHHHHHHHHhcCeeccccchhheEEcCC--Cc-EEeeccceeeecccCCccccHHHHhhcCCCccccc---h-
Confidence            566677899999999998     899999999997  43 9999999887552      2234455799999999   9 


Q ss_pred             ccccchhc---cCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCC--CCHHHHHHHHHHhh
Q psy3184          76 QTYNMIIN---VGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKH--VTRTAQSLIKALCK  135 (185)
Q Consensus        76 ~~~E~~~~---~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~--~s~~~~~li~~~l~  135 (185)
                         |++..   ..|+.               ++|+.||. ++...+++.+|+   ..++.+|..  +.+++++||++||.
T Consensus       285 ---E~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~-~~~~~~l~~KIv---n~pL~fP~~pe~~e~~kDli~~lL~  357 (576)
T KOG0585|consen  285 ---ELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFF-DDFELELFDKIV---NDPLEFPENPEINEDLKDLIKRLLE  357 (576)
T ss_pred             ---HhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcc-cchHHHHHHHHh---cCcccCCCcccccHHHHHHHHHHhh
Confidence               98876   22332               99999999 999999999999   568888854  89999999999999


Q ss_pred             cCcCcccCCCCCChhhhhcCCCCC
Q psy3184         136 ESPAERLGYQRGGIVDIKKHKWFQ  159 (185)
Q Consensus       136 ~dp~~R~~~~~~~~~~ll~hp~f~  159 (185)
                      +||.+|+     ++.++..|||..
T Consensus       358 KdP~~Ri-----~l~~ik~Hpwvt  376 (576)
T KOG0585|consen  358 KDPEQRI-----TLPDIKLHPWVT  376 (576)
T ss_pred             cChhhee-----ehhhheecceec
Confidence            9999999     669999999974

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.85  E-value=1.3e-20  Score=152.97  Aligned_cols=155  Identities=25%  Similarity=0.434  Sum_probs=120.0

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCcccccch
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ....||+.||+|||+.     ||||+||+++.+.   .++|+|||++..+.....  .....||+.|+|   |    |++
T Consensus       106 ~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~---~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~a---P----E~~  175 (330)
T cd05601         106 FYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTG---HIKLADFGSAARLTANKMVNSKLPVGTPDYIA---P----EVL  175 (330)
T ss_pred             HHHHHHHHHHHHHHHCCeEcccCchHheEECCCC---CEEeccCCCCeECCCCCceeeecccCCccccC---H----HHh
Confidence            3467999999999997     8999999998853   499999999987654332  234579999999   9    766


Q ss_pred             hc------cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC--CCCHHHHHHHHHHhhcCcC
Q psy3184          82 IN------VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        82 ~~------~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~--~~s~~~~~li~~~l~~dp~  139 (185)
                      ..      ..|+.              ++|..||. +.+....+..+. .......+|.  .++.++.+||.+||. +|.
T Consensus       176 ~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~li~~ll~-~p~  252 (330)
T cd05601         176 TTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFH-EGTSAKTYNNIM-NFQRFLKFPEDPKVSSDFLDLIQSLLC-GQK  252 (330)
T ss_pred             ccccccccCCCCCcceeecccceeeeeccCCCCCC-CCCHHHHHHHHH-cCCCccCCCCCCCCCHHHHHHHHHHcc-Chh
Confidence            52      22222              89999998 777777777776 3323345553  579999999999997 999


Q ss_pred             cccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         140 ERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       140 ~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                      +|+     ++++++.||||+.++|..+..  ..||+.|.+.+..
T Consensus       253 ~R~-----t~~~l~~h~~~~~~~~~~~~~--~~~~~~~~~~~~~  289 (330)
T cd05601         253 ERL-----GYEGLCCHPFFSKIDWNNIRN--SLPPFVPTLKSDD  289 (330)
T ss_pred             hCC-----CHHHHhCCCCcCCCCHHHHhh--CCCCccCcCCCcc
Confidence            999     559999999999999998765  3677777766544

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.85  E-value=5.4e-21  Score=151.26  Aligned_cols=155  Identities=25%  Similarity=0.447  Sum_probs=123.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.||.|||+.     ||+|+||+++.+.   .++++|||.+.............++..|++   |    |++.+.
T Consensus       100 ~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~y~~---P----E~~~~~  169 (277)
T cd05577         100 YAAQIICGLEHLHQRRIVYRDLKPENVLLDDHG---NVRISDLGLAVELKGGKKIKGRAGTPGYMA---P----EVLQGE  169 (277)
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCHHHEEECCCC---CEEEccCcchhhhccCCccccccCCCCcCC---H----HHhcCC
Confidence            367999999999998     7899999998853   399999998876554444445678889999   9    877654


Q ss_pred             Ccce--------------eccCCCCCCCCCh----HHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDP----MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~----~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .++.              ++|..||. ..+.    ..+...+.   .....+|..+++++.++|++||..||.+||+...
T Consensus       170 ~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~  245 (277)
T cd05577         170 VYDFSVDWFALGCTLYEMIAGRSPFR-QRKEKVEKEELKRRTL---EMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRG  245 (277)
T ss_pred             CCCchhhhHHHHHHHHHHhhCCCCCC-CCcccccHHHHHhccc---cccccCCccCCHHHHHHHHHHccCChhHccCCCc
Confidence            4443              78999997 5433    23333333   2355677788999999999999999999998867


Q ss_pred             CChhhhhcCCCCCCCChhhhhcccCCCCccCC
Q psy3184         147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPV  178 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~  178 (185)
                      .++.+++.||||+.++|....+...+|||.|+
T Consensus       246 ~~~~~ll~h~~~~~~~~~~~~~~~~~~~~~~~  277 (277)
T cd05577         246 GSADEVREHPLFKDLNWRRLEAGMLEPPFIPD  277 (277)
T ss_pred             ccHHHHHhChhhhcCChhhhhcCCCCCCCCCC
Confidence            78899999999999999999888889999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.85  E-value=1.3e-20  Score=155.85  Aligned_cols=162  Identities=23%  Similarity=0.430  Sum_probs=123.0

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccc
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ...+.||+.||+|||++     ||||+||+++.+.   .++|+|||++.......  ...+.+||+.|||   |    |+
T Consensus       145 ~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~---~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~a---P----E~  214 (370)
T cd05621         145 KFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHG---HLKLADFGTCMKMDETGMVRCDTAVGTPDYIS---P----EV  214 (370)
T ss_pred             HHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCC---CEEEEecccceecccCCceecccCCCCcccCC---H----HH
Confidence            34578999999999998     8999999998753   49999999998764332  2346789999999   9    87


Q ss_pred             hhccC----cce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC--CCCHHHHHHHHHHhhcCcCc
Q psy3184          81 IINVG----IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        81 ~~~~~----~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~--~~s~~~~~li~~~l~~dp~~  140 (185)
                      +...+    |+.              ++|..||. +.+....+..+. .....+.+|.  .+|..+++++.+||.. +.+
T Consensus       215 ~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~-~~~~~~~~~~i~-~~~~~~~~p~~~~~s~~~~~li~~~L~~-~~~  291 (370)
T cd05621         215 LKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFY-ADSLVGTYSKIM-DHKNSLNFPEDVEISKHAKNLICAFLTD-REV  291 (370)
T ss_pred             HhccCCCCCCCcccCEEeehHHHHHHHhCCCCCC-CCCHHHHHHHHH-hCCcccCCCCcccCCHHHHHHHHHHccC-chh
Confidence            76432    222              89999999 888888888887 3323456665  4799999999999974 444


Q ss_pred             ccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         141 RLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       141 R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      |++  |.++.++++||||+..+|.........+|+.|.+.+..|
T Consensus       292 r~~--R~~~~e~l~hp~~~~~~~~~~~~~~~~~~~~p~~~~~~~  333 (370)
T cd05621         292 RLG--RNGVEEIKQHPFFKNDQWNWDNIRETAAPVVPELSSDID  333 (370)
T ss_pred             ccC--CCCHHHHhcCcccCCCCcChHhcCCCCCCcCCCCCCcch
Confidence            332  127799999999999888766666678888888776543

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.84  E-value=1.4e-20  Score=149.49  Aligned_cols=153  Identities=22%  Similarity=0.395  Sum_probs=118.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      .+.|++.||+|||+.     ||||+||+++.+.   .++++|||++...... ......|++.|+|   |    |++.. 
T Consensus       102 i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~---~~~l~dfg~~~~~~~~-~~~~~~~~~~y~a---P----E~~~~~  170 (279)
T cd05633         102 YATEIILGLEHMHNRFVVYRDLKPANILLDEHG---HVRISDLGLACDFSKK-KPHASVGTHGYMA---P----EVLQKG  170 (279)
T ss_pred             HHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCC---CEEEccCCcceecccc-CccCcCCCcCccC---H----HHhcCC
Confidence            478999999999987     7999999998753   3899999998755332 2234579999999   9    76642 


Q ss_pred             cCcce--------------eccCCCCCCCCC---hHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMND---PMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~---~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ..++.              ++|..||. ..+   .........   .....+|..++.+++++|++||..||.+|++++.
T Consensus       171 ~~~~~~~Di~slG~~l~~l~~g~~pf~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~  246 (279)
T cd05633         171 TAYDSSADWFSLGCMLFKLLRGHSPFR-QHKTKDKHEIDRMTL---TVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLG  246 (279)
T ss_pred             CCCCchhhhHHHHHHHHHHHhCCCCcC-CCCCcCHHHHHHHhh---cCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCC
Confidence            33332              88999997 332   222222222   2356677889999999999999999999998777


Q ss_pred             CChhhhhcCCCCCCCChhhhhcccCCCCccC
Q psy3184         147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP  177 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p  177 (185)
                      .+++++++||||++.+|..+..++.++|-+|
T Consensus       247 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~  277 (279)
T cd05633         247 RGAQEVKEHVFFKGIDWQQVYLQKYPPPLIP  277 (279)
T ss_pred             CCHHHHHhCccccCCCHhHHhcCCCCCCCCC
Confidence            7899999999999999999887777766554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.84  E-value=2.7e-20  Score=154.21  Aligned_cols=158  Identities=24%  Similarity=0.386  Sum_probs=117.4

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-------------------------
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-------------------------   56 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-------------------------   56 (185)
                      .+..+.||+.||+|||+.     ||||+||+++.+  + .++|+|||+++.....                         
T Consensus       103 ~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~--~-~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (381)
T cd05626         103 ARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLD--G-HIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDD  179 (381)
T ss_pred             HHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCC--C-CEEEeeCcCCcccccccccccccccccccccccCccccccc
Confidence            455678999999999998     799999999875  3 4999999987532100                         


Q ss_pred             -----------------------cccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCCCC
Q psy3184          57 -----------------------KILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMN   99 (185)
Q Consensus        57 -----------------------~~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~   99 (185)
                                             ....+.+||+.|+|   |    |++.+..|+.              ++|..||. +.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~a---P----E~~~~~~~~~~~DiwSlG~il~elltG~~Pf~-~~  251 (381)
T cd05626         180 VSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIA---P----EVLLRKGYTQLCDWWSVGVILFEMLVGQPPFL-AP  251 (381)
T ss_pred             ccccccccccchhhccccccccccccccccCCccccC---H----HHHcCCCCCCccceeehhhHHHHHHhCCCCCc-CC
Confidence                                   01134689999999   9    8887666554              89999998 77


Q ss_pred             ChHHHHHHHHhcCCCccCCCC--CCCHHHHHHHHHHhhc--CcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCc
Q psy3184         100 DPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKE--SPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI  175 (185)
Q Consensus       100 ~~~~~~~~i~~~~~~~~~~p~--~~s~~~~~li~~~l~~--dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~  175 (185)
                      +.......+. .+.....+|.  .+|+++++||.+|+..  ++..|+     ++.+++.||||++++|..... ..++|+
T Consensus       252 ~~~~~~~~i~-~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~-----~~~~~l~hp~f~~~~~~~~~~-~~~~~~  324 (381)
T cd05626         252 TPTETQLKVI-NWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRN-----GADDIKAHPFFSEVDFSSDIR-TQPAPY  324 (381)
T ss_pred             CHHHHHHHHH-ccccccCCCCCCCCCHHHHHHHHHHccCcccccCCC-----CHHHHhcCcccCCCChhHHhh-cCCCCc
Confidence            7666666665 3323445553  5899999999996644  444588     669999999999999987554 357788


Q ss_pred             cCCCCCC
Q psy3184         176 IPVASIL  182 (185)
Q Consensus       176 ~p~~~~~  182 (185)
                      .|.+..+
T Consensus       325 ~p~~~~~  331 (381)
T cd05626         325 VPKISHP  331 (381)
T ss_pred             cCcCCCc
Confidence            8877654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.84  E-value=2.9e-20  Score=153.51  Aligned_cols=160  Identities=25%  Similarity=0.453  Sum_probs=120.2

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--------------------------
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--------------------------   56 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--------------------------   56 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.   .++|+|||++......                          
T Consensus       104 ~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~---~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (376)
T cd05598         104 RFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDG---HIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEI  180 (376)
T ss_pred             HHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCC---CEEEEeCCCCcccccccccccccccccccccccccccccccc
Confidence            34478999999999997     8999999998753   3999999987422100                          


Q ss_pred             ------------------cccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCCCCChHHH
Q psy3184          57 ------------------KILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQT  104 (185)
Q Consensus        57 ------------------~~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~  104 (185)
                                        .....++||+.|||   |    |++.+..|+.              ++|..||. +.+..+.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~~~~~~~~~DiwSlGvilyell~G~~Pf~-~~~~~~~  252 (376)
T cd05598         181 DRCRLKPLERRRKRQHQRCLAHSLVGTPNYIA---P----EVLLRTGYTQLCDWWSVGVILYEMLVGQPPFL-ADTPAET  252 (376)
T ss_pred             ccccccchhhhhhhhcccccccccCCCccccC---H----HHHcCCCCCcceeeeeccceeeehhhCCCCCC-CCCHHHH
Confidence                              01124689999999   9    8887665554              88999999 7777777


Q ss_pred             HHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         105 YNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       105 ~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      ...+. .+.....+|  ..++.++.++|.+|+ .+|.+|++.  .++.++++||||++++|..+. ....+|++|.+..+
T Consensus       253 ~~~i~-~~~~~~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~--~t~~ell~h~~~~~~~~~~~~-~~~~~~~~~~~~~~  327 (376)
T cd05598         253 QLKVI-NWETTLHIPSQAKLSREASDLILRLC-CGAEDRLGK--NGADEIKAHPFFKGIDFASLI-RRQKAPYIPKITHP  327 (376)
T ss_pred             HHHHh-ccCccccCCCCCCCCHHHHHHHHHHh-cCHhhcCCC--CCHHHHhCCCCcCCCCHHHHh-hcCCCCCCCcCCCc
Confidence            66665 332334444  368999999999976 599999943  256999999999999999886 44567777776654


Q ss_pred             C
Q psy3184         183 R  183 (185)
Q Consensus       183 ~  183 (185)
                      .
T Consensus       328 ~  328 (376)
T cd05598         328 T  328 (376)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.84  E-value=5.5e-20  Score=152.02  Aligned_cols=161  Identities=22%  Similarity=0.415  Sum_probs=121.9

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccc
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ...+.||+.||+|||++     ||||+||+++.+  + .++|+|||++..+....  .....+||+.|||   |    |+
T Consensus       145 ~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~--~-~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~a---P----E~  214 (371)
T cd05622         145 RFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKS--G-HLKLADFGTCMKMNKEGMVRCDTAVGTPDYIS---P----EV  214 (371)
T ss_pred             HHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCC--C-CEEEEeCCceeEcCcCCcccccCcccCccccC---H----HH
Confidence            34578999999999998     899999999875  3 49999999998764332  2345789999999   9    77


Q ss_pred             hhccC----cce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC--CCCHHHHHHHHHHhhcCcCc
Q psy3184          81 IINVG----IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        81 ~~~~~----~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~--~~s~~~~~li~~~l~~dp~~  140 (185)
                      +....    |+.              ++|..||. +.+....+..+. .......+|.  .+|.+++++|.+||. +|..
T Consensus       215 l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~s~~~~~li~~~L~-~~~~  291 (371)
T cd05622         215 LKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFY-ADSLVGTYSKIM-NHKNSLTFPDDNDISKEAKNLICAFLT-DREV  291 (371)
T ss_pred             HhccCCCccCCCccceeehhHHHHHHHhCCCCCC-CCCHHHHHHHHH-cCCCcccCCCcCCCCHHHHHHHHHHcC-Chhh
Confidence            75432    322              88999999 888888888887 3323455553  589999999999997 6666


Q ss_pred             ccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         141 RLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       141 R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                      |++.  .+++++++|+||++..|.........+|++|.+.+..
T Consensus       292 r~~r--~~~~ei~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (371)
T cd05622         292 RLGR--NGVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDI  332 (371)
T ss_pred             hcCC--CCHHHHhcCcccCCCChhHHhcCCCCCCCCCCCCCcc
Confidence            6532  3789999999999877765545556778787765443

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.83  E-value=8.8e-20  Score=148.38  Aligned_cols=159  Identities=26%  Similarity=0.486  Sum_probs=117.9

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccc
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.   .++|+|||++.......  .....+||+.|+|   |    |+
T Consensus       105 ~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~---~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~a---P----E~  174 (332)
T cd05623         105 RFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNG---HIRLADFGSCLKLMEDGTVQSSVAVGTPDYIS---P----EI  174 (332)
T ss_pred             HHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCC---CEEEeecchheecccCCcceecccccCccccC---H----HH
Confidence            34578999999999998     8999999998753   39999999987553322  2234689999999   9    76


Q ss_pred             hhc-----cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC---CCCCHHHHHHHHHHhhcCc
Q psy3184          81 IIN-----VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP---KHVTRTAQSLIKALCKESP  138 (185)
Q Consensus        81 ~~~-----~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p---~~~s~~~~~li~~~l~~dp  138 (185)
                      +..     ..|+.              ++|..||. +.+..+.+..+. .......+|   ..++.++++||++||..++
T Consensus       175 ~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~-~~~~~~~~~~i~-~~~~~~~~p~~~~~~s~~~~~li~~ll~~~~  252 (332)
T cd05623         175 LQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFY-AESLVETYGKIM-NHKERFQFPAQVTDVSEDAKDLIRRLICSRE  252 (332)
T ss_pred             HhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCC-CCCHHHHHHHHh-CCCccccCCCccccCCHHHHHHHHHHccChh
Confidence            541     12322              88999999 888888888887 332334455   3579999999999997644


Q ss_pred             CcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         139 AERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       139 ~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                      . |++  +.++++++.||||++++|..+...  .+|++|...++.
T Consensus       253 ~-r~~--r~~~~~~~~h~~f~~~~~~~~~~~--~~~~~~~~~~~~  292 (332)
T cd05623         253 H-RLG--QNGIEDFKQHPFFTGIDWDNIRNC--EAPYIPEVSSPT  292 (332)
T ss_pred             h-hcC--CCCHHHHhCCCCcCCCCHHHHhhC--CCCccCCCCCCc
Confidence            4 332  127799999999999999988654  566677665544

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.83  E-value=3.8e-20  Score=144.95  Aligned_cols=143  Identities=38%  Similarity=0.698  Sum_probs=116.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ...||+.||.|+|++     +++|+||+++.+.   .++++|||.+.............|++.|++   |    |.+...
T Consensus        98 ~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~---~~~l~df~~~~~~~~~~~~~~~~~~~~~~~---P----E~~~~~  167 (262)
T cd05572          98 YIACVVLAFEYLHNRGIIYRDLKPENLLLDSNG---YVKLVDFGFAKKLKSGQKTWTFCGTPEYVA---P----EIILNK  167 (262)
T ss_pred             HHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCC---CEEEeeCCcccccCcccccccccCCcCccC---h----hHhcCC
Confidence            467899999999998     7899999998853   499999999987755444455688999999   9    776554


Q ss_pred             Ccce--------------eccCCCCCCCCC--hHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMND--PMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~--~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      .++.              ++|..||. ..+  .......+. .+.....+|...+.++.++|.+||..+|.+|++.+..+
T Consensus       168 ~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~  245 (262)
T cd05572         168 GYDFSVDYWSLGILLYELLTGRPPFG-EDDEDPMEIYNDIL-KGNGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGG  245 (262)
T ss_pred             CCCChhhhhhhHHHHHHHHhCCCCcC-CCCCCHHHHHHHHh-ccCCCCCCCcccCHHHHHHHHHHccCChhhCcCCcccC
Confidence            4433              88999998 555  566666666 34457788888899999999999999999999877778


Q ss_pred             hhhhhcCCCCCCCChh
Q psy3184         149 IVDIKKHKWFQGFDWD  164 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~  164 (185)
                      ++++++||||++.+|.
T Consensus       246 ~~~l~~~~~~~~~~~~  261 (262)
T cd05572         246 IKDIKKHKWFNGFDWE  261 (262)
T ss_pred             HHHHhcChhhhCCCCC
Confidence            9999999999999885

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>KOG4236|consensus

Probab=99.83  E-value=1.4e-20  Score=157.03  Aligned_cols=153  Identities=18%  Similarity=0.325  Sum_probs=124.0

Q ss_pred             hhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccc
Q psy3184           6 LKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         6 ~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      +-++--+||+.||.|||.+     ||||+|+|+.+...--.+||+|||+++.++......+.+|||.|+|   |    |+
T Consensus       665 ~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFRrsVVGTPAYLa---P----EV  737 (888)
T KOG4236|consen  665 ITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLA---P----EV  737 (888)
T ss_pred             HHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhhhhhhhcCCccccC---H----HH
Confidence            3345578999999999987     8999999998764434599999999999998888889999999999   9    99


Q ss_pred             hhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCccc
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                      +..++|+.              ++|..||+++.+..+.+++.      .+-||    ..+|.++.|||+.+|+..-.+|+
T Consensus       738 LrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQIQNA------aFMyPp~PW~eis~~AidlIn~LLqVkm~kRy  811 (888)
T KOG4236|consen  738 LRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQIQNA------AFMYPPNPWSEISPEAIDLINNLLQVKMRKRY  811 (888)
T ss_pred             HhhccccccccceeeeEEEEEEecccccCCCccchhHHhhcc------ccccCCCchhhcCHHHHHHHHHHHHHHHHHhc
Confidence            99999886              99999998666665554443      34444    46899999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCC-Chhhhhccc--CCCCcc
Q psy3184         143 GYQRGGIVDIKKHKWFQGF-DWDGLRNQT--LTPPII  176 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~~-~~~~~~~~~--~~~p~~  176 (185)
                           +++..+.|||+++. .|.+|..-+  +.+.|+
T Consensus       812 -----svdk~lsh~Wlq~yq~w~DLRelE~~igeRyi  843 (888)
T KOG4236|consen  812 -----SVDKSLSHPWLQDYQTWLDLRELEVRIGERYI  843 (888)
T ss_pred             -----chHhhccchhhhcchHHHHHHHHHHhhCccee
Confidence                 77999999999875 477764432  445443

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.82  E-value=4.1e-20  Score=156.08  Aligned_cols=140  Identities=19%  Similarity=0.289  Sum_probs=106.2

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||+|||+.     ||||+||+++.+.  ..++|+|||+++.+..+......+||+.|+|   |    |++.+
T Consensus       174 ~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~--~~vkL~DFGla~~~~~~~~~~~~~~t~~y~a---P----E~~~~  244 (440)
T PTZ00036        174 LYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNT--HTLKLCDFGSAKNLLAGQRSVSYICSRFYRA---P----ELMLG  244 (440)
T ss_pred             HHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCC--CceeeeccccchhccCCCCcccCCCCcCccC---H----HHhcC
Confidence            4467999999999997     8999999998642  2489999999987765555556789999999   9    87654


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CC-------------Cc------------cCCCCCC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI-------------DK------------IPFPKHV  122 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~-------------~~------------~~~p~~~  122 (185)
                      . .|+.              ++|.+||. +.+..+.+..+... +.             ..            ..+|...
T Consensus       245 ~~~~~~~~DiwSlGvil~elltG~~pf~-~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~  323 (440)
T PTZ00036        245 ATNYTTHIDLWSLGCIIAEMILGYPIFS-GQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGT  323 (440)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCC
Confidence            3 4543              88999998 76655544443310 00             00            1234457


Q ss_pred             CHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCCh
Q psy3184         123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW  163 (185)
Q Consensus       123 s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~  163 (185)
                      +.++++||.+||.+||.+|+     ++.+++.||||+.+..
T Consensus       324 ~~~~~~li~~~L~~dP~~R~-----ta~e~l~hp~f~~~~~  359 (440)
T PTZ00036        324 PDDAINFISQFLKYEPLKRL-----NPIEALADPFFDDLRD  359 (440)
T ss_pred             CHHHHHHHHHHCCCChhHCc-----CHHHHhCChhHHhhhc
Confidence            89999999999999999999     6699999999987544

>KOG0593|consensus

Probab=99.82  E-value=1.6e-20  Score=147.45  Aligned_cols=137  Identities=18%  Similarity=0.298  Sum_probs=106.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .-.|++.|+.|||++     ||||+||+|..+.   .+||+|||+++.+. .+...+.++.|.+|.|   |    |++.+
T Consensus       106 ~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~g---vvKLCDFGFAR~L~~pgd~YTDYVATRWYRa---P----ELLvG  175 (396)
T KOG0593|consen  106 YLYQLLKAIHFCHKNNCIHRDIKPENILITQNG---VVKLCDFGFARTLSAPGDNYTDYVATRWYRA---P----ELLVG  175 (396)
T ss_pred             HHHHHHHHhhhhhhcCeecccCChhheEEecCC---cEEeccchhhHhhcCCcchhhhhhhhhhccC---h----hhhcc
Confidence            457999999999998     8999999999863   39999999999886 6667778999999999   9    98887


Q ss_pred             -cCcce--------------eccCCCCCCCCChHHHHHHHHhcCC---------------CccCCC------------CC
Q psy3184          84 -VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI---------------DKIPFP------------KH  121 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~---------------~~~~~p------------~~  121 (185)
                       ..|+.              ++|.+-|.+.++..+++.-...-|.               ..+.+|            ..
T Consensus       176 DtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~  255 (396)
T KOG0593|consen  176 DTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPK  255 (396)
T ss_pred             cCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhccc
Confidence             56665              8999999934444444422211110               011333            24


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      +|.-+.||+++||..||++|+++     ++++.|+||.++
T Consensus       256 ~s~~~ld~~k~cL~~dP~~R~sc-----~qll~H~yFd~~  290 (396)
T KOG0593|consen  256 ISNVLLDLLKKCLKMDPDDRLSC-----EQLLHHPYFDGF  290 (396)
T ss_pred             chHHHHHHHHHHhcCCccccccH-----HHHhcChHHHHH
Confidence            68889999999999999999966     999999999654

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.82  E-value=2.5e-19  Score=145.70  Aligned_cols=159  Identities=26%  Similarity=0.501  Sum_probs=118.8

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCcccccc
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ...+.|++.||+|||++     ||||+||+++.+.   .++|+|||++........  ....+||+.|+|   |    |+
T Consensus       105 ~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~---~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~a---P----E~  174 (331)
T cd05624         105 RFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNG---HIRLADFGSCLKMNQDGTVQSSVAVGTPDYIS---P----EI  174 (331)
T ss_pred             HHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCC---CEEEEeccceeeccCCCceeeccccCCcccCC---H----HH
Confidence            44578999999999997     8999999998753   399999999976644322  234679999999   9    76


Q ss_pred             hhc-----cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC---CCCHHHHHHHHHHhhcCc
Q psy3184          81 IIN-----VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK---HVTRTAQSLIKALCKESP  138 (185)
Q Consensus        81 ~~~-----~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~---~~s~~~~~li~~~l~~dp  138 (185)
                      +..     ..++.              ++|..||. +.+..+.+..+. .....+.+|.   .++.+++++|.+||..++
T Consensus       175 ~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~-~~~~~~~~~~i~-~~~~~~~~p~~~~~~~~~~~~li~~ll~~~~  252 (331)
T cd05624         175 LQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFY-AESLVETYGKIM-NHEERFQFPSHITDVSEEAKDLIQRLICSRE  252 (331)
T ss_pred             HhccccCCCCCCCcccEEeeehhhhhhhhCCCCcc-CCCHHHHHHHHH-cCCCcccCCCccccCCHHHHHHHHHHccCch
Confidence            643     12222              89999999 888888887777 3323445554   368999999999998644


Q ss_pred             CcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         139 AERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       139 ~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                       +|+.  +.+++++++||||++++|..+..  +.+|++|...++.
T Consensus       253 -~~~~--~~~~~~~~~h~~f~~~~~~~~~~--~~~~~~p~~~~~~  292 (331)
T cd05624         253 -RRLG--QNGIEDFKKHAFFEGIDWENIRN--LEAPYIPDVSSPS  292 (331)
T ss_pred             -hhcC--CCCHHHHhcCCCcCCCCHHHHhh--CCCCccCCCCCcc
Confidence             4542  23789999999999999998754  4677777766544

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.81  E-value=2.3e-19  Score=142.27  Aligned_cols=154  Identities=21%  Similarity=0.374  Sum_probs=119.0

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.|++.|++|||+.     |++|+||+++.+.   .++++|||.+...... .....+|+..|+|   |    |++..
T Consensus       101 ~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~---~~kl~dfg~~~~~~~~-~~~~~~~~~~y~a---P----E~~~~  169 (278)
T cd05606         101 FYAAEIILGLEHMHNRFVVYRDLKPANILLDEHG---HVRISDLGLACDFSKK-KPHASVGTHGYMA---P----EVLQK  169 (278)
T ss_pred             HHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCC---CEEEccCcCccccCcc-CCcCcCCCcCCcC---c----HHhcC
Confidence            3578999999999987     7999999998753   3899999998755332 2335689999999   9    77653


Q ss_pred             c-Ccce--------------eccCCCCCCCC---ChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMN---DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~---~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      . .++.              ++|..||. ..   +.......+.   ...+.+|..+|.++.+++.+||..+|.+|+.+.
T Consensus       170 ~~~~~~~~Di~s~G~~l~~l~~g~~p~~-~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~  245 (278)
T cd05606         170 GVAYDSSADWFSLGCMLFKLLRGHSPFR-QHKTKDKHEIDRMTL---TMAVELPDSFSPELRSLLEGLLQRDVNRRLGCL  245 (278)
T ss_pred             CCCCCcccchHhHHHHHHHHHhCCCCCC-CCCccchHHHHHHhh---ccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCC
Confidence            2 2332              88999997 44   3333333333   235677778899999999999999999999776


Q ss_pred             CCChhhhhcCCCCCCCChhhhhcccCCCCccC
Q psy3184         146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP  177 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p  177 (185)
                      ..++++++.||||+..+|..+..++.+++-+|
T Consensus       246 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  277 (278)
T cd05606         246 GRGAQEVKEHPFFRSLDWQMVFLQKYPPPLIP  277 (278)
T ss_pred             CCCHHHHHhCccccCCCchHhhhcccCCCCCC
Confidence            66789999999999999999988876666544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.81  E-value=2.3e-19  Score=144.40  Aligned_cols=156  Identities=26%  Similarity=0.468  Sum_probs=118.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---------------------------
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---------------------------   57 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---------------------------   57 (185)
                      .+.|++.||.|||+.     ||||+||+++.+.   +++|.|||++.......                           
T Consensus       108 ~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (316)
T cd05574         108 YAAEVLLALEYLHLLGIVYRDLKPENILLHESG---HIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEE  184 (316)
T ss_pred             HHHHHHHHHHHHHHCCeeccCCChHHeEEcCCC---CEEEeecchhhcccccccccccccccccccccccccchhhhccc
Confidence            367999999999998     7899999998853   38999999876443211                           


Q ss_pred             ---ccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC
Q psy3184          58 ---ILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK  120 (185)
Q Consensus        58 ---~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~  120 (185)
                         ....+.|+..|+|   |    |++.+..++.              ++|..||. +.+....+..+.   .....+|.
T Consensus       185 ~~~~~~~~~g~~~y~a---P----E~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~-~~~~~~~~~~~~---~~~~~~~~  253 (316)
T cd05574         185 PSFRSNSFVGTEEYIA---P----EVISGDGHGSAVDWWTLGILLYEMLYGTTPFK-GSNRDETFSNIL---KKEVTFPG  253 (316)
T ss_pred             ccCCCCCCcCccCCcC---H----HHHcCCCCCchHHHHHHHHHHHHHhhCCCCCC-CCchHHHHHHHh---cCCccCCC
Confidence               1123578899999   9    8776554443              88999998 777777776666   23445554


Q ss_pred             C--CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         121 H--VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       121 ~--~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      .  ++.++.++|.+||..||.+||+. ..++++++.||||++++|....-.  +||-+|++...
T Consensus       254 ~~~~~~~~~~li~~~l~~~p~~R~s~-~~~~~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~~~  314 (316)
T cd05574         254 SPPVSSSARDLIRKLLVKDPSKRLGS-KRGAAEIKQHPFFRGVNWALIRHT--TPPIIPRPDDG  314 (316)
T ss_pred             ccccCHHHHHHHHHHccCCHhHCCCc-hhhHHHHHcCchhhcCChhhcccC--CCCCCCCcccc
Confidence            3  79999999999999999999952 112799999999999999987663  56666766544

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.80  E-value=6.5e-19  Score=143.30  Aligned_cols=159  Identities=26%  Similarity=0.504  Sum_probs=116.5

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCcccccc
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      +....||+.||+|||++     ||||+||+++.+.   .++|+|||.+..+.....  ....+||+.|||   |    |+
T Consensus       105 ~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~a---P----E~  174 (331)
T cd05597         105 RFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNG---HIRLADFGSCLRLLADGTVQSNVAVGTPDYIS---P----EI  174 (331)
T ss_pred             HHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCC---CEEEEECCceeecCCCCCccccceeccccccC---H----HH
Confidence            34578999999999998     8999999998753   399999999876543322  223579999999   9    77


Q ss_pred             hhc-----cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC---CCCCHHHHHHHHHHhhcCc
Q psy3184          81 IIN-----VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP---KHVTRTAQSLIKALCKESP  138 (185)
Q Consensus        81 ~~~-----~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p---~~~s~~~~~li~~~l~~dp  138 (185)
                      +..     ..++.              ++|..||. +.+..+.+..+. .......+|   ..++.++++||++||.. |
T Consensus       175 ~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~li~~ll~~-~  251 (331)
T cd05597         175 LQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFY-AESLVETYGKIM-NHKEHFQFPPDVTDVSEEAKDLIRRLICS-P  251 (331)
T ss_pred             HhhccccccCCCCcceeehhhhHHHHHhhCCCCCC-CCCHHHHHHHHH-cCCCcccCCCccCCCCHHHHHHHHHHccC-c
Confidence            652     11221              88999999 888778777776 322334444   34799999999999875 4


Q ss_pred             CcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         139 AERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       139 ~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                      .+|++.  .++++++.||||.+.+|..+...  .+|+.|...+..
T Consensus       252 ~~r~~r--~~~~~~l~hp~~~~~~~~~~~~~--~~~~~~~~~~~~  292 (331)
T cd05597         252 ETRLGR--NGLQDFKDHPFFEGIDWDNIRNS--TAPYVPEVSSPT  292 (331)
T ss_pred             ccccCC--CCHHHHhcCCCCCCCCHHHHhhC--CCCccCcCCCcc
Confidence            444321  27799999999999999987653  567777665543

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0579|consensus

Probab=99.80  E-value=1.7e-19  Score=153.30  Aligned_cols=140  Identities=21%  Similarity=0.292  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchh--
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMII--   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~--   82 (185)
                      -.|++.||.|||++     |||.+|||++-+  | .|+|+|||.+..... .....+++|||+|||   |    |+..  
T Consensus       136 c~q~ldALn~LHs~~iIHRDLKAGNiL~Tld--G-dirLADFGVSAKn~~t~qkRDsFIGTPYWMA---P----EVvmCE  205 (1187)
T KOG0579|consen  136 CYQVLDALNWLHSQNIIHRDLKAGNILLTLD--G-DIRLADFGVSAKNKSTRQKRDSFIGTPYWMA---P----EVVMCE  205 (1187)
T ss_pred             HHHHHHHHHHHhhcchhhhhccccceEEEec--C-cEeeecccccccchhHHhhhccccCCccccc---c----hheeec
Confidence            46889999999997     899999999986  3 399999998864433 245568999999999   9    6543  


Q ss_pred             ---ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          83 ---NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        83 ---~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                         ..+|++              .-+.+|.. ..+++.++-+|..+-...+..|..||..++||+++||.+||..||   
T Consensus       206 T~KD~PYDykaDiWSlGITLIEMAqiEPPHh-elnpMRVllKiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp---  281 (1187)
T KOG0579|consen  206 TFKDQPYDYKADIWSLGITLIEMAQIEPPHH-ELNPMRVLLKIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPRNRP---  281 (1187)
T ss_pred             cccCCCchhhhhHHhhhhHHHHHhccCCCcc-ccchHHHHHHHhhcCCCcccCcchhhhHHHHHHHHHHhcCCccCC---
Confidence               467776              56678888 888898888887433345567789999999999999999999999   


Q ss_pred             CCChhhhhcCCCCCCCChhhh
Q psy3184         146 RGGIVDIKKHKWFQGFDWDGL  166 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~~~~~~~  166 (185)
                        .+.+|+.||||++++-.++
T Consensus       282 --~aaqll~Hpfv~~~~SnK~  300 (1187)
T KOG0579|consen  282 --PAAQLLKHPFVQNAPSNKM  300 (1187)
T ss_pred             --CHHHHhhCcccccCCcchH
Confidence              5599999999998765543

>KOG0595|consensus

Probab=99.80  E-value=8.4e-20  Score=147.82  Aligned_cols=140  Identities=19%  Similarity=0.351  Sum_probs=119.6

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCC---CeeEEcccCceeEeecCcccccccCCccccccCCCccccc
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAG---NDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~---~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      +.-..||+.|+++||++     ||||+||||......   -.+||+|||+++.+..+....+.||+|.|||   |    |
T Consensus       112 r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~a~tlcGSplYMA---P----E  184 (429)
T KOG0595|consen  112 RHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSMAETLCGSPLYMA---P----E  184 (429)
T ss_pred             HHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhHHHHhhCCccccC---H----H
Confidence            44478999999999998     899999999875222   3589999999999999999999999999999   9    9


Q ss_pred             chhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCC-CccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          80 MIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI-DKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        80 ~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~-~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ++..+.|+.              ++|.+||. +.+..+++..+. .+. ..+.+|..+|.++.+++..++.+++..|.+.
T Consensus       185 V~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~-a~t~~eL~~~~~-k~~~~~~~~~~~~s~~~~~Ll~~ll~~~~~~~~~~  262 (429)
T KOG0595|consen  185 VIMSQQYDAKADLWSIGTILYQCLTGKPPFD-AETPKELLLYIK-KGNEIVPVLPAELSNPLRELLISLLQRNPKDRISF  262 (429)
T ss_pred             HHHhccccchhhHHHHHHHHHHHHhCCCCcc-ccCHHHHHHHHh-ccccccCchhhhccCchhhhhhHHHhcCccccCch
Confidence            998888887              99999999 999999998887 443 3445557789999999999999999999955


Q ss_pred             CCCChhhhhcCCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~  161 (185)
                           .+.+.|++...-
T Consensus       263 -----~~~~~~~~l~~~  274 (429)
T KOG0595|consen  263 -----EDFFDHPFLAAN  274 (429)
T ss_pred             -----HHhhhhhhcccC
Confidence                 888889887543

>KOG0201|consensus

Probab=99.80  E-value=2.8e-20  Score=151.67  Aligned_cols=136  Identities=20%  Similarity=0.310  Sum_probs=114.6

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ....+++.|+.|+|..     |||+.||++..+  + +++|.|||.+..+... ....+++|||.|||   |    |++.
T Consensus       115 ~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~--g-~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMA---P----EVI~  184 (467)
T KOG0201|consen  115 VILREVLKGLDYLHSEKKIHRDIKAANILLSES--G-DVKLADFGVAGQLTNTVKRRKTFVGTPFWMA---P----EVIK  184 (467)
T ss_pred             eehHHHHHHhhhhhhcceecccccccceeEecc--C-cEEEEecceeeeeechhhccccccccccccc---h----hhhc
Confidence            3467899999999987     899999999986  3 4999999999877554 33478999999999   9    9999


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +.+|+.              ..|.+|+. ...++.....|..  ..++.+...+|+.+++||..||.+||+.||     +
T Consensus       185 ~~~Y~~KADIWSLGITaiEla~GePP~s-~~hPmrvlflIpk--~~PP~L~~~~S~~~kEFV~~CL~k~P~~Rp-----s  256 (467)
T KOG0201|consen  185 QSGYDTKADIWSLGITAIELAKGEPPHS-KLHPMRVLFLIPK--SAPPRLDGDFSPPFKEFVEACLDKNPEFRP-----S  256 (467)
T ss_pred             cccccchhhhhhhhHHHHHHhcCCCCCc-ccCcceEEEeccC--CCCCccccccCHHHHHHHHHHhhcCcccCc-----C
Confidence            888887              89999999 7777776666663  245666678999999999999999999999     6


Q ss_pred             hhhhhcCCCCCCCC
Q psy3184         149 IVDIKKHKWFQGFD  162 (185)
Q Consensus       149 ~~~ll~hp~f~~~~  162 (185)
                      |.+|++|+|++...
T Consensus       257 A~~LLKh~FIk~a~  270 (467)
T KOG0201|consen  257 AKELLKHKFIKRAK  270 (467)
T ss_pred             HHHHhhhHHHHhcC
Confidence            69999999998743

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.80  E-value=2.8e-19  Score=147.08  Aligned_cols=151  Identities=19%  Similarity=0.262  Sum_probs=109.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.||+|||++     ||||+||+++.+.   .++|+|||.++............||+.|+|   |    |++.+.
T Consensus       131 ~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~---~~kL~DfG~a~~~~~~~~~~~~~~t~~y~a---P----E~~~~~  200 (364)
T cd07875         131 LLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC---TLKILDFGLARTAGTSFMMTPYVVTRYYRA---P----EVILGM  200 (364)
T ss_pred             HHHHHHHHHHHHhhCCeecCCCCHHHEEECCCC---cEEEEeCCCccccCCCCcccCCcccCCcCC---H----HHHhCC
Confidence            468999999999997     7999999998853   499999999987655544556789999999   9    887766


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCC-------------------cc--------------C
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID-------------------KI--------------P  117 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~-------------------~~--------------~  117 (185)
                      .++.              ++|..||. +.+....+..+...-..                   .+              .
T Consensus       201 ~~~~~~DiwSlG~il~ell~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (364)
T cd07875         201 GYKENVDIWSVGCIMGEMIKGGVLFP-GTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVL  279 (364)
T ss_pred             CCCchhhHHhHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCcccc
Confidence            6554              88999998 77766555544310000                   00              0


Q ss_pred             CC------CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCC
Q psy3184         118 FP------KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPV  178 (185)
Q Consensus       118 ~p------~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~  178 (185)
                      +|      ...+.++++||.+||..||.+||     ++++++.||||.  .|.........+|.+|.
T Consensus       280 ~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~-----t~~e~L~hp~~~--~~~~~~~~~~~~~~~~~  339 (364)
T cd07875         280 FPADSEHNKLKASQARDLLSKMLVIDASKRI-----SVDEALQHPYIN--VWYDPSEAEAPPPKIPD  339 (364)
T ss_pred             ccccccccccccHHHHHHHHHhcCcCcccCC-----CHHHHhcCcccc--cccCcccCCCCCCCCCC
Confidence            01      12357899999999999999999     669999999996  35544444434444443

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0582|consensus

Probab=99.80  E-value=2.8e-19  Score=146.32  Aligned_cols=140  Identities=19%  Similarity=0.316  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe-ecCc----ccccccCCccccccCCCcccccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI-KDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~-~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      -.|++.||+|||++     |+|++||||+++.   .|+|+|||....+ +.+.    ...+++|||.|||   |    |+
T Consensus       132 Lre~LkaL~YLH~~G~IHRdvKAgnILi~~dG---~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmA---P----Ev  201 (516)
T KOG0582|consen  132 LREVLKALDYLHQNGHIHRDVKAGNILIDSDG---TVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMA---P----EV  201 (516)
T ss_pred             HHHHHHHHHHHHhcCceecccccccEEEcCCC---cEEEcCceeeeeecccCceeeEeeccccCcccccC---h----HH
Confidence            45889999999998     8999999999974   3999999987654 3221    1256799999999   9    87


Q ss_pred             hhc--cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCcc-----CCC----CCCCHHHHHHHHHHhh
Q psy3184          81 IIN--VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKI-----PFP----KHVTRTAQSLIKALCK  135 (185)
Q Consensus        81 ~~~--~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~-----~~p----~~~s~~~~~li~~~l~  135 (185)
                      +.+  .+|+.              ..|..||. ...+.+++-.-. .+ .++     .++    ..++..++.+|..||.
T Consensus       202 l~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~-k~pPmkvLl~tL-qn-~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~  278 (516)
T KOG0582|consen  202 LMQQLHGYDFKADIWSFGITACELAHGHAPFS-KYPPMKVLLLTL-QN-DPPTLLTSGLDKDEDKKFSKSFREMIALCLV  278 (516)
T ss_pred             hhhcccCccchhhhhhhhHHHHHHhcCCCCcc-cCChHHHHHHHh-cC-CCCCcccccCChHHhhhhcHHHHHHHHHHhh
Confidence            654  46665              89999999 777777665555 22 232     222    3478899999999999


Q ss_pred             cCcCcccCCCCCChhhhhcCCCCCCCChhhhhc
Q psy3184         136 ESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRN  168 (185)
Q Consensus       136 ~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~  168 (185)
                      +||.+||     ++.++++|+||+...-.....
T Consensus       279 kDP~kRp-----tAskLlkh~FFk~~k~~~~~~  306 (516)
T KOG0582|consen  279 KDPSKRP-----TASKLLKHAFFKKAKSKEYLV  306 (516)
T ss_pred             cCcccCC-----CHHHHhccHHHhhccchhhcc
Confidence            9999999     669999999998775444433

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.80  E-value=3.8e-19  Score=141.34  Aligned_cols=133  Identities=14%  Similarity=0.209  Sum_probs=102.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.+.............||+.|+|   |    |++...
T Consensus       115 i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  184 (290)
T cd07862         115 MMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSG---QIKLADFGLARIYSFQMALTSVVVTLWYRA---P----EVLLQS  184 (290)
T ss_pred             HHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCC---CEEEccccceEeccCCcccccccccccccC---h----HHHhCC
Confidence            478999999999998     8999999998853   399999999987765555556789999999   9    877655


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCC--CccC----------------------CCCCCCHHH
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI--DKIP----------------------FPKHVTRTA  126 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~--~~~~----------------------~p~~~s~~~  126 (185)
                      .++.              ++|.+||. +.+..+.+..+.....  ....                      +...++..+
T Consensus       185 ~~~~~~DiwslG~il~el~~g~~~f~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (290)
T cd07862         185 SYATPVDLWSVGCIFAEMFRRKPLFR-GSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELG  263 (290)
T ss_pred             CCCCccchHHHHHHHHHHHcCCCCcC-CCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHH
Confidence            5543              88999998 7766666655541100  0000                      112468899


Q ss_pred             HHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         127 QSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       127 ~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      ++|+.+||..||++||     ++.++++||||
T Consensus       264 ~~li~~~l~~~P~~R~-----s~~~~l~hp~f  290 (290)
T cd07862         264 KDLLLKCLTFNPAKRI-----SAYSALSHPYF  290 (290)
T ss_pred             HHHHHHHhccCchhcC-----CHHHHhcCCCC
Confidence            9999999999999999     66999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG4279|consensus

Probab=99.79  E-value=2.3e-19  Score=153.62  Aligned_cols=144  Identities=21%  Similarity=0.304  Sum_probs=115.7

Q ss_pred             chhhhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe-ecCcccccccCCccccccCCCcc
Q psy3184           3 NDFLKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI-KDGKILRLLSGRPPFCVMNDPMQ   76 (185)
Q Consensus         3 ~~~~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~-~~~~~~~~~~gt~~y~a~~~P~~   76 (185)
                      |+.-=.++..||++||.|||.+     |||.+|+||+.- .| .+|++|||-++.+ +-+-++.++.||..|||   |  
T Consensus       673 NEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTy-SG-vlKISDFGTsKRLAginP~TETFTGTLQYMA---P--  745 (1226)
T KOG4279|consen  673 NESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTY-SG-VLKISDFGTSKRLAGINPCTETFTGTLQYMA---P--  745 (1226)
T ss_pred             chhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeec-cc-eEEecccccchhhccCCccccccccchhhhC---h--
Confidence            4555567899999999999998     899999999873 24 3899999999866 44667889999999999   9  


Q ss_pred             cccchhcc--Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCc
Q psy3184          77 TYNMIINV--GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        77 ~~E~~~~~--~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~  140 (185)
                        |++...  +|+.              .+|++||.+-.+++.-..++- --...+.+|..+|.++++||.+|+..||.+
T Consensus       746 --EvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVG-myKvHP~iPeelsaeak~FilrcFepd~~~  822 (1226)
T KOG4279|consen  746 --EVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVG-MYKVHPPIPEELSAEAKNFILRCFEPDPCD  822 (1226)
T ss_pred             --HhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhhc-ceecCCCCcHHHHHHHHHHHHHHcCCCccc
Confidence              998763  5654              899999985444443332221 012578999999999999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCC
Q psy3184         141 RLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       141 R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      ||     ++.++|..||++.-
T Consensus       823 R~-----sA~~LL~DpFlq~~  838 (1226)
T KOG4279|consen  823 RP-----SAKDLLQDPFLQHN  838 (1226)
T ss_pred             Cc-----cHHHhccCcccccC
Confidence            99     66999999999754

>KOG0586|consensus

Probab=99.79  E-value=7.8e-20  Score=154.09  Aligned_cols=137  Identities=20%  Similarity=0.311  Sum_probs=124.7

Q ss_pred             hhhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCccccc
Q psy3184           5 FLKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         5 ~~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      ..++-.-.|++.|++|||++     |||++|++++.+.   |++++|||++..+..+....++||++.|.|   |    |
T Consensus       155 ~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~m---nikIaDfgfS~~~~~~~~lqt~cgsppyAa---P----E  224 (596)
T KOG0586|consen  155 KEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENM---NIKIADFGFSTFFDYGLMLQTFCGSPPYAA---P----E  224 (596)
T ss_pred             hhhhhhhHHHHHHHHHHhhcceeccccchhhccccccc---ceeeeccccceeecccccccccCCCCCccC---h----H
Confidence            66777788999999999998     8999999999964   599999999999998889999999999999   9    9


Q ss_pred             chhccCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          80 MIINVGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        80 ~~~~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ++.+..|..               +.|..||. +.+..++....+ .|  .+.+|..+|.+++++|+++|..+|.+|+++
T Consensus       225 l~~g~~y~gpe~D~Wslgvvly~LV~GsLPFD-G~~lk~Lr~rvl-~g--k~rIp~~ms~dce~lLrk~lvl~Pskr~~~  300 (596)
T KOG0586|consen  225 LFNGKKYDGPEVDIWSLGVVLYALVEGSLPFD-GQNLKELRPRVL-RG--KYRIPFYMSCDCEDLLRKFLVLNPSKRGPC  300 (596)
T ss_pred             hhcCcccCCcceehhhhhhhheeeeecccccC-Ccccccccchhe-ee--eecccceeechhHHHHHHhhccCccccCCH
Confidence            999888776               89999999 999999988888 44  899999999999999999999999999955


Q ss_pred             CCCChhhhhcCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQG  160 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~  160 (185)
                           ++++.|.|.-.
T Consensus       301 -----dqim~~~W~n~  311 (596)
T KOG0586|consen  301 -----DQIMKDRWRND  311 (596)
T ss_pred             -----HHhhhhcccch
Confidence                 99999999853

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.79  E-value=6.1e-19  Score=144.78  Aligned_cols=140  Identities=18%  Similarity=0.261  Sum_probs=102.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ...||+.||.|||++     ||||+||+++.+.   .++|+|||+++............||+.|+|   |    |++.+.
T Consensus       128 ~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~a---P----E~~~~~  197 (359)
T cd07876         128 LLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC---TLKILDFGLARTACTNFMMTPYVVTRYYRA---P----EVILGM  197 (359)
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCHHHEEECCCC---CEEEecCCCccccccCccCCCCcccCCCCC---c----hhccCC
Confidence            367999999999998     7999999998853   399999999976544444556789999999   9    877765


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcC-------------------CCccC--------------
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVG-------------------IDKIP--------------  117 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~-------------------~~~~~--------------  117 (185)
                      .|+.              ++|..||. +.+....+..+....                   .....              
T Consensus       198 ~~~~~~DiwSlG~il~el~tg~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (359)
T cd07876         198 GYKENVDIWSVGCIMGELVKGSVIFQ-GTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWI  276 (359)
T ss_pred             CCCcchhhHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhccccc
Confidence            5554              88999998 665443332221000                   00001              


Q ss_pred             CC------CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhh
Q psy3184         118 FP------KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLR  167 (185)
Q Consensus       118 ~p------~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~  167 (185)
                      +|      ...+.++++||.+||..||.+||     ++.+++.||||..  |....
T Consensus       277 ~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~-----t~~e~l~hp~~~~--~~~~~  325 (359)
T cd07876         277 FPSESERDKLKTSQARDLLSKMLVIDPDKRI-----SVDEALRHPYITV--WYDPA  325 (359)
T ss_pred             cccccccccccchhHHHHHHHHhccCcccCC-----CHHHHhcCchhhh--hcCcc
Confidence            11      12468899999999999999999     6699999999974  54433

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0584|consensus

Probab=99.79  E-value=1.8e-19  Score=152.31  Aligned_cols=133  Identities=20%  Similarity=0.335  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHhhc-------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184          11 TLQVKEMVESMHQA-------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      +-||+.||.|||++       |||.+||+|+++. |. +|+.|.|++.+... ....+.+|||.|||   |    |+.. 
T Consensus       149 ~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~-G~-VKIGDLGLAtl~r~-s~aksvIGTPEFMA---P----EmYE-  217 (632)
T KOG0584|consen  149 CRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNL-GE-VKIGDLGLATLLRK-SHAKSVIGTPEFMA---P----EMYE-  217 (632)
T ss_pred             HHHHHHHhhhhhcCCCCccccccccceEEEcCCc-Cc-eeecchhHHHHhhc-cccceeccCccccC---h----HHHh-
Confidence            67999999999998       8999999999975 43 99999999986643 34455899999999   9    8876 


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..|+-              .++.+||+++.++.++|.++. +|..+-.+-.-=.+++++||.+||.. ...|+     ++
T Consensus       218 E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~-SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~-----sa  290 (632)
T KOG0584|consen  218 ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVT-SGIKPAALSKVKDPEVREFIEKCLAT-KSERL-----SA  290 (632)
T ss_pred             hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHH-cCCCHHHhhccCCHHHHHHHHHHhcC-chhcc-----CH
Confidence            33443              899999998999999999999 77555555544579999999999998 88999     66


Q ss_pred             hhhhcCCCCCCC
Q psy3184         150 VDIKKHKWFQGF  161 (185)
Q Consensus       150 ~~ll~hp~f~~~  161 (185)
                      .+||.||||..-
T Consensus       291 ~eLL~d~Ff~~d  302 (632)
T KOG0584|consen  291 KELLKDPFFDED  302 (632)
T ss_pred             HHHhhChhhccc
Confidence            999999999763

>KOG0591|consensus

Probab=99.78  E-value=3.2e-19  Score=138.99  Aligned_cols=120  Identities=21%  Similarity=0.300  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHhhc---------CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccc
Q psy3184          11 TLQVKEMVESMHQA---------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        11 ~~qi~~~l~~lH~~---------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      -+|++.||.+||+.         ||||.||+++.+  | .+||.|||+++.+.... ...+++|||+||+   |    |.
T Consensus       130 f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~--g-vvKLGDfGL~r~l~s~~tfA~S~VGTPyYMS---P----E~  199 (375)
T KOG0591|consen  130 FVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTAN--G-VVKLGDFGLGRFLSSKTTFAHSLVGTPYYMS---P----ER  199 (375)
T ss_pred             HHHHHHHHHHHhccccccceeeccCcchheEEcCC--C-ceeeccchhHhHhcchhHHHHhhcCCCcccC---H----HH
Confidence            57999999999993         899999999985  3 49999999999776543 4567999999999   9    99


Q ss_pred             hhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC-CCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP-KHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p-~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                      +...+|+.              +.-++||. |.+.-++..+|. .| +.++.| +..|+++..||..|+..||..||+
T Consensus       200 i~~~~Y~~kSDiWslGCllyEMcaL~~PF~-g~n~~~L~~KI~-qg-d~~~~p~~~YS~~l~~li~~ci~vd~~~RP~  274 (375)
T KOG0591|consen  200 IHESGYNFKSDIWSLGCLLYEMCALQSPFY-GDNLLSLCKKIE-QG-DYPPLPDEHYSTDLRELINMCIAVDPEQRPD  274 (375)
T ss_pred             HhcCCCCcchhHHHHHHHHHHHHhcCCCcc-cccHHHHHHHHH-cC-CCCCCcHHHhhhHHHHHHHHHccCCcccCCC
Confidence            99999997              66689999 999999999999 44 444577 779999999999999999999995

>KOG0983|consensus

Probab=99.78  E-value=2.4e-18  Score=133.87  Aligned_cols=133  Identities=16%  Similarity=0.226  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ..-++.||.||..+      |+||.|||++..  | +||++|||++..+....-...-.|++.|||   |    |.+...
T Consensus       197 tva~v~AL~YLKeKH~viHRDvKPSNILlDe~--G-niKlCDFGIsGrlvdSkAhtrsAGC~~YMa---P----ERidp~  266 (391)
T KOG0983|consen  197 TVAIVKALYYLKEKHGVIHRDVKPSNILLDER--G-NIKLCDFGISGRLVDSKAHTRSAGCAAYMA---P----ERIDPP  266 (391)
T ss_pred             HHHHHHHHHHHHHhcceeecccCccceEEccC--C-CEEeecccccceeecccccccccCCccccC---c----cccCCC
Confidence            45677899999765      899999999983  4 599999999987766555555689999999   9    887643


Q ss_pred             ---Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC--CCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          85 ---GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        85 ---~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~--~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                         .|+-              .+|+.||.......+++.+|.+  ..++..|.  .+|+.+.+|+..||.+|+.+||.+ 
T Consensus       267 ~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln--~ePP~L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y-  343 (391)
T KOG0983|consen  267 DKPKYDIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLN--EEPPLLPGHMGFSPDFQSFVKDCLTKDHRKRPKY-  343 (391)
T ss_pred             CCCccchhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHh--cCCCCCCcccCcCHHHHHHHHHHhhcCcccCcch-
Confidence               3443              8999999944566788888884  34566663  489999999999999999999966 


Q ss_pred             CCChhhhhcCCCCCC
Q psy3184         146 RGGIVDIKKHKWFQG  160 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~  160 (185)
                          .+||+|||++.
T Consensus       344 ----~~Ll~h~Fi~~  354 (391)
T KOG0983|consen  344 ----NKLLEHPFIKR  354 (391)
T ss_pred             ----HHHhcCcceee
Confidence                99999999854

>KOG0611|consensus

Probab=99.78  E-value=3.7e-19  Score=144.67  Aligned_cols=128  Identities=23%  Similarity=0.376  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhccC
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVG   85 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~~   85 (185)
                      .-||+.|+.|||++     |||.+|||++.+   +|++++|||++.+...+....++||+|-|.+   |    |++++.+
T Consensus       159 FRQIvSAVhYCHknrVvHRDLKLENILLD~N---~NiKIADFGLSNly~~~kfLqTFCGSPLYAS---P----EIvNG~P  228 (668)
T KOG0611|consen  159 FRQIVSAVHYCHKNRVVHRDLKLENILLDQN---NNIKIADFGLSNLYADKKFLQTFCGSPLYAS---P----EIVNGTP  228 (668)
T ss_pred             HHHHHHHHHHHhhccceecccchhheeecCC---CCeeeeccchhhhhccccHHHHhcCCcccCC---c----cccCCCC
Confidence            46999999999998     899999999985   3699999999999888889999999999999   9    9999988


Q ss_pred             cce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          86 IDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        86 ~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      |..               .+|..||. |.+...+...|. +|  .+.-|.. +.++..||+.||+.||.+|-     +++
T Consensus       229 Y~GPEVDsWsLGvLLYtLVyGtMPFD-G~Dhk~lvrQIs-~G--aYrEP~~-PSdA~gLIRwmLmVNP~RRA-----Tie  298 (668)
T KOG0611|consen  229 YKGPEVDSWSLGVLLYTLVYGTMPFD-GRDHKRLVRQIS-RG--AYREPET-PSDASGLIRWMLMVNPERRA-----TIE  298 (668)
T ss_pred             CCCCccchhhHHHHHHHHhhcccccC-CchHHHHHHHhh-cc--cccCCCC-CchHHHHHHHHHhcCcccch-----hHH
Confidence            876               89999999 999999999999 55  4544433 56789999999999999999     669


Q ss_pred             hhhcCCCC
Q psy3184         151 DIKKHKWF  158 (185)
Q Consensus       151 ~ll~hp~f  158 (185)
                      ++..|=|.
T Consensus       299 DiAsHWWv  306 (668)
T KOG0611|consen  299 DIASHWWV  306 (668)
T ss_pred             HHhhhhee
Confidence            99999886

>KOG0661|consensus

Probab=99.78  E-value=8.9e-19  Score=144.27  Aligned_cols=136  Identities=19%  Similarity=0.262  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhccC
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVG   85 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~~   85 (185)
                      ..||+.||.|+|.+     |+||+||||.+..   .|||+|||+++.+......+.++.|..|.|   |    |++...+
T Consensus       116 m~QilqGL~hiHk~GfFHRDlKPENiLi~~~~---~iKiaDFGLARev~SkpPYTeYVSTRWYRA---P----EvLLrs~  185 (538)
T KOG0661|consen  116 MYQILQGLAHIHKHGFFHRDLKPENILISGND---VIKIADFGLAREVRSKPPYTEYVSTRWYRA---P----EVLLRSG  185 (538)
T ss_pred             HHHHHHHHHHHHhcCcccccCChhheEecccc---eeEecccccccccccCCCcchhhhcccccc---h----HHhhhcc
Confidence            67999999999998     8999999999632   599999999999887777778999999999   9    9888765


Q ss_pred             cce---------------eccCCCCCCCCChHHHHHHHHhc-CC---------------CccCCC-----------CCCC
Q psy3184          86 IDN---------------IFSRPPFCVMNDPMQTYNMIINV-GI---------------DKIPFP-----------KHVT  123 (185)
Q Consensus        86 ~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~-~~---------------~~~~~p-----------~~~s  123 (185)
                      |..               .+-++-|. |.+..+.+.+|... |.               -.+.+|           ..++
T Consensus       186 ~Ys~pvD~wA~GcI~aEl~sLrPLFP-G~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s  264 (538)
T KOG0661|consen  186 YYSSPVDMWAVGCIMAELYSLRPLFP-GASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNAS  264 (538)
T ss_pred             ccCCchHHHHHHHHHHHHHHhcccCC-CCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCcccC
Confidence            443               44567788 76665555554311 10               022333           2478


Q ss_pred             HHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCC
Q psy3184         124 RTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       124 ~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~  162 (185)
                      .++.++|.+||..||.+||     +|.++++||||+...
T Consensus       265 ~~~~~li~~ll~WDP~kRp-----TA~~al~~pffq~~~  298 (538)
T KOG0661|consen  265 SEAASLIERLLAWDPDKRP-----TASQALQHPFFQVGR  298 (538)
T ss_pred             HHHHHHHHHHhcCCCccCc-----cHHHHhcCccccccc
Confidence            9999999999999999999     669999999997543

>KOG0658|consensus

Probab=99.78  E-value=8.7e-19  Score=140.22  Aligned_cols=140  Identities=22%  Similarity=0.345  Sum_probs=112.5

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +|++.||..|+.|||+.     ||||.|+|++.+. + .+||+|||.++.+..+....++..|..|.|   |    |++-
T Consensus       128 KLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~t-g-~LKicDFGSAK~L~~~epniSYicSRyYRa---P----ELif  198 (364)
T KOG0658|consen  128 KLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDT-G-VLKICDFGSAKVLVKGEPNISYICSRYYRA---P----ELIF  198 (364)
T ss_pred             HHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCC-C-eEEeccCCcceeeccCCCceeEEEeccccC---H----HHHc
Confidence            67899999999999997     8999999999963 4 499999999999998888888999999999   9    9887


Q ss_pred             c-cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CC-------------CccCCC------------CC
Q psy3184          83 N-VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI-------------DKIPFP------------KH  121 (185)
Q Consensus        83 ~-~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~-------------~~~~~p------------~~  121 (185)
                      + ..|+.              +.|++-|. |.+..+.+..|..- |.             ....+|            ..
T Consensus       199 ga~~Yt~~IDiWSaGCV~aELl~g~plFp-G~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~  277 (364)
T KOG0658|consen  199 GATEYTTSIDIWSAGCVMAELLKGQPLFP-GDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKR  277 (364)
T ss_pred             CccccCceeEEhhhhHHHHHHhcCCcccC-CCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecccC
Confidence            6 45665              88999999 77766554443310 10             011222            35


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~  162 (185)
                      .++++.+|+.++|..+|.+|.     ++.+++.||||..+.
T Consensus       278 ~~~d~~dll~~~L~Y~P~~R~-----~~~~~l~h~fFdelr  313 (364)
T KOG0658|consen  278 LPPDALDLLSKLLQYSPSKRL-----SALEALAHPFFDELR  313 (364)
T ss_pred             CCHHHHHHHHHHhccChhhcC-----CHHHHhcchhhHHhh
Confidence            789999999999999999999     669999999997553

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.77  E-value=6.8e-18  Score=135.44  Aligned_cols=158  Identities=26%  Similarity=0.445  Sum_probs=117.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----------------ccccccCCccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----------------ILRLLSGRPPF   68 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----------------~~~~~~gt~~y   68 (185)
                      ...|++.|+.|||+.     |++|.||+++.+  + .++++|||.++......                ......|+..|
T Consensus       106 ~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~--~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  182 (305)
T cd05609         106 YFAETVLALEYLHNYGIVHRDLKPDNLLITSM--G-HIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEY  182 (305)
T ss_pred             HHHHHHHHHHHHHHCCccccCCchHHEEECCC--C-CEEEeeCCCccccCcCccccccccccccchhhccccCCccCccc
Confidence            367899999999998     789999999874  3 38999999876321110                11134678899


Q ss_pred             cccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCC-CccCCCCCCCHHHHHHHHHH
Q psy3184          69 CVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI-DKIPFPKHVTRTAQSLIKAL  133 (185)
Q Consensus        69 ~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~-~~~~~p~~~s~~~~~li~~~  133 (185)
                      +|   |    |.+....++.              ++|..||. +.+..+....+. .+. ..+..+..++.++.++|.+|
T Consensus       183 ~a---P----E~~~~~~~~~~~Di~slG~vl~el~~g~~pf~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~  253 (305)
T cd05609         183 IA---P----EVILRQGYGKPVDWWAMGIILYEFLVGCVPFF-GDTPEELFGQVI-SDDIEWPEGDEALPADAQDLISRL  253 (305)
T ss_pred             cC---c----hhccCCCCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHH-hcccCCCCccccCCHHHHHHHHHH
Confidence            99   9    7665544443              88999999 888888777776 221 11222236899999999999


Q ss_pred             hhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         134 CKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       134 l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                      |..||.+||++  .++.+++.||||.+.+|..+...  ..+++|.+.+..
T Consensus       254 l~~~P~~R~~~--~~~~~ll~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  299 (305)
T cd05609         254 LRQNPLERLGT--GGAFEVKQHRFFLGLDWNGLLRQ--KAEFIPQLESED  299 (305)
T ss_pred             hccChhhccCc--cCHHHHHhCccccCCCHHHHhhc--CCCCCCCCCCcc
Confidence            99999999975  35799999999999999987765  346666665443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>KOG0596|consensus

Probab=99.77  E-value=8e-19  Score=146.82  Aligned_cols=142  Identities=18%  Similarity=0.324  Sum_probs=108.2

Q ss_pred             chhhhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCC
Q psy3184           3 NDFLKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDP   74 (185)
Q Consensus         3 ~~~~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P   74 (185)
                      .++.=++++.||++|+.++|+.     ||||.|+|+.++    .+||+|||++..+....   ...+.+||+.||+   |
T Consensus       458 ~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlVkG----~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMs---P  530 (677)
T KOG0596|consen  458 PDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLVKG----RLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMS---P  530 (677)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEEEee----eEEeeeechhcccCccccceeeccccCcccccC---H
Confidence            3456678899999999999998     899999999985    39999999998775542   2345799999999   9


Q ss_pred             cccccchhccCcce-------------------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCC-HHHHH
Q psy3184          75 MQTYNMIINVGIDN-------------------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVT-RTAQS  128 (185)
Q Consensus        75 ~~~~E~~~~~~~~~-------------------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s-~~~~~  128 (185)
                          |.+....++.                         ++|++||.+-.+....+..|.. ....+.||..-+ .++.+
T Consensus       531 ----EAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~~-P~~~Iefp~~~~~~~li~  605 (677)
T KOG0596|consen  531 ----EALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAITD-PNHEIEFPDIPENDELID  605 (677)
T ss_pred             ----HHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhcC-CCccccccCCCCchHHHH
Confidence                8887554441                         8999999733333444444441 112346775433 44999


Q ss_pred             HHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         129 LIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       129 li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      +++.||.+||.+|+     ++.+||+|||.+.+
T Consensus       606 ~mK~CL~rdPkkR~-----si~eLLqhpFl~~~  633 (677)
T KOG0596|consen  606 VMKCCLARDPKKRW-----SIPELLQHPFLQIQ  633 (677)
T ss_pred             HHHHHHhcCcccCC-----CcHHHhcCcccccc
Confidence            99999999999999     66999999999874

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.77  E-value=2.2e-18  Score=141.16  Aligned_cols=135  Identities=17%  Similarity=0.244  Sum_probs=101.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.||+|||+.     ||||+||+++.+.   .++|+|||+++............||+.|+|   |    |++.+.
T Consensus       124 ~~~qi~~aL~~LH~~givHrDikp~Nill~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~a---P----E~~~~~  193 (355)
T cd07874         124 LLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC---TLKILDFGLARTAGTSFMMTPYVVTRYYRA---P----EVILGM  193 (355)
T ss_pred             HHHHHHHHHHHHHhCCcccCCCChHHEEECCCC---CEEEeeCcccccCCCccccCCccccCCccC---H----HHHcCC
Confidence            468999999999998     7899999998853   399999999987655545556789999999   9    887766


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CC-----------------------CccC---------
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI-----------------------DKIP---------  117 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~-----------------------~~~~---------  117 (185)
                      .|+.              ++|..||. +.+..+.+..+... +.                       ....         
T Consensus       194 ~~~~~~DiwslG~il~el~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (355)
T cd07874         194 GYKENVDIWSVGCIMGEMVRHKILFP-GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSL  272 (355)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccc
Confidence            5554              88999998 76654443322200 00                       0000         


Q ss_pred             ------CCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         118 ------FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       118 ------~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                            .+...+.++++||.+||..||.+||     ++.++++||||..
T Consensus       273 ~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rp-----s~~ell~hp~~~~  316 (355)
T cd07874         273 FPADSEHNKLKASQARDLLSKMLVIDPAKRI-----SVDEALQHPYINV  316 (355)
T ss_pred             cccccccccccchHHHHHHHHHhcCCchhcC-----CHHHHhcCcchhc
Confidence                  1122467889999999999999999     6699999999963

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.77  E-value=3e-18  Score=135.96  Aligned_cols=133  Identities=14%  Similarity=0.239  Sum_probs=100.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||+.     |+||+||+++.+.   .++|+|||++.............||+.|+|   |    |++.+.
T Consensus       113 ~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  182 (288)
T cd07863         113 LMRQFLRGLDFLHANCIVHRDLKPENILVTSGG---QVKLADFGLARIYSCQMALTPVVVTLWYRA---P----EVLLQS  182 (288)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEECCCC---CEEECccCccccccCcccCCCccccccccC---c----hHhhCC
Confidence            468999999999998     7999999998753   399999999987655444455678999999   9    877665


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcC-C-CccC----------------------CCCCCCHHH
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVG-I-DKIP----------------------FPKHVTRTA  126 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~-~-~~~~----------------------~p~~~s~~~  126 (185)
                      .++.              ++|.+||. +.+......++.... . ....                      ....++.++
T Consensus       183 ~~~~~~DiwslG~~l~~l~~g~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (288)
T cd07863         183 TYATPVDMWSVGCIFAEMFRRKPLFC-GNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESG  261 (288)
T ss_pred             CCCCcchhhhHHHHHHHHHhCCcCcC-CCCHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCHHH
Confidence            5543              88999998 666555554443100 0 0000                      112468889


Q ss_pred             HHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         127 QSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       127 ~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      +++|.+||..||.+||     ++.+++.||||
T Consensus       262 ~~li~~~L~~dP~~R~-----t~~~~l~hp~f  288 (288)
T cd07863         262 AQLLLEMLTFNPHKRI-----SAFRALQHPFF  288 (288)
T ss_pred             HHHHHHHhccCcccCC-----CHHHHhcCCCC
Confidence            9999999999999999     66999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.77  E-value=2.4e-18  Score=136.53  Aligned_cols=133  Identities=18%  Similarity=0.242  Sum_probs=98.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ...||+.||.|||+.     ||||+||+++.+.   .++|+|||.+.......  ......|++.|+|   |    |++.
T Consensus       105 ~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  174 (287)
T cd07848         105 YIYQLIKAIHWCHKNDIVHRDIKPENLLISHND---VLKLCDFGFARNLSEGSNANYTEYVATRWYRS---P----ELLL  174 (287)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCC---cEEEeeccCcccccccccccccccccccccCC---c----HHHc
Confidence            468999999999987     7999999998753   49999999998764332  2334679999999   9    8776


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhc-CC---------------CccCCC-------------
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI---------------DKIPFP-------------  119 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~---------------~~~~~p-------------  119 (185)
                      +..++.              ++|.+||. +.+..+....+... +.               ....+|             
T Consensus       175 ~~~~~~~~DiwslGvil~el~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (287)
T cd07848         175 GAPYGKAVDMWSVGCILGELSDGQPLFP-GESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYL  253 (287)
T ss_pred             CCCCCCchhHHhHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhh
Confidence            655544              88999998 66544433222200 00               001111             


Q ss_pred             CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         120 KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       120 ~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      ..+|.++.+||++||..||.+||     +++++++||||
T Consensus       254 ~~~s~~~~dll~~~L~~~P~~R~-----s~~~~l~hp~f  287 (287)
T cd07848         254 GILSGVLLDLMKNLLKLNPTDRY-----LTEQCLNHPAF  287 (287)
T ss_pred             cccCHHHHHHHHHHccCCcccCC-----CHHHHhcCCCC
Confidence            23788999999999999999999     66999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.77  E-value=7e-18  Score=134.15  Aligned_cols=153  Identities=21%  Similarity=0.447  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--cccccccCCccccccCCCcccccchhc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      +.|++.||.|||+.     ||+|+||+++.+.   .++|+|||.+......  ......+|+..|+|   |    |.+..
T Consensus       111 ~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  180 (290)
T cd05613         111 SGEIVLALEHLHKLGIIYRDIKLENILLDSNG---HVVLTDFGLSKEFHEDEVERAYSFCGTIEYMA---P----DIVRG  180 (290)
T ss_pred             HHHHHHHHHHHHhCCeeccCCCHHHeEECCCC---CEEEeeCccceecccccccccccccCCcccCC---h----hhccC
Confidence            55999999999998     7899999998853   3999999998765432  22335678999999   9    76543


Q ss_pred             c--Ccce--------------eccCCCCCCCCCh----HHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          84 V--GIDN--------------IFSRPPFCVMNDP----MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        84 ~--~~~~--------------l~g~~Pf~~~~~~----~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                      .  .++.              ++|..||. ..+.    ......+.   .....+|..++..+.+++.+||..||.+|++
T Consensus       181 ~~~~~~~~~Dv~slG~~l~~ll~g~~p~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ll~~~l~~~p~~R~~  256 (290)
T cd05613         181 GDGGHDKAVDWWSMGVLMYELLTGASPFT-VDGEKNSQAEISRRIL---KSEPPYPQEMSALAKDIIQRLLMKDPKKRLG  256 (290)
T ss_pred             CCCCCCccccHHHHHHHHHHHhcCCCCCC-cCCccccHHHHHHHhh---ccCCCCCccCCHHHHHHHHHHhcCCHHHhcC
Confidence            1  1211              88999996 4332    33333333   1345667789999999999999999999998


Q ss_pred             CCCCChhhhhcCCCCCCCChhhhhcccCCCCccC
Q psy3184         144 YQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP  177 (185)
Q Consensus       144 ~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p  177 (185)
                      +...++++++.||||..+.|..+.....++||-|
T Consensus       257 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  290 (290)
T cd05613         257 CGPSDADEIKKHPFFQKINWDDLAAKKVPAPFKP  290 (290)
T ss_pred             CCCCCHHHHHcCcccccCCHHHHhhccCCCCCCC
Confidence            7777899999999999999999887777777754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0603|consensus

Probab=99.76  E-value=1.4e-18  Score=147.26  Aligned_cols=128  Identities=20%  Similarity=0.321  Sum_probs=104.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .++||+.|++|||++     |+||+|||+.. ..+ +++|+|||.++.....  ..+-|-|..|.|   |    |+....
T Consensus       420 w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~-~~g-~lrltyFG~a~~~~~~--~~tp~~t~~y~A---P----Evl~~~  488 (612)
T KOG0603|consen  420 WAAELVSAVDYLHEQGVVHRDLKPGNILLDG-SAG-HLRLTYFGFWSELERS--CDTPALTLQYVA---P----EVLAIQ  488 (612)
T ss_pred             HHHHHHHHHHHHHhcCeeecCCChhheeecC-CCC-cEEEEEechhhhCchh--hcccchhhcccC---h----hhhccC
Confidence            478999999999998     89999999962 234 4999999999876443  444566889999   9    998888


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      +|+.              ++|..||..+.+-.++...|.     ...+-..+|+++++||.+||+.||.+|+     ++.
T Consensus       489 ~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~~ei~~~i~-----~~~~s~~vS~~AKdLl~~LL~~dP~~Rl-----~~~  558 (612)
T KOG0603|consen  489 EYTEACDWWSLGVLLYEMLTGRTLFAAHPAGIEIHTRIQ-----MPKFSECVSDEAKDLLQQLLQVDPALRL-----GAD  558 (612)
T ss_pred             CCCcchhhHHHHHHHHHHHhCCCccccCCchHHHHHhhc-----CCccccccCHHHHHHHHHhccCChhhCc-----Chh
Confidence            8876              999999983333336666655     3444488999999999999999999999     559


Q ss_pred             hhhcCCCC
Q psy3184         151 DIKKHKWF  158 (185)
Q Consensus       151 ~ll~hp~f  158 (185)
                      +++.||||
T Consensus       559 ~i~~h~w~  566 (612)
T KOG0603|consen  559 EIGAHPWF  566 (612)
T ss_pred             hhccCcch
Confidence            99999999

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.76  E-value=3e-18  Score=134.01  Aligned_cols=138  Identities=29%  Similarity=0.476  Sum_probs=107.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||+.     +++|.||+++.+  + .++++|||.++....   .....|++.|++   |    |.+.+.
T Consensus       102 i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~--~-~~~l~dfg~~~~~~~---~~~~~~~~~y~~---p----e~~~~~  168 (260)
T cd05611         102 YIAEVVLGVEDLHQRGIIHRDIKPENLLIDQT--G-HLKLTDFGLSRNGLE---NKKFVGTPDYLA---P----ETILGV  168 (260)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHeEECCC--C-cEEEeecccceeccc---cccCCCCcCccC---h----hhhcCC
Confidence            367999999999998     789999999875  3 399999998875433   234578899999   9    776655


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCC--ccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID--KIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~--~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      .++.              ++|..||. ..+....+..+. .+..  ....+..++.++.++|.+||..||.+||++  .+
T Consensus       169 ~~~~~~Dv~slG~il~~l~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~--~~  244 (260)
T cd05611         169 GDDKMSDWWSLGCVIFEFLFGYPPFH-AETPDAVFDNIL-SRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGA--NG  244 (260)
T ss_pred             CCcchhhhHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHH-hcccCCCCcccccCCHHHHHHHHHHccCCHHHccCC--Cc
Confidence            4333              88999998 777777777665 2211  122334679999999999999999999964  45


Q ss_pred             hhhhhcCCCCCCCChh
Q psy3184         149 IVDIKKHKWFQGFDWD  164 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~  164 (185)
                      +++++.||||+.++|+
T Consensus       245 ~~~~l~~~~~~~~~~~  260 (260)
T cd05611         245 YQEIKSHPFFKSINWD  260 (260)
T ss_pred             HHHHHcChHhhcCCCC
Confidence            6899999999999995

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>PTZ00284 protein kinase; Provisional

Probab=99.76  E-value=1.8e-18  Score=146.97  Aligned_cols=137  Identities=12%  Similarity=0.140  Sum_probs=97.5

Q ss_pred             ccHHHHHHHHHHHhh-c-----CCCCCceEEccCCC-------------CCeeEEcccCceeEeecCcccccccCCcccc
Q psy3184           9 LDTLQVKEMVESMHQ-A-----EYKADNYVITEGEA-------------GNDLFVSAEGEFQVIKDGKILRLLSGRPPFC   69 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~-~-----~lkp~Nili~~~~~-------------~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~   69 (185)
                      ..+.||+.||+|||+ .     ||||+||+++.+..             ...++|+|||.+...  .......+||+.|+
T Consensus       235 ~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~--~~~~~~~~gt~~Y~  312 (467)
T PTZ00284        235 QIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDE--RHSRTAIVSTRHYR  312 (467)
T ss_pred             HHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccC--ccccccccCCcccc
Confidence            346899999999996 3     89999999986431             113899999977532  22334678999999


Q ss_pred             ccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhc-CCCc-------------------
Q psy3184          70 VMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GIDK-------------------  115 (185)
Q Consensus        70 a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~~-------------------  115 (185)
                      |   |    |++.+..|+.              ++|++||. +.+..+....+... |..+                   
T Consensus       313 A---P----E~~~~~~~~~~~DiwSlGvil~elltG~~pf~-~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  384 (467)
T PTZ00284        313 S---P----EVVLGLGWMYSTDMWSMGCIIYELYTGKLLYD-THDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSA  384 (467)
T ss_pred             C---c----HHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhc
Confidence            9   9    8887776665              89999998 66655443333210 0000                   


Q ss_pred             -----cCCC--------------CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         116 -----IPFP--------------KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       116 -----~~~p--------------~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                           ...|              ...++.+.+||.+||.+||.+|+     +++++++||||..
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~-----ta~e~L~Hp~~~~  443 (467)
T PTZ00284        385 GQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRL-----NARQMTTHPYVLK  443 (467)
T ss_pred             ccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCC-----CHHHHhcCccccc
Confidence                 0000              01245678999999999999999     6699999999975

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.76  E-value=4.8e-18  Score=136.19  Aligned_cols=140  Identities=19%  Similarity=0.199  Sum_probs=99.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||+.     ||||+||+++.+  + +++|+|||.+...... ......+||+.|+|   |    |++.+
T Consensus       108 ~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~--~-~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  177 (303)
T cd07869         108 FLFQLLRGLSYIHQRYILHRDLKPQNLLISDT--G-ELKLADFGLARAKSVPSHTYSNEVVTLWYRP---P----DVLLG  177 (303)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHEEECCC--C-CEEECCCCcceeccCCCccCCCCcccCCCCC---h----HHHcC
Confidence            467999999999998     899999999875  3 3999999998755332 23345678999999   9    87654


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CC-Ccc------C------------CC---------
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI-DKI------P------------FP---------  119 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~-~~~------~------------~p---------  119 (185)
                      . .|+.              ++|..||....+.......+... +. ...      .            .|         
T Consensus       178 ~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (303)
T cd07869         178 STEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNK  257 (303)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHHHhhc
Confidence            3 2333              88999998333433333333200 00 000      0            01         


Q ss_pred             CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         120 KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       120 ~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                      ...+.++.+||.+||..||.+|+     ++++++.||||+.+.+.
T Consensus       258 ~~~~~~~~dli~~mL~~dp~~R~-----s~~~~l~h~~f~~~~~~  297 (303)
T cd07869         258 LSYVNHAEDLASKLLQCFPKNRL-----SAQAALSHEYFSDLPPR  297 (303)
T ss_pred             cCCChHHHHHHHHHhccCchhcc-----CHHHHhcCcccccCChh
Confidence            12457899999999999999999     66999999999987653

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.76  E-value=5.6e-18  Score=134.61  Aligned_cols=152  Identities=24%  Similarity=0.463  Sum_probs=115.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.|++.||+|||+.     |++|.||+++.+.   .++++|||.+.......  .....+|+..|++   |    |.+.
T Consensus       110 ~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  179 (288)
T cd05583         110 YIAEIVLALDHLHQLGIIYRDIKLENILLDSEG---HVVLTDFGLSKEFLAEEEERAYSFCGTIEYMA---P----EVIR  179 (288)
T ss_pred             HHHHHHHHHHHHHHCCeeccCCCHHHeEECCCC---CEEEEECccccccccccccccccccCCccccC---H----HHhc
Confidence            356999999999997     7899999998753   38999999887654332  2234578999999   9    6654


Q ss_pred             ccC--cce--------------eccCCCCCCCCC----hHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCccc
Q psy3184          83 NVG--IDN--------------IFSRPPFCVMND----PMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        83 ~~~--~~~--------------l~g~~Pf~~~~~----~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                      ...  ++.              ++|..||. ..+    .......+.   ......|..++.++.++|.+||..||.+||
T Consensus       180 ~~~~~~~~~~Dv~slG~il~el~tg~~p~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~li~~~l~~~p~~R~  255 (288)
T cd05583         180 GGSGGHDKAVDWWSLGVLTFELLTGASPFT-VDGEQNSQSEISRRIL---KSKPPFPKTMSAEARDFIQKLLEKDPKKRL  255 (288)
T ss_pred             CCCCCCcchhhhHHHHHHHHHHHhCCCCcc-cCcccchHHHHHHHHH---ccCCCCCcccCHHHHHHHHHHhcCCHhhcc
Confidence            322  111              78999996 332    223333444   234567778999999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCChhhhhcccCCCCccC
Q psy3184         143 GYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP  177 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p  177 (185)
                      +.  .++.++++||||+.++|..+.+....+||-+
T Consensus       256 t~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  288 (288)
T cd05583         256 GA--NGADEIKNHPFFQGIDWDDLAAKRIPAPFKP  288 (288)
T ss_pred             Cc--chHHHHhcCcccccCCHHHHhhhccCCCCCC
Confidence            75  3578899999999999999988888888753

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.76  E-value=4.4e-18  Score=135.60  Aligned_cols=133  Identities=15%  Similarity=0.175  Sum_probs=99.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++...... ......|++.|+|   |    |++.+
T Consensus       108 ~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~---~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  177 (288)
T cd07871         108 FMFQLLRGLSYCHKRKILHRDLKPQNLLINEKG---ELKLADFGLARAKSVPTKTYSNEVVTLWYRP---P----DVLLG  177 (288)
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCHHHEEECCCC---CEEECcCcceeeccCCCccccCceecccccC---h----HHhcC
Confidence            467999999999998     7999999998853   39999999987654332 2344678999999   9    87654


Q ss_pred             -cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCC----------------ccCCC-----------CC
Q psy3184          84 -VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID----------------KIPFP-----------KH  121 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~----------------~~~~p-----------~~  121 (185)
                       ..|+.              ++|.+||. +.+..+....+......                ...+|           ..
T Consensus       178 ~~~~~~~~DiwslG~~l~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (288)
T cd07871         178 STEYSTPIDMWGVGCILYEMATGRPMFP-GSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPR  256 (288)
T ss_pred             CcccCcHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCCC
Confidence             33443              88999998 77766555444310000                00111           24


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      ++.++++||++||..||.+|+     +++++++||||
T Consensus       257 ~~~~~~dll~~mL~~dp~~R~-----t~~~~l~hp~f  288 (288)
T cd07871         257 LDTDGIDLLSSLLLYETKSRI-----SAEAALRHSYF  288 (288)
T ss_pred             CCHHHHHHHHHhcCcCcccCC-----CHHHHhcCCCC
Confidence            689999999999999999999     66999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.75  E-value=3.8e-18  Score=146.14  Aligned_cols=134  Identities=16%  Similarity=0.234  Sum_probs=109.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ...|++.||+|||+.     ||||+||+++.+.   .++|+|||+++.....   ......+||+.|+|   |    |++
T Consensus       148 i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~---~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~a---P----E~~  217 (496)
T PTZ00283        148 LFIQVLLAVHHVHSKHMIHRDIKSANILLCSNG---LVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVA---P----EIW  217 (496)
T ss_pred             HHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCC---CEEEEecccCeeccccccccccccccCCcceeC---H----HHh
Confidence            467999999999987     8999999998853   4999999998765432   23446789999999   9    888


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ....|+.              ++|..||. +.+....+..+. .+ ....+|..+++++.+++.+||..||.+||     
T Consensus       218 ~~~~~s~k~DVwSlGvilyeLltG~~Pf~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~~L~~dP~~RP-----  289 (496)
T PTZ00283        218 RRKPYSKKADMFSLGVLLYELLTLKRPFD-GENMEEVMHKTL-AG-RYDPLPPSISPEMQEIVTALLSSDPKRRP-----  289 (496)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHh-cC-CCCCCCCCCCHHHHHHHHHHcccChhhCc-----
Confidence            7666654              88999999 888888887777 33 23456778999999999999999999999     


Q ss_pred             ChhhhhcCCCCCCC
Q psy3184         148 GIVDIKKHKWFQGF  161 (185)
Q Consensus       148 ~~~~ll~hp~f~~~  161 (185)
                      ++.++++|||++..
T Consensus       290 s~~ell~~p~~~~~  303 (496)
T PTZ00283        290 SSSKLLNMPICKLF  303 (496)
T ss_pred             CHHHHHhCHHHHHh
Confidence            55999999998653

>KOG0660|consensus

Probab=99.75  E-value=3.2e-18  Score=136.77  Aligned_cols=142  Identities=15%  Similarity=0.260  Sum_probs=108.4

Q ss_pred             hhhhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec---CcccccccCCccccccCCCc
Q psy3184           4 DFLKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD---GKILRLLSGRPPFCVMNDPM   75 (185)
Q Consensus         4 ~~~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~---~~~~~~~~gt~~y~a~~~P~   75 (185)
                      +-+.++-.-||+.|+.|+|+.     |+||.|++++.+-   .+|++|||+++..+.   ....+-++.|..|.|   | 
T Consensus       124 d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c---~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRA---P-  196 (359)
T KOG0660|consen  124 DDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADC---DLKICDFGLARYLDKFFEDGFMTEYVATRWYRA---P-  196 (359)
T ss_pred             HHHHHHHHHHHHHhcchhhcccccccccchhheeeccCC---CEEeccccceeeccccCcccchhcceeeeeecC---H-
Confidence            445666688999999999998     8999999999963   489999999998854   333456788999999   9 


Q ss_pred             ccccchhc-cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CCC-------------------ccCCC-
Q psy3184          76 QTYNMIIN-VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GID-------------------KIPFP-  119 (185)
Q Consensus        76 ~~~E~~~~-~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~-------------------~~~~p-  119 (185)
                         |++.. ..|+.              ++|++-|. |.+....++.|... |..                   -+..| 
T Consensus       197 ---Elll~~~~Yt~aiDiWSvGCI~AEmL~gkplFp-G~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~  272 (359)
T KOG0660|consen  197 ---ELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFP-GKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPK  272 (359)
T ss_pred             ---HHHhccccccchhhhhhhhHHHHHHHcCCCCCC-CCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCC
Confidence               87654 45654              89999998 77755544443310 000                   01111 


Q ss_pred             -------CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         120 -------KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       120 -------~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                             ...++.+.+|+.+||..||.+|+     ++++.|.|||+...
T Consensus       273 ~~f~~~fp~a~p~AidLlekmL~fdP~kRi-----ta~eAL~hPYl~~~  316 (359)
T KOG0660|consen  273 QPFSSIFPNANPLAIDLLEKMLVFDPKKRI-----TAEEALAHPYLAPY  316 (359)
T ss_pred             CCHHHHcCCCCHHHHHHHHHHhccCccccC-----CHHHHhcChhhhhh
Confidence                   36899999999999999999999     77999999999754

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.75  E-value=1.4e-17  Score=136.49  Aligned_cols=135  Identities=16%  Similarity=0.218  Sum_probs=100.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.+... .......||..|+|   |    |++..
T Consensus       173 i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~---~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~~  242 (353)
T PLN00034        173 VARQILSGIAYLHRRHIVHRDIKPSNLLINSAK---NVKIADFGVSRILAQTMDPCNSSVGTIAYMS---P----ERINT  242 (353)
T ss_pred             HHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCC---CEEEcccccceecccccccccccccCccccC---c----ccccc
Confidence            478999999999997     7999999998853   4999999999866433 22345689999999   9    65532


Q ss_pred             ----cCcc---e------------eccCCCCCCCCC---hHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcc
Q psy3184          84 ----VGID---N------------IFSRPPFCVMND---PMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        84 ----~~~~---~------------l~g~~Pf~~~~~---~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R  141 (185)
                          ..|.   .            ++|..||. ...   .......+..  ......+..++.++++||.+||..||.+|
T Consensus       243 ~~~~~~~~~~~~DvwslGvil~el~~g~~pf~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~li~~~l~~~P~~R  319 (353)
T PLN00034        243 DLNHGAYDGYAGDIWSLGVSILEFYLGRFPFG-VGRQGDWASLMCAICM--SQPPEAPATASREFRHFISCCLQREPAKR  319 (353)
T ss_pred             ccccCcCCCcchhHHHHHHHHHHHHhCCCCCC-CCCCccHHHHHHHHhc--cCCCCCCCccCHHHHHHHHHHccCChhhC
Confidence                1111   1            88999996 332   2333333331  23455667889999999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCCCC
Q psy3184         142 LGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       142 ~~~~~~~~~~ll~hp~f~~~~  162 (185)
                      |     ++.+++.||||.+..
T Consensus       320 p-----t~~ell~hp~~~~~~  335 (353)
T PLN00034        320 W-----SAMQLLQHPFILRAQ  335 (353)
T ss_pred             c-----CHHHHhcCcccccCC
Confidence            9     569999999998753

>KOG0589|consensus

Probab=99.74  E-value=2.8e-18  Score=141.83  Aligned_cols=131  Identities=16%  Similarity=0.317  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ..|++.|++|||++     |+|+.||+++++.   .|+|.|||+++.+.... ...+++|||.||+   |    |++.+.
T Consensus       112 ~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~---~VkLgDfGlaK~l~~~~~~a~tvvGTp~Ymc---P----Eil~d~  181 (426)
T KOG0589|consen  112 FVQILLAVNYLHENRVLHRDLKCANIFLTKDK---KVKLGDFGLAKILNPEDSLASTVVGTPYYMC---P----EILSDI  181 (426)
T ss_pred             HHHHHHHHHHHHhhhhhcccchhhhhhccccC---ceeecchhhhhhcCCchhhhheecCCCcccC---H----HHhCCC
Confidence            57999999999976     8999999999974   28999999999887765 7889999999999   9    999999


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      +|+.              ++-+++|. +.|...+..+|. .+ ...+.|..+|.+++.+|+.||..+|..||     ++.
T Consensus       182 pYn~KSDiWsLGC~~yEm~~lk~aF~-a~~m~~Li~ki~-~~-~~~Plp~~ys~el~~lv~~~l~~~P~~RP-----sa~  253 (426)
T KOG0589|consen  182 PYNEKSDIWSLGCCLYEMCTLKPAFK-ASNMSELILKIN-RG-LYSPLPSMYSSELRSLVKSMLRKNPEHRP-----SAL  253 (426)
T ss_pred             CCCccCcchhhcchHHHHHhcccccC-ccchHHHHHHHh-hc-cCCCCCccccHHHHHHHHHHhhcCCccCC-----CHH
Confidence            8887              77789999 999999999998 33 24677788999999999999999999999     779


Q ss_pred             hhhcCCCCC
Q psy3184         151 DIKKHKWFQ  159 (185)
Q Consensus       151 ~ll~hp~f~  159 (185)
                      +++.+|...
T Consensus       254 ~LL~~P~l~  262 (426)
T KOG0589|consen  254 ELLRRPHLL  262 (426)
T ss_pred             HHhhChhhh
Confidence            999998765

>KOG0574|consensus

Probab=99.74  E-value=2.8e-19  Score=140.73  Aligned_cols=133  Identities=19%  Similarity=0.281  Sum_probs=106.9

Q ss_pred             HHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhccCcc
Q psy3184          14 VKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIINVGID   87 (185)
Q Consensus        14 i~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~   87 (185)
                      .+.||+|||..     |||.+|||++.+.  . .+|+|||.+..+... ....+..|||.|||   |    |++..-+|+
T Consensus       138 TLKGL~YLH~~~KIHRDIKAGNILLNT~G--~-AKLADFGVAGQLTDTMAKRNTVIGTPFWMA---P----EVI~EIGY~  207 (502)
T KOG0574|consen  138 TLKGLQYLHDLKKIHRDIKAGNILLNTDG--I-AKLADFGVAGQLTDTMAKRNTVIGTPFWMA---P----EVIEEIGYD  207 (502)
T ss_pred             HHhHHHHHHHHHHHHhhcccccEEEcccc--h-hhhhhccccchhhhhHHhhCccccCccccc---H----HHHHHhccc
Confidence            35789999986     9999999999864  3 799999999766443 45567899999999   9    777666777


Q ss_pred             e--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhh
Q psy3184          88 N--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIK  153 (185)
Q Consensus        88 ~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll  153 (185)
                      .              ..|++||. ..-++..+.+|.+.....+.-|+.+|+++-|||++||.++|++|-     ++.+++
T Consensus       208 ~~ADIWSLGITaIEMAEG~PPYs-DIHPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~-----TA~~L~  281 (502)
T KOG0574|consen  208 TKADIWSLGITAIEMAEGRPPYS-DIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERK-----TALRLC  281 (502)
T ss_pred             hhhhHhhhcchhhhhhcCCCCcc-cccccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHH-----HHHHHh
Confidence            6              78999998 666666666666322233455678999999999999999999999     669999


Q ss_pred             cCCCCCCCC
Q psy3184         154 KHKWFQGFD  162 (185)
Q Consensus       154 ~hp~f~~~~  162 (185)
                      .|||++++.
T Consensus       282 ~H~FiknA~  290 (502)
T KOG0574|consen  282 EHTFIKNAP  290 (502)
T ss_pred             hhhhhcCCC
Confidence            999998875

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.74  E-value=6.7e-18  Score=143.95  Aligned_cols=133  Identities=16%  Similarity=0.235  Sum_probs=108.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||+.     ||||+||+++.+.   .++|+|||+++......   .....+||+.|+|   |    |++
T Consensus       174 i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~---~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~a---P----E~~  243 (478)
T PTZ00267        174 LFYQIVLALDEVHSRKMMHRDLKSANIFLMPTG---IIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLA---P----ELW  243 (478)
T ss_pred             HHHHHHHHHHHHHhCCEEECCcCHHhEEECCCC---cEEEEeCcCceecCCccccccccccCCCccccC---H----hHh
Confidence            467999999999997     8999999998753   39999999998764332   2446789999999   9    877


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ....|+.              ++|..||. +.+..++...+. .+ ....+|..++.+++++|.+||..||.+||     
T Consensus       244 ~~~~~~~~~Dv~slG~~l~el~tg~~Pf~-~~~~~~~~~~~~-~~-~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----  315 (478)
T PTZ00267        244 ERKRYSKKADMWSLGVILYELLTLHRPFK-GPSQREIMQQVL-YG-KYDPFPCPVSSGMKALLDPLLSKNPALRP-----  315 (478)
T ss_pred             CCCCCCcHHhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHH-hC-CCCCCCccCCHHHHHHHHHHhccChhhCc-----
Confidence            6665554              88999999 888888888777 23 23456678999999999999999999999     


Q ss_pred             ChhhhhcCCCCCC
Q psy3184         148 GIVDIKKHKWFQG  160 (185)
Q Consensus       148 ~~~~ll~hp~f~~  160 (185)
                      ++.+++.|+|++.
T Consensus       316 s~~~~l~~~~~~~  328 (478)
T PTZ00267        316 TTQQLLHTEFLKY  328 (478)
T ss_pred             CHHHHHhCHHHHH
Confidence            5599999999854

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.74  E-value=1.1e-17  Score=139.14  Aligned_cols=142  Identities=14%  Similarity=0.074  Sum_probs=102.7

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ..+.||+.||.|||++     ||||+||+++.+.   .++|+|||++.......   .....+||+.|+|   |    |+
T Consensus       189 ~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~---~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~a---P----E~  258 (392)
T PHA03207        189 TIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPE---NAVLGDFGAACKLDAHPDTPQCYGWSGTLETNS---P----EL  258 (392)
T ss_pred             HHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCC---CEEEccCccccccCcccccccccccccccCccC---H----hH
Confidence            4478999999999997     7899999998753   38999999987654332   2235689999999   9    88


Q ss_pred             hhccCcce--------------eccCCCCCCCCChH---HHHHHHHh-cCCCc-------------------------cC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPM---QTYNMIIN-VGIDK-------------------------IP  117 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~---~~~~~i~~-~~~~~-------------------------~~  117 (185)
                      +....|+.              ++|..||. +.+..   ..+..+.. .+..+                         ..
T Consensus       259 ~~~~~~~~~~DvwslGvil~el~~g~~pf~-~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (392)
T PHA03207        259 LALDPYCAKTDIWSAGLVLFEMSVKNVTLF-GKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYT  337 (392)
T ss_pred             hcCCCCCchhhHHHHHHHHHHHHHCCCCCC-CCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCCcc
Confidence            77665554              78999997 54321   11111110 00001                         11


Q ss_pred             CC-----CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhh
Q psy3184         118 FP-----KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGL  166 (185)
Q Consensus       118 ~p-----~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~  166 (185)
                      .|     ..++.++.+||++||..||++||     ++.+++.||||+...|..+
T Consensus       338 ~~~~~~~~~~~~~~~~li~~ml~~dp~~Rp-----sa~e~l~~p~f~~~~~~~~  386 (392)
T PHA03207        338 IPPVIRKYGMHMDVEYLIAKMLTFDQEFRP-----SAQDILSLPLFTKEPINLL  386 (392)
T ss_pred             ccchhhccCcchhHHHHHHHHhccChhhCC-----CHHHHhhCchhhccchhhh
Confidence            11     23578899999999999999999     6699999999998888765

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.74  E-value=2.1e-17  Score=136.33  Aligned_cols=138  Identities=16%  Similarity=0.197  Sum_probs=102.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--cccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||+.     ||||+||+++.+.   .++|+|||++......  .......+++.|+|   |    |++.
T Consensus       108 ~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~---~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  177 (372)
T cd07853         108 FLYQILRGLKYLHSAGILHRDIKPGNLLVNSNC---VLKICDFGLARVEEPDESKHMTQEVVTQYYRA---P----EILM  177 (372)
T ss_pred             HHHHHHHHHHHHHhCCeeCCCCChHHEEECCCC---CEEeccccceeecccCccccCCCCCcCCCcCC---H----HHHc
Confidence            368999999999998     8999999998853   4999999998765432  22234578999999   9    8776


Q ss_pred             ccC-cce--------------eccCCCCCCCCChHHHHHHHHhc-----------------------CCCcc------CC
Q psy3184          83 NVG-IDN--------------IFSRPPFCVMNDPMQTYNMIINV-----------------------GIDKI------PF  118 (185)
Q Consensus        83 ~~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-----------------------~~~~~------~~  118 (185)
                      +.. |+.              ++|..||. +.+.......+...                       .....      .+
T Consensus       178 ~~~~~~~~~DiwslG~il~el~~g~~pf~-~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (372)
T cd07853         178 GSRHYTSAVDIWSVGCIFAELLGRRILFQ-AQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTL  256 (372)
T ss_pred             CCCCCCcHHHHHhHHHHHHHHHcCCCCCC-CCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhccc
Confidence            532 333              88999998 77766555444310                       00000      12


Q ss_pred             CCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCCh
Q psy3184         119 PKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW  163 (185)
Q Consensus       119 p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~  163 (185)
                      ....+.++.+||.+||..||.+||     ++.+++.||||++..+
T Consensus       257 ~~~~~~~~~~li~~mL~~dP~~R~-----t~~e~l~hp~~~~~~~  296 (372)
T cd07853         257 SSQATHEAVHLLCRMLVFDPDKRI-----SAADALAHPYLDEGRL  296 (372)
T ss_pred             CCCCCHHHHHHHHHhCCCChhhCc-----CHHHHhcCHhhCCCcc
Confidence            234689999999999999999999     6699999999988654

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.74  E-value=1e-17  Score=135.83  Aligned_cols=139  Identities=15%  Similarity=0.197  Sum_probs=98.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.++......    .....+||+.|+|   |    |+
T Consensus       108 i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~a---P----E~  177 (338)
T cd07859         108 FLYQLLRALKYIHTANVFHRDLKPKNILANADC---KLKICDFGLARVAFNDTPTAIFWTDYVATRWYRA---P----EL  177 (338)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHeEECCCC---cEEEccCccccccccccCccccccCCCCCCCcCC---H----HH
Confidence            467999999999998     7999999998853   38999999987543221    1234689999999   9    77


Q ss_pred             hhc--cCcce--------------eccCCCCCCCCChHHHHHHHHh--------------c-----------CCCccCCC
Q psy3184          81 IIN--VGIDN--------------IFSRPPFCVMNDPMQTYNMIIN--------------V-----------GIDKIPFP  119 (185)
Q Consensus        81 ~~~--~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~--------------~-----------~~~~~~~p  119 (185)
                      +..  ..|+.              ++|.+||. +.+.......+..              .           ......+.
T Consensus       178 ~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  256 (338)
T cd07859         178 CGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFP-GKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFS  256 (338)
T ss_pred             HhccccccCchhHHHHHHHHHHHHHcCCCCCC-CCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchH
Confidence            654  33433              88999998 6554332221110              0           00000110


Q ss_pred             ---CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         120 ---KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       120 ---~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                         ..+++++.++|.+||..||.+||     +++++++||||+++...
T Consensus       257 ~~~~~~~~~~~~li~~~l~~~P~~Rp-----t~~e~l~hp~f~~~~~~  299 (338)
T cd07859         257 QKFPNADPLALRLLERLLAFDPKDRP-----TAEEALADPYFKGLAKV  299 (338)
T ss_pred             HhcCCCChHHHHHHHHHcCcCcccCC-----CHHHHhcCchhhhcCcc
Confidence               24678899999999999999999     66999999999876553

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.73  E-value=2.7e-17  Score=128.64  Aligned_cols=132  Identities=19%  Similarity=0.305  Sum_probs=103.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc----cccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI----LRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~----~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.|++.||.|||+.     |++|+||+++.+.   +++|+|||.++.......    .....|+..|+|   |    |+
T Consensus       109 ~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  178 (263)
T cd06625         109 YTRQILEGVEYLHSNMIVHRDIKGANILRDSAG---NVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMS---P----EV  178 (263)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCC---CEEEeecccceeccccccccccccCCCcCccccC---c----ce
Confidence            467899999999987     7899999998753   499999999876543211    134578899999   9    87


Q ss_pred             hhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      +.+..++.              ++|..||. ..+.......+. .......+|..++.++.++|.+||..+|.+||    
T Consensus       179 ~~~~~~~~~~Di~slG~il~el~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----  252 (263)
T cd06625         179 ISGEGYGRKADVWSVGCTVVEMLTEKPPWA-EFEAMAAIFKIA-TQPTNPQLPSHVSPDARNFLRRTFVENAKKRP----  252 (263)
T ss_pred             eccCCCCchhhhHHHHHHHHHHHhCCCCcc-ccchHHHHHHHh-ccCCCCCCCccCCHHHHHHHHHHhhcCcccCC----
Confidence            76554433              88999998 655555554544 23345677888999999999999999999999    


Q ss_pred             CChhhhhcCCCC
Q psy3184         147 GGIVDIKKHKWF  158 (185)
Q Consensus       147 ~~~~~ll~hp~f  158 (185)
                       ++.+++.|+||
T Consensus       253 -t~~~ll~~~~~  263 (263)
T cd06625         253 -SAEELLRHFFV  263 (263)
T ss_pred             -CHHHHhhCCCC
Confidence             66999999998

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.73  E-value=1.7e-17  Score=136.39  Aligned_cols=136  Identities=15%  Similarity=0.167  Sum_probs=93.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.++............||+.|+|   |    |++.+.
T Consensus       162 i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~---~~kl~DfG~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~~  231 (357)
T PHA03209        162 IEKQILEGLRYLHAQRIIHRDVKTENIFINDVD---QVCIGDLGAAQFPVVAPAFLGLAGTVETNA---P----EVLARD  231 (357)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHEEECCCC---CEEEecCccccccccCcccccccccccccC---C----eecCCC
Confidence            468999999999998     7999999998853   389999999875544444456789999999   9    877666


Q ss_pred             Ccce--------------ec-cCCCCCCCCChH---------HHHHHHH-hcCCCccCCC--------------------
Q psy3184          85 GIDN--------------IF-SRPPFCVMNDPM---------QTYNMII-NVGIDKIPFP--------------------  119 (185)
Q Consensus        85 ~~~~--------------l~-g~~Pf~~~~~~~---------~~~~~i~-~~~~~~~~~p--------------------  119 (185)
                      .|+.              ++ +.++|. .....         ..+..+. ..+..+..+|                    
T Consensus       232 ~~~~~~DiwSlGvvl~ell~~~~~~f~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (357)
T PHA03209        232 KYNSKADIWSAGIVLFEMLAYPSTIFE-DPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLERQ  310 (357)
T ss_pred             CCCchhhHHHHHHHHHHHHHcCCcccc-CCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcccCCC
Confidence            5554              33 444554 22110         1111111 0011111111                    


Q ss_pred             ----------CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         120 ----------KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       120 ----------~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                                ..++.++.+||.+||..||.+||     +++++++||||+.+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rp-----ta~e~l~hp~f~~~  357 (357)
T PHA03209        311 PYTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRP-----SAEEILNYPMFAQL  357 (357)
T ss_pred             cccccHHHhccCCCchHHHHHHHHHcCCcccCc-----CHHHHhcCchhccC
Confidence                      13577888999999999999999     66999999999863

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.73  E-value=3.1e-17  Score=127.83  Aligned_cols=138  Identities=29%  Similarity=0.512  Sum_probs=107.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---------ccccccCCccccccCCCc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---------ILRLLSGRPPFCVMNDPM   75 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---------~~~~~~gt~~y~a~~~P~   75 (185)
                      .+.||+.||.|||+.     ||+|+||+++.+.   .++++|||++.......         ......++..|++   | 
T Consensus        98 i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---P-  170 (265)
T cd05579          98 YIAEIVLALEYLHSNGIIHRDLKPDNILIDSNG---HLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIA---P-  170 (265)
T ss_pred             HHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCC---CEEEEecccchhcccCcccccccccccccCcccCccccC---H-
Confidence            478999999999998     7899999999853   48999999887543321         2234568889999   9 


Q ss_pred             ccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCC--CHHHHHHHHHHhhcCcC
Q psy3184          76 QTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHV--TRTAQSLIKALCKESPA  139 (185)
Q Consensus        76 ~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~--s~~~~~li~~~l~~dp~  139 (185)
                         |+.....++.              ++|..||. ..+..+....+. .+  ...+|...  +.++.+++.+||..+|.
T Consensus       171 ---e~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~-~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~~~l~~~p~  243 (265)
T cd05579         171 ---EVILGQGHSKTVDWWSLGCILYEFLVGIPPFH-GETPEEIFQNIL-NG--KIEWPEDVEVSDEAIDLISKLLVPDPE  243 (265)
T ss_pred             ---HHhcCCCCCcchhhHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHh-cC--CcCCCccccCCHHHHHHHHHHhcCCHh
Confidence               7665443332              78999998 777778777776 22  45566554  99999999999999999


Q ss_pred             cccCCCCCChhhhhcCCCCCCCCh
Q psy3184         140 ERLGYQRGGIVDIKKHKWFQGFDW  163 (185)
Q Consensus       140 ~R~~~~~~~~~~ll~hp~f~~~~~  163 (185)
                      +||++  .++.++++||||++++|
T Consensus       244 ~Rpt~--~~~~~~l~~~~~~~~~~  265 (265)
T cd05579         244 KRLGA--KSIEEIKNHPFFKGIDW  265 (265)
T ss_pred             hcCCC--ccHHHHhcCccccCCCC
Confidence            99943  34499999999999988

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.73  E-value=2.9e-17  Score=133.54  Aligned_cols=137  Identities=13%  Similarity=0.158  Sum_probs=100.0

Q ss_pred             ccHHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.|++.||.|||+.      ||||+||+++.+.   .++|+|||++..... .......|++.|+|   |    |++.
T Consensus       107 ~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~-~~~~~~~g~~~y~a---P----E~~~  175 (331)
T cd06649         107 KVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRG---EIKLCDFGVSGQLID-SMANSFVGTRSYMS---P----ERLQ  175 (331)
T ss_pred             HHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCC---cEEEccCcccccccc-cccccCCCCcCcCC---H----hHhc
Confidence            3467999999999974      7999999998853   399999999876533 23345689999999   9    8776


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcC------------------------------------
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVG------------------------------------  112 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~------------------------------------  112 (185)
                      +..++.              ++|..||. ..+..++...+. ..                                    
T Consensus       176 ~~~~~~~~DiwslG~il~el~tg~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (331)
T cd06649         176 GTHYSVQSDIWSMGLSLVELAIGRYPIP-PPDAKELEAIFG-RPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAI  253 (331)
T ss_pred             CCCCCchHhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHhc-ccccccccCCccccCcccccccccccccccccccchhH
Confidence            655544              88999997 555443322111 00                                    


Q ss_pred             ---------CCccCCC-CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCCh
Q psy3184         113 ---------IDKIPFP-KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW  163 (185)
Q Consensus       113 ---------~~~~~~p-~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~  163 (185)
                               ...+..+ ..+++++++||++||..||++||     ++++++.||||+....
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rp-----t~~ell~h~~~~~~~~  309 (331)
T cd06649         254 FELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERA-----DLKMLMNHTFIKRSEV  309 (331)
T ss_pred             HHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCC-----CHHHHhcChHHhhccc
Confidence                     0111222 24789999999999999999999     6699999999976443

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.72  E-value=3.1e-17  Score=133.72  Aligned_cols=135  Identities=17%  Similarity=0.257  Sum_probs=99.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++....  .....+||+.|+|   |    |++.+ 
T Consensus       123 i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~---~~kl~Dfg~~~~~~~--~~~~~~~t~~y~a---P----E~~~~~  190 (343)
T cd07878         123 LIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDC---ELRILDFGLARQADD--EMTGYVATRWYRA---P----EIMLNW  190 (343)
T ss_pred             HHHHHHHHHHHHHHCCeecccCChhhEEECCCC---CEEEcCCccceecCC--CcCCccccccccC---c----hHhcCC
Confidence            478999999999998     7999999998853   399999999986543  2345689999999   9    87654 


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CCC-------------------ccCCC--------CC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GID-------------------KIPFP--------KH  121 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~-------------------~~~~p--------~~  121 (185)
                      ..|+.              ++|..||. +.+..+.+..+... +..                   ....|        ..
T Consensus       191 ~~~~~~~DiwslG~il~el~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (343)
T cd07878         191 MHYNQTVDIWSVGCIMAELLKGKALFP-GNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRG  269 (343)
T ss_pred             ccCCchhhhHhHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhccC
Confidence            23332              88999998 66655444333210 000                   00111        23


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~  162 (185)
                      .++.+.+||.+||..||.+||     ++.+++.||||....
T Consensus       270 ~~~~~~~li~~mL~~dp~~R~-----s~~ell~hp~~~~~~  305 (343)
T cd07878         270 ANPLAIDLLEKMLVLDSDKRI-----SASEALAHPYFSQYH  305 (343)
T ss_pred             CCHHHHHHHHHHcCCChhhCC-----CHHHHhcCcchhccC
Confidence            567889999999999999999     669999999997653

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.72  E-value=9.3e-17  Score=125.13  Aligned_cols=131  Identities=20%  Similarity=0.302  Sum_probs=104.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.|+.+||++     |++|+||+++.+.   .++++|||.+...... .......|++.|+|   |    |++..
T Consensus       107 ~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~---~~~l~df~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  176 (257)
T cd08223         107 WFVQIAMALQYLHEKHILHRDLKTQNVFLTRTN---IIKVGDLGIARVLENQCDMASTLIGTPYYMS---P----ELFSN  176 (257)
T ss_pred             HHHHHHHHHHHHHhCCeeccCCCchhEEEecCC---cEEEecccceEEecccCCccccccCCcCccC---h----hHhcC
Confidence            467899999999998     7899999998753   3999999999866432 23345678999999   9    87765


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. +.+.......+. .+ .....|..++.++.+++.+|+..||.+||     ++
T Consensus       177 ~~~~~~~Dv~slG~il~~l~~g~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----~~  248 (257)
T cd08223         177 KPYNYKSDVWALGCCVYEMATLKHAFN-AKDMNSLVYRII-EG-KLPPMPKDYSPELGELIATMLSKRPEKRP-----SV  248 (257)
T ss_pred             CCCCchhhhHHHHHHHHHHHcCCCCCC-CCCHHHHHHHHH-hc-CCCCCccccCHHHHHHHHHHhccCcccCC-----CH
Confidence            54443              88999998 777666666665 22 23355677899999999999999999999     56


Q ss_pred             hhhhcCCCC
Q psy3184         150 VDIKKHKWF  158 (185)
Q Consensus       150 ~~ll~hp~f  158 (185)
                      .+++.||||
T Consensus       249 ~~~l~~~~~  257 (257)
T cd08223         249 KSILRQPYI  257 (257)
T ss_pred             HHHhcCCCC
Confidence            999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.72  E-value=3e-17  Score=134.48  Aligned_cols=139  Identities=19%  Similarity=0.230  Sum_probs=102.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.||+|||++     ||||+||+++.+.   +++|+|||.++............|++.|+|   |    |++.+.
T Consensus       123 ~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  192 (353)
T cd07850         123 LLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC---TLKILDFGLARTAGTSFMMTPYVVTRYYRA---P----EVILGM  192 (353)
T ss_pred             HHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCC---CEEEccCccceeCCCCCCCCCCcccccccC---H----HHHhCC
Confidence            368999999999997     7999999998853   499999999987655444455678999999   9    887765


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCc-------------------c--------------C
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK-------------------I--------------P  117 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~-------------------~--------------~  117 (185)
                      .++.              ++|..||. +.+....+.++...-..+                   .              .
T Consensus       193 ~~~~~~DvwslG~~l~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (353)
T cd07850         193 GYKENVDIWSVGCIMGEMIRGTVLFP-GTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVL  271 (353)
T ss_pred             CCCCchhhHhHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccc
Confidence            5544              88999998 666544444432100000                   0              0


Q ss_pred             C-------CCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhh
Q psy3184         118 F-------PKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGL  166 (185)
Q Consensus       118 ~-------p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~  166 (185)
                      +       +...+.+++++|.+||..||.+||     ++.+++.||||+  .|-..
T Consensus       272 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----t~~eiL~~~~~~--~~~~~  320 (353)
T cd07850         272 FPPDSESHNKLKASQARDLLSKMLVIDPEKRI-----SVDDALQHPYIN--VWYDP  320 (353)
T ss_pred             cCcccccccccchhHHHHHHHHHcCCChhhCc-----CHHHHhcChhHh--hccCC
Confidence            1       113466789999999999999999     669999999997  44443

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.72  E-value=4.3e-17  Score=131.29  Aligned_cols=137  Identities=14%  Similarity=0.157  Sum_probs=93.3

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccC-CCCCeeEEcccCceeEeecC----cccccccCCccccccCCCcccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEG-EAGNDLFVSAEGEFQVIKDG----KILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~-~~~~~i~l~d~g~~~~~~~~----~~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      ..+.||+.||+|||++     ||||+||++..+ .....++|+|||.++.....    ......+||+.|+|   |    
T Consensus       112 ~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~a---P----  184 (317)
T cd07868         112 SLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRA---P----  184 (317)
T ss_pred             HHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccC---C----
Confidence            3478999999999997     899999999542 11224999999999866432    12345688999999   9    


Q ss_pred             cchhcc-Ccce--------------eccCCCCCCCCCh---------HHHHHHHHhcCCCc--------cCC--------
Q psy3184          79 NMIINV-GIDN--------------IFSRPPFCVMNDP---------MQTYNMIINVGIDK--------IPF--------  118 (185)
Q Consensus        79 E~~~~~-~~~~--------------l~g~~Pf~~~~~~---------~~~~~~i~~~~~~~--------~~~--------  118 (185)
                      |++.+. .|+.              ++|.+||. +...         ...+..+.+....+        ..+        
T Consensus       185 E~~~~~~~~~~~~DiwslG~il~el~~g~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (317)
T cd07868         185 ELLLGARHYTKAIDIWAIGCIFAELLTSEPIFH-CRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMK  263 (317)
T ss_pred             HHHcCCCCcCchhhHHHHHHHHHHHHhCCCCcc-CCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchhhhhh
Confidence            877653 3443              88999996 3321         11112221000000        000        


Q ss_pred             -------------------CCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         119 -------------------PKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       119 -------------------p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                                         ....+.++.+||.+||..||.+|+     +++++++||||
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~-----t~~e~l~hp~f  317 (317)
T cd07868         264 DFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRI-----TSEQAMQDPYF  317 (317)
T ss_pred             hhhccccCcccccchHHhcCCCCChHHHHHHHHHhccCcccCC-----CHHHHhcCCCC
Confidence                               012357899999999999999999     66999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0192|consensus

Probab=99.72  E-value=5.5e-17  Score=133.43  Aligned_cols=124  Identities=19%  Similarity=0.268  Sum_probs=101.9

Q ss_pred             cHHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .|.||+.|++|||++      |||++|+|++.+.  ..+||+|||+++..... .......||+.|||   |    |++.
T Consensus       147 ~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~--~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMA---P----Ev~~  217 (362)
T KOG0192|consen  147 IALDIARGMEYLHSEGPIIHRDLKSDNILVDLKG--KTLKIADFGLSREKVISKTSMTSVAGTYRWMA---P----EVLR  217 (362)
T ss_pred             HHHHHHHHHHHHhcCCCeeecccChhhEEEcCCC--CEEEECCCccceeeccccccccCCCCCccccC---h----hhhc
Confidence            388999999999997      6899999999964  24999999999877654 33344799999999   9    8877


Q ss_pred             --ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 --NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 --~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                        ...|+.              ++|..||. +....+....+. .+..++.+|..+++.+..++..|+..||..||++
T Consensus       218 ~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~-~~~~~~~~~~v~-~~~~Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f  293 (362)
T KOG0192|consen  218 GEKSPYTEKSDVYSFGIVLWELLTGEIPFE-DLAPVQVASAVV-VGGLRPPIPKECPPHLSSLMERCWLVDPSRRPSF  293 (362)
T ss_pred             CCCCcCCccchhhhHHHHHHHHHHCCCCCC-CCCHHHHHHHHH-hcCCCCCCCccCCHHHHHHHHHhCCCCCCcCCCH
Confidence              445554              99999999 766666666665 3346888898899999999999999999999966

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.71  E-value=1.1e-16  Score=127.53  Aligned_cols=144  Identities=17%  Similarity=0.225  Sum_probs=107.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...|++.|+.|||+.     |++|+||+++.+  + .++|+|||.+...... .......+++.|+|   |    |++..
T Consensus       115 ~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~--~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  184 (292)
T cd06644         115 ICRQMLEALQYLHSMKIIHRDLKAGNVLLTLD--G-DIKLADFGVSAKNVKTLQRRDSFIGTPYWMA---P----EVVMC  184 (292)
T ss_pred             HHHHHHHHHHHHhcCCeeecCCCcceEEEcCC--C-CEEEccCccceeccccccccceecCCccccC---c----eeecc
Confidence            468999999999997     789999999864  2 4999999988654332 22345678999999   9    66532


Q ss_pred             -----cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          84 -----VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        84 -----~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                           ..++.              ++|..||. ..+.......+..........|..++.++.+||++||..||.+||  
T Consensus       185 ~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp--  261 (292)
T cd06644         185 ETMKDTPYDYKADIWSLGITLIEMAQIEPPHH-ELNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETRP--  261 (292)
T ss_pred             ccccCCCCCchhhhHhHHHHHHHHhcCCCCCc-cccHHHHHHHHhcCCCccCCCCcccCHHHHHHHHHHhcCCcccCc--
Confidence                 12222              78999998 666666655555211122344567899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCCCChhhhhcc
Q psy3184         145 QRGGIVDIKKHKWFQGFDWDGLRNQ  169 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~~~~~~~~  169 (185)
                         +++++++||||..+.|......
T Consensus       262 ---~~~~il~~~~~~~~~~~~~~~~  283 (292)
T cd06644         262 ---SAAQLLEHPFVSSVTSNRPLRE  283 (292)
T ss_pred             ---CHHHHhcCccccccccchhHHH
Confidence               5599999999999988875443

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.71  E-value=1e-16  Score=127.03  Aligned_cols=136  Identities=16%  Similarity=0.192  Sum_probs=102.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...|++.||.|||+.     |++|.||+++.+.   .++++|||++...... .......|++.|+|   |    |++..
T Consensus       108 ~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  177 (282)
T cd06643         108 VCKQTLEALNYLHENKIIHRDLKAGNILFTLDG---DIKLADFGVSAKNTRTIQRRDSFIGTPYWMA---P----EVVMC  177 (282)
T ss_pred             HHHHHHHHHHHHHHCCeeecCCCcccEEEccCC---CEEEccccccccccccccccccccccccccC---H----hhccc
Confidence            367999999999997     7899999998753   3999999998654332 23345678999999   9    76531


Q ss_pred             -----cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          84 -----VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        84 -----~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                           ..++.              ++|.+||. ..+..+....+..........|..++.++++||.+||..||.+||  
T Consensus       178 ~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp--  254 (282)
T cd06643         178 ETSKDRPYDYKADVWSLGITLIEMAQIEPPHH-ELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDARW--  254 (282)
T ss_pred             cCCCCCCCCccchhhhHHHHHHHHccCCCCcc-ccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhCc--
Confidence                 12222              78999998 776666655554211123345667899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~  161 (185)
                         ++.++++||||+..
T Consensus       255 ---~~~~il~~~~~~~~  268 (282)
T cd06643         255 ---TTTQLLQHPFVTVN  268 (282)
T ss_pred             ---CHHHHhcCCCEecc
Confidence               55999999999753

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.71  E-value=5e-17  Score=135.42  Aligned_cols=137  Identities=15%  Similarity=0.125  Sum_probs=94.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec--CcccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD--GKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~--~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++....  .......+||+.|+|   |    |++.
T Consensus       187 i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~---~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  256 (391)
T PHA03212        187 IERSVLRAIQYLHENRIIHRDIKAENIFINHPG---DVCLGDFGAACFPVDINANKYYGWAGTIATNA---P----ELLA  256 (391)
T ss_pred             HHHHHHHHHHHHHhCCcccCCCChHhEEEcCCC---CEEEEeCCcccccccccccccccccCccCCCC---h----hhhc
Confidence            468999999999997     8999999998753   399999999864322  123345689999999   9    8777


Q ss_pred             ccCcce--------------eccCCCCCCCCC------hHHHHHHHHh-cCCCc--------------------------
Q psy3184          83 NVGIDN--------------IFSRPPFCVMND------PMQTYNMIIN-VGIDK--------------------------  115 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~------~~~~~~~i~~-~~~~~--------------------------  115 (185)
                      ...|+.              ++|..||.....      ....+..+.. .|..+                          
T Consensus       257 ~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (391)
T PHA03212        257 RDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKP  336 (391)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccCCCC
Confidence            666664              778877752211      1111111110 00000                          


Q ss_pred             cCCC-----CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         116 IPFP-----KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       116 ~~~p-----~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      ...|     ..++.++.+||.+||..||.+||     +++++++||||+.+
T Consensus       337 ~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rp-----ta~elL~hp~f~~~  382 (391)
T PHA03212        337 GSRPLWTNLYELPIDLEYLICKMLAFDAHHRP-----SAEALLDFAAFQDI  382 (391)
T ss_pred             CCCCCHHHHhhhhhhHHHHHHHHhcCChhhCC-----CHHHHhcChhhccC
Confidence            0011     12467899999999999999999     66999999999763

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.71  E-value=8.7e-17  Score=126.42  Aligned_cols=132  Identities=19%  Similarity=0.243  Sum_probs=98.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.|+.|||++     |++|+||+++.+.   .++++|||++...... .......|++.|+|   |    |++..
T Consensus       116 ~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~---~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~a---P----E~~~~  185 (272)
T cd06637         116 ICREILRGLSHLHQHKVIHRDIKGQNVLLTENA---EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMA---P----EVIAC  185 (272)
T ss_pred             HHHHHHHHHHHHHHCCCccCCCCHHHEEECCCC---CEEEccCCCceecccccccCCcccccccccC---H----hHhcc
Confidence            478999999999998     7899999998753   3999999998866432 23345689999999   9    76642


Q ss_pred             -----cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          84 -----VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        84 -----~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                           ..|+.              ++|..||. ..........+. ........+..++.++.+|+.+||..||.+||  
T Consensus       186 ~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp--  261 (272)
T cd06637         186 DENPDATYDFKSDLWSLGITAIEMAEGAPPLC-DMHPMRALFLIP-RNPAPRLKSKKWSKKFQSFIESCLVKNHSQRP--  261 (272)
T ss_pred             ccCcCCCCCchhhHHHHHHHHHHHHhCCCCcc-ccCHHHHHHHHh-cCCCCCCCCCCcCHHHHHHHHHHcCCChhhCC--
Confidence                 12332              88999998 555544444444 11112223346789999999999999999999  


Q ss_pred             CCCChhhhhcCCCC
Q psy3184         145 QRGGIVDIKKHKWF  158 (185)
Q Consensus       145 ~~~~~~~ll~hp~f  158 (185)
                         ++.+++.||||
T Consensus       262 ---t~~~il~~~~~  272 (272)
T cd06637         262 ---TTEQLMKHPFI  272 (272)
T ss_pred             ---CHHHHhhCCCC
Confidence               55999999998

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.71  E-value=1e-16  Score=126.42  Aligned_cols=135  Identities=19%  Similarity=0.299  Sum_probs=106.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.|+.|||+.     +++|+||+++.+.   +++++|||.++..... .......|++.|+|   |    |.+..
T Consensus       103 ~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~---~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~~  172 (274)
T cd06609         103 ILREVLLGLEYLHEEGKIHRDIKAANILLSEEG---DVKLADFGVSGQLTSTMSKRNTFVGTPFWMA---P----EVIKQ  172 (274)
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCHHHEEECCCC---CEEEcccccceeecccccccccccCCccccC---h----hhhcc
Confidence            378999999999998     7899999999853   4899999999877544 33445688999999   9    87765


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCC-CCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKH-VTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~-~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ..++.              ++|..||. +.+.......+.. + ..+..+.. ++.++.+++.+||..+|.+||     +
T Consensus       173 ~~~~~~sDv~slG~il~~l~tg~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~~p~~Rp-----t  244 (274)
T cd06609         173 SGYDEKADIWSLGITAIELAKGEPPLS-DLHPMRVLFLIPK-N-NPPSLEGNKFSKPFKDFVSLCLNKDPKERP-----S  244 (274)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCcc-cCchHHHHHHhhh-c-CCCCCcccccCHHHHHHHHHHhhCChhhCc-----C
Confidence            54443              88999998 6666666555552 2 24444545 899999999999999999999     6


Q ss_pred             hhhhhcCCCCCCCC
Q psy3184         149 IVDIKKHKWFQGFD  162 (185)
Q Consensus       149 ~~~ll~hp~f~~~~  162 (185)
                      +++++.||||+...
T Consensus       245 ~~~il~~~~~~~~~  258 (274)
T cd06609         245 AKELLKHKFIKKAK  258 (274)
T ss_pred             HHHHhhChhhcCCC
Confidence            69999999998754

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>KOG0577|consensus

Probab=99.70  E-value=3e-17  Score=138.73  Aligned_cols=127  Identities=17%  Similarity=0.275  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc---
Q psy3184          12 LQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN---   83 (185)
Q Consensus        12 ~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~---   83 (185)
                      -+.+.||.|||+.     |||.+|||+...  | .|||+|||.+.+...   ..+|+|||+|||   |    |++..   
T Consensus       133 ~gaL~gLaYLHS~~~IHRDiKAGNILLse~--g-~VKLaDFGSAsi~~P---AnsFvGTPywMA---P----EVILAMDE  199 (948)
T KOG0577|consen  133 HGALQGLAYLHSHNRIHRDIKAGNILLSEP--G-LVKLADFGSASIMAP---ANSFVGTPYWMA---P----EVILAMDE  199 (948)
T ss_pred             HHHHHHHHHHHHhhHHhhhccccceEecCC--C-eeeeccccchhhcCc---hhcccCCccccc---h----hHheeccc
Confidence            3567899999997     899999999985  3 399999999987644   458999999999   9    66653   


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC-CCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP-KHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p-~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ..|+.              ...++|+. ..|.++-+..|.+  ...+..+ ..||+.+++||..||++-|++||++    
T Consensus       200 GqYdgkvDvWSLGITCIELAERkPPlF-nMNAMSALYHIAQ--NesPtLqs~eWS~~F~~Fvd~CLqKipqeRpts----  272 (948)
T KOG0577|consen  200 GQYDGKVDVWSLGITCIELAERKPPLF-NMNAMSALYHIAQ--NESPTLQSNEWSDYFRNFVDSCLQKIPQERPTS----  272 (948)
T ss_pred             cccCCccceeeccchhhhhhhcCCCcc-CchHHHHHHHHHh--cCCCCCCCchhHHHHHHHHHHHHhhCcccCCcH----
Confidence            23554              44578888 8888888888874  3455555 5699999999999999999999955    


Q ss_pred             hhhhhcCCCCC
Q psy3184         149 IVDIKKHKWFQ  159 (185)
Q Consensus       149 ~~~ll~hp~f~  159 (185)
                       ++++.|+|..
T Consensus       273 -e~ll~H~fv~  282 (948)
T KOG0577|consen  273 -EELLKHRFVL  282 (948)
T ss_pred             -HHHhhcchhc
Confidence             9999999973

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.70  E-value=8.4e-17  Score=129.35  Aligned_cols=136  Identities=15%  Similarity=0.224  Sum_probs=99.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.+....... ......+++.|+|   |    |++.+
T Consensus       109 ~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  178 (309)
T cd07872         109 FLYQILRGLAYCHRRKVLHRDLKPQNLLINERG---ELKLADFGLARAKSVPTKTYSNEVVTLWYRP---P----DVLLG  178 (309)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHEEECCCC---CEEECccccceecCCCccccccccccccccC---C----HHHhC
Confidence            367999999999998     7899999998753   39999999987654332 2334578999999   9    77654


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CC---------------CccCCC-----------CC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI---------------DKIPFP-----------KH  121 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~---------------~~~~~p-----------~~  121 (185)
                      . .++.              ++|.+||. +.+..+....+... +.               ....+|           ..
T Consensus       179 ~~~~~~~~DiwslG~il~el~tg~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (309)
T cd07872         179 SSEYSTQIDMWGVGCIFFEMASGRPLFP-GSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPR  257 (309)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccC
Confidence            2 2332              88999998 66655444333210 00               001111           24


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      ++.++++||.+||..||.+|+     ++.+++.||||+..
T Consensus       258 ~~~~~~~li~~~L~~dp~~R~-----t~~e~l~h~~~~~~  292 (309)
T cd07872         258 LDTEGIELLTKFLQYESKKRI-----SAEEAMKHAYFRSL  292 (309)
T ss_pred             CCHHHHHHHHHhccCChhhCC-----CHHHHhcChhhhhc
Confidence            789999999999999999999     66999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>KOG0659|consensus

Probab=99.70  E-value=7e-17  Score=124.91  Aligned_cols=135  Identities=16%  Similarity=0.254  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc-ccccCCccccccCCCcccccchhc-
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL-RLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~-~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      +.+++.||+|||++     |+||.|+||+++.   .+|++|||+++........ ...+-|..|.|   |    |++-+ 
T Consensus       107 ~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g---~lKiADFGLAr~f~~p~~~~~~~V~TRWYRA---P----ELLfGs  176 (318)
T KOG0659|consen  107 MLMTLKGLAYCHSKWILHRDLKPNNLLISSDG---QLKIADFGLARFFGSPNRIQTHQVVTRWYRA---P----ELLFGS  176 (318)
T ss_pred             HHHHHHHHHHHHhhhhhcccCCccceEEcCCC---cEEeecccchhccCCCCcccccceeeeeccC---h----HHhccc
Confidence            67899999999998     9999999999963   3999999999988654433 33478999999   9    97765 


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CCC-ccC---------------CC--------CCCCH
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GID-KIP---------------FP--------KHVTR  124 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~-~~~---------------~p--------~~~s~  124 (185)
                      +.|+.              +.+.+-|. |.+.-+.+..|... |.. .-.               +|        ...|.
T Consensus       177 r~Yg~~VDmWavGCI~AELllr~P~fp-G~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf~aas~  255 (318)
T KOG0659|consen  177 RQYGTGVDMWAVGCIFAELLLRVPFFP-GDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLFPAASS  255 (318)
T ss_pred             hhcCCcchhhhHHHHHHHHHccCCCCC-CCchHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCccccccccccH
Confidence            45665              66666667 66655555555411 111 011               22        23678


Q ss_pred             HHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         125 TAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       125 ~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      ++.||+.+||..||.+|+     ++.+++.|+||+..
T Consensus       256 d~ldLl~~m~~ynP~~Ri-----ta~qaL~~~yf~~~  287 (318)
T KOG0659|consen  256 DALDLLSKMLTYNPKKRI-----TASQALKHPYFKSL  287 (318)
T ss_pred             HHHHHHHhhhccCchhcc-----cHHHHhcchhhhcC
Confidence            999999999999999999     55999999999854

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.70  E-value=9.6e-17  Score=128.51  Aligned_cols=135  Identities=13%  Similarity=0.267  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ..|++.|+.|||+.     ||+|+||+++.+.   .++++|||.+....... ......|++.|+|   |    |.+...
T Consensus       121 ~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  190 (296)
T cd06655         121 CRECLQALEFLHANQVIHRDIKSDNVLLGMDG---SVKLTDFGFCAQITPEQSKRSTMVGTPYWMA---P----EVVTRK  190 (296)
T ss_pred             HHHHHHHHHHHHHCCcccCCCCHHHEEECCCC---CEEEccCccchhcccccccCCCcCCCccccC---c----chhcCC
Confidence            56899999999998     7899999998753   39999999887554332 2334678999999   9    877655


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|..||. +.+.......+...+......|..+++.+.+||.+||..||.+||     ++.
T Consensus       191 ~~~~~~Dv~slGvil~~lltg~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp-----t~~  264 (296)
T cd06655         191 AYGPKVDIWSLGIMAIEMVEGEPPYL-NENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRG-----SAK  264 (296)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhhcChhhCC-----CHH
Confidence            4433              88999998 666555444444222234455677899999999999999999999     569


Q ss_pred             hhhcCCCCCCC
Q psy3184         151 DIKKHKWFQGF  161 (185)
Q Consensus       151 ~ll~hp~f~~~  161 (185)
                      +++.||||+..
T Consensus       265 ~il~~~~~~~~  275 (296)
T cd06655         265 ELLQHPFLKLA  275 (296)
T ss_pred             HHhhChHhhhc
Confidence            99999999754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0663|consensus

Probab=99.70  E-value=6.9e-17  Score=128.48  Aligned_cols=135  Identities=19%  Similarity=0.304  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc-
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      ..|++.|++|||++     |||+.|+|+...  |. ++++|||+++.++.. ...+..+-|..|.|   |    |++.+ 
T Consensus       183 ~~QlL~glk~lH~~wilHRDLK~SNLLm~~~--G~-lKiaDFGLAR~ygsp~k~~T~lVVTLWYRa---P----ELLLG~  252 (419)
T KOG0663|consen  183 MLQLLRGLKHLHDNWILHRDLKTSNLLLSHK--GI-LKIADFGLAREYGSPLKPYTPLVVTLWYRA---P----ELLLGA  252 (419)
T ss_pred             HHHHHHHHHHHhhceeEecccchhheeeccC--Cc-EEecccchhhhhcCCcccCcceEEEeeecC---H----HHhcCC
Confidence            78999999999998     999999999984  54 999999999988665 33556778999999   9    88876 


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CCC---------------ccCCC------------C-
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GID---------------KIPFP------------K-  120 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~---------------~~~~p------------~-  120 (185)
                      ..|+.              +.+.+-|. |....+.+.+|... |..               ...+|            . 
T Consensus       253 ~tyst~iDMWSvGCI~aE~l~~kPlf~-G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~  331 (419)
T KOG0663|consen  253 KTYSTAVDMWSVGCIFAELLTQKPLFP-GKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGAL  331 (419)
T ss_pred             cccCcchhhhhHHHHHHHHHhcCCCCC-CCchHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCchhhhhhcccc
Confidence            34665              88888898 77776666666421 100               01111            1 


Q ss_pred             CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       121 ~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      .+|+...+|++++|..||.+|+     +|++.|.|.||+..
T Consensus       332 ~lse~g~~Lln~llt~dP~kR~-----tA~~~L~h~~F~e~  367 (419)
T KOG0663|consen  332 SLSEQGFDLLNKLLTYDPGKRI-----TAEDGLKHEYFRET  367 (419)
T ss_pred             ccchhHHHHHHHHhccCccccc-----cHHHhhcccccccC
Confidence            2679999999999999999999     66999999999873

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.70  E-value=4e-17  Score=129.60  Aligned_cols=139  Identities=12%  Similarity=0.198  Sum_probs=101.0

Q ss_pred             cHHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.|++|||+.      ||||+||+++++.   .++++|||.+.............|++.|+|   |    |++..
T Consensus       112 i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  181 (288)
T cd06616         112 IAVATVKALNYLKEELKIIHRDVKPSNILLDRNG---NIKLCDFGISGQLVDSIAKTRDAGCRPYMA---P----ERIDP  181 (288)
T ss_pred             HHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCC---cEEEeecchhHHhccCCccccccCccCccC---H----HHhcc
Confidence            468899999999963      7999999998753   399999999875544333344578999999   9    77654


Q ss_pred             c---Ccce--------------eccCCCCCCCCC-hHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcc
Q psy3184          84 V---GIDN--------------IFSRPPFCVMND-PMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        84 ~---~~~~--------------l~g~~Pf~~~~~-~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R  141 (185)
                      .   .++.              ++|..||. ..+ ..+....+. .+ ..+..+    ..++.++.+|+.+||..||.+|
T Consensus       182 ~~~~~~~~~~Di~slG~il~el~~g~~p~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R  258 (288)
T cd06616         182 SARDGYDVRSDVWSLGITLYEVATGKFPYP-KWNSVFDQLTQVV-KG-DPPILSNSEEREFSPSFVNFINLCLIKDESKR  258 (288)
T ss_pred             ccccCCcchhhhhHHHHHHHHHHhCCCCch-hcchHHHHHhhhc-CC-CCCcCCCcCCCccCHHHHHHHHHHccCChhhC
Confidence            4   3332              78999997 433 222223332 11 122222    3489999999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCCCChhhh
Q psy3184         142 LGYQRGGIVDIKKHKWFQGFDWDGL  166 (185)
Q Consensus       142 ~~~~~~~~~~ll~hp~f~~~~~~~~  166 (185)
                      |     ++++++.||||+...|++.
T Consensus       259 p-----t~~~i~~~~~~~~~~~~~~  278 (288)
T cd06616         259 P-----KYKELLEHPFIKDYEERNV  278 (288)
T ss_pred             c-----CHHHHhcChhhhchhhcch
Confidence            9     5599999999988776654

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.70  E-value=1e-16  Score=124.75  Aligned_cols=134  Identities=21%  Similarity=0.308  Sum_probs=101.7

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.|++.|+.|||+.     +++|+||+++.+.   .++|+|||.+....... ......|+..|++   |    |++.
T Consensus       103 ~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~  172 (256)
T cd06612         103 AILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEG---QAKLADFGVSGQLTDTMAKRNTVIGTPFWMA---P----EVIQ  172 (256)
T ss_pred             HHHHHHHHHHHHHHHCCcccCCCCcceEEECCCC---cEEEcccccchhcccCccccccccCCccccC---H----HHHh
Confidence            3478999999999987     7899999998853   38999999988765443 3344568899999   9    8776


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..++.              ++|..||. ..+.......+..........+..++.++.++|.+||..||.+||     +
T Consensus       173 ~~~~~~~~Di~s~G~il~~l~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp-----s  246 (256)
T cd06612         173 EIGYNNKADIWSLGITAIEMAEGKPPYS-DIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERP-----S  246 (256)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCC-CcchhhhhhhhccCCCCCCCchhhcCHHHHHHHHHHHhcChhhCc-----C
Confidence            655543              88999998 655544443333111123344556889999999999999999999     5


Q ss_pred             hhhhhcCCCC
Q psy3184         149 IVDIKKHKWF  158 (185)
Q Consensus       149 ~~~ll~hp~f  158 (185)
                      +.+++.||||
T Consensus       247 ~~~il~~~~~  256 (256)
T cd06612         247 AIQLLQHPFI  256 (256)
T ss_pred             HHHHhcCCCC
Confidence            6999999997

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.70  E-value=1.6e-16  Score=123.64  Aligned_cols=132  Identities=13%  Similarity=0.172  Sum_probs=105.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ...|++.|++|||++     |++|+||+++.+.  ..++++|||.+.............|++.|+|   |    |++...
T Consensus       106 ~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~--~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  176 (256)
T cd08220         106 FFVQILLALHHVHTKLILHRDLKTQNILLDKHK--MVVKIGDFGISKILSSKSKAYTVVGTPCYIS---P----ELCEGK  176 (256)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCC--CEEEEccCCCceecCCCccccccccCCcccC---c----hhccCC
Confidence            357999999999998     7899999998642  2479999999987766555556788999999   9    776654


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|..||. +.+.......+.. + ....+|..++.++++++.+||..+|.+||     ++.
T Consensus       177 ~~~~~~Dv~slG~~l~~l~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-----t~~  248 (256)
T cd08220         177 PYNQKSDIWALGCVLYELASLKRAFE-AANLPALVLKIMS-G-TFAPISDRYSPDLRQLILSMLNLDPSKRP-----QLS  248 (256)
T ss_pred             CCCcccchHHHHHHHHHHHhCCCCcc-cCchHHHHHHHHh-c-CCCCCCCCcCHHHHHHHHHHccCChhhCC-----CHH
Confidence            4332              78999998 7777777666662 2 24456777999999999999999999999     559


Q ss_pred             hhhcCCCC
Q psy3184         151 DIKKHKWF  158 (185)
Q Consensus       151 ~ll~hp~f  158 (185)
                      +++.||||
T Consensus       249 ~ll~~p~~  256 (256)
T cd08220         249 QIMAQPIC  256 (256)
T ss_pred             HHhhCCCC
Confidence            99999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.70  E-value=9.2e-17  Score=126.22  Aligned_cols=132  Identities=17%  Similarity=0.282  Sum_probs=99.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC----cccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG----KILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~----~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.|++.||+|||++     +++|+||+++.+.   .++|+|||.+..+...    .......|+..|+|   |    |.
T Consensus       111 ~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  180 (266)
T cd06651         111 YTRQILEGMSYLHSNMIVHRDIKGANILRDSAG---NVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMS---P----EV  180 (266)
T ss_pred             HHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCC---CEEEccCCCccccccccccCCccccCCccccccC---H----HH
Confidence            378999999999998     7899999998753   3899999998755321    12234568899999   9    77


Q ss_pred             hhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      +.+..++.              ++|..||. ..+.......+. .....+.+|..++..+++++ +|+..+|.+||    
T Consensus       181 ~~~~~~~~~~Dv~slG~i~~el~~g~~pf~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp----  253 (266)
T cd06651         181 ISGEGYGRKADVWSLGCTVVEMLTEKPPWA-EYEAMAAIFKIA-TQPTNPQLPSHISEHARDFL-GCIFVEARHRP----  253 (266)
T ss_pred             hCCCCCCchhhhHHHHHHHHHHHHCCCCcc-ccchHHHHHHHh-cCCCCCCCchhcCHHHHHHH-HHhcCChhhCc----
Confidence            76554433              88999998 555444444444 22245677788899999999 56678999999    


Q ss_pred             CChhhhhcCCCCC
Q psy3184         147 GGIVDIKKHKWFQ  159 (185)
Q Consensus       147 ~~~~~ll~hp~f~  159 (185)
                       +++++++||||+
T Consensus       254 -~~~eil~hp~~~  265 (266)
T cd06651         254 -SAEELLRHPFAQ  265 (266)
T ss_pred             -CHHHHhcCcccc
Confidence             669999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.69  E-value=2.3e-16  Score=122.31  Aligned_cols=132  Identities=23%  Similarity=0.486  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ..|++.|+.|+|+.     +++|+||+++.+.   .++++|||.+...... .......++..|++   |    |.+...
T Consensus        99 ~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~---~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~---P----e~~~~~  168 (250)
T cd05123          99 AAEIVLALEYLHSLGIIYRDLKPENILLDADG---HIKLTDFGLAKELSSEGSRTNTFCGTPEYLA---P----EVLLGK  168 (250)
T ss_pred             HHHHHHHHHHHHHCCceecCCCcceEEEcCCC---cEEEeecCcceecccCCCcccCCcCCccccC---h----HHhCCC
Confidence            67899999999998     7899999998853   3899999998766543 33455678999999   9    776544


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|..||. ..+.......+.   .....+|..++.++.+++++||..||.+||+...  ++
T Consensus       169 ~~~~~~D~~slG~~~~~l~~g~~p~~-~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~--~~  242 (250)
T cd05123         169 GYGKAVDWWSLGVLLYEMLTGKPPFY-AEDRKEIYEKIL---KDPLRFPEFLSPEARDLISGLLQKDPTKRLGSGG--AE  242 (250)
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHh---cCCCCCCCCCCHHHHHHHHHHhcCCHhhCCCccc--HH
Confidence            3322              88999998 777777777777   2467888889999999999999999999994422  48


Q ss_pred             hhhcCCCC
Q psy3184         151 DIKKHKWF  158 (185)
Q Consensus       151 ~ll~hp~f  158 (185)
                      +++.||||
T Consensus       243 ~l~~~~~f  250 (250)
T cd05123         243 EIKAHPFF  250 (250)
T ss_pred             HHHhCCCC
Confidence            99999998

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0607|consensus

Probab=99.69  E-value=7.1e-17  Score=127.98  Aligned_cols=138  Identities=21%  Similarity=0.306  Sum_probs=108.2

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--------ccccccCCccccccCCCc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--------ILRLLSGRPPFCVMNDPM   75 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--------~~~~~~gt~~y~a~~~P~   75 (185)
                      ....+|+.||.+||.+     |+||+|||.....+-.-+|++||.+...+..+.        ...+.+|+..|||   | 
T Consensus       180 ~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMA---P-  255 (463)
T KOG0607|consen  180 RVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMA---P-  255 (463)
T ss_pred             HHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcc---h-
Confidence            3456789999999998     789999999876555569999998877665432        2345789999999   9 


Q ss_pred             ccccchhc-----cCcce--------------eccCCCCCCCC---C------------hHHHHHHHHhcCCCccCCCC-
Q psy3184          76 QTYNMIIN-----VGIDN--------------IFSRPPFCVMN---D------------PMQTYNMIINVGIDKIPFPK-  120 (185)
Q Consensus        76 ~~~E~~~~-----~~~~~--------------l~g~~Pf~~~~---~------------~~~~~~~i~~~~~~~~~~p~-  120 (185)
                         |++..     .-|+.              +.|.+||. |.   |            .+.+++.|. .|  .+.||+ 
T Consensus       256 ---EVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFv-G~Cg~dCGWdrGe~Cr~CQ~~LFesIQ-EG--kYeFPdk  328 (463)
T KOG0607|consen  256 ---EVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFV-GHCGADCGWDRGEVCRVCQNKLFESIQ-EG--KYEFPDK  328 (463)
T ss_pred             ---hHHhhhccccccccccccHHHHHHHHHHHHhCCCCcc-CccCCcCCccCCCccHHHHHHHHHHHh-cc--CCcCChh
Confidence               87652     12443              99999997 32   1            245677777 44  999994 


Q ss_pred             ---CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCC
Q psy3184         121 ---HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       121 ---~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~  162 (185)
                         .+|.+++++|..+|.+|+.+|+     ++..+++|||++...
T Consensus       329 dWahIS~eakdlisnLlvrda~~rl-----sa~~vlnhPw~~~~~  368 (463)
T KOG0607|consen  329 DWAHISSEAKDLISNLLVRDAKQRL-----SAAQVLNHPWVQRCA  368 (463)
T ss_pred             hhHHhhHHHHHHHHHHHhccHHhhh-----hhhhccCCccccccc
Confidence               5899999999999999999999     669999999997654

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.69  E-value=2.7e-16  Score=122.37  Aligned_cols=130  Identities=15%  Similarity=0.213  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      +.|++.||.|||+.     +++|+||+++.+.   .++++|||.++...... .....+|++.|+|   |    |++...
T Consensus       107 ~~~l~~al~~lH~~~i~h~dl~~~nili~~~~---~~~l~df~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  176 (256)
T cd08529         107 FIQILLGLAHLHSKKILHRDIKSLNLFLDAYD---NVKIGDLGVAKLLSDNTNFANTIVGTPYYLS---P----ELCEDK  176 (256)
T ss_pred             HHHHHHHHHHHHHCCcccCCCCcceEEEeCCC---CEEEcccccceeccCccchhhccccCccccC---H----HHhcCC
Confidence            56999999999998     7899999999853   39999999988665432 3345678999999   9    877655


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|..||. ..+.......+. .+ ....++..++.++.+++.+|+..+|++||     ++.
T Consensus       177 ~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp-----~~~  248 (256)
T cd08529         177 PYNEKSDVWALGVVLYECCTGKHPFD-ANNQGALILKII-RG-VFPPVSQMYSQQLAQLIDQCLTKDYRQRP-----DTF  248 (256)
T ss_pred             CCCCccchHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHH-cC-CCCCCccccCHHHHHHHHHHccCCcccCc-----CHH
Confidence            4433              88999998 777777777776 22 24455567899999999999999999999     559


Q ss_pred             hhhcCCCC
Q psy3184         151 DIKKHKWF  158 (185)
Q Consensus       151 ~ll~hp~f  158 (185)
                      +++.|||+
T Consensus       249 ~ll~~~~~  256 (256)
T cd08529         249 QLLRNPSL  256 (256)
T ss_pred             HHhhCCCC
Confidence            99999985

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.69  E-value=1.6e-16  Score=123.78  Aligned_cols=131  Identities=15%  Similarity=0.234  Sum_probs=105.0

Q ss_pred             cHHHHHHHHHHHh-----hc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc-cccccCCccccccCCCcccc
Q psy3184          10 DTLQVKEMVESMH-----QA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI-LRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus        10 ~~~qi~~~l~~lH-----~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~-~~~~~gt~~y~a~~~P~~~~   78 (185)
                      .+.||+.||.|||     +.     |++|+||+++.+  + .++++|||.+........ .....|++.|+|   |    
T Consensus       110 ~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~--~-~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~---p----  179 (265)
T cd08217         110 ILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDAN--N-NVKLGDFGLAKILGHDSSFAKTYVGTPYYMS---P----  179 (265)
T ss_pred             HHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecC--C-CEEEecccccccccCCcccccccccCCCccC---h----
Confidence            3689999999999     65     899999999985  3 499999999987765443 445679999999   9    


Q ss_pred             cchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          79 NMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        79 E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      |++....++.              ++|..||. ..+.......+. .+ ....+|..++.++.+++.+||..+|.+||  
T Consensus       180 E~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp--  254 (265)
T cd08217         180 EQLNHMSYDEKSDIWSLGCLIYELCALSPPFT-ARNQLQLASKIK-EG-KFRRIPYRYSSELNEVIKSMLNVDPDKRP--  254 (265)
T ss_pred             hhhcCCCCCchhHHHHHHHHHHHHHHCCCccc-CcCHHHHHHHHh-cC-CCCCCccccCHHHHHHHHHHccCCcccCC--
Confidence            7776544433              88999998 777666666666 22 23456778899999999999999999999  


Q ss_pred             CCCChhhhhcCCCC
Q psy3184         145 QRGGIVDIKKHKWF  158 (185)
Q Consensus       145 ~~~~~~~ll~hp~f  158 (185)
                         ++++++.|||+
T Consensus       255 ---~~~~il~~~~~  265 (265)
T cd08217         255 ---STEELLQLPLI  265 (265)
T ss_pred             ---CHHHHhhCCCC
Confidence               55999999995

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.69  E-value=1.2e-16  Score=126.29  Aligned_cols=138  Identities=17%  Similarity=0.262  Sum_probs=101.4

Q ss_pred             cHHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.|++|||++      |+||+||+++.+.   +++++|||.+..+..........|+..|+|   |    |++.+
T Consensus       108 ~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  177 (283)
T cd06617         108 IAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNG---QVKLCDFGISGYLVDSVAKTIDAGCKPYMA---P----ERINP  177 (283)
T ss_pred             HHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCC---CEEEeecccccccccccccccccCCccccC---h----hhcCC
Confidence            468999999999975      7899999998853   499999999886644333334678999999   9    76543


Q ss_pred             ----cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC-CCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          84 ----VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP-KHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        84 ----~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p-~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                          ..++.              ++|..||....+..+....+.. + ....+| ..+|.++.++|.+||..+|.+||  
T Consensus       178 ~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp--  253 (283)
T cd06617         178 ELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVE-E-PSPQLPAEKFSPEFQDFVNKCLKKNYKERP--  253 (283)
T ss_pred             cccccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHHh-c-CCCCCCccccCHHHHHHHHHHccCChhhCc--
Confidence                22222              8899999722333343444441 1 234444 45899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCCCChh
Q psy3184         145 QRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~~~  164 (185)
                         ++++++.||||....++
T Consensus       254 ---~~~~il~~~~~~~~~~~  270 (283)
T cd06617         254 ---NYPELLQHPFFELHLSK  270 (283)
T ss_pred             ---CHHHHhcCchhhhcccc
Confidence               55999999999876544

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.69  E-value=1.3e-16  Score=127.68  Aligned_cols=136  Identities=14%  Similarity=0.266  Sum_probs=102.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.||.|||+.     ||+|+||+++.+.   .++++|||.+....... ......|++.|+|   |    |.+..
T Consensus       121 i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  190 (296)
T cd06654         121 VCRECLQALEFLHSNQVIHRDIKSDNILLGMDG---SVKLTDFGFCAQITPEQSKRSTMVGTPYWMA---P----EVVTR  190 (296)
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCC---CEEECccccchhccccccccCcccCCccccC---H----HHHcC
Confidence            356899999999998     7899999998753   48999999887554322 2334578999999   9    87765


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. ..+.......+...+......|..++..+.+++.+||..||++||     ++
T Consensus       191 ~~~~~~~Dv~s~Gvil~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-----t~  264 (296)
T cd06654         191 KAYGPKVDIWSLGIMAIEMIEGEPPYL-NENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRG-----SA  264 (296)
T ss_pred             CCCCccchHHHHHHHHHHHHhCCCCCC-CCCHHHhHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcccCc-----CH
Confidence            44433              88999998 666544433333122223345667899999999999999999999     56


Q ss_pred             hhhhcCCCCCCC
Q psy3184         150 VDIKKHKWFQGF  161 (185)
Q Consensus       150 ~~ll~hp~f~~~  161 (185)
                      .+++.||||...
T Consensus       265 ~eil~~~~~~~~  276 (296)
T cd06654         265 KELLQHQFLKIA  276 (296)
T ss_pred             HHHhhChhhhcc
Confidence            999999999653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.69  E-value=1.7e-16  Score=125.55  Aligned_cols=140  Identities=18%  Similarity=0.230  Sum_probs=105.8

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.|++.|+.|||+.     |++|+||+++.+.   .++++|||.+...... .......|++.|++   |    |++.
T Consensus       107 ~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~---~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~  176 (280)
T cd06611         107 YVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDG---DVKLADFGVSAKNKSTLQKRDTFIGTPYWMA---P----EVVA  176 (280)
T ss_pred             HHHHHHHHHHHHHHHCCcccCCCChhhEEECCCC---CEEEccCccchhhcccccccceeecchhhcC---H----HHHh
Confidence            3478999999999987     7899999998753   3999999987654332 23345678999999   9    7654


Q ss_pred             c-----cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          83 N-----VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        83 ~-----~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                      .     ..++.              ++|.+||. +.+.......+..........|..++.++.++|.+||..+|.+|| 
T Consensus       177 ~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-  254 (280)
T cd06611         177 CETFKDNPYDYKADIWSLGITLIELAQMEPPHH-ELNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRP-  254 (280)
T ss_pred             hcccCCCCCCccccHHHHHHHHHHHHhCCCCcc-cCCHHHHHHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhCc-
Confidence            2     22221              88999998 777766666666211123345667899999999999999999999 


Q ss_pred             CCCCChhhhhcCCCCCCCChh
Q psy3184         144 YQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       144 ~~~~~~~~ll~hp~f~~~~~~  164 (185)
                          +++++++||||+.....
T Consensus       255 ----s~~~il~~~~~~~~~~~  271 (280)
T cd06611         255 ----TAAELLKHPFVSDQSDN  271 (280)
T ss_pred             ----CHHHHhcChhhcccchh
Confidence                56999999999877544

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.69  E-value=2e-16  Score=124.10  Aligned_cols=131  Identities=14%  Similarity=0.186  Sum_probs=101.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-------cccccccCCccccccCCCccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-------KILRLLSGRPPFCVMNDPMQT   77 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-------~~~~~~~gt~~y~a~~~P~~~   77 (185)
                      .+.|++.||+|||++     |++|+||+++.+.   .++++|||.++.....       .......|+..|+|   |   
T Consensus       111 ~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---p---  181 (267)
T cd06628         111 FVRQILKGLNYLHNRGIIHRDIKGANILVDNKG---GIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMA---P---  181 (267)
T ss_pred             HHHHHHHHHHHHHhcCcccccCCHHHEEEcCCC---CEEecccCCCcccccccccCCccccccccCCCcCccC---h---
Confidence            468999999999988     7899999998753   3899999998766432       11224568899999   9   


Q ss_pred             ccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          78 YNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        78 ~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                       |.+....++.              ++|..||. ..+.......+. . .....+|..++.++.++|++||..||.+|| 
T Consensus       182 -e~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-  256 (267)
T cd06628         182 -EVVKQTSYTRKADIWSLGCLVVEMLTGKHPFP-DCTQLQAIFKIG-E-NASPEIPSNISSEAIDFLEKTFEIDHNKRP-  256 (267)
T ss_pred             -hHhccCCCCchhhhHHHHHHHHHHhhCCCCCC-CccHHHHHHHHh-c-cCCCcCCcccCHHHHHHHHHHccCCchhCc-
Confidence             7766544433              88999998 655544444444 1 235567778999999999999999999999 


Q ss_pred             CCCCChhhhhcCCCC
Q psy3184         144 YQRGGIVDIKKHKWF  158 (185)
Q Consensus       144 ~~~~~~~~ll~hp~f  158 (185)
                          ++.+++.||||
T Consensus       257 ----~~~~il~~~~~  267 (267)
T cd06628         257 ----TAAELLKHPFL  267 (267)
T ss_pred             ----CHHHHhhCCCC
Confidence                56999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>KOG4645|consensus

Probab=99.69  E-value=5.5e-17  Score=146.31  Aligned_cols=138  Identities=17%  Similarity=0.302  Sum_probs=112.6

Q ss_pred             hhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-----cccccccCCccccccCCCc
Q psy3184           6 LKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-----KILRLLSGRPPFCVMNDPM   75 (185)
Q Consensus         6 ~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-----~~~~~~~gt~~y~a~~~P~   75 (185)
                      +-+.+..|++.|+.|||+.     |+||.||+++.+  | .||+.|||.+..+..+     .......|||.|||   | 
T Consensus      1335 vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~--g-~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMA---P- 1407 (1509)
T KOG4645|consen 1335 VTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFN--G-LIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMA---P- 1407 (1509)
T ss_pred             HHHHHHHHHHHHHHHHHhcCceecCCCccceeeecC--C-cEEeecccceeEecCchhcCCHHHHhhcCCchhcC---c-
Confidence            4466789999999999997     889999999986  3 3999999999877553     34567899999999   9 


Q ss_pred             ccccchhcc---Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCc
Q psy3184          76 QTYNMIINV---GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESP  138 (185)
Q Consensus        76 ~~~E~~~~~---~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp  138 (185)
                         |++.+.   +...              ++|+.||..-++.-++..++. -| -.+.+|+.+|.+.++||..||..||
T Consensus      1408 ---Evit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~-~g-h~Pq~P~~ls~~g~dFle~Cl~~dP 1482 (1509)
T KOG4645|consen 1408 ---EVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVA-AG-HKPQIPERLSSEGRDFLEHCLEQDP 1482 (1509)
T ss_pred             ---hhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHh-cc-CCCCCchhhhHhHHHHHHHHHhcCc
Confidence               888753   2222              999999985555556666655 22 5789999999999999999999999


Q ss_pred             CcccCCCCCChhhhhcCCCCCC
Q psy3184         139 AERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       139 ~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                      .+|.     ++.+|+.|.|-+.
T Consensus      1483 ~~Rw-----~~~qlle~~f~~~ 1499 (1509)
T KOG4645|consen 1483 KMRW-----TASQLLEHAFGKS 1499 (1509)
T ss_pred             hhhh-----HHHHHHHhhcccc
Confidence            9998     6689999998753

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.69  E-value=2.4e-16  Score=125.38  Aligned_cols=136  Identities=11%  Similarity=0.146  Sum_probs=103.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     |+||+||+++.+.   .++++|||.++.......   .....++..|+|   |    |++
T Consensus       124 ~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~---~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~---p----E~~  193 (288)
T cd05061         124 MAAEIADGMAYLNAKKFVHRDLAARNCMVAHDF---TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMA---P----ESL  193 (288)
T ss_pred             HHHHHHHHHHHHHhCCCcCCCCChheEEEcCCC---cEEECcCCccccccccccccccCCCcccccccC---H----HHh
Confidence            468999999999998     7899999998853   389999999875432211   112345678999   9    877


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. +.+..+....+.. + .....|...+.++++++.+||..||.+||+   
T Consensus       194 ~~~~~~~~~DvwslG~~l~el~~~~~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps---  267 (288)
T cd05061         194 KDGVFTTSSDMWSFGVVLWEITSLAEQPYQ-GLSNEQVLKFVMD-G-GYLDQPDNCPERVTDLMRMCWQFNPKMRPT---  267 (288)
T ss_pred             ccCCCChHhHHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHHc-C-CCCCCCCCCCHHHHHHHHHHcCCChhHCcC---
Confidence            6544443              33 789998 7777777776662 2 345667778999999999999999999994   


Q ss_pred             CChhhhhc------CCCCCCCCh
Q psy3184         147 GGIVDIKK------HKWFQGFDW  163 (185)
Q Consensus       147 ~~~~~ll~------hp~f~~~~~  163 (185)
                        +.++++      ||||++++|
T Consensus       268 --~~~ll~~l~~~~~~~~~~~~~  288 (288)
T cd05061         268 --FLEIVNLLKDDLHPSFPEVSF  288 (288)
T ss_pred             --HHHHHHHHHhhcCCCCCCCCC
Confidence              477665      999999998

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.69  E-value=2.2e-16  Score=125.65  Aligned_cols=134  Identities=15%  Similarity=0.168  Sum_probs=99.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.||+|||+.     |++|+||+++.+.   .++|+|||.+....... ......|+..|+|   |    |++..
T Consensus       133 ~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  202 (291)
T cd06639         133 ILYGALLGLQHLHNNRIIHRDVKGNNILLTTEG---GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMA---P----EVIAC  202 (291)
T ss_pred             HHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCC---CEEEeecccchhcccccccccCccCCccccC---h----hhhcC
Confidence            467899999999997     7899999998753   38999999987654332 2334578899999   9    76542


Q ss_pred             cC-----cce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          84 VG-----IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        84 ~~-----~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ..     ++.              ++|.+||. ..+.......+..........|..++.++.+||.+||..+|++||  
T Consensus       203 ~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp--  279 (291)
T cd06639         203 EQQYDYSYDARCDVWSLGITAIELGDGDPPLF-DMHPVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARP--  279 (291)
T ss_pred             CCCcccccCCccchHHHHHHHHHHhhCCCCCC-CCcHHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHhhcChhhCc--
Confidence            11     111              78999998 666555555554211122344566889999999999999999999  


Q ss_pred             CCCChhhhhcCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQ  159 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~  159 (185)
                         ++.+++.||||+
T Consensus       280 ---s~~~il~~~~~~  291 (291)
T cd06639         280 ---SVTHLLEHPFIK  291 (291)
T ss_pred             ---CHHHHhcCcccC
Confidence               669999999995

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.69  E-value=2.5e-16  Score=124.75  Aligned_cols=135  Identities=15%  Similarity=0.234  Sum_probs=100.3

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.|++.|++|||+.     ||||+||+++.+.   .++|+|||++..+... .....+|+..|+|   |    |++..
T Consensus        99 ~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~---~~~l~dfg~~~~~~~~-~~~~~~~~~~y~a---P----E~~~~  167 (279)
T cd06619          99 RIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRG---QVKLCDFGVSTQLVNS-IAKTYVGTNAYMA---P----ERISG  167 (279)
T ss_pred             HHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCC---CEEEeeCCcceecccc-cccCCCCChhhcC---c----eeecC
Confidence            3578999999999998     7899999998853   3999999998765432 3345689999999   9    77765


Q ss_pred             cCcce--------------eccCCCCCCCCC-------hHHHHHHHHhcCCCccCCC-CCCCHHHHHHHHHHhhcCcCcc
Q psy3184          84 VGIDN--------------IFSRPPFCVMND-------PMQTYNMIINVGIDKIPFP-KHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~-------~~~~~~~i~~~~~~~~~~p-~~~s~~~~~li~~~l~~dp~~R  141 (185)
                      ..++.              ++|..||. ...       .......+. .. .....+ ...+.++++++.+||..||.+|
T Consensus       168 ~~~~~~~DvwslG~~l~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~li~~~l~~~P~~R  244 (279)
T cd06619         168 EQYGIHSDVWSLGISFMELALGRFPYP-QIQKNQGSLMPLQLLQCIV-DE-DPPVLPVGQFSEKFVHFITQCMRKQPKER  244 (279)
T ss_pred             CCCCCcchHHHHHHHHHHHHhCCCCch-hhcccccccchHHHHHHHh-cc-CCCCCCCCcCCHHHHHHHHHHhhCChhhC
Confidence            54443              78999996 321       122233333 11 222333 3578999999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCCCC
Q psy3184         142 LGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       142 ~~~~~~~~~~ll~hp~f~~~~  162 (185)
                      |     ++++++.||||+..+
T Consensus       245 p-----~~~eil~~~~~~~~~  260 (279)
T cd06619         245 P-----APENLMDHPFIVQYN  260 (279)
T ss_pred             C-----CHHHHhcCccccccc
Confidence            9     669999999997653

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.69  E-value=2.1e-16  Score=126.45  Aligned_cols=137  Identities=15%  Similarity=0.202  Sum_probs=99.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||+.     ||||+||+++.+.   .++++|||++...... .......+++.|+|   |    |++.+
T Consensus       109 ~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~~  178 (301)
T cd07873         109 FLFQLLRGLNYCHRRKVLHRDLKPQNLLINERG---ELKLADFGLARAKSIPTKTYSNEVVTLWYRP---P----DILLG  178 (301)
T ss_pred             HHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCC---cEEECcCcchhccCCCCCcccccceeecccC---c----HHHhC
Confidence            467999999999998     7999999998853   3999999998765432 22334567899999   9    77654


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhcC----------------CCccCCC-----------CC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVG----------------IDKIPFP-----------KH  121 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~----------------~~~~~~p-----------~~  121 (185)
                      . .++.              ++|.+||. +.+..+....+...-                .....+|           ..
T Consensus       179 ~~~~~~~~Dv~slG~~l~el~tg~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (301)
T cd07873         179 STDYSTQIDMWGVGCIFYEMSTGRPLFP-GSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPR  257 (301)
T ss_pred             CCCCccHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcCC
Confidence            2 2322              88999998 766655443332100                0011122           24


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~  162 (185)
                      +++++++||.+||..||.+||     ++.+++.||||+.+.
T Consensus       258 ~~~~~~~li~~ml~~dp~~R~-----t~~eil~h~~f~~~~  293 (301)
T cd07873         258 LDSDGAELLSKLLQFEGRKRI-----SAEEAMKHPYFHCLG  293 (301)
T ss_pred             CCHHHHHHHHHHhcCCcccCc-----CHHHHhcCccccccc
Confidence            788999999999999999999     669999999997653

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.69  E-value=1.7e-16  Score=125.23  Aligned_cols=132  Identities=20%  Similarity=0.279  Sum_probs=97.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.||+|||+.     +++|+||+++.   + .++|+|||.+..+..........+++.|+|   |    |.+...
T Consensus       105 ~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~---~-~~kl~dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  173 (282)
T cd07831         105 YMYQLLKSLDHMHRNGIFHRDIKPENILIKD---D-ILKLADFGSCRGIYSKPPYTEYISTRWYRA---P----ECLLTD  173 (282)
T ss_pred             HHHHHHHHHHHHHHCCceecccCHHHEEEcC---C-CeEEEecccccccccCCCcCCCCCCcccCC---h----hHhhcC
Confidence            368999999999998     78999999998   2 499999999987655444445678999999   9    765432


Q ss_pred             C-cce--------------eccCCCCCCCCChHHHHHHHHhc-C--------------CCccCCC-----------CCCC
Q psy3184          85 G-IDN--------------IFSRPPFCVMNDPMQTYNMIINV-G--------------IDKIPFP-----------KHVT  123 (185)
Q Consensus        85 ~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~--------------~~~~~~p-----------~~~s  123 (185)
                      . ++.              ++|.+||. +.+..+.+..+... +              .....+|           ..++
T Consensus       174 ~~~~~~~Di~slGv~l~el~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (282)
T cd07831         174 GYYGPKMDIWAVGCVFFEILSLFPLFP-GTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNAS  252 (282)
T ss_pred             CCCCcchhHHHHHHHHHHHHcCCcCCC-CCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHccccc
Confidence            2 222              77999998 76655544433210 0              0111222           2468


Q ss_pred             HHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         124 RTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       124 ~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      .++.++|.+||..+|.+||     ++++++.||||
T Consensus       253 ~~~~~li~~~l~~~P~~R~-----~~~~~l~~~~~  282 (282)
T cd07831         253 AEGLDLLKKLLAYDPDERI-----TAKQALRHPYF  282 (282)
T ss_pred             HHHHHHHHHHhccCccccc-----CHHHHhhCCCC
Confidence            9999999999999999999     66999999998

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.69  E-value=1e-16  Score=128.37  Aligned_cols=136  Identities=13%  Similarity=0.258  Sum_probs=102.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.||.|||+.     ||+|+||+++.+.   .++++|||.+....... ......|++.|+|   |    |.+..
T Consensus       120 ~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~---~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  189 (297)
T cd06656         120 VCRECLQALDFLHSNQVIHRDIKSDNILLGMDG---SVKLTDFGFCAQITPEQSKRSTMVGTPYWMA---P----EVVTR  189 (297)
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCHHHEEECCCC---CEEECcCccceEccCCccCcCcccCCccccC---H----HHHcC
Confidence            357899999999987     7899999998753   49999999987664432 2334678999999   9    87765


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. +.+.......+...+......|..++..+++|+.+||..||.+||     ++
T Consensus       190 ~~~~~~~Di~slGvil~~l~tg~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~  263 (297)
T cd06656         190 KAYGPKVDIWSLGIMAIEMVEGEPPYL-NENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRG-----SA  263 (297)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCC-CCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccCChhhCc-----CH
Confidence            54433              88999998 655443332222122233445677899999999999999999999     56


Q ss_pred             hhhhcCCCCCCC
Q psy3184         150 VDIKKHKWFQGF  161 (185)
Q Consensus       150 ~~ll~hp~f~~~  161 (185)
                      ++++.||||+..
T Consensus       264 ~~il~~~~~~~~  275 (297)
T cd06656         264 KELLQHPFLKLA  275 (297)
T ss_pred             HHHhcCchhccc
Confidence            999999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.68  E-value=2.5e-16  Score=124.32  Aligned_cols=134  Identities=19%  Similarity=0.329  Sum_probs=100.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||+.     |++|+||+++.+.  ..++++|||.+......   ....|+..|+|   |    |++.+.
T Consensus       114 ~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~--~~~~l~dfg~~~~~~~~---~~~~~~~~y~a---P----E~~~~~  181 (267)
T PHA03390        114 IIRQLVEALNDLHKHNIIHNDIKLENVLYDRAK--DRIYLCDYGLCKIIGTP---SCYDGTLDYFS---P----EKIKGH  181 (267)
T ss_pred             HHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCC--CeEEEecCccceecCCC---ccCCCCCcccC---h----hhhcCC
Confidence            478999999999998     7899999998863  24999999998766432   24578999999   9    887665


Q ss_pred             Ccce--------------eccCCCCCCCCChHHH-HHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQT-YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~-~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .++.              ++|..||. ....... ...+..........+..+|..+.+||.+||..+|.+|++.    +
T Consensus       182 ~~~~~~DvwslG~il~~l~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~----~  256 (267)
T PHA03390        182 NYDVSFDWWAVGVLTYELLTGKHPFK-EDEDEELDLESLLKRQQKKLPFIKNVSKNANDFVQSMLKYNINYRLTN----Y  256 (267)
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCC-CCCcchhhHHHHHHhhcccCCcccccCHHHHHHHHHHhccChhhCCch----H
Confidence            5553              88999997 4433221 1111111123445556799999999999999999999931    4


Q ss_pred             hhhhcCCCCCC
Q psy3184         150 VDIKKHKWFQG  160 (185)
Q Consensus       150 ~~ll~hp~f~~  160 (185)
                      +++++||||++
T Consensus       257 ~~~l~h~~~~~  267 (267)
T PHA03390        257 NEIIKHPFLKI  267 (267)
T ss_pred             HHHhcCCcccC
Confidence            99999999974

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.68  E-value=1.6e-16  Score=124.19  Aligned_cols=130  Identities=22%  Similarity=0.369  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc-----cccccCCccccccCCCcccccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI-----LRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~-----~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ..|++.|+.|||+.     +++|+||+++.+.   .++++|||.+........     .....|+..|++   |    |+
T Consensus       108 ~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~---~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~---P----e~  177 (267)
T cd06610         108 LKEVLKGLEYLHSNGQIHRDIKAGNILLGEDG---SVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMA---P----EV  177 (267)
T ss_pred             HHHHHHHHHHHHhCCeecCCCCHHhEEEcCCC---CEEEcccchHHHhccCccccccccccccCChhhcC---h----HH
Confidence            67999999999998     7899999998853   389999999876544322     244578999999   9    76


Q ss_pred             hhcc-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC-----CCCCHHHHHHHHHHhhcCcCc
Q psy3184          81 IINV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP-----KHVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        81 ~~~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p-----~~~s~~~~~li~~~l~~dp~~  140 (185)
                      +... .++.              ++|..||. ..+..+.+..+...  ....++     ..++.++.+++.+||..||.+
T Consensus       178 ~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  254 (267)
T cd06610         178 MEQVHGYDFKADIWSFGITAIELATGAAPYS-KYPPMKVLMLTLQN--DPPSLETGADYKKYSKSFRKMISLCLQKDPSK  254 (267)
T ss_pred             HccccCcCcccchHhHhHHHHHHHhCCCCcc-ccChhhhHHHHhcC--CCCCcCCccccccccHHHHHHHHHHcCCChhh
Confidence            5543 2222              88999998 77766666666522  122222     257899999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCC
Q psy3184         141 RLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       141 R~~~~~~~~~~ll~hp~f  158 (185)
                      ||     ++++++.||||
T Consensus       255 Rp-----~~~~ll~~p~~  267 (267)
T cd06610         255 RP-----TAEELLKHKFF  267 (267)
T ss_pred             Cc-----CHHHHhhCCCC
Confidence            99     66999999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.68  E-value=3.5e-16  Score=121.70  Aligned_cols=132  Identities=17%  Similarity=0.272  Sum_probs=102.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.|+.|||+.     +++|+||+++.+.   .++++|||.+.............|++.|++   |    |.+...
T Consensus       107 ~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~---~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~---p----e~~~~~  176 (258)
T cd06632         107 YTRQILLGLEYLHDRNTVHRDIKGANILVDTNG---VVKLADFGMAKQVVEFSFAKSFKGSPYWMA---P----EVIAQQ  176 (258)
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCHHHEEECCCC---CEEEccCccceeccccccccccCCCcceeC---H----HHhcCC
Confidence            367899999999987     7899999998753   499999999887655544556778999999   9    766543


Q ss_pred             C-cce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 G-IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      . ++.              ++|..||. .....+....+. .......+|..++.++.+++++||..+|.+||     ++
T Consensus       177 ~~~~~~~D~~slG~~l~~l~~g~~pf~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----~~  249 (258)
T cd06632         177 GGYGLAADIWSLGCTVLEMATGKPPWS-QLEGVAAVFKIG-RSKELPPIPDHLSDEAKDFILKCLQRDPSLRP-----TA  249 (258)
T ss_pred             CCCCchhhhHHHHHHHHHHHhCCCCcc-cCcHHHHHHHHH-hcccCCCcCCCcCHHHHHHHHHHhhcCcccCc-----CH
Confidence            3 332              88999997 544444444444 21234566778899999999999999999999     56


Q ss_pred             hhhhcCCCC
Q psy3184         150 VDIKKHKWF  158 (185)
Q Consensus       150 ~~ll~hp~f  158 (185)
                      .+++.|||+
T Consensus       250 ~~~l~~~~~  258 (258)
T cd06632         250 AELLEHPFV  258 (258)
T ss_pred             HHHhcCCCC
Confidence            999999996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.68  E-value=2.5e-16  Score=123.51  Aligned_cols=133  Identities=15%  Similarity=0.223  Sum_probs=98.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...|++.||+|||+.     +++|+||+++.+.   .++|+|||.+...... .......|++.|+|   |    |++..
T Consensus       118 ~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~---~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  187 (275)
T cd06608         118 ILRETLRGLAYLHENKVIHRDIKGQNILLTKNA---EVKLVDFGVSAQLDSTLGRRNTFIGTPYWMA---P----EVIAC  187 (275)
T ss_pred             HHHHHHHHHHHHhcCCcccCCCCHHHEEEccCC---eEEECCCccceecccchhhhcCccccccccC---H----hHhcc
Confidence            467999999999998     7899999998753   4999999998765432 23345678999999   9    76542


Q ss_pred             c-----Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          84 V-----GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        84 ~-----~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      .     .++.              ++|..||. ..+.......+..........+..++.++++||.+||..||.+||  
T Consensus       188 ~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp--  264 (275)
T cd06608         188 DEQPDASYDARSDVWSLGITAIELADGKPPLC-DMHPMRALFKIPRNPPPTLKSPENWSKKFNDFISECLIKNYEQRP--  264 (275)
T ss_pred             cccccCCccccccHHHhHHHHHHHHhCCCCcc-ccchHHHHHHhhccCCCCCCchhhcCHHHHHHHHHHhhcChhhCc--
Confidence            1     1211              78999998 655555555554221122333345789999999999999999999  


Q ss_pred             CCCChhhhhcCCCC
Q psy3184         145 QRGGIVDIKKHKWF  158 (185)
Q Consensus       145 ~~~~~~~ll~hp~f  158 (185)
                         ++.+++.|||+
T Consensus       265 ---t~~~ll~~~~~  275 (275)
T cd06608         265 ---FMEELLEHPFI  275 (275)
T ss_pred             ---CHHHHhcCCCC
Confidence               66999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.68  E-value=2.9e-16  Score=134.66  Aligned_cols=142  Identities=13%  Similarity=0.107  Sum_probs=98.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.+....  .....+||+.|+|   |    |++.
T Consensus       272 i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~~---~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  341 (501)
T PHA03210        272 IMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDG---KIVLGDFGTAMPFEKEREAFDYGWVGTVATNS---P----EILA  341 (501)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEECCCC---CEEEEeCCCceecCcccccccccccCCcCCCC---c----hhhc
Confidence            478999999999998     8999999998853   39999999998765432  2334689999999   9    8887


Q ss_pred             ccCcce--------------eccC-CCCCCC-CChHHHHHHHHhc-CCCccCCC--------------------------
Q psy3184          83 NVGIDN--------------IFSR-PPFCVM-NDPMQTYNMIINV-GIDKIPFP--------------------------  119 (185)
Q Consensus        83 ~~~~~~--------------l~g~-~Pf~~~-~~~~~~~~~i~~~-~~~~~~~p--------------------------  119 (185)
                      +..|+.              ++|. +||..+ .+....+..+... +.....+|                          
T Consensus       342 ~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~  421 (501)
T PHA03210        342 GDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLI  421 (501)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHH
Confidence            766655              5554 455411 1222222222100 00011111                          


Q ss_pred             --CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhh
Q psy3184         120 --KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGL  166 (185)
Q Consensus       120 --~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~  166 (185)
                        ..++.++.++|.+||..||.+||     ++.+++.||||.......+
T Consensus       422 ~~~~~~~~~~~li~kmL~~DP~~Rp-----sa~elL~hp~f~~~~~~~~  465 (501)
T PHA03210        422 RNLGLPADFEYPLVKMLTFDWHLRP-----GAAELLALPLFSAEEEEEI  465 (501)
T ss_pred             HhcCCChHHHHHHHHHhccCcccCc-----CHHHHhhChhhhcCCchHH
Confidence              13567888999999999999999     6699999999987665543

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.68  E-value=2.8e-16  Score=123.16  Aligned_cols=132  Identities=17%  Similarity=0.252  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-------CcccccccCCccccccCCCcccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-------GKILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-------~~~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      +.|++.|+.|||+.     +|+|.||+++.+.   .++++|||.+.....       ........|+..|+|   |    
T Consensus       108 ~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p----  177 (265)
T cd06631         108 TKQILDGVAYLHNNCVVHRDIKGNNVMLMPNG---IIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMA---P----  177 (265)
T ss_pred             HHHHHHHHHHHHhCCcccCCcCHHhEEECCCC---eEEeccchhhHhhhhccccccccccccccCCCccccC---h----
Confidence            57999999999997     7899999998753   499999998865422       122334678999999   9    


Q ss_pred             cchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          79 NMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        79 E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      |++....++.              ++|..||. ..+.......+.......+..|..++.++.++|++||..+|.+||  
T Consensus       178 e~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp--  254 (265)
T cd06631         178 EVINESGYGRKSDIWSIGCTVFEMATGKPPLA-SMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHERP--  254 (265)
T ss_pred             hhhcCCCCcchhhHHHHHHHHHHHHhCCCccc-cCChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccCC--
Confidence            8776554443              88999998 655444433333111123456678999999999999999999999  


Q ss_pred             CCCChhhhhcCCCC
Q psy3184         145 QRGGIVDIKKHKWF  158 (185)
Q Consensus       145 ~~~~~~~ll~hp~f  158 (185)
                         ++.+++.||||
T Consensus       255 ---~~~~~l~~~~~  265 (265)
T cd06631         255 ---SALQLLRHDFL  265 (265)
T ss_pred             ---CHHHHhcCCCC
Confidence               55999999997

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.68  E-value=1.8e-16  Score=129.12  Aligned_cols=133  Identities=14%  Similarity=0.195  Sum_probs=96.4

Q ss_pred             cHHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.||.|||+.      ||||+||+++.+.   .++|+|||++..... .......|++.|+|   |    |++.+
T Consensus       108 ~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~---~~kL~Dfg~~~~~~~-~~~~~~~~~~~y~a---P----E~~~~  176 (333)
T cd06650         108 VSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRG---EIKLCDFGVSGQLID-SMANSFVGTRSYMS---P----ERLQG  176 (333)
T ss_pred             HHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCC---CEEEeeCCcchhhhh-hccccCCCCccccC---H----HHhcC
Confidence            467899999999963      8999999998753   399999999875532 22345679999999   9    87765


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHH-------------------------------------------
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYN-------------------------------------------  106 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~-------------------------------------------  106 (185)
                      ..++.              ++|..||. ..+......                                           
T Consensus       177 ~~~~~~~DvwslG~il~~l~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (333)
T cd06650         177 THYSVQSDIWSMGLSLVEMAIGRYPIP-PPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFELL  255 (333)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCC-CcchhHHHHHhcCcccCCccccccCcccCCccchhhhhcccccccccHHHHH
Confidence            54443              88999997 444332211                                           


Q ss_pred             -HHHhcCCCccCCC-CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         107 -MIINVGIDKIPFP-KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       107 -~i~~~~~~~~~~p-~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                       .+.+  ...+.++ ..++.++++||.+||..||.+||     ++.+++.||||+..
T Consensus       256 ~~~~~--~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rp-----t~~ell~h~~~~~~  305 (333)
T cd06650         256 DYIVN--EPPPKLPSGVFGAEFQDFVNKCLIKNPAERA-----DLKQLMVHAFIKRS  305 (333)
T ss_pred             HHHhc--CCCccCCCCCcCHHHHHHHHHhccCCcccCc-----CHHHHhhCHHHhcC
Confidence             1110  0112222 24688999999999999999999     66999999999764

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.67  E-value=2.6e-16  Score=122.89  Aligned_cols=132  Identities=19%  Similarity=0.319  Sum_probs=103.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ...||+.||.|||++     +++|.||+++.+.   .++++|||.+.............|+..|+|   |    |++...
T Consensus       105 ~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~---~~~l~d~~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~~~  174 (258)
T cd05578         105 WICEIVLALEYLHSKGIIHRDIKPDNILLDEQG---HVHITDFNIATKVTPDTLTTSTSGTPGYMA---P----EVLCRQ  174 (258)
T ss_pred             HHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCC---CEEEeecccccccCCCccccccCCChhhcC---H----HHHccc
Confidence            467999999999997     7899999998853   389999999876655444455678999999   9    776654


Q ss_pred             Ccce--------------eccCCCCCCCCC---hHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMND---PMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~---~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .++.              ++|..||. ..+   .........   .....+|..++.++.++|.+||..||.+|++.   
T Consensus       175 ~~~~~~Di~slG~~l~~l~~g~~p~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~---  247 (258)
T cd05578         175 GYSVAVDWWSLGVTAYECLRGKRPYR-GHSRTIRDQIRAKQE---TADVLYPATWSTEAIDAINKLLERDPQKRLGD---  247 (258)
T ss_pred             CCCCcccchhhHHHHHHHHhCCCCCC-CCCccHHHHHHHHhc---cccccCcccCcHHHHHHHHHHccCChhHcCCc---
Confidence            4332              88999998 655   334433333   14667778899999999999999999999944   


Q ss_pred             ChhhhhcCCCC
Q psy3184         148 GIVDIKKHKWF  158 (185)
Q Consensus       148 ~~~~ll~hp~f  158 (185)
                      .+.+++.||||
T Consensus       248 ~~~~l~~~~~~  258 (258)
T cd05578         248 NLKDLKNHPYF  258 (258)
T ss_pred             cHHHHhcCCCC
Confidence            14999999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.67  E-value=2.4e-16  Score=124.76  Aligned_cols=131  Identities=17%  Similarity=0.221  Sum_probs=96.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...||+.|+.|||+.     +++|+||+++.+.   .++++|||.+...... .......|++.|+|   |    |++..
T Consensus       126 ~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~l~~  195 (282)
T cd06636         126 ICREILRGLAHLHAHKVIHRDIKGQNVLLTENA---EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMA---P----EVIAC  195 (282)
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCHHHEEECCCC---CEEEeeCcchhhhhccccCCCcccccccccC---H----hhcCc
Confidence            356899999999998     7899999998753   3899999988755322 23345678999999   9    76542


Q ss_pred             -----cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccC-CCCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          84 -----VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIP-FPKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        84 -----~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~-~p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                           ..|+.              ++|..||. ..........+. .. .... .+..++.++.+||.+||..||.+|| 
T Consensus       196 ~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-  271 (282)
T cd06636         196 DENPDATYDYRSDIWSLGITAIEMAEGAPPLC-DMHPMRALFLIP-RN-PPPKLKSKKWSKKFIDFIEGCLVKNYLSRP-  271 (282)
T ss_pred             ccCcCcCCCcccchhHHHHHHHHHHhCCCCcc-ccCHHhhhhhHh-hC-CCCCCcccccCHHHHHHHHHHhCCChhhCc-
Confidence                 22322              88999998 555444444343 11 1222 2245899999999999999999999 


Q ss_pred             CCCCChhhhhcCCCC
Q psy3184         144 YQRGGIVDIKKHKWF  158 (185)
Q Consensus       144 ~~~~~~~~ll~hp~f  158 (185)
                          ++.+++.||||
T Consensus       272 ----~~~ell~~~~~  282 (282)
T cd06636         272 ----STEQLLKHPFI  282 (282)
T ss_pred             ----CHHHHhcCCCC
Confidence                55999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.67  E-value=2.8e-16  Score=133.41  Aligned_cols=135  Identities=13%  Similarity=0.140  Sum_probs=93.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||+++......   .....+||+.|+|   |    |++
T Consensus       265 i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~---~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~A---P----E~~  334 (461)
T PHA03211        265 VARQLLSAIDYIHGEGIIHRDIKTENVLVNGPE---DICLGDFGAACFARGSWSTPFHYGIAGTVDTNA---P----EVL  334 (461)
T ss_pred             HHHHHHHHHHHHHHCCEEECcCCHHHEEECCCC---CEEEcccCCceecccccccccccccCCCcCCcC---H----HHH
Confidence            478999999999998     8999999998753   38999999988654321   1234679999999   9    877


Q ss_pred             hccCcce--------------eccCCCCCCCC-------ChHHHHHHHHhcCC-CccCCC--------------------
Q psy3184          82 INVGIDN--------------IFSRPPFCVMN-------DPMQTYNMIINVGI-DKIPFP--------------------  119 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~-------~~~~~~~~i~~~~~-~~~~~p--------------------  119 (185)
                      .+..|+.              ++|..|+....       ...++.+.+. ... ....+|                    
T Consensus       335 ~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  413 (461)
T PHA03211        335 AGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIR-QAQVHVDEFPQHAGSRLVSQYRHRAARNRR  413 (461)
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHH-hhccccccCCCCcchHHHHHHHhhhhcccC
Confidence            6665554              44444332121       1122333332 110 000111                    


Q ss_pred             -----------CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         120 -----------KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       120 -----------~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                                 ..++.++.+||.+||..||.+||     ++.++|+||||++
T Consensus       414 ~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RP-----sa~elL~hp~f~~  460 (461)
T PHA03211        414 PAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRP-----SAAELLRLPLFQS  460 (461)
T ss_pred             CccCCcchhhhccccchHHHHHHHHcccChhhCc-----CHHHHhhCcccCC
Confidence                       13567899999999999999999     6699999999974

>KOG0594|consensus

Probab=99.67  E-value=2e-16  Score=126.26  Aligned_cols=140  Identities=18%  Similarity=0.256  Sum_probs=106.9

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      -+.-..||+.||.|||++     ||||+|++|+..  |. +|++|||+++....+ ....+-++|..|.|   |    |+
T Consensus       122 ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~--G~-lKlaDFGlAra~~ip~~~yt~evvTlWYRa---P----Ev  191 (323)
T KOG0594|consen  122 IKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSS--GV-LKLADFGLARAFSIPMRTYTPEVVTLWYRA---P----EV  191 (323)
T ss_pred             HHHHHHHHHHHHHHHHhCCeecccCCcceEEECCC--Cc-EeeeccchHHHhcCCcccccccEEEeeccC---H----HH
Confidence            344578999999999998     899999999994  43 999999999966644 34566788999999   9    98


Q ss_pred             hhcc-Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CCC--------------ccCCC-----------
Q psy3184          81 IINV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GID--------------KIPFP-----------  119 (185)
Q Consensus        81 ~~~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~--------------~~~~p-----------  119 (185)
                      +.+. .|+.              +++++-|. +....+....|... |..              ...+|           
T Consensus       192 LlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFp-G~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~  270 (323)
T KOG0594|consen  192 LLGSTSYSTSVDIWSLGCIFAEMFTRRPLFP-GDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSI  270 (323)
T ss_pred             hcCCCcCCCCcchHhHHHHHHHHHhCCCCCC-CCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHh
Confidence            8875 5665              77888888 77666666555411 110              01122           


Q ss_pred             -CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCC
Q psy3184         120 -KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       120 -~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~  162 (185)
                       ...++++.+++.+||..+|.+|.     +++..+.||||....
T Consensus       271 ~~~~~~~~~dll~~~L~y~p~~R~-----Sa~~al~h~yf~~~~  309 (323)
T KOG0594|consen  271 LPKLDPDGIELLSKLLQYDPAKRI-----SAKGALTHPYFSELP  309 (323)
T ss_pred             ccccCccHHHHHHHHhccCcccCc-----CHHHHhcChhhcccc
Confidence             12346899999999999999999     779999999998763

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.67  E-value=5e-16  Score=120.44  Aligned_cols=131  Identities=19%  Similarity=0.308  Sum_probs=104.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.|+.|||+.     |++|+||+++.+  + +++++|||.+....... ......|++.|+|   |    |....
T Consensus       108 i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~--~-~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~---p----e~~~~  177 (258)
T cd08215         108 WFVQLCLALKYLHSRKILHRDIKPQNIFLTSN--G-LVKLGDFGISKVLSSTVDLAKTVVGTPYYLS---P----ELCQN  177 (258)
T ss_pred             HHHHHHHHHHHHHhCCEecccCChHHeEEcCC--C-cEEECCccceeecccCcceecceeeeecccC---h----hHhcc
Confidence            367999999999998     789999999874  2 49999999988665543 3345678999999   9    76655


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. ..+..+....+.. . .....|..++.++.+++.+||..+|.+||     ++
T Consensus       178 ~~~~~~~Dv~slG~~~~~l~~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp-----~~  249 (258)
T cd08215         178 KPYNYKSDIWSLGCVLYELCTLKHPFE-GENLLELALKILK-G-QYPPIPSQYSSELRNLVSSLLQKDPEERP-----SI  249 (258)
T ss_pred             CCCCccccHHHHHHHHHHHHcCCCCCC-CCcHHHHHHHHhc-C-CCCCCCCCCCHHHHHHHHHHcCCChhhCc-----CH
Confidence            44333              78999998 7777777776662 2 34556678899999999999999999999     55


Q ss_pred             hhhhcCCCC
Q psy3184         150 VDIKKHKWF  158 (185)
Q Consensus       150 ~~ll~hp~f  158 (185)
                      .+++.||||
T Consensus       250 ~~ll~~~~~  258 (258)
T cd08215         250 AQILQSPFI  258 (258)
T ss_pred             HHHhcCCCC
Confidence            999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.67  E-value=4.8e-16  Score=121.18  Aligned_cols=130  Identities=19%  Similarity=0.288  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      +.|++.|+.|||++     +++|+||+++.+.   .++++|||.+....... ......|++.|+|   |    |++.+.
T Consensus       107 ~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~---~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~---p----e~~~~~  176 (256)
T cd08218         107 FVQICLALKHVHDRKILHRDIKSQNIFLTKDG---TIKLGDFGIARVLNSTVELARTCIGTPYYLS---P----EICENR  176 (256)
T ss_pred             HHHHHHHHHHHHhCCEecCCCCHHHEEEcCCC---CEEEeeccceeecCcchhhhhhccCCccccC---H----HHhCCC
Confidence            57999999999988     7899999998753   38999999998664432 2234568899999   9    766544


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|..||. ..+..+....+. .+ .....|..++.++.++|.+||..+|.+||     ++.
T Consensus       177 ~~~~~~Dv~slG~i~~~l~~g~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----~~~  248 (256)
T cd08218         177 PYNNKSDIWALGCVLYEMCTLKHAFE-AGNMKNLVLKII-RG-SYPPVSSHYSYDLRNLVSQLFKRNPRDRP-----SVN  248 (256)
T ss_pred             CCCCccchhHHHHHHHHHHcCCCCcc-CCCHHHHHHHHh-cC-CCCCCcccCCHHHHHHHHHHhhCChhhCc-----CHH
Confidence            3322              88999998 777777776666 22 34456778899999999999999999999     669


Q ss_pred             hhhcCCCC
Q psy3184         151 DIKKHKWF  158 (185)
Q Consensus       151 ~ll~hp~f  158 (185)
                      +++.||||
T Consensus       249 ~vl~~~~~  256 (256)
T cd08218         249 SILEKNFI  256 (256)
T ss_pred             HHhhCcCC
Confidence            99999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.67  E-value=5.5e-16  Score=123.32  Aligned_cols=136  Identities=18%  Similarity=0.282  Sum_probs=102.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...|++.|+.|||++     +|+|.||+++.+.   .++++|||.+...... .......|++.|+|   |    |++..
T Consensus       120 ~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~---~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  189 (285)
T cd06648         120 VCLAVLKALSFLHAQGVIHRDIKSDSILLTSDG---RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMA---P----EVISR  189 (285)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCChhhEEEcCCC---cEEEcccccchhhccCCcccccccCCccccC---H----HHhcC
Confidence            468899999999998     7899999998753   4899999987654332 22334678999999   9    87765


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. ..+.......+..........+..++..+.+|+.+||..+|.+||     ++
T Consensus       190 ~~~~~~~Dv~slGv~l~ell~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-----t~  263 (285)
T cd06648         190 LPYGTEVDIWSLGIMVIEMVDGEPPYF-NEPPLQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRA-----TA  263 (285)
T ss_pred             CCCCCcccHHHHHHHHHHHHhCCCCCc-CCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhhCc-----CH
Confidence            44433              88999998 777666666665211112222344789999999999999999999     55


Q ss_pred             hhhhcCCCCCCC
Q psy3184         150 VDIKKHKWFQGF  161 (185)
Q Consensus       150 ~~ll~hp~f~~~  161 (185)
                      .+++.|+||+..
T Consensus       264 ~~il~~~~~~~~  275 (285)
T cd06648         264 AELLNHPFLAKA  275 (285)
T ss_pred             HHHccCcccccC
Confidence            999999999764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>KOG0606|consensus

Probab=99.67  E-value=8.8e-17  Score=142.84  Aligned_cols=156  Identities=28%  Similarity=0.484  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----------------ccccccCCcccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----------------ILRLLSGRPPFC   69 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----------------~~~~~~gt~~y~   69 (185)
                      ..+++.+++|+|+.     ++||+|.+|..=  |+ +++.|||+.+......                .....||||.|.
T Consensus       149 Pvdmvla~Eylh~ygivhrdlkpdnllIT~m--Gh-iKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyi  225 (1205)
T KOG0606|consen  149 PVDMVLAVEYLHSYGIVHRDLKPDNLLITSM--GH-IKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYI  225 (1205)
T ss_pred             cchhhHHhHhhccCCeecCCCCCCcceeeec--cc-ccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCcccc
Confidence            35668999999997     789999999983  43 9999999987443211                112469999999


Q ss_pred             ccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC---CCCHHHHHHHHH
Q psy3184          70 VMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK---HVTRTAQSLIKA  132 (185)
Q Consensus        70 a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~---~~s~~~~~li~~  132 (185)
                      |   |    |++..++|+.              +.|..||. ++++++++..++   .+.+.+|+   .+.+|++++|.+
T Consensus       226 a---P----eVilrqgygkpvdwwamGiIlyeFLVgcvpff-Gdtpeelfg~vi---sd~i~wpE~dea~p~Ea~dli~~  294 (1205)
T KOG0606|consen  226 A---P----EVILRQGYGKPVDWWAMGIILYEFLVGCVPFF-GDTPEELFGQVI---SDDIEWPEEDEALPPEAQDLIEQ  294 (1205)
T ss_pred             C---h----hhhhhhccCCCccHHHHHHHHHHHheeeeecc-CCCHHHHHhhhh---hhhccccccCcCCCHHHHHHHHH
Confidence            9   9    9998888876              89999999 999999999988   45677774   578999999999


Q ss_pred             HhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         133 LCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       133 ~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      +|+.+|..|.+.  +++-+++.|+||+.+||..|..+  ..+|+|.+....|
T Consensus       295 LL~qnp~~Rlgt--~ga~evk~h~ff~~LDw~~llRq--kaefvpql~~edd  342 (1205)
T KOG0606|consen  295 LLRQNPLCRLGT--GGALEVKQHGFFQLLDWKSLLRQ--KAEFVPQLESEDD  342 (1205)
T ss_pred             HHHhChHhhccc--chhhhhhhccceeecccchhhhh--hcccccccccccc
Confidence            999999999976  37788999999999999999888  4568887776554

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.67  E-value=3.3e-16  Score=125.18  Aligned_cols=136  Identities=17%  Similarity=0.279  Sum_probs=102.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.|+.|||++     ||+|+||+++.+.   .++++|||++...... .......|++.|+|   |    |++..
T Consensus       123 ~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~---~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  192 (292)
T cd06658         123 VCLSVLRALSYLHNQGVIHRDIKSDSILLTSDG---RIKLSDFGFCAQVSKEVPKRKSLVGTPYWMA---P----EVISR  192 (292)
T ss_pred             HHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCC---CEEEccCcchhhcccccccCceeecCccccC---H----HHHcc
Confidence            468899999999987     7899999998753   3899999988654322 22345678999999   9    87765


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. ..+.......+...-.........++..+.+++.+|+..||.+||     ++
T Consensus       193 ~~~~~~~Dv~slGvil~el~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp-----t~  266 (292)
T cd06658         193 LPYGTEVDIWSLGIMVIEMIDGEPPYF-NEPPLQAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRA-----TA  266 (292)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHhcCCCccccccccCHHHHHHHHHHccCChhHCc-----CH
Confidence            44443              88999998 666665555544111112222245789999999999999999999     56


Q ss_pred             hhhhcCCCCCCC
Q psy3184         150 VDIKKHKWFQGF  161 (185)
Q Consensus       150 ~~ll~hp~f~~~  161 (185)
                      ++++.||||+..
T Consensus       267 ~~il~~~~~~~~  278 (292)
T cd06658         267 QELLQHPFLKLA  278 (292)
T ss_pred             HHHhhChhhhcc
Confidence            999999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.67  E-value=2e-16  Score=123.82  Aligned_cols=133  Identities=14%  Similarity=0.214  Sum_probs=100.0

Q ss_pred             cHHHHHHHHHHHhh-c-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQ-A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~-~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...|++.|+.|+|+ .     +++|+||+++.+  + .++|+|||.+..+..... ....|+..|++   |    |.+.+
T Consensus       105 ~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~--~-~~~l~d~g~~~~~~~~~~-~~~~~~~~y~~---P----E~~~~  173 (265)
T cd06605         105 IAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSR--G-QIKLCDFGVSGQLVNSLA-KTFVGTSSYMA---P----ERIQG  173 (265)
T ss_pred             HHHHHHHHHHHHcCCCCeecCCCCHHHEEECCC--C-CEEEeecccchhhHHHHh-hcccCChhccC---H----HHHcC
Confidence            46799999999999 5     799999999985  3 399999998875533222 23788999999   9    87765


Q ss_pred             cCcce--------------eccCCCCCCC----CChHHHHHHHHhcCCCccCCCCC-CCHHHHHHHHHHhhcCcCcccCC
Q psy3184          84 VGIDN--------------IFSRPPFCVM----NDPMQTYNMIINVGIDKIPFPKH-VTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~----~~~~~~~~~i~~~~~~~~~~p~~-~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ..++.              ++|..||...    ....+....+. . ...+..|.. ++.+++++|.+||..||.+||  
T Consensus       174 ~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp--  249 (265)
T cd06605         174 NDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIV-N-EPPPRLPSGKFSPDFQDFVNLCLIKDPRERP--  249 (265)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHh-c-CCCCCCChhhcCHHHHHHHHHHcCCCchhCc--
Confidence            54443              7899999722    12334444444 1 134455544 899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQG  160 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~  160 (185)
                         ++.+++.||||+.
T Consensus       250 ---t~~~ll~~~~~~~  262 (265)
T cd06605         250 ---SYKELLEHPFIKK  262 (265)
T ss_pred             ---CHHHHhhCchhhc
Confidence               5699999999964

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.66  E-value=8.3e-16  Score=123.46  Aligned_cols=136  Identities=14%  Similarity=0.190  Sum_probs=99.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||+.     ||+|+||+++.+.   .++|+|||.+....... ......+++.|+|   |    |++.+
T Consensus       113 ~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~---~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  182 (309)
T cd07845         113 LMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKG---CLKIADFGLARTYGLPAKPMTPKVVTLWYRA---P----ELLLG  182 (309)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEECCCC---CEEECccceeeecCCccCCCCcccccccccC---h----hhhcC
Confidence            478999999999998     7899999998753   49999999998765432 2223345788999   9    77653


Q ss_pred             -cCcce--------------eccCCCCCCCCChHHHHHHHHhcCC----------------CccCCC-----------CC
Q psy3184          84 -VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI----------------DKIPFP-----------KH  121 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~----------------~~~~~p-----------~~  121 (185)
                       ..++.              ++|.+||. +.+..+.+..+.+...                .....+           ..
T Consensus       183 ~~~~~~~~DvwslG~il~el~~g~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (309)
T cd07845         183 CTTYTTAIDMWAVGCILAELLAHKPLLP-GKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPW  261 (309)
T ss_pred             CCCcCchHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhccc
Confidence             22332              88999998 7777776665542100                001111           12


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      ++.++.+||.+||..||.+||     ++++++.||||+..
T Consensus       262 ~~~~~~~li~~ml~~dp~~R~-----t~~~il~h~~f~~~  296 (309)
T cd07845         262 LSEAGLRLLNFLLMYDPKKRA-----TAEEALESSYFKEK  296 (309)
T ss_pred             cCHHHHHHHHHHhcCChhhCc-----CHHHHhcChhhccC
Confidence            589999999999999999999     66999999999743

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.66  E-value=2e-16  Score=122.64  Aligned_cols=129  Identities=18%  Similarity=0.301  Sum_probs=97.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.||+|||+.     |+||+||+++.+.   .+++.|||.+......  .....++..|+|   |    |.+...
T Consensus        90 ~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~---~~~l~df~~~~~~~~~--~~~~~~~~~y~a---P----E~~~~~  157 (237)
T cd05576          90 WAAEMVVALDALHREGIVCRDLNPNNILLDDRG---HIQLTYFSRWSEVEDS--CDGEAVENMYCA---P----EVGGIS  157 (237)
T ss_pred             HHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCC---CEEEecccchhccccc--cccCCcCccccC---C----cccCCC
Confidence            367999999999997     7899999999853   3899999987654332  234456778999   9    776544


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|..||. .... .    +.  ......+|..++.+++++|.+||..||.+|++....+++
T Consensus       158 ~~~~~~DvwslG~il~el~~g~~~~~-~~~~-~----~~--~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~  229 (237)
T cd05576         158 EETEACDWWSLGAILFELLTGKTLVE-CHPS-G----IN--THTTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVE  229 (237)
T ss_pred             CCCchhhHHHHHHHHHHHHHCcchhh-cCch-h----cc--cccccCCcccCCHHHHHHHHHHccCCHHHhcCCCccchH
Confidence            4433              77888775 3221 1    11  112456778899999999999999999999987666789


Q ss_pred             hhhcCCCC
Q psy3184         151 DIKKHKWF  158 (185)
Q Consensus       151 ~ll~hp~f  158 (185)
                      ++++||||
T Consensus       230 ~~~~h~~~  237 (237)
T cd05576         230 DIKSHPFF  237 (237)
T ss_pred             HHHcCCCC
Confidence            99999998

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.66  E-value=1.8e-16  Score=117.31  Aligned_cols=126  Identities=14%  Similarity=0.159  Sum_probs=92.1

Q ss_pred             cHHHHHHHHHHHhhcCCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhccCcce-
Q psy3184          10 DTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVGIDN-   88 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~-   88 (185)
                      .+.||+.||+|||+.+ ||+||+++.+.   .+++  ||.++.....    ...||+.|||   |    |++.+..|+. 
T Consensus        22 i~~qi~~~L~~lH~~~-kp~Nil~~~~~---~~~~--fG~~~~~~~~----~~~g~~~y~a---P----E~~~~~~~~~~   84 (176)
T smart00750       22 VCLQCLRALRELHRQA-KSGNILLTWDG---LLKL--DGSVAFKTPE----QSRVDPYFMA---P----EVIQGQSYTEK   84 (176)
T ss_pred             HHHHHHHHHHHHHhcC-CcccEeEcCcc---ceee--ccceEeeccc----cCCCcccccC---h----HHhcCCCCcch
Confidence            4689999999999998 99999998763   2666  9988766443    2368999999   9    8887766655 


Q ss_pred             -------------eccCCCCCCCCC-hHHHHHHHHhcCCCcc-----CCCCCCCH--HHHHHHHHHhhcCcCcccCCCCC
Q psy3184          89 -------------IFSRPPFCVMND-PMQTYNMIINVGIDKI-----PFPKHVTR--TAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        89 -------------l~g~~Pf~~~~~-~~~~~~~i~~~~~~~~-----~~p~~~s~--~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                                   ++|..||. ... .......+. .+....     ..+..++.  +++++|.+||..||.+||     
T Consensus        85 ~DiwSlG~il~elltg~~p~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp-----  157 (176)
T smart00750       85 ADIYSLGITLYEALDYELPYN-EERELSAILEILL-NGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQRRE-----  157 (176)
T ss_pred             hhHHHHHHHHHHHHhCCCCcc-ccchhcHHHHHHH-HHhccCCccccccHHHHHhhhhHHHHHHHHHhccccccc-----
Confidence                         88999997 433 233444443 111111     11223444  799999999999999999     


Q ss_pred             ChhhhhcCCCCC
Q psy3184         148 GIVDIKKHKWFQ  159 (185)
Q Consensus       148 ~~~~ll~hp~f~  159 (185)
                      ++.+++.|+|+.
T Consensus       158 ~~~~ll~~~~~~  169 (176)
T smart00750      158 AANHYLAHCRAL  169 (176)
T ss_pred             CHHHHHHHHHHH
Confidence            559999999874

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.66  E-value=8.6e-16  Score=120.10  Aligned_cols=130  Identities=18%  Similarity=0.291  Sum_probs=102.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.|+.|||+.     +++|+||+++.+    .++++|||.+...... .......|++.|+|   |    |.+..
T Consensus       111 ~~~~l~~~l~~lH~~~i~h~~l~~~nili~~~----~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~---p----e~~~~  179 (260)
T cd08222         111 WFIQLLLGVHYMHQRRILHRDLKAKNIFLKNN----LLKIGDFGVSRLLMGSCDLATTFTGTPYYMS---P----EALKH  179 (260)
T ss_pred             HHHHHHHHHHHHHHcCccccCCChhheEeecC----CEeecccCceeecCCCcccccCCCCCcCccC---H----HHHcc
Confidence            367899999999998     789999999763    2899999998766443 23345678999999   9    77655


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. +.+.......+. .+ ..+..|..++.++.++|.+|+..||++||     ++
T Consensus       180 ~~~~~~~Dv~slG~~~~~l~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----~~  251 (260)
T cd08222         180 QGYDSKSDIWSLGCILYEMCCLAHAFE-GQNFLSVVLRIV-EG-PTPSLPETYSRQLNSIMQSMLNKDPSLRP-----SA  251 (260)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHH-cC-CCCCCcchhcHHHHHHHHHHhcCChhhCc-----CH
Confidence            44432              78999998 776666666665 22 34556677899999999999999999999     55


Q ss_pred             hhhhcCCCC
Q psy3184         150 VDIKKHKWF  158 (185)
Q Consensus       150 ~~ll~hp~f  158 (185)
                      .+++.||||
T Consensus       252 ~~il~~~~~  260 (260)
T cd08222         252 AEILRNPFI  260 (260)
T ss_pred             HHHhhCCCC
Confidence            999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.66  E-value=5.2e-16  Score=125.64  Aligned_cols=136  Identities=15%  Similarity=0.209  Sum_probs=102.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||.|||+.     ||||.||+++.+  + .++|+|||.+.......    ......+++.|+|   |    |+
T Consensus       108 i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~--~-~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  177 (330)
T cd07834         108 FLYQILRGLKYLHSANVIHRDLKPSNILVNSN--C-DLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRA---P----EL  177 (330)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEEcCC--C-CEEEcccCceEeecccccccccccccccccCcCC---c----ee
Confidence            578999999999998     789999999986  3 49999999998776543    2445678999999   9    76


Q ss_pred             hhcc-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCcc----------------------------C
Q psy3184          81 IINV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKI----------------------------P  117 (185)
Q Consensus        81 ~~~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~----------------------------~  117 (185)
                      +.+. .++.              ++|.+||. +.+..+.+..+......+.                            .
T Consensus       178 ~~~~~~~~~~sDi~slG~il~~l~~g~~pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (330)
T cd07834         178 LLSSSRYTKAIDIWSVGCIFAELLTRKPLFP-GRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSK  256 (330)
T ss_pred             eecccCCCcchhHHHHHHHHHHHHcCCCCcC-CCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHH
Confidence            6554 3332              78999998 7776666555542110000                            0


Q ss_pred             CCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       118 ~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      ....++.++.+||.+||..+|.+||     ++++++.||||++.
T Consensus       257 ~~~~~~~~~~~li~~~l~~~P~~Rp-----t~~~ll~~~~~~~~  295 (330)
T cd07834         257 LFPGASPEAIDLLEKMLVFDPKKRI-----TADEALAHPYLAQL  295 (330)
T ss_pred             hcccCCHHHHHHHHHHccCChhhCC-----CHHHHHhCccHHhh
Confidence            1123688999999999999999999     56999999999764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0600|consensus

Probab=99.66  E-value=4.7e-16  Score=129.13  Aligned_cols=134  Identities=16%  Similarity=0.218  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchhc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..||+.||+|||++     |||..||||+.+  | ++||+|||+++......  ..+..+-|..|.|   |    |++.+
T Consensus       224 mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~--G-~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRp---P----ELLLG  293 (560)
T KOG0600|consen  224 MKQLLEGLEYCHSRGVLHRDIKGSNILIDNN--G-VLKIADFGLARFYTPSGSAPYTSRVVTLWYRP---P----ELLLG  293 (560)
T ss_pred             HHHHHHHHHHHhhcCeeeccccccceEEcCC--C-CEEeccccceeeccCCCCcccccceEEeeccC---h----HHhcC
Confidence            56999999999998     899999999995  4 49999999999775543  4566778999999   9    98887


Q ss_pred             -cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CC------CccCCC-------------------CCC
Q psy3184          84 -VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI------DKIPFP-------------------KHV  122 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~------~~~~~p-------------------~~~  122 (185)
                       ..|+.              +.|++.|. |.+..+.+++|..- |.      ....+|                   ..+
T Consensus       294 ~t~Yg~aVDlWS~GCIl~El~~gkPI~~-G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~  372 (560)
T KOG0600|consen  294 ATSYGTAVDLWSVGCILAELFLGKPILQ-GRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRETFKDF  372 (560)
T ss_pred             CcccccceeehhhhHHHHHHHcCCCCcC-CccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcccchHHHHhccC
Confidence             35665              88999999 99888887777621 10      011222                   247


Q ss_pred             CHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       123 s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                      +..+.+|+.+||..||.+|.     +|.+.|.|.||..
T Consensus       373 ~~~~l~Ll~~lL~ldP~kR~-----tA~~aL~seyF~t  405 (560)
T KOG0600|consen  373 PASALDLLEKLLSLDPDKRG-----TASSALQSEYFTT  405 (560)
T ss_pred             CHHHHHHHHHHhccCccccc-----cHHHHhcCccccc
Confidence            89999999999999999999     6699999999943

>KOG1027|consensus

Probab=99.66  E-value=3.5e-16  Score=136.07  Aligned_cols=132  Identities=20%  Similarity=0.237  Sum_probs=95.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEcc---CCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITE---GEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQT   77 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~---~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~   77 (185)
                      .-.|++.||.+||+.     ||||.||||..   +.+ ..++|+|||+++.+..+.    ......||-+|+|   |   
T Consensus       611 ~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~-~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~A---P---  683 (903)
T KOG1027|consen  611 VLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGT-LRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQA---P---  683 (903)
T ss_pred             HHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcc-eeEEecccccccccCCCcchhhcccCCCCcccccC---H---
Confidence            356889999999997     88999999987   222 348999999999887763    3445789999999   9   


Q ss_pred             ccchhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCc-cCCCCCCCHHHHHHHHHHhhcCcCcc
Q psy3184          78 YNMIINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDK-IPFPKHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        78 ~E~~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~-~~~p~~~s~~~~~li~~~l~~dp~~R  141 (185)
                       |++....-..              ++ |..||.   +.-+.-.+|. .+... ...-..-..++++||.+||..+|..|
T Consensus       684 -E~L~~~~~~~avDiFslGCvfyYvltgG~HpFG---d~~~R~~NIl-~~~~~L~~L~~~~d~eA~dLI~~ml~~dP~~R  758 (903)
T KOG1027|consen  684 -EQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFG---DSLERQANIL-TGNYTLVHLEPLPDCEAKDLISRMLNPDPQLR  758 (903)
T ss_pred             -HHHhccccCcccchhhcCceEEEEecCCccCCC---chHHhhhhhh-cCccceeeeccCchHHHHHHHHHhcCCCcccC
Confidence             6665432111              44 599996   3344445566 33211 11112222399999999999999999


Q ss_pred             cCCCCCChhhhhcCCCC
Q psy3184         142 LGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       142 ~~~~~~~~~~ll~hp~f  158 (185)
                      |     +|.++|.||+|
T Consensus       759 P-----sa~~VL~HPlF  770 (903)
T KOG1027|consen  759 P-----SATDVLNHPLF  770 (903)
T ss_pred             C-----CHHHHhCCCcc
Confidence            9     66999999999

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.66  E-value=5e-16  Score=124.43  Aligned_cols=137  Identities=16%  Similarity=0.265  Sum_probs=103.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.||.|||++     |++|+||+++.+.   .++|+|||++..+... ......+|+..|+|   |    |++..
T Consensus       122 ~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~---~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  191 (297)
T cd06659         122 VCESVLQALCYLHSQGVIHRDIKSDSILLTLDG---RVKLSDFGFCAQISKDVPKRKSLVGTPYWMA---P----EVISR  191 (297)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHeEEccCC---cEEEeechhHhhcccccccccceecCccccC---H----HHHcc
Confidence            367999999999988     7899999998753   3999999988755332 22345679999999   9    77765


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. ..+..+....+..........+..++.++.++|.+||..+|.+||     ++
T Consensus       192 ~~~~~~~Dv~slG~il~el~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rp-----s~  265 (297)
T cd06659         192 TPYGTEVDIWSLGIMVIEMVDGEPPYF-SDSPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERA-----TA  265 (297)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCcccCc-----CH
Confidence            44443              88999998 666555555554111122333456889999999999999999999     66


Q ss_pred             hhhhcCCCCCCCC
Q psy3184         150 VDIKKHKWFQGFD  162 (185)
Q Consensus       150 ~~ll~hp~f~~~~  162 (185)
                      ++++.||||....
T Consensus       266 ~~ll~~~~~~~~~  278 (297)
T cd06659         266 QELLDHPFLLQTG  278 (297)
T ss_pred             HHHhhChhhccCC
Confidence            9999999997553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.66  E-value=5.8e-16  Score=122.54  Aligned_cols=135  Identities=16%  Similarity=0.202  Sum_probs=95.1

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||.|||++     |++|+||+++.+.   +++|+|||.++..... .......+++.|+|   |    |++.
T Consensus       103 ~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  172 (284)
T cd07839         103 SFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNG---ELKLADFGLARAFGIPVRCYSAEVVTLWYRP---P----DVLF  172 (284)
T ss_pred             HHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCC---cEEECccchhhccCCCCCCcCCCccccCCcC---h----HHHh
Confidence            3478999999999998     7899999998853   4999999998765433 22334567899999   9    8765


Q ss_pred             ccC-cce--------------eccCCCCCCCCChHHHHHHHHhc-CC-------------Ccc---CC---------CCC
Q psy3184          83 NVG-IDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI-------------DKI---PF---------PKH  121 (185)
Q Consensus        83 ~~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~-------------~~~---~~---------p~~  121 (185)
                      +.. ++.              ++|..||..+.+....+..+... +.             ...   .+         ...
T Consensus       173 ~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (284)
T cd07839         173 GAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPK  252 (284)
T ss_pred             CCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhccc
Confidence            432 332              66777754255554444433210 00             000   01         124


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      ++.++++||.+||..||.+||     ++++++.||||
T Consensus       253 ~~~~~~~li~~~l~~~P~~R~-----t~~~il~h~~f  284 (284)
T cd07839         253 LNSTGRDLLQNLLVCNPVQRI-----SAEEALQHPYF  284 (284)
T ss_pred             CCHHHHHHHHHHhcCChhhcC-----CHHHHhcCCCC
Confidence            789999999999999999999     66999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.66  E-value=7e-16  Score=121.39  Aligned_cols=130  Identities=20%  Similarity=0.416  Sum_probs=103.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---------------------ccccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---------------------KILRLLS   63 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---------------------~~~~~~~   63 (185)
                      .+.|++.||.|||+.     +++|+||++..+.   +++++|||.+......                     .......
T Consensus       107 i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~---~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (280)
T cd05581         107 YAAEILLALEYLHSKGIIHRDLKPENILLDKDM---HIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFV  183 (280)
T ss_pred             HHHHHHHHHHHHHHCCeeecCCCHHHeEECCCC---CEEecCCccccccCCccccccCCCCCcccccccccccccccccc
Confidence            478999999999998     7899999998753   4899999988755332                     1223456


Q ss_pred             CCccccccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHH
Q psy3184          64 GRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSL  129 (185)
Q Consensus        64 gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~l  129 (185)
                      |+..|++   |    |+.....++.              ++|..||. ..+....+..+.   .....+|..++..+.+|
T Consensus       184 ~~~~~~~---P----e~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l  252 (280)
T cd05581         184 GTAEYVS---P----ELLNEKPAGKSSDLWALGCIIYQMLTGKPPFR-GSNEYLTFQKIL---KLEYSFPPNFPPDAKDL  252 (280)
T ss_pred             CCccccC---H----HHhCCCCCChhhhHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHH---hcCCCCCCccCHHHHHH
Confidence            7899999   9    7665443332              88999998 776666666666   23667888899999999


Q ss_pred             HHHHhhcCcCcccCCCCCCh----hhhhcCCCC
Q psy3184         130 IKALCKESPAERLGYQRGGI----VDIKKHKWF  158 (185)
Q Consensus       130 i~~~l~~dp~~R~~~~~~~~----~~ll~hp~f  158 (185)
                      |.+||..+|.+||     ++    +++++||||
T Consensus       253 i~~~l~~~p~~R~-----~~~~~~~~ll~~~~~  280 (280)
T cd05581         253 IEKLLVLDPQDRL-----GVNEGYDELKAHPFF  280 (280)
T ss_pred             HHHHhcCCHhhCC-----CcccCHHHHhcCCCC
Confidence            9999999999999     66    999999998

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG0603|consensus

Probab=99.66  E-value=1e-16  Score=135.99  Aligned_cols=156  Identities=25%  Similarity=0.445  Sum_probs=130.8

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +++.++++.|++++|+.     ++|++||+++.+  |+ +++.|||..+........   |||..|||   |    |++.
T Consensus       100 ~~~~aelaLald~lh~l~iiyrd~k~enilld~~--Gh-i~~tdfglske~v~~~~~---cgt~eymA---p----EI~~  166 (612)
T KOG0603|consen  100 AFYLAELALALDHLHKLGIAYRDYKLENVLLLLE--GH-IKLTDFGLSKEAVKEKIA---CGTYEYRA---P----EIIN  166 (612)
T ss_pred             HHHHHHHHHHHhhcchhHHHHhcccccceeeccc--Cc-cccCCchhhhHhHhhhhc---ccchhhhh---h----Hhhh
Confidence            45578899999999997     889999999986  44 999999999866444333   99999999   9    8777


Q ss_pred             ccC-----cce-------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          83 NVG-----IDN-------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        83 ~~~-----~~~-------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      +..     ++.       ++|..||. +    ++...|.   ...+.+|..++..+++++..++.++|.+|.+..-+.+.
T Consensus       167 gh~~a~D~ws~gvl~felltg~~pf~-~----~~~~~Il---~~~~~~p~~l~~~a~~~~~~l~~r~p~nrLg~~~~~~~  238 (612)
T KOG0603|consen  167 GHLSAADWWSFGVLAFELLTGTLPFG-G----DTMKRIL---KAELEMPRELSAEARSLFRQLFKRNPENRLGAGPDGVD  238 (612)
T ss_pred             ccCCcccchhhhhhHHHHhhCCCCCc-h----HHHHHHh---hhccCCchhhhHHHHHHHHHHHhhCHHHHhccCcchhH
Confidence            211     111       99999998 4    6666777   35788999999999999999999999999988667889


Q ss_pred             hhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         151 DIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       151 ~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      ++++|+||+.++|..+..++..|||.|....+.|
T Consensus       239 eik~h~f~~~i~~~~l~~r~~~~~fkp~~~~e~~  272 (612)
T KOG0603|consen  239 EIKQHEFFQSIDWNELEARSRPPPFKPGSITERD  272 (612)
T ss_pred             HHhccchheeeeHhhHhhcCCCCCCCCcccchhh
Confidence            9999999999999999999999999998876544

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.65  E-value=6.4e-16  Score=126.20  Aligned_cols=142  Identities=16%  Similarity=0.206  Sum_probs=102.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      .+.|++.||.|||+.     +++|.||+++.+.   .++|+|||.++....  ......|++.|+|   |    |++.. 
T Consensus       122 ~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~---~~kL~dfg~~~~~~~--~~~~~~~~~~y~a---P----E~~~~~  189 (342)
T cd07879         122 LVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDC---ELKILDFGLARHADA--EMTGYVVTRWYRA---P----EVILNW  189 (342)
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCHHHEEECCCC---CEEEeeCCCCcCCCC--CCCCceeeecccC---h----hhhcCc
Confidence            468999999999997     7899999998853   399999999875533  2234577899999   9    77654 


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCC--------------------CccCCC--------CC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI--------------------DKIPFP--------KH  121 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~--------------------~~~~~p--------~~  121 (185)
                      ..++.              ++|+.||. +.+....+..+.....                    ....++        ..
T Consensus       190 ~~~~~~~Dv~slGvil~el~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (342)
T cd07879         190 MHYNQTVDIWSVGCIMAEMLTGKTLFK-GKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPK  268 (342)
T ss_pred             cccCchHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcC
Confidence            22332              88999998 7765554444331000                    000111        24


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcc
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQ  169 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~  169 (185)
                      ++.++.+||.+||..||.+||     ++++++.||||..+........
T Consensus       269 ~~~~~~~li~~~l~~dP~~R~-----~~~e~l~h~~f~~~~~~~~~~~  311 (342)
T cd07879         269 ASPQAVDLLEKMLELDVDKRL-----TATEALEHPYFDSFRDADEETE  311 (342)
T ss_pred             CCHHHHHHHHHHcCCChhhCc-----CHHHHhcCcchhhcccccccCC
Confidence            678899999999999999999     5699999999998876544443

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.65  E-value=4e-16  Score=125.42  Aligned_cols=136  Identities=13%  Similarity=0.182  Sum_probs=91.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCC-CCCeeEEcccCceeEeecCc----ccccccCCccccccCCCccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGE-AGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~-~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .+.||+.||+|||+.     ||||+||++..+. ....++|+|||+++......    ......||+.|+|   |    |
T Consensus       113 i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~a---P----E  185 (317)
T cd07867         113 LLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRA---P----E  185 (317)
T ss_pred             HHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccC---c----H
Confidence            367999999999997     8999999995421 12249999999998664321    2334678999999   9    8


Q ss_pred             chhcc-Ccce--------------eccCCCCCCCCChH---------HHHHHHHhc-CC----------CccC-------
Q psy3184          80 MIINV-GIDN--------------IFSRPPFCVMNDPM---------QTYNMIINV-GI----------DKIP-------  117 (185)
Q Consensus        80 ~~~~~-~~~~--------------l~g~~Pf~~~~~~~---------~~~~~i~~~-~~----------~~~~-------  117 (185)
                      ++.+. .++.              ++|.+||. ..+..         .....+... +.          ....       
T Consensus       186 ~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (317)
T cd07867         186 LLLGARHYTKAIDIWAIGCIFAELLTSEPIFH-CRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKD  264 (317)
T ss_pred             HhcCCCccCcHHHHHhHHHHHHHHHhCCCCcc-cccccccccccccHHHHHHHHHhcCCCChhhhhhhhhcccchhhhhh
Confidence            76543 2333              88999996 43210         001111000 00          0000       


Q ss_pred             -----------------CCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         118 -----------------FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       118 -----------------~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                                       .....+..+.+||.+||..||.+||     ++.+++.||||
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dP~~R~-----t~~e~l~hp~f  317 (317)
T cd07867         265 FRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRI-----TSEQALQDPYF  317 (317)
T ss_pred             hcccccCCchhhhhhhcccCCCChHHHHHHHHHhccCccccc-----CHHHHhcCCCC
Confidence                             0112467789999999999999999     66999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.65  E-value=9.6e-16  Score=120.46  Aligned_cols=133  Identities=17%  Similarity=0.228  Sum_probs=97.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||++     +++|.||+++.+. + .++|+|||.+...... .......|++.|+|   |    |++..
T Consensus       113 ~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~-~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~a---P----E~~~~  183 (268)
T cd06624         113 YTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYS-G-VVKISDFGTSKRLAGINPCTETFTGTLQYMA---P----EVIDK  183 (268)
T ss_pred             HHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCC-C-eEEEecchhheecccCCCccccCCCCccccC---h----hhhcc
Confidence            467999999999998     7899999997642 2 4899999998765432 22334568999999   9    76543


Q ss_pred             cC--cce--------------eccCCCCCCCCC-hHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          84 VG--IDN--------------IFSRPPFCVMND-PMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        84 ~~--~~~--------------l~g~~Pf~~~~~-~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ..  ++.              ++|..||. ..+ .......+. .......+|..+++++++|+.+||..+|.+||    
T Consensus       184 ~~~~~~~~~Dv~slGvvl~~l~~g~~p~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----  257 (268)
T cd06624         184 GPRGYGAPADIWSLGCTIVEMATGKPPFI-ELGEPQAAMFKVG-MFKIHPEIPESLSAEAKNFILRCFEPDPDKRA----  257 (268)
T ss_pred             ccccCCchhhhHHHHHHHHHHHhCCCCCc-cccChhhhHhhhh-hhccCCCCCcccCHHHHHHHHHHcCCCchhCC----
Confidence            21  222              78999997 433 222222221 11234567788999999999999999999999    


Q ss_pred             CChhhhhcCCCC
Q psy3184         147 GGIVDIKKHKWF  158 (185)
Q Consensus       147 ~~~~~ll~hp~f  158 (185)
                       ++.+++.||||
T Consensus       258 -t~~~ll~~~~~  268 (268)
T cd06624         258 -SAHDLLQDPFL  268 (268)
T ss_pred             -CHHHHHhCCCC
Confidence             56999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.65  E-value=8.9e-16  Score=119.47  Aligned_cols=131  Identities=23%  Similarity=0.284  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      +.|++.||.|||+.     +++|.||+++.+.  ..++++|||.+....... ......|++.|+|   |    |+....
T Consensus       107 ~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~--~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~a---p----e~~~~~  177 (257)
T cd08225         107 FVQISLGLKHIHDRKILHRDIKSQNIFLSKNG--MVAKLGDFGIARQLNDSMELAYTCVGTPYYLS---P----EICQNR  177 (257)
T ss_pred             HHHHHHHHHHHHHCCcccccCCHHHEEEcCCC--CeEEecccccchhccCCcccccccCCCccccC---H----HHHcCC
Confidence            56899999999997     7899999998753  247999999887664432 2334568999999   9    766544


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|..||. +.+..+....+. .+ .....+..++.+++++|.+|+..+|.+||     +++
T Consensus       178 ~~~~~~Dv~slG~il~~l~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp-----t~~  249 (257)
T cd08225         178 PYNNKTDIWSLGCVLYELCTLKHPFE-GNNLHQLVLKIC-QG-YFAPISPNFSRDLRSLISQLFKVSPRDRP-----SIT  249 (257)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHh-cc-cCCCCCCCCCHHHHHHHHHHhccChhhCc-----CHH
Confidence            3332              78999998 777766666655 22 22334456889999999999999999999     569


Q ss_pred             hhhcCCCC
Q psy3184         151 DIKKHKWF  158 (185)
Q Consensus       151 ~ll~hp~f  158 (185)
                      ++++||||
T Consensus       250 ~ll~~~~~  257 (257)
T cd08225         250 SILKRPFL  257 (257)
T ss_pred             HHhhCCCC
Confidence            99999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.65  E-value=6.9e-16  Score=120.41  Aligned_cols=135  Identities=15%  Similarity=0.231  Sum_probs=104.9

Q ss_pred             cHHHHHHHHHHHhh-c-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc-ccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQ-A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL-RLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~-~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~-~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.|++.|+.|||+ .     +++|+||+++.+.   .++|+|||.+......... ....++..|+|   |    |.+.
T Consensus       104 ~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~---~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~---p----E~~~  173 (264)
T cd06623         104 IARQILKGLDYLHTKRHIIHRDIKPSNLLINSKG---EVKIADFGISKVLENTLDQCNTFVGTVTYMS---P----ERIQ  173 (264)
T ss_pred             HHHHHHHHHHHHhccCCCccCCCCHHHEEECCCC---CEEEccCccceecccCCCcccceeecccccC---H----hhhC
Confidence            36799999999999 7     7899999998853   4899999998876543322 35678899999   9    7766


Q ss_pred             ccCcce--------------eccCCCCCCCC---ChHHHHHHHHhcCCCccCCCCC-CCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMN---DPMQTYNMIINVGIDKIPFPKH-VTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~---~~~~~~~~i~~~~~~~~~~p~~-~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ...++.              ++|..||. ..   +..+....+..  ......+.. ++..+.++|.+||..+|.+||  
T Consensus       174 ~~~~~~~~Dv~slG~il~~l~tg~~p~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~--  248 (264)
T cd06623         174 GESYSYAADIWSLGLTLLECALGKFPFL-PPGQPSFFELMQAICD--GPPPSLPAEEFSPEFRDFISACLQKDPKKRP--  248 (264)
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCc-cccccCHHHHHHHHhc--CCCCCCCcccCCHHHHHHHHHHccCChhhCC--
Confidence            554443              88999998 44   45566666552  234555556 899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~  162 (185)
                         ++.+++.||||+.++
T Consensus       249 ---~~~~ll~~~~~~~~~  263 (264)
T cd06623         249 ---SAAELLQHPFIKKAD  263 (264)
T ss_pred             ---CHHHHHhCHHHHhcc
Confidence               569999999998653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.65  E-value=1.3e-15  Score=117.93  Aligned_cols=132  Identities=17%  Similarity=0.281  Sum_probs=102.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.|++.|+.|||+.     +++|+||+++.+.   .++++|||.+........   .....++..|++   |    |.+
T Consensus       106 ~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~---~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~---p----E~~  175 (260)
T cd06606         106 YTRQILEGLAYLHSNGIVHRDIKGANILVDSDG---VVKLADFGCAKRLGDIETGEGTGSVRGTPYWMA---P----EVI  175 (260)
T ss_pred             HHHHHHHHHHHHHHCCccccCCCHHHEEEcCCC---CEEEcccccEEecccccccccccCCCCCccccC---H----hhh
Confidence            378999999999998     7899999999853   489999999987766543   445678999999   9    776


Q ss_pred             hccCcce--------------eccCCCCCCCCC-hHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMND-PMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~-~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++|..||. ..+ .......+. .+.....+|..++.++.+||.+|+..||.+||    
T Consensus       176 ~~~~~~~~~Dv~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp----  249 (260)
T cd06606         176 RGEEYGRAADIWSLGCTVIEMATGKPPWS-ELGNPMAALYKIG-SSGEPPEIPEHLSEEAKDFLRKCLRRDPKKRP----  249 (260)
T ss_pred             cCCCCCchhhHHHHHHHHHHHHhCCCCCC-CCCchHHHHHhcc-ccCCCcCCCcccCHHHHHHHHHhCcCChhhCC----
Confidence            5443322              88999998 443 444444443 22245667788899999999999999999999    


Q ss_pred             CChhhhhcCCCC
Q psy3184         147 GGIVDIKKHKWF  158 (185)
Q Consensus       147 ~~~~~ll~hp~f  158 (185)
                       ++.+++.||||
T Consensus       250 -~~~~ll~~~~~  260 (260)
T cd06606         250 -TADELLQHPFL  260 (260)
T ss_pred             -CHHHHhhCCCC
Confidence             55999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.65  E-value=1e-15  Score=121.07  Aligned_cols=133  Identities=14%  Similarity=0.146  Sum_probs=94.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||+.     |++|+||+++.+.   .++|+|||.+....... ......+++.|+|   |    |++.+
T Consensus       106 ~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  175 (285)
T cd07861         106 YLYQILQGILFCHSRRVLHRDLKPQNLLIDNKG---VIKLADFGLARAFGIPVRVYTHEVVTLWYRA---P----EVLLG  175 (285)
T ss_pred             HHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCC---cEEECcccceeecCCCcccccCCcccccccC---h----HHhcC
Confidence            378999999999998     7899999998753   49999999987654332 2223467889999   9    76654


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCC--------------------c------cCCCCCC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID--------------------K------IPFPKHV  122 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~--------------------~------~~~p~~~  122 (185)
                      . .++.              ++|.+||. +.+.......+......                    .      ......+
T Consensus       176 ~~~~~~~~Dv~slG~il~~l~tg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (285)
T cd07861         176 SPRYSTPVDIWSIGTIFAEMATKKPLFH-GDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNL  254 (285)
T ss_pred             CCCcCcHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCCC
Confidence            2 2332              88999998 55433222211100000                    0      0011347


Q ss_pred             CHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       123 s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      +.++.++|++||..||.+||     ++++++.||||
T Consensus       255 ~~~~~~li~~~l~~dP~~Rp-----t~~~ll~~~~~  285 (285)
T cd07861         255 DEDGLDLLEKMLIYDPAKRI-----SAKKALNHPYF  285 (285)
T ss_pred             CHHHHHHHHHHhcCChhhCC-----CHHHHhcCCCC
Confidence            89999999999999999999     66999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.65  E-value=2.6e-16  Score=122.61  Aligned_cols=133  Identities=17%  Similarity=0.324  Sum_probs=96.7

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe-ecCcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI-KDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~-~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||.+||+.     ||||+||+++.+.   +++|+|||.+... ..........+++.|+|   |    |++.
T Consensus       102 ~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~---~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  171 (260)
T PF00069_consen  102 KIAYQILEALAYLHSKGIVHRDIKPENILLDENG---EVKLIDFGSSVKLSENNENFNPFVGTPEYMA---P----EVLQ  171 (260)
T ss_dssp             HHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTS---EEEESSGTTTEESTSTTSEBSSSSSSGGGSC---H----HHHT
T ss_pred             cccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccc---c----cccc
Confidence            3478999999999998     8999999999643   4899999998764 33445556789999999   9    8776


Q ss_pred             -ccCcce--------------eccCCCCCCCCCh---HHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCccc
Q psy3184          83 -NVGIDN--------------IFSRPPFCVMNDP---MQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        83 -~~~~~~--------------l~g~~Pf~~~~~~---~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                       ...++.              ++|..||. ..+.   ........ .........  ...+.++.++|.+||..||.+||
T Consensus       172 ~~~~~~~~~Di~slG~il~~l~~~~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~  249 (260)
T PF00069_consen  172 QGKKYTRKSDIWSLGIILYELLTGKLPFE-ESNSDDQLEIIEKIL-KRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRP  249 (260)
T ss_dssp             TTSSBSTHHHHHHHHHHHHHHHHSSSSST-TSSHHHHHHHHHHHH-HTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGST
T ss_pred             ccccccccccccccccccccccccccccc-cccchhhhhhhhhcc-cccccccccccchhHHHHHHHHHHHccCChhHCc
Confidence             333332              89999998 5532   23333322 000011111  12348999999999999999999


Q ss_pred             CCCCCChhhhhcCCCC
Q psy3184         143 GYQRGGIVDIKKHKWF  158 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f  158 (185)
                           ++.++++||||
T Consensus       250 -----~~~~l~~~~~~  260 (260)
T PF00069_consen  250 -----SAEELLKHPWF  260 (260)
T ss_dssp             -----THHHHHTSGGG
T ss_pred             -----CHHHHhcCCCC
Confidence                 66999999997

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.65  E-value=1.4e-15  Score=121.11  Aligned_cols=133  Identities=20%  Similarity=0.272  Sum_probs=97.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||+.     ||+|+||+++.+  + .++|+|||.+...... .......+++.|+|   |    |.+.+
T Consensus       111 i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~--~-~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~a---P----E~~~~  180 (293)
T cd07843         111 LMLQLLSGVAHLHDNWILHRDLKTSNLLLNNR--G-ILKICDFGLAREYGSPLKPYTQLVVTLWYRA---P----ELLLG  180 (293)
T ss_pred             HHHHHHHHHHHHHHCCeeeccCCHHHEEECCC--C-cEEEeecCceeeccCCccccccccccccccC---c----hhhcC
Confidence            468999999999998     789999999885  3 4999999998876553 23334567889999   9    76654


Q ss_pred             cC-cce--------------eccCCCCCCCCChHHHHHHHHhcCC----------------------------CccCCCC
Q psy3184          84 VG-IDN--------------IFSRPPFCVMNDPMQTYNMIINVGI----------------------------DKIPFPK  120 (185)
Q Consensus        84 ~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~----------------------------~~~~~p~  120 (185)
                      .. ++.              ++|.+||. +.+......++...-.                            -...+|.
T Consensus       181 ~~~~~~~~Di~slG~~l~~l~~g~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (293)
T cd07843         181 AKEYSTAIDMWSVGCIFAELLTKKPLFP-GKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPA  259 (293)
T ss_pred             CccccchhhHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhccccc
Confidence            22 222              88999998 6665555444331000                            0012333


Q ss_pred             C-CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         121 H-VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       121 ~-~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      . ++..+.++|++||..||++||     ++.+++.||||
T Consensus       260 ~~~~~~~~~li~~~l~~~p~~R~-----t~~ell~~~~f  293 (293)
T cd07843         260 LSLSDNGFDLLNRLLTYDPAKRI-----SAEDALKHPYF  293 (293)
T ss_pred             cCCChHHHHHHHHHhccCccccC-----CHHHHhcCCCC
Confidence            3 689999999999999999999     66999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.65  E-value=7e-16  Score=121.97  Aligned_cols=135  Identities=19%  Similarity=0.264  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      +.|++.|++|||+.     +++|+||+++.+.   .++++|||.+....... ......++..|+|   |    |++...
T Consensus       107 ~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a---p----E~~~~~  176 (277)
T cd06640         107 LKEILKGLDYLHSEKKIHRDIKAANVLLSEQG---DVKLADFGVAGQLTDTQIKRNTFVGTPFWMA---P----EVIQQS  176 (277)
T ss_pred             HHHHHHHHHHHHhCCccCcCCChhhEEEcCCC---CEEEcccccceeccCCccccccccCcccccC---H----hHhccC
Confidence            67999999999998     7899999998753   39999999987664432 2334578889999   9    776654


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|..||. ..+.......+..  .....++..++.++.+++.+||..+|.+||     +++
T Consensus       177 ~~~~~~Dv~slG~il~el~tg~~p~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----~~~  248 (277)
T cd06640         177 AYDSKADIWSLGITAIELAKGEPPNS-DMHPMRVLFLIPK--NNPPTLTGEFSKPFKEFIDACLNKDPSFRP-----TAK  248 (277)
T ss_pred             CCccHHHHHHHHHHHHHHHHCCCCCC-CcChHhHhhhhhc--CCCCCCchhhhHHHHHHHHHHcccCcccCc-----CHH
Confidence            4443              88999998 6666665555441  235556667899999999999999999999     559


Q ss_pred             hhhcCCCCCCCCh
Q psy3184         151 DIKKHKWFQGFDW  163 (185)
Q Consensus       151 ~ll~hp~f~~~~~  163 (185)
                      +++.|+||.....
T Consensus       249 ~il~~~~~~~~~~  261 (277)
T cd06640         249 ELLKHKFIVKNAK  261 (277)
T ss_pred             HHHhChHhhhcch
Confidence            9999999976543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.65  E-value=1.2e-15  Score=120.52  Aligned_cols=133  Identities=17%  Similarity=0.262  Sum_probs=100.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.||.|||+.     +++|+||+++.+  + .++++|||.+.............++..|+|   |    |++.+.
T Consensus       112 ~~~~i~~al~~LH~~~i~h~~l~~~nili~~~--~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~---P----E~~~~~  181 (287)
T cd07838         112 LMRQLLRGVDFLHSHRIVHRDLKPQNILVTSD--G-QVKIADFGLARIYSFEMALTSVVVTLWYRA---P----EVLLQS  181 (287)
T ss_pred             HHHHHHHHHHHHHHCCeeeccCChhhEEEccC--C-CEEEeccCcceeccCCcccccccccccccC---h----HHhccC
Confidence            468999999999998     789999999986  3 499999999987765544445568899999   9    776654


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCC--CccC-----------CC-----------CCCCHHH
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI--DKIP-----------FP-----------KHVTRTA  126 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~--~~~~-----------~p-----------~~~s~~~  126 (185)
                      .++.              ++|.+||. +.+..+.+.++...-.  ....           ++           ..++.++
T Consensus       182 ~~~~~~Di~s~G~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (287)
T cd07838         182 SYATPVDMWSVGCIFAELFRRRPLFR-GTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEG  260 (287)
T ss_pred             CCCCcchhhhHHHHHHHHHhCCCccc-CCChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhHHH
Confidence            4332              78899998 7776666655541000  0000           11           1356888


Q ss_pred             HHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         127 QSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       127 ~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      .++|.+||..||.+||     ++++++.||||
T Consensus       261 ~~li~~~l~~dp~~Rp-----~~~~il~~~~~  287 (287)
T cd07838         261 LDLLKKMLTFNPHKRI-----SAFEALQHPYF  287 (287)
T ss_pred             HHHHHHHhccCCccCC-----CHHHHhcCcCC
Confidence            9999999999999999     55999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.65  E-value=1.3e-15  Score=119.38  Aligned_cols=133  Identities=17%  Similarity=0.247  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-----cccccccCCccccccCCCcccccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-----KILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-----~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ..||+.||.|||++     +|+|.||+++.+  +..++|+|||.+......     .......|+..|+|   |    |+
T Consensus       109 ~~ql~~al~~LH~~~i~H~~i~~~nil~~~~--~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~---P----E~  179 (268)
T cd06630         109 TEQLLRGLSYLHENQIIHRDVKGANLLIDST--GQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMA---P----EV  179 (268)
T ss_pred             HHHHHHHHHHHHhCCeecCCCCHHHEEEcCC--CCEEEEcccccccccccccccCCccccccccccceeC---H----hH
Confidence            68999999999998     789999999764  334899999998765432     11224578899999   9    87


Q ss_pred             hhccCcce--------------eccCCCCCCCCChH---HHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPM---QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~---~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                      +.+..++.              ++|..||. ..+..   .....+. .......+|..++.++.+++.+||..+|.+|| 
T Consensus       180 ~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~-  256 (268)
T cd06630         180 LRGEQYGRSCDVWSVGCVIIEMATAKPPWN-AEKHSNHLALIFKIA-SATTAPSIPEHLSPGLRDVTLRCLELQPEDRP-  256 (268)
T ss_pred             hccCCCCcccchHHHHHHHHHHHhCCCCCC-CCCCcchHHHHHHHh-ccCCCCCCchhhCHHHHHHHHHHcCCCcccCc-
Confidence            76555543              88999997 44332   2222222 11235667778999999999999999999999 


Q ss_pred             CCCCChhhhhcCCCCC
Q psy3184         144 YQRGGIVDIKKHKWFQ  159 (185)
Q Consensus       144 ~~~~~~~~ll~hp~f~  159 (185)
                          ++.++++||||+
T Consensus       257 ----~~~~ll~~~~~~  268 (268)
T cd06630         257 ----PSRELLKHPVFR  268 (268)
T ss_pred             ----CHHHHhcCcccC
Confidence                559999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.65  E-value=2e-15  Score=117.61  Aligned_cols=131  Identities=17%  Similarity=0.265  Sum_probs=103.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.|+.|||+.     |++|+||+++.+.   .++++|||.+....... ......|++.|+|   |    |++.+
T Consensus       106 ~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~---~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~a---p----e~~~~  175 (256)
T cd08221         106 YLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAG---LIKLGDFGISKILGSEYSMAETVVGTPYYMS---P----ELCQG  175 (256)
T ss_pred             HHHHHHHHHHHHHhCCccccCCChHhEEEeCCC---CEEECcCcceEEcccccccccccCCCccccC---H----hhcCC
Confidence            367899999999987     7899999998853   39999999998664433 3445678999999   9    76654


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. ..+..+....+. .+ .....+..++.++.+++.+||..+|.+||     ++
T Consensus       176 ~~~~~~~Dv~slG~i~~~l~~g~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~R~-----s~  247 (256)
T cd08221         176 VKYNFKSDIWALGCVLYELLTLKRTFD-ATNPLNLVVKIV-QG-NYTPVVSVYSSELISLVHSLLQQDPEKRP-----TA  247 (256)
T ss_pred             CCCCCcchhHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHH-cC-CCCCCccccCHHHHHHHHHHcccCcccCC-----CH
Confidence            43332              78999998 777777777776 33 22334466899999999999999999999     66


Q ss_pred             hhhhcCCCC
Q psy3184         150 VDIKKHKWF  158 (185)
Q Consensus       150 ~~ll~hp~f  158 (185)
                      +++++|+|+
T Consensus       248 ~~ll~~~~l  256 (256)
T cd08221         248 DEVLDQPLL  256 (256)
T ss_pred             HHHhhCcCC
Confidence            999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>PHA02988 hypothetical protein; Provisional

Probab=99.64  E-value=1e-15  Score=121.99  Aligned_cols=126  Identities=12%  Similarity=0.138  Sum_probs=99.2

Q ss_pred             cHHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.|+.|||+.      ||||+||+++.+.   .++++|||+++.....  .....|++.|+|   |    |++..
T Consensus       127 i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~---~~kl~dfg~~~~~~~~--~~~~~~~~~y~a---P----E~~~~  194 (283)
T PHA02988        127 MAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENY---KLKIICHGLEKILSSP--PFKNVNFMVYFS---Y----KMLND  194 (283)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCC---cEEEcccchHhhhccc--cccccCcccccC---H----HHhhh
Confidence            367999999999973      7999999999863   3899999998755332  234578999999   9    77654


Q ss_pred             --cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          84 --VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        84 --~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                        ..|+.              ++|..||. +.+..+++..+. .+...+.+|..+++++++|+.+||..||.+||     
T Consensus       195 ~~~~~~~k~Di~SlGvil~el~~g~~Pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rp-----  267 (283)
T PHA02988        195 IFSEYTIKDDIYSLGVVLWEIFTGKIPFE-NLTTKEIYDLII-NKNNSLKLPLDCPLEIKCIVEACTSHDSIKRP-----  267 (283)
T ss_pred             ccccccchhhhhHHHHHHHHHHHCCCCCC-CCCHHHHHHHHH-hcCCCCCCCCcCcHHHHHHHHHHhcCCcccCc-----
Confidence              33443              88999999 888888888776 33345667767899999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++.+++.
T Consensus       268 s~~ell~  274 (283)
T PHA02988        268 NIKEILY  274 (283)
T ss_pred             CHHHHHH
Confidence            4477764

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.64  E-value=1.1e-15  Score=121.95  Aligned_cols=135  Identities=13%  Similarity=0.189  Sum_probs=98.6

Q ss_pred             ccHHHHHHHHHHHhh-c-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQ-A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~-~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.|+.|||+ .     |++|.||+++.+  + .++|+|||.+..+..........+++.|+|   |    |++.
T Consensus       118 ~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~--~-~~kL~dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  187 (296)
T cd06618         118 KMTVAIVKALHYLKEKHGVIHRDVKPSNILLDAS--G-NVKLCDFGISGRLVDSKAKTRSAGCAAYMA---P----ERID  187 (296)
T ss_pred             HHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCC--C-CEEECccccchhccCCCcccCCCCCccccC---H----hhcC
Confidence            358899999999996 3     799999999875  3 499999999876644333334467889999   9    7665


Q ss_pred             ccC----cce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCccc
Q psy3184          83 NVG----IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        83 ~~~----~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                      ...    ++.              ++|..||.......+....+.. . .....+  ..++.++.+|+.+||..||.+||
T Consensus       188 ~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp  265 (296)
T cd06618         188 PPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQ-E-EPPSLPPNEGFSPDFCSFVDLCLTKDHRKRP  265 (296)
T ss_pred             CCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhHHHHHHHHhc-C-CCCCCCCCCCCCHHHHHHHHHHccCChhhCC
Confidence            332    221              8899999722333444555542 1 122333  34789999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCC
Q psy3184         143 GYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~  160 (185)
                           ++++++.|+||..
T Consensus       266 -----~~~~il~~~~~~~  278 (296)
T cd06618         266 -----KYRELLQHPFIRR  278 (296)
T ss_pred             -----CHHHHhcChhhhc
Confidence                 5599999999974

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG0665|consensus

Probab=99.64  E-value=4.9e-16  Score=122.90  Aligned_cols=135  Identities=19%  Similarity=0.300  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhccC
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVG   85 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~~   85 (185)
                      -.|+++|++|+|+.     ||||.||++..+-   .+|+.|||+++.-+..-..+.++.|..|.|   |    |++.+.+
T Consensus       124 ~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~---~lKi~dfg~ar~e~~~~~mtpyVvtRyyra---p----evil~~~  193 (369)
T KOG0665|consen  124 LYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDC---TLKILDFGLARTEDTDFMMTPYVVTRYYRA---P----EVILGMG  193 (369)
T ss_pred             HHHHHHHHHHHHhcceeecccCcccceecchh---heeeccchhhcccCcccccCchhheeeccC---c----hheeccC
Confidence            47999999999998     7999999999863   389999999986655545567888999999   9    8887766


Q ss_pred             cce--------------eccCCCCCCCCChHHHHHHHHhcCCCcc-----------------------------CCCC--
Q psy3184          86 IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKI-----------------------------PFPK--  120 (185)
Q Consensus        86 ~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~-----------------------------~~p~--  120 (185)
                      |..              +.|..-|. |.+..+.+.++. .....+                             .+|.  
T Consensus       194 ~ke~vdiwSvGci~gEli~~~Vlf~-g~d~idQ~~ki~-~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~  271 (369)
T KOG0665|consen  194 YKENVDIWSVGCIMGELILGTVLFP-GKDHIDQWNKII-EQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSL  271 (369)
T ss_pred             CcccchhhhhhhHHHHHhhceEEec-CchHHHHHHHHH-HHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCccc
Confidence            664              77888888 888777766654 111111                             1221  


Q ss_pred             ---------CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         121 ---------HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       121 ---------~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                               .=+.-+++++.+||..||++|.     +++++|+||||+  -|-
T Consensus       272 f~~~~e~~~~~~~~ardll~~MLvi~pe~Ri-----sv~daL~HPY~~--vw~  317 (369)
T KOG0665|consen  272 FPVVLEGSKLDCSLARDLLSKMLVIDPEKRI-----SVDDALRHPYIK--VWY  317 (369)
T ss_pred             ccccccCCccchHHHHHHHHHhhccChhhcc-----cHHHHhcCCeee--eec
Confidence                     1246789999999999999999     889999999998  674

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.64  E-value=1.7e-15  Score=120.01  Aligned_cols=133  Identities=15%  Similarity=0.170  Sum_probs=97.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...|++.||.|||+.     |++|+||++..+.   .+++.|||.+....... ......|++.|+|   |    |++..
T Consensus       129 ~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  198 (286)
T cd06638         129 ILHEALMGLQHLHVNKTIHRDVKGNNILLTTEG---GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMA---P----EVIAC  198 (286)
T ss_pred             HHHHHHHHHHHHHhCCccccCCCHHhEEECCCC---CEEEccCCceeecccCCCccccccCCCcccC---h----hhhch
Confidence            467899999999987     7899999998853   38999999987664432 2334578999999   9    66532


Q ss_pred             -----cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          84 -----VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        84 -----~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                           ..|+.              ++|..||. ..+.......+..........|..++.++.+++.+||..||++||  
T Consensus       199 ~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp--  275 (286)
T cd06638         199 EQQLDSTYDARCDVWSLGITAIELGDGDPPLA-DLHPMRALFKIPRNPPPTLHQPELWSNEFNDFIRKCLTKDYEKRP--  275 (286)
T ss_pred             hhhccccccchhhhhhHHHHHHHHhcCCCCCC-CCchhHHHhhccccCCCcccCCCCcCHHHHHHHHHHccCCcccCC--
Confidence                 12222              78999998 555444433333111122334556789999999999999999999  


Q ss_pred             CCCChhhhhcCCCC
Q psy3184         145 QRGGIVDIKKHKWF  158 (185)
Q Consensus       145 ~~~~~~~ll~hp~f  158 (185)
                         ++++++.|+||
T Consensus       276 ---s~~ell~~~~~  286 (286)
T cd06638         276 ---TVSDLLQHVFI  286 (286)
T ss_pred             ---CHHHHhhcccC
Confidence               66999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.64  E-value=5.5e-16  Score=123.86  Aligned_cols=136  Identities=13%  Similarity=0.257  Sum_probs=100.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...|++.|+.|||++     |++|+||+++.+.   .++|+|||.+...... .......|++.|++   |    |++..
T Consensus       120 i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~---~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~~  189 (293)
T cd06647         120 VCRECLQALEFLHSNQVIHRDIKSDNILLGMDG---SVKLTDFGFCAQITPEQSKRSTMVGTPYWMA---P----EVVTR  189 (293)
T ss_pred             HHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCC---CEEEccCcceecccccccccccccCChhhcC---c----hhhcc
Confidence            367899999999998     7899999998753   3899999988755433 22334578899999   9    87655


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. ..+.......+...+......+..++..++++|.+||..+|.+||     ++
T Consensus       190 ~~~~~~~Dv~slG~ll~~ll~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-----~~  263 (293)
T cd06647         190 KAYGPKVDIWSLGIMAIEMVEGEPPYL-NENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRG-----SA  263 (293)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCC-CCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhCc-----CH
Confidence            44432              88999998 655444333332122122333456789999999999999999999     55


Q ss_pred             hhhhcCCCCCCC
Q psy3184         150 VDIKKHKWFQGF  161 (185)
Q Consensus       150 ~~ll~hp~f~~~  161 (185)
                      .+++.|+||+..
T Consensus       264 ~~il~h~~~~~~  275 (293)
T cd06647         264 KELLQHPFLKIA  275 (293)
T ss_pred             HHHhcCHHHhcC
Confidence            999999999754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.64  E-value=1.3e-15  Score=120.68  Aligned_cols=134  Identities=16%  Similarity=0.245  Sum_probs=100.3

Q ss_pred             ccHHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.|++|||+.      ||+|+||+++.+  + .++++|||.+...... ......|++.|+|   |    |++.
T Consensus       106 ~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~--~-~~~l~dfg~~~~~~~~-~~~~~~~~~~y~a---P----E~~~  174 (286)
T cd06622         106 RITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGN--G-QVKLCDFGVSGNLVAS-LAKTNIGCQSYMA---P----ERIK  174 (286)
T ss_pred             HHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCC--C-CEEEeecCCcccccCC-ccccCCCccCccC---c----chhc
Confidence            3468999999999962      899999999884  3 4999999998765332 3334578899999   9    7664


Q ss_pred             ccC------cce--------------eccCCCCCCCCChHHHHHH---HHhcCCCccCCCCCCCHHHHHHHHHHhhcCcC
Q psy3184          83 NVG------IDN--------------IFSRPPFCVMNDPMQTYNM---IINVGIDKIPFPKHVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        83 ~~~------~~~--------------l~g~~Pf~~~~~~~~~~~~---i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~  139 (185)
                      +..      ++.              ++|..||. ..+.......   +. . .....+|..++.++.+||.+||..+|.
T Consensus       175 ~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~-~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~li~~~l~~~p~  251 (286)
T cd06622         175 SGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYP-PETYANIFAQLSAIV-D-GDPPTLPSGYSDDAQDFVAKCLNKIPN  251 (286)
T ss_pred             CCCCCccCCCCcccchHhHHHHHHHHHhCCCCCC-CcchhhHHHHHHHHh-h-cCCCCCCcccCHHHHHHHHHHcccCcc
Confidence            321      121              88999997 5554444332   33 1 134566777999999999999999999


Q ss_pred             cccCCCCCChhhhhcCCCCCCC
Q psy3184         140 ERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       140 ~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      +||     ++++++.||||...
T Consensus       252 ~Rp-----~~~~l~~~~~~~~~  268 (286)
T cd06622         252 RRP-----TYAQLLEHPWLVKY  268 (286)
T ss_pred             cCC-----CHHHHhcChhhhhc
Confidence            999     55999999999654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.64  E-value=1.1e-15  Score=124.91  Aligned_cols=133  Identities=15%  Similarity=0.213  Sum_probs=98.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.||+|||+.     +++|+||+++.+.   .++|+|||++......  .....++..|+|   |    |++...
T Consensus       123 ~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~---~~kL~dfg~~~~~~~~--~~~~~~~~~y~a---P----E~~~~~  190 (343)
T cd07851         123 LVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDC---ELKILDFGLARHTDDE--MTGYVATRWYRA---P----EIMLNW  190 (343)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHeEECCCC---CEEEcccccccccccc--ccCCcccccccC---H----HHHhCC
Confidence            467999999999998     7899999998853   3999999998765433  345578899999   9    776432


Q ss_pred             -Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCcc-----------------------------CCCC
Q psy3184          85 -GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKI-----------------------------PFPK  120 (185)
Q Consensus        85 -~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~-----------------------------~~p~  120 (185)
                       .++.              ++|..||. +.+....+..+.+ ....+                             ....
T Consensus       191 ~~~~~~~DvwslGv~l~elltg~~pf~-~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (343)
T cd07851         191 MHYNQTVDIWSVGCIMAELLTGKTLFP-GSDHIDQLKRIMN-LVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFS  268 (343)
T ss_pred             CCCCchHhHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHH-hcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhc
Confidence             2222              88999998 6666655555431 10000                             0012


Q ss_pred             CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       121 ~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      .++.++.+||.+||..||.+||     ++.+++.||||+..
T Consensus       269 ~~s~~l~dli~~~l~~~P~~Rp-----t~~ell~h~~~~~~  304 (343)
T cd07851         269 GANPLAIDLLEKMLVLDPDKRI-----TAAEALAHPYLAEY  304 (343)
T ss_pred             cCCHHHHHHHHHhCCCChhhCC-----CHHHHhcCCCcccc
Confidence            4689999999999999999999     56999999999753

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.64  E-value=1.5e-15  Score=121.43  Aligned_cols=137  Identities=19%  Similarity=0.302  Sum_probs=102.2

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.|++.|+.|||+.     |++|.||+++.+.   .++++|||.+...... .......|++.|++   |    |.+.
T Consensus       120 ~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~---p----E~~~  189 (292)
T cd06657         120 AVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDG---RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMA---P----ELIS  189 (292)
T ss_pred             HHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCC---CEEEcccccceecccccccccccccCccccC---H----HHhc
Confidence            3478999999999997     7899999998753   3899999988755332 22334678999999   9    7665


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ...++.              ++|..||. +.+..+....+.............++.++.+++.+||..+|.+||     +
T Consensus       190 ~~~~~~~~Dv~slGvil~el~tg~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~-----~  263 (292)
T cd06657         190 RLPYGPEVDIWSLGIMVIEMVDGEPPYF-NEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRA-----T  263 (292)
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccCc-----C
Confidence            443332              88999998 776666555554111112223345789999999999999999999     5


Q ss_pred             hhhhhcCCCCCCC
Q psy3184         149 IVDIKKHKWFQGF  161 (185)
Q Consensus       149 ~~~ll~hp~f~~~  161 (185)
                      +.+++.||||...
T Consensus       264 ~~~ll~~~~~~~~  276 (292)
T cd06657         264 AAELLKHPFLAKA  276 (292)
T ss_pred             HHHHhcChHHhcc
Confidence            5999999999754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>KOG0667|consensus

Probab=99.64  E-value=1.1e-15  Score=129.95  Aligned_cols=137  Identities=17%  Similarity=0.208  Sum_probs=105.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      -+.||+.||..||..     ||||+|||+..-.+. .|||+|||.+.....  ..++++-+..|.|   |    |++.+.
T Consensus       294 ~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~-~vKVIDFGSSc~~~q--~vytYiQSRfYRA---P----EVILGl  363 (586)
T KOG0667|consen  294 FAQQILTALLFLHELGIIHCDLKPENILLKDPKRS-RIKVIDFGSSCFESQ--RVYTYIQSRFYRA---P----EVILGL  363 (586)
T ss_pred             HHHHHHHHHHHHHhCCeeeccCChhheeeccCCcC-ceeEEecccccccCC--cceeeeecccccc---c----hhhccC
Confidence            378999999999987     899999999876544 599999999875543  4448889999999   9    999999


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CC------------------------------------
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI------------------------------------  113 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~------------------------------------  113 (185)
                      +|+.              .+|.+-|. |.+..+.+..|... |.                                    
T Consensus       364 pY~~~IDmWSLGCIlAEL~tG~PLfp-G~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~~~~~k  442 (586)
T KOG0667|consen  364 PYDTAIDMWSLGCILAELFTGEPLFP-GDNEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSAPRGTK  442 (586)
T ss_pred             CCCCccceeehhhhHHhHhcCccccC-CCCHHHHHHHHHHHhCCCCHHHHHhccccceehhccCCceeeeeeeccccccc
Confidence            9887              88988888 88876666554310 00                                    


Q ss_pred             ------------CccCCC-C----------CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCC
Q psy3184         114 ------------DKIPFP-K----------HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       114 ------------~~~~~p-~----------~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~  162 (185)
                                  .....| .          .-...+.+||++||..||.+|+     +..+.++||||.+..
T Consensus       443 ~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~-----tp~qal~Hpfl~~~~  509 (586)
T KOG0667|consen  443 SPEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERI-----TPAQALNHPFLTGTS  509 (586)
T ss_pred             chhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcC-----CHHHHhcCccccccc
Confidence                        000122 0          1125678999999999999999     559999999998554

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.64  E-value=1.5e-15  Score=123.53  Aligned_cols=126  Identities=14%  Similarity=0.147  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.+....   ......+++.|+|   |    |++.
T Consensus       180 ~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~---~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  249 (338)
T cd05102         180 SFQVARGMEFLASRKCIHRDLAARNILLSENN---VVKICDFGLARDIYKDPDYVRKGSARLPLKWMA---P----ESIF  249 (338)
T ss_pred             HHHHHHHHHHHHHCCEECCCCccceEEEcCCC---cEEEeecccccccccCcchhcccCCCCCccccC---c----HHhh
Confidence            67999999999998     8999999998753   49999999987653321   1123445678999   9    8776


Q ss_pred             ccCcce--------------e-ccCCCCCCCCChHH-HHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          83 NVGIDN--------------I-FSRPPFCVMNDPMQ-TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        83 ~~~~~~--------------l-~g~~Pf~~~~~~~~-~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ...|+.              + .|..||. +.+... ....+. .+ .....|..+++++.+++.+||..||.+||    
T Consensus       250 ~~~~~~~sDiwslG~il~el~~~g~~pf~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~cl~~dp~~RP----  322 (338)
T cd05102         250 DKVYTTQSDVWSFGVLLWEIFSLGASPYP-GVQINEEFCQRLK-DG-TRMRAPENATPEIYRIMLACWQGDPKERP----  322 (338)
T ss_pred             cCCCCcccCHHHHHHHHHHHHhCCCCCCC-CCCccHHHHHHHh-cC-CCCCCCCCCCHHHHHHHHHHccCChhhCc----
Confidence            655544              4 4999998 554433 333343 22 34556778899999999999999999999    


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                       ++.+++.
T Consensus       323 -s~~el~~  329 (338)
T cd05102         323 -TFSALVE  329 (338)
T ss_pred             -CHHHHHH
Confidence             4477653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.64  E-value=1.2e-15  Score=122.77  Aligned_cols=135  Identities=15%  Similarity=0.216  Sum_probs=97.9

Q ss_pred             cccHHHHHHHHHHHhh-c-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQ-A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~-~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ...+.|++.||.|||+ .     |++|+||+++.+  + .++++|||.+..+... .....+|++.|+|   |    |++
T Consensus       102 ~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~--~-~~~l~dfg~~~~~~~~-~~~~~~~~~~~~a---P----E~~  170 (308)
T cd06615         102 GKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSR--G-EIKLCDFGVSGQLIDS-MANSFVGTRSYMS---P----ERL  170 (308)
T ss_pred             HHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecC--C-cEEEccCCCccccccc-ccccCCCCcCccC---h----hHh
Confidence            3457899999999996 3     899999999875  3 3899999988755332 3345689999999   9    776


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcC-----------------------------------
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVG-----------------------------------  112 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~-----------------------------------  112 (185)
                      .+..++.              ++|..||. ..+.......+. ..                                   
T Consensus       171 ~~~~~~~~~DiwslG~~l~~l~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (308)
T cd06615         171 QGTHYTVQSDIWSLGLSLVEMAIGRYPIP-PPDAKELEAMFG-RPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVN  248 (308)
T ss_pred             cCCCCCccchHHHHHHHHHHHHhCCCCCC-CcchhhHHHhhc-CccccccccCCcccccCCCCCccchhhHHHHHHHHhc
Confidence            5544433              88999997 555433322221 00                                   


Q ss_pred             CCccCCC-CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         113 IDKIPFP-KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       113 ~~~~~~p-~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                      ...+..| ..++.++++|+.+||..||.+||     ++++++.||||.+
T Consensus       249 ~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp-----t~~~ll~~~~~~~  292 (308)
T cd06615         249 EPPPKLPSGAFSDEFQDFVDKCLKKNPKERA-----DLKELTKHPFIKR  292 (308)
T ss_pred             CCCccCcCcccCHHHHHHHHHHccCChhhCc-----CHHHHhcChhhhh
Confidence            0112222 23688999999999999999999     5699999999975

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.64  E-value=1.7e-15  Score=119.72  Aligned_cols=134  Identities=16%  Similarity=0.264  Sum_probs=96.3

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||+.     |++|.||+++++.   .++|+|||.+..+.... ......++..|+|   |    |++.
T Consensus       104 ~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~a---P----E~~~  173 (286)
T cd07847         104 KIIWQTLQAVNFCHKHNCIHRDVKPENILITKQG---QIKLCDFGFARILTGPGDDYTDYVATRWYRA---P----ELLV  173 (286)
T ss_pred             HHHHHHHHHHHHHHHCCceecCCChhhEEEcCCC---cEEECccccceecCCCcccccCcccccccCC---H----HHHh
Confidence            3478999999999997     7899999998753   39999999998765443 3334568889999   9    7765


Q ss_pred             c-cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CC---------------CccCCC------------
Q psy3184          83 N-VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI---------------DKIPFP------------  119 (185)
Q Consensus        83 ~-~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~---------------~~~~~p------------  119 (185)
                      + ..++.              ++|..||. +.+..+....+... +.               .....|            
T Consensus       174 ~~~~~~~~~Di~slG~i~~~l~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (286)
T cd07847         174 GDTQYGPPVDVWAIGCVFAELLTGQPLWP-GKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKF  252 (286)
T ss_pred             CCCCcCchhhhHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHh
Confidence            4 22332              88999998 65544333222100 00               000111            


Q ss_pred             CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         120 KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       120 ~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      ..++..+.+||.+||..+|++||     ++.+++.||||
T Consensus       253 ~~~~~~~~~li~~~l~~~p~~Rp-----~~~eil~~~~f  286 (286)
T cd07847         253 PNISSPALSFLKGCLQMDPTERL-----SCEELLEHPYF  286 (286)
T ss_pred             ccCCHHHHHHHHHHhcCCccccC-----CHHHHhcCCCC
Confidence            24688999999999999999999     55999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.64  E-value=1.6e-15  Score=120.08  Aligned_cols=132  Identities=12%  Similarity=0.154  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      +.|++.|++|||+.     +++|+||+++.+.   .++++|||.+...... .......+++.|+|   |    |++.+.
T Consensus       106 ~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  175 (284)
T cd07860         106 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEG---AIKLADFGLARAFGVPVRTYTHEVVTLWYRA---P----EILLGC  175 (284)
T ss_pred             HHHHHHHHHHHHHCCeecCCCCHHHEEECCCC---CEEEeeccchhhcccCccccccccccccccC---C----eEEecC
Confidence            67899999999997     7899999998863   3899999998765433 22233467889999   9    766542


Q ss_pred             C-cce--------------eccCCCCCCCCChHHHHHHHHhcCCCc---------------cCC-----------CCCCC
Q psy3184          85 G-IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK---------------IPF-----------PKHVT  123 (185)
Q Consensus        85 ~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~---------------~~~-----------p~~~s  123 (185)
                      . ++.              ++|..||. +.+.......+......+               ..+           ...++
T Consensus       176 ~~~~~~~Dv~slG~il~~l~tg~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (284)
T cd07860         176 KYYSTAVDIWSLGCIFAEMVTRRALFP-GDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLD  254 (284)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHcccCC
Confidence            2 222              88999998 555443332222000000               011           12478


Q ss_pred             HHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         124 RTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       124 ~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      .+++++|.+||..||.+||     ++++++.||||
T Consensus       255 ~~~~~li~~~l~~~P~~Rp-----t~~~~l~~~~f  284 (284)
T cd07860         255 EDGRDLLSQMLHYDPNKRI-----SAKAALAHPFF  284 (284)
T ss_pred             HHHHHHHHHhcCCCcccCC-----CHHHHhcCCCC
Confidence            9999999999999999999     56999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.63  E-value=1.3e-15  Score=120.90  Aligned_cols=140  Identities=15%  Similarity=0.252  Sum_probs=104.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.||.|||+.     +++|+||+++.+.   .++|+|||.+...... .......+++.|++   |    |++.+
T Consensus       121 i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~---~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~~  190 (286)
T cd06614         121 VCREVLQGLEYLHSQNVIHRDIKSDNILLSKDG---SVKLADFGFAAQLTKEKSKRNSVVGTPYWMA---P----EVIKR  190 (286)
T ss_pred             HHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCC---CEEECccchhhhhccchhhhccccCCcccCC---H----hHhcC
Confidence            478999999999998     6899999999753   3899999987654332 22234568889999   9    76655


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. ..+.......+...+......+..++.+++++|.+||..+|.+||     ++
T Consensus       191 ~~~~~~~Dv~slGvil~~l~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-----t~  264 (286)
T cd06614         191 KDYGPKVDIWSLGIMCIEMAEGEPPYL-REPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRP-----SA  264 (286)
T ss_pred             CCCCCccccHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHhcCCCCCcchhhCCHHHHHHHHHHhccChhhCc-----CH
Confidence            44333              78999998 766665555554222222233344889999999999999999999     55


Q ss_pred             hhhhcCCCCCCCChhh
Q psy3184         150 VDIKKHKWFQGFDWDG  165 (185)
Q Consensus       150 ~~ll~hp~f~~~~~~~  165 (185)
                      .+++.|+||+...|..
T Consensus       265 ~~il~~~~~~~~~~~~  280 (286)
T cd06614         265 EELLQHPFLKKACPKE  280 (286)
T ss_pred             HHHhhChHhhccCchH
Confidence            9999999999876654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.63  E-value=2.3e-15  Score=122.94  Aligned_cols=142  Identities=14%  Similarity=0.184  Sum_probs=99.4

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC----cccccccCCccccccCCCcccc
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG----KILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~----~~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      +..+.||+.||+|||+.     +|||+||+++.+.  ..++++|||.+..+...    .......|+..|+|   |    
T Consensus       117 ~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~--~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----  187 (342)
T cd07854         117 RLFMYQLLRGLKYIHSANVLHRDLKPANVFINTED--LVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRS---P----  187 (342)
T ss_pred             HHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCC--ceEEECCcccceecCCccccccccccccccccccC---H----
Confidence            34578999999999998     7899999998642  24899999998765322    11223467889999   9    


Q ss_pred             cchhc-cCcce--------------eccCCCCCCCCChHHHHHHHHhcC----------------------CCccC----
Q psy3184          79 NMIIN-VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVG----------------------IDKIP----  117 (185)
Q Consensus        79 E~~~~-~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~----------------------~~~~~----  117 (185)
                      |++.. ..++.              ++|..||. +.+.......+....                      .....    
T Consensus       188 E~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (342)
T cd07854         188 RLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFA-GAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLR  266 (342)
T ss_pred             HHHhCccccCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHH
Confidence            76543 22322              88999998 655544443332100                      00011    


Q ss_pred             -CCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         118 -FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       118 -~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                       +...++.++.+||.+||..||.+||     ++.+++.||||+...+.
T Consensus       267 ~~~~~~~~~~~~li~~~L~~dP~~R~-----t~~ell~h~~~~~~~~~  309 (342)
T cd07854         267 DLLPGVNPEALDFLEQILTFNPMDRL-----TAEEALMHPYMSCYSCP  309 (342)
T ss_pred             HHccCCCHHHHHHHHHHhCCCchhcc-----CHHHHhCCCccccccCC
Confidence             1135789999999999999999999     66999999999865443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.63  E-value=5.2e-16  Score=122.64  Aligned_cols=138  Identities=18%  Similarity=0.267  Sum_probs=104.4

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.|+.|||++     +++|+||++..+  + .++++|||.+..+.... ......|+..|+|   |    |.+.
T Consensus       105 ~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~--~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  174 (277)
T cd06642         105 TILREILKGLDYLHSERKIHRDIKAANVLLSEQ--G-DVKLADFGVAGQLTDTQIKRNTFVGTPFWMA---P----EVIK  174 (277)
T ss_pred             HHHHHHHHHHHHHhcCCeeccCCChheEEEeCC--C-CEEEccccccccccCcchhhhcccCcccccC---H----HHhC
Confidence            3478999999999987     789999999875  3 38999999987654332 2334578899999   9    7766


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ...++.              ++|..||. ..+.......+. .+ .....+..++.++.++|.+||..+|.+||     +
T Consensus       175 ~~~~~~~~Dv~slG~il~el~tg~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----~  246 (277)
T cd06642         175 QSAYDFKADIWSLGITAIELAKGEPPNS-DLHPMRVLFLIP-KN-SPPTLEGQYSKPFKEFVEACLNKDPRFRP-----T  246 (277)
T ss_pred             cCCCchhhhHHHHHHHHHHHHhCCCCCc-ccchhhHHhhhh-cC-CCCCCCcccCHHHHHHHHHHccCCcccCc-----C
Confidence            554443              88999998 555555554444 11 24455567899999999999999999999     5


Q ss_pred             hhhhhcCCCCCCCChh
Q psy3184         149 IVDIKKHKWFQGFDWD  164 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~  164 (185)
                      +.+++.||||....+.
T Consensus       247 ~~~il~~~~~~~~~~~  262 (277)
T cd06642         247 AKELLKHKFITRYTKK  262 (277)
T ss_pred             HHHHHHhHHHHHHhhh
Confidence            5999999999755433

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.63  E-value=1.9e-15  Score=119.59  Aligned_cols=133  Identities=17%  Similarity=0.257  Sum_probs=97.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.|+.|||+.     +++|+||+++.+.   .++|+|||.+.......  ......++..|+|   |    |++.
T Consensus       105 ~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~---~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~---P----E~~~  174 (288)
T cd07833         105 YIWQLLQAIAYCHSHNIIHRDIKPENILVSESG---VLKLCDFGFARALRARPASPLTDYVATRWYRA---P----ELLV  174 (288)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHeEECCCC---CEEEEeeecccccCCCccccccCcccccCCcC---C----chhc
Confidence            367899999999997     7899999998853   49999999988665433  3345678999999   9    7765


Q ss_pred             cc-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCC----------------C-------------ccCC
Q psy3184          83 NV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI----------------D-------------KIPF  118 (185)
Q Consensus        83 ~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~----------------~-------------~~~~  118 (185)
                      .. .++.              ++|.+||. +.+..+....+.....                .             ...+
T Consensus       175 ~~~~~~~~~Dv~slG~~l~~l~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (288)
T cd07833         175 GDTNYGKPVDVWAIGCIMAELLDGEPLFP-GDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRY  253 (288)
T ss_pred             CCCCcCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhc
Confidence            54 3332              78999998 5544333322210000                0             0023


Q ss_pred             CCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         119 PKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       119 p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      |..++.++.+||++||..+|.+||     ++.+++.||||
T Consensus       254 ~~~~~~~~~~li~~~l~~~p~~Rp-----s~~~il~~~~f  288 (288)
T cd07833         254 PGKVSSPALDFLKACLRMDPKERL-----TCDELLQHPYF  288 (288)
T ss_pred             CCccchHHHHHHHHHhccCchhcc-----cHHHHhcCCCC
Confidence            345689999999999999999999     56999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.63  E-value=2.2e-15  Score=118.17  Aligned_cols=132  Identities=17%  Similarity=0.276  Sum_probs=99.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC----cccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG----KILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~----~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.|++.||+|||+.     |++|.||+++.+.   .++|+|||.+......    .......|+..|+|   |    |+
T Consensus       111 ~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~---~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  180 (265)
T cd06652         111 YTRQILEGVSYLHSNMIVHRDIKGANILRDSVG---NVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMS---P----EV  180 (265)
T ss_pred             HHHHHHHHHHHHHhCCEecCCCCHHHEEecCCC---CEEECcCccccccccccccccccccCCCCccccC---h----hh
Confidence            378999999999998     7999999998753   3899999988755321    12334578999999   9    77


Q ss_pred             hhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      +.+..++.              ++|..||. ..+.......+. ........|..++..+.++|.+|+. +|.+||    
T Consensus       181 ~~~~~~~~~~Dv~slG~il~el~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp----  253 (265)
T cd06652         181 ISGEGYGRKADIWSVGCTVVEMLTEKPPWA-EFEAMAAIFKIA-TQPTNPVLPPHVSDHCRDFLKRIFV-EAKLRP----  253 (265)
T ss_pred             hcCCCCCcchhHHHHHHHHHHHhhCCCCCC-ccchHHHHHHHh-cCCCCCCCchhhCHHHHHHHHHHhc-ChhhCC----
Confidence            66544433              88999998 555444444444 2223455677789999999999985 899999    


Q ss_pred             CChhhhhcCCCCC
Q psy3184         147 GGIVDIKKHKWFQ  159 (185)
Q Consensus       147 ~~~~~ll~hp~f~  159 (185)
                       ++++++.|||+.
T Consensus       254 -~~~~il~~~~~~  265 (265)
T cd06652         254 -SADELLRHTFVH  265 (265)
T ss_pred             -CHHHHhcCcccC
Confidence             569999999974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.63  E-value=2.4e-15  Score=119.67  Aligned_cols=135  Identities=16%  Similarity=0.207  Sum_probs=96.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||++     +++|+||+++.+. + .++++|||++...... .......+++.|+|   |    |++.+
T Consensus       115 ~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~-~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~a---P----E~~~~  185 (295)
T cd07837         115 FMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQK-G-LLKIADLGLGRAFSIPVKSYTHEIVTLWYRA---P----EVLLG  185 (295)
T ss_pred             HHHHHHHHHHHHHHCCeeecCCChHHEEEecCC-C-eEEEeecccceecCCCccccCCcccccCCCC---h----HHhhC
Confidence            478999999999998     7899999998732 2 4999999998765332 22223467889999   9    76643


Q ss_pred             -cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCC--c------------cCCC-----------CCCC
Q psy3184          84 -VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID--K------------IPFP-----------KHVT  123 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~--~------------~~~p-----------~~~s  123 (185)
                       ..++.              ++|..||. +.+......++......  .            ..+|           ..++
T Consensus       186 ~~~~~~~~Di~slG~~l~~l~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (295)
T cd07837         186 STHYSTPVDIWSVGCIFAEMSRKQPLFP-GDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLS  264 (295)
T ss_pred             CCCCCchHHHHHHHHHHHHHHcCCCCCC-CCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccC
Confidence             22222              88999998 66655544443310000  0            0011           2478


Q ss_pred             HHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCC
Q psy3184         124 RTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ  159 (185)
Q Consensus       124 ~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~  159 (185)
                      .++.+||.+||..||.+||     ++.+++.||||+
T Consensus       265 ~~~~~~i~~~l~~~P~~R~-----~~~eil~~~~~~  295 (295)
T cd07837         265 PEGLDLLQKMLRYDPAKRI-----SAKAALTHPYFD  295 (295)
T ss_pred             HHHHHHHHHHccCChhhcC-----CHHHHhcCCCcC
Confidence            9999999999999999999     669999999985

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.63  E-value=1.5e-15  Score=121.01  Aligned_cols=137  Identities=13%  Similarity=0.187  Sum_probs=98.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||++     +++|+||+++.+.  ..++++|||++....... ......|++.|+|   |    |++.+
T Consensus       107 ~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~--~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~~  177 (294)
T PLN00009        107 YLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRT--NALKLADFGLARAFGIPVRTFTHEVVTLWYRA---P----EILLG  177 (294)
T ss_pred             HHHHHHHHHHHHHhCCeeCCCCCcceEEEECCC--CEEEEcccccccccCCCccccccCceeecccC---H----HHHhC
Confidence            367999999999998     7899999998632  248999999997654332 2234567899999   9    76654


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CCC-----------------ccC--------CCCCC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GID-----------------KIP--------FPKHV  122 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~-----------------~~~--------~p~~~  122 (185)
                      . .++.              ++|.+||. +.+..+....+... +..                 ...        ....+
T Consensus       178 ~~~~~~~~Dv~slG~i~~~l~tg~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (294)
T PLN00009        178 SRHYSTPVDIWSVGCIFAEMVNQKPLFP-GDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTL  256 (294)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcCC
Confidence            2 2332              88999998 66555444433210 000                 000        11347


Q ss_pred             CHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       123 s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      +.++.++|.+||..+|.+||     ++++++.||||.+.
T Consensus       257 ~~~~~~~i~~~l~~~P~~Rp-----s~~~~l~~~~~~~~  290 (294)
T PLN00009        257 EPAGVDLLSKMLRLDPSKRI-----TARAALEHEYFKDL  290 (294)
T ss_pred             ChHHHHHHHHHccCChhhCc-----CHHHHhcCchHhHH
Confidence            89999999999999999999     56999999999865

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.63  E-value=3e-15  Score=117.47  Aligned_cols=133  Identities=14%  Similarity=0.222  Sum_probs=94.2

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.|++.|++|||+.     +++|+||+++.+.   .++++|||.+...... .......|++.|+|   |    |++.
T Consensus       110 ~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  179 (267)
T cd06645         110 YVSRETLQGLYYLHSKGKMHRDIKGANILLTDNG---HVKLADFGVSAQITATIAKRKSFIGTPYWMA---P----EVAA  179 (267)
T ss_pred             HHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCC---CEEECcceeeeEccCcccccccccCcccccC---h----hhhc
Confidence            4578999999999987     7899999998753   3999999998765432 22345689999999   9    7653


Q ss_pred             ---ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          83 ---NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        83 ---~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                         ...++.              ++|..||. ..+...................  ..++..+.++|.+||..+|++|| 
T Consensus       180 ~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~-  257 (267)
T cd06645         180 VERKGGYNQLCDIWAVGITAIELAELQPPMF-DLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRP-  257 (267)
T ss_pred             cccCCCCCchhhhHHHHHHHHHHhcCCCCcc-cccchhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhCc-
Confidence               122322              78889987 4444333333221111111111  24788999999999999999999 


Q ss_pred             CCCCChhhhhcCCC
Q psy3184         144 YQRGGIVDIKKHKW  157 (185)
Q Consensus       144 ~~~~~~~~ll~hp~  157 (185)
                          ++++++.|||
T Consensus       258 ----~~~~ll~~~~  267 (267)
T cd06645         258 ----TAEKLLQHPF  267 (267)
T ss_pred             ----CHHHHhcCCC
Confidence                6699999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.63  E-value=2.1e-15  Score=117.65  Aligned_cols=132  Identities=18%  Similarity=0.266  Sum_probs=97.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...|++.|+.|||+.     |++|+||+++.+  + .++++|||.+....... ......|+..|+|   |    |++..
T Consensus       106 ~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~--~-~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~---P----e~~~~  175 (262)
T cd06613         106 VCRETLKGLAYLHETGKIHRDIKGANILLTED--G-DVKLADFGVSAQLTATIAKRKSFIGTPYWMA---P----EVAAV  175 (262)
T ss_pred             HHHHHHHHHHHHHhCCceecCCChhhEEECCC--C-CEEECccccchhhhhhhhccccccCCccccC---c----hhhcc
Confidence            467899999999997     789999999975  3 39999999987654332 3345678999999   9    77654


Q ss_pred             c---Ccce--------------eccCCCCCCCCChHHHHHHHHhcCC--CccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          84 V---GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI--DKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        84 ~---~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~--~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      .   .++.              ++|.+||. ..+.......+.....  .....+..++.++.+|+++||..+|.+||  
T Consensus       176 ~~~~~~~~~~Di~slG~~l~~~~tg~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp--  252 (262)
T cd06613         176 ERKGGYDGKCDIWALGITAIELAELQPPMF-DLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRP--  252 (262)
T ss_pred             cccCCcCchhhhHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChhhCC--
Confidence            4   3332              88999998 6655544444431110  11223345688999999999999999999  


Q ss_pred             CCCChhhhhcCCC
Q psy3184         145 QRGGIVDIKKHKW  157 (185)
Q Consensus       145 ~~~~~~~ll~hp~  157 (185)
                         ++.+++.|+|
T Consensus       253 ---t~~~il~~~~  262 (262)
T cd06613         253 ---TATKLLQHPF  262 (262)
T ss_pred             ---CHHHHhcCCC
Confidence               5599999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.63  E-value=1.2e-15  Score=137.71  Aligned_cols=137  Identities=18%  Similarity=0.190  Sum_probs=101.7

Q ss_pred             cHHHHHHHHHHHhhc------------CCCCCceEEccCCC--------------CCeeEEcccCceeEeecCccccccc
Q psy3184          10 DTLQVKEMVESMHQA------------EYKADNYVITEGEA--------------GNDLFVSAEGEFQVIKDGKILRLLS   63 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~------------~lkp~Nili~~~~~--------------~~~i~l~d~g~~~~~~~~~~~~~~~   63 (185)
                      .+.||+.||.|||+.            ||||+||+|..+..              ...++|+|||++..+.........+
T Consensus       123 Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~v  202 (1021)
T PTZ00266        123 ITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCV  202 (1021)
T ss_pred             HHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccccccccccC
Confidence            467999999999971            79999999965311              1138999999998775555555678


Q ss_pred             CCccccccCCCcccccchhcc--Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC-CCCCHHH
Q psy3184          64 GRPPFCVMNDPMQTYNMIINV--GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP-KHVTRTA  126 (185)
Q Consensus        64 gt~~y~a~~~P~~~~E~~~~~--~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p-~~~s~~~  126 (185)
                      ||+.|+|   |    |++...  .|+.              ++|..||....+...+...+. .   .+.+| ...+.++
T Consensus       203 GTp~YmA---P----EvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~qli~~lk-~---~p~lpi~~~S~eL  271 (1021)
T PTZ00266        203 GTPYYWS---P----ELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQLISELK-R---GPDLPIKGKSKEL  271 (1021)
T ss_pred             CCccccC---H----HHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHHHHHHHHh-c---CCCCCcCCCCHHH
Confidence            9999999   9    877532  2332              889999983334444444443 2   23333 4578999


Q ss_pred             HHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCC
Q psy3184         127 QSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       127 ~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~  162 (185)
                      .+||..||..+|.+||     ++.+++.|+|++.+.
T Consensus       272 ~dLI~~~L~~dPeeRP-----Sa~QlL~h~~ik~i~  302 (1021)
T PTZ00266        272 NILIKNLLNLSAKERP-----SALQCLGYQIIKNVG  302 (1021)
T ss_pred             HHHHHHHhcCChhHCc-----CHHHHhccHHHhhcC
Confidence            9999999999999999     669999999997654

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.62  E-value=3.6e-15  Score=115.63  Aligned_cols=131  Identities=21%  Similarity=0.353  Sum_probs=101.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc-cccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI-LRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~-~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.|+.|||+.     +++|+||+++.+  + .++++|||.+........ .....|+..|++   |    |....
T Consensus       104 ~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~--~-~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~---p----e~~~~  173 (254)
T cd06627         104 YVYQVLQGLAYLHEQGVIHRDIKAANILTTKD--G-VVKLADFGVATKLNDVSKDDASVVGTPYWMA---P----EVIEM  173 (254)
T ss_pred             HHHHHHHHHHHHhhCCcccCCCCHHHEEECCC--C-CEEEeccccceecCCCcccccccccchhhcC---H----hhhcC
Confidence            378999999999998     789999999884  3 499999999987655332 334678999999   9    76654


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. ..+.......+..  .....+|..++.++.+++.+||..+|.+||     ++
T Consensus       174 ~~~~~~~Dv~~lG~~l~~l~~g~~p~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~-----~~  245 (254)
T cd06627         174 SGASTASDIWSLGCTVIELLTGNPPYY-DLNPMAALFRIVQ--DDHPPLPEGISPELKDFLMQCFQKDPNLRP-----TA  245 (254)
T ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHhc--cCCCCCCCCCCHHHHHHHHHHHhCChhhCc-----CH
Confidence            43332              88999998 5554444444442  235567788999999999999999999999     55


Q ss_pred             hhhhcCCCC
Q psy3184         150 VDIKKHKWF  158 (185)
Q Consensus       150 ~~ll~hp~f  158 (185)
                      .+++.||||
T Consensus       246 ~~~l~~~~~  254 (254)
T cd06627         246 KQLLKHPWI  254 (254)
T ss_pred             HHHhcCCCC
Confidence            999999997

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.62  E-value=3.7e-15  Score=116.40  Aligned_cols=132  Identities=17%  Similarity=0.311  Sum_probs=97.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc-----cccccCCccccccCCCccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI-----LRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~-----~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .+.|++.|++|||+.     |++|+||+++.+  + .++|+|||.+........     .....+++.|++   |    |
T Consensus       104 i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~--~-~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---P----E  173 (264)
T cd06626         104 YTLQLLEGLAYLHSHGIVHRDIKPANIFLDHN--G-VIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMA---P----E  173 (264)
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCHHHEEECCC--C-CEEEcccccccccCCCCCcccccccCCcCCcCccC---h----h
Confidence            367999999999998     689999999884  3 499999999876644322     223578899999   9    7


Q ss_pred             chhccC---cce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCC--CCHHHHHHHHHHhhcCcCc
Q psy3184          80 MIINVG---IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKH--VTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        80 ~~~~~~---~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~--~s~~~~~li~~~l~~dp~~  140 (185)
                      ++....   ++.              ++|..||....+.......+. . ...+.+|..  ++..+.++|.+||..+|.+
T Consensus       174 ~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  251 (264)
T cd06626         174 VITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVG-A-GHKPPIPDSLQLSPEGKDFLDRCLESDPKK  251 (264)
T ss_pred             hccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHHHHHHh-c-CCCCCCCcccccCHHHHHHHHHHccCCccc
Confidence            665433   222              889999973334444433343 2 234556654  4999999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCC
Q psy3184         141 RLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       141 R~~~~~~~~~~ll~hp~f  158 (185)
                      ||     ++.+++.|||+
T Consensus       252 R~-----~~~~i~~~~~~  264 (264)
T cd06626         252 RP-----TASELLQHPFV  264 (264)
T ss_pred             CC-----CHHHHhcCCCC
Confidence            99     55999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.62  E-value=2e-15  Score=119.36  Aligned_cols=134  Identities=19%  Similarity=0.317  Sum_probs=103.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.|+.|||+.     |++|.||+++.+  + .++++|||.+..+.... ......|+..|++   |    |.+..
T Consensus       106 ~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~--~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~~  175 (277)
T cd06641         106 ILREILKGLDYLHSEKKIHRDIKAANVLLSEH--G-EVKLADFGVAGQLTDTQIKRNTFVGTPFWMA---P----EVIKQ  175 (277)
T ss_pred             HHHHHHHHHHHHccCCeecCCCCHHhEEECCC--C-CEEEeecccceecccchhhhccccCCccccC---h----hhhcc
Confidence            368999999999998     789999999875  3 38999999987664432 2334678899999   9    76654


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. ..+.......+.. + ....++..++.++.+++.+||..+|.+||     ++
T Consensus       176 ~~~~~~~Dv~slG~~l~~l~~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp-----~~  247 (277)
T cd06641         176 SAYDSKADIWSLGITAIELAKGEPPHS-ELHPMKVLFLIPK-N-NPPTLEGNYSKPLKEFVEACLNKEPSFRP-----TA  247 (277)
T ss_pred             CCCCchhhHHHHHHHHHHHHcCCCCCC-ccchHHHHHHHhc-C-CCCCCCcccCHHHHHHHHHHccCChhhCc-----CH
Confidence            43332              88999998 6666666665552 2 34556677899999999999999999999     55


Q ss_pred             hhhhcCCCCCCC
Q psy3184         150 VDIKKHKWFQGF  161 (185)
Q Consensus       150 ~~ll~hp~f~~~  161 (185)
                      .+++.||||...
T Consensus       248 ~~~l~~~~~~~~  259 (277)
T cd06641         248 KELLKHKFIVRF  259 (277)
T ss_pred             HHHHhCHHHhhh
Confidence            999999999754

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.62  E-value=1.4e-15  Score=123.86  Aligned_cols=136  Identities=15%  Similarity=0.218  Sum_probs=97.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.||.|||++     +++|+||+++.+.   .++|+|||++...... .......++..|+|   |    |++..
T Consensus       113 i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  182 (337)
T cd07858         113 FLYQLLRGLKYIHSANVLHRDLKPSNLLLNANC---DLKICDFGLARTTSEKGDFMTEYVVTRWYRA---P----ELLLN  182 (337)
T ss_pred             HHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCC---CEEECcCccccccCCCcccccccccccCccC---h----HHHhc
Confidence            467999999999998     7899999998753   4999999998766433 23345678899999   9    76653


Q ss_pred             -cCcce--------------eccCCCCCCCCChHHHHHHHHhcCC-------------------------Ccc---CCCC
Q psy3184          84 -VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI-------------------------DKI---PFPK  120 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~-------------------------~~~---~~p~  120 (185)
                       ..++.              ++|.+||. +.+.......+.....                         ...   ....
T Consensus       183 ~~~~~~~~DiwslG~il~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (337)
T cd07858         183 CSEYTTAIDVWSVGCIFAELLGRKPLFP-GKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFP  261 (337)
T ss_pred             CCCCCCcccHHHHHHHHHHHHcCCCCCC-CCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHcc
Confidence             22222              78999998 6654333322210000                         000   0113


Q ss_pred             CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       121 ~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      .++.++.++|++||..||.+||     ++++++.||||..+
T Consensus       262 ~~~~~~~~li~~~l~~~P~~Rp-----s~~ell~h~~~~~~  297 (337)
T cd07858         262 HANPLAIDLLEKMLVFDPSKRI-----TVEEALAHPYLASL  297 (337)
T ss_pred             cCCHHHHHHHHHHhcCChhhcc-----CHHHHHcCcchhhh
Confidence            5789999999999999999999     66999999999765

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.62  E-value=2.9e-15  Score=118.52  Aligned_cols=128  Identities=18%  Similarity=0.196  Sum_probs=99.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.|++.||.|||++     |+||+||+++.+.   .++|+|||.+.......   ......+++.|+|   |    |.+
T Consensus       129 ~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~~---~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  198 (283)
T cd05048         129 IAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGL---TVKISDFGLSRDIYSADYYRVQSKSLLPVRWMP---P----EAI  198 (283)
T ss_pred             HHHHHHHHHHHHHhCCeeccccccceEEEcCCC---cEEECCCcceeeccccccccccCCCcccccccC---H----HHh
Confidence            578999999999998     8999999998853   48999999987653321   2233466788999   9    776


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. +.+..++...+. .+ .....|..++.++.+|+.+|+..||.+||    
T Consensus       199 ~~~~~~~~sDv~slG~il~el~~~g~~p~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp----  271 (283)
T cd05048         199 LYGKFTTESDIWSFGVVLWEIFSYGLQPYY-GFSNQEVIEMIR-SR-QLLPCPEDCPARVYALMIECWNEIPARRP----  271 (283)
T ss_pred             ccCcCchhhhHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHH-cC-CcCCCcccCCHHHHHHHHHHccCChhhCc----
Confidence            5544443              44 999999 888888887776 33 34456778999999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.+++++
T Consensus       272 -~~~~i~~~  279 (283)
T cd05048         272 -RFKDIHTR  279 (283)
T ss_pred             -CHHHHHHH
Confidence             55887754

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.62  E-value=2.9e-15  Score=121.92  Aligned_cols=136  Identities=18%  Similarity=0.263  Sum_probs=95.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.|++.||.|||+.     ||||+||+++.+.   .++++|||++.......    .....+|++.|+|   |    |.
T Consensus       111 i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  180 (336)
T cd07849         111 FLYQILRGLKYIHSANVLHRDLKPSNLLLNTNC---DLKICDFGLARIADPEHDHTGFLTEYVATRWYRA---P----EI  180 (336)
T ss_pred             HHHHHHHHHHHHHhCCeeccCCCHHHEEECCCC---CEEECcccceeeccccccccCCcCCcCcCCCccC---h----HH
Confidence            367999999999998     7899999998853   39999999987654321    2234578999999   9    76


Q ss_pred             hhc-cCcce--------------eccCCCCCCCCChHHHHHHHHh--------------c---------CCCccCC----
Q psy3184          81 IIN-VGIDN--------------IFSRPPFCVMNDPMQTYNMIIN--------------V---------GIDKIPF----  118 (185)
Q Consensus        81 ~~~-~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~--------------~---------~~~~~~~----  118 (185)
                      +.+ ..++.              ++|.+||. +.+.......+..              .         .......    
T Consensus       181 ~~~~~~~~~~~DvwslGvil~el~~G~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (336)
T cd07849         181 MLNSKGYTKAIDIWSVGCILAEMLSNRPLFP-GKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNK  259 (336)
T ss_pred             hhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHH
Confidence            543 22332              88999997 5554332221110              0         0000011    


Q ss_pred             -CCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         119 -PKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       119 -p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                       ...++.++.++|.+||..||.+||     ++.+++.||||+..
T Consensus       260 ~~~~~~~~~~~li~~~l~~dP~~Rp-----t~~e~l~hp~~~~~  298 (336)
T cd07849         260 LFPNADPKALDLLDKMLTFNPHKRI-----TVEEALAHPYLEQY  298 (336)
T ss_pred             HhcccCcHHHHHHHHHcCCChhhCc-----CHHHHhcCcccccc
Confidence             124688999999999999999999     55999999999854

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.62  E-value=2.4e-15  Score=118.93  Aligned_cols=134  Identities=19%  Similarity=0.310  Sum_probs=96.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||+.     |++|+||+++.+  + .++++|||.+.......  ......|+..|+|   |    |++.
T Consensus       104 ~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~--~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  173 (286)
T cd07832         104 YMRMLLKGVAYMHANGIMHRDLKPANLLISAD--G-VLKIADFGLARLFSEEEPRLYSHQVATRWYRA---P----ELLY  173 (286)
T ss_pred             HHHHHHHHHHHHHHCCeecCCcCHHHEEEcCC--C-cEEEeeeeecccccCCCCCccccccCcccccC---c----eeee
Confidence            367999999999998     789999999884  3 38999999988664432  2334578999999   9    7664


Q ss_pred             ccC-cce--------------eccCCCCCCCCChHHHHHHHHhcCCC----------------ccCCC-----------C
Q psy3184          83 NVG-IDN--------------IFSRPPFCVMNDPMQTYNMIINVGID----------------KIPFP-----------K  120 (185)
Q Consensus        83 ~~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~----------------~~~~p-----------~  120 (185)
                      ... ++.              ++|.+||. +.+....+..+...-..                ...++           .
T Consensus       174 ~~~~~~~~~Di~slG~~l~~l~tg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (286)
T cd07832         174 GARKYDPGVDLWAVGCIFAELLNGSPLFP-GENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFP  252 (286)
T ss_pred             ccccCCchhHHHHHHHHHHHHHcCCcCcC-CCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCC
Confidence            322 222              78888887 66655544443310000                00111           2


Q ss_pred             CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCC
Q psy3184         121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ  159 (185)
Q Consensus       121 ~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~  159 (185)
                      ..+.++.++|.+||..+|.+||     ++++++.||||.
T Consensus       253 ~~~~~~~~li~~~l~~~p~~R~-----~~~~~l~h~~~~  286 (286)
T cd07832         253 DASPEALDLLKGLLVYDPSKRL-----SAAEALRHPYFT  286 (286)
T ss_pred             CccHHHHHHHHHHhccChhhCC-----CHHHHhhCcCcC
Confidence            4579999999999999999999     569999999983

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.62  E-value=2.2e-15  Score=120.48  Aligned_cols=132  Identities=19%  Similarity=0.184  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-----ccccccCCccccccCCCcccccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      +.||+.||+|||++     ||+|+||+++.+.   .++|+|||.+.......     ......++..|+|   |    |+
T Consensus       125 ~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  194 (310)
T cd07865         125 MKMLLNGLYYIHRNKILHRDMKAANILITKDG---ILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRP---P----EL  194 (310)
T ss_pred             HHHHHHHHHHHHHCCeeccCCCHHHEEECCCC---cEEECcCCCcccccCCcccCCCCccCcccCccccC---c----HH
Confidence            67999999999998     7899999998753   48999999987654321     2234567889999   9    76


Q ss_pred             hhccC-cce--------------eccCCCCCCCCChHHHHHHHHhc-CC-C--------------ccCCC----------
Q psy3184          81 IINVG-IDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI-D--------------KIPFP----------  119 (185)
Q Consensus        81 ~~~~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~-~--------------~~~~p----------  119 (185)
                      +.+.. ++.              ++|..||. +.+.......+... +. .              ...+|          
T Consensus       195 ~~~~~~~~~~~Di~slG~~l~el~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (310)
T cd07865         195 LLGERDYGPPIDMWGAGCIMAEMWTRSPIMQ-GNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKER  273 (310)
T ss_pred             hcCCcccCchhhhHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCccchhhHHh
Confidence            54322 222              78999998 66655443332210 00 0              00111          


Q ss_pred             ---CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         120 ---KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       120 ---~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                         ...+..+.+||.+||..||.+||     ++++++.||||
T Consensus       274 l~~~~~~~~~~dli~~~l~~~P~~R~-----t~~e~l~h~~f  310 (310)
T cd07865         274 LKPYVKDPHALDLIDKLLVLDPAKRI-----DADTALNHDFF  310 (310)
T ss_pred             cccccCCHHHHHHHHHHhcCChhhcc-----CHHHHhcCCCC
Confidence               12367888999999999999999     66999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.62  E-value=3.5e-15  Score=115.93  Aligned_cols=130  Identities=16%  Similarity=0.225  Sum_probs=102.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.||.|||+.     +++|.||+++.+  + .++++|||.+...... ......|++.|++   |    |.+...
T Consensus       108 ~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~--~-~~kl~d~g~~~~~~~~-~~~~~~~~~~~~~---P----e~~~~~  176 (256)
T cd08530         108 IFIQLLRGLQALHEQKILHRDLKSANILLVAN--D-LVKIGDLGISKVLKKN-MAKTQIGTPHYMA---P----EVWKGR  176 (256)
T ss_pred             HHHHHHHHHHHHhhCCcccCCCCcceEEEecC--C-cEEEeeccchhhhccC-CcccccCCccccC---H----HHHCCC
Confidence            356899999999998     789999999884  3 4999999998766554 3334578899999   9    776655


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|..||. ..+.......+. .+ .....+..++.++++++.+||..+|.+||     ++.
T Consensus       177 ~~~~~~D~~slG~~~~~l~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----~~~  248 (256)
T cd08530         177 PYSYKSDIWSLGCLLYEMATFAPPFE-ARSMQDLRYKVQ-RG-KYPPIPPIYSQDLQNFIRSMLQVKPKLRP-----NCD  248 (256)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHh-cC-CCCCCchhhCHHHHHHHHHHcCCCcccCC-----CHH
Confidence            4443              78999998 777776666665 22 23445567899999999999999999999     559


Q ss_pred             hhhcCCCC
Q psy3184         151 DIKKHKWF  158 (185)
Q Consensus       151 ~ll~hp~f  158 (185)
                      +++.||+.
T Consensus       249 ~~l~~p~~  256 (256)
T cd08530         249 KILASPAV  256 (256)
T ss_pred             HHhcCCCC
Confidence            99999974

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.62  E-value=3.1e-15  Score=115.35  Aligned_cols=130  Identities=19%  Similarity=0.277  Sum_probs=98.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ...|++.|+.|||+.     |++|+||+++.+  + .++|+|||.+.............|+..|++   |    |.+...
T Consensus       103 i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~--~-~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~---P----E~~~~~  172 (253)
T cd05122         103 VCKELLKGLEYLHSNGIIHRDIKAANILLTSD--G-EVKLIDFGLSAQLSDTKARNTMVGTPYWMA---P----EVINGK  172 (253)
T ss_pred             HHHHHHHHHHHhhcCCEecCCCCHHHEEEccC--C-eEEEeeccccccccccccccceecCCcccC---H----HHHcCC
Confidence            367899999999997     789999999874  3 499999999876655432456678999999   9    766544


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC--CCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~--~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      .++.              ++|..||. ..+.......+..  ......+.  .++.++.++|.+||..||.+||     +
T Consensus       173 ~~~~~~Dv~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~-----t  244 (253)
T cd05122         173 PYDYKADIWSLGITAIELAEGKPPYS-ELPPMKALFKIAT--NGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRP-----T  244 (253)
T ss_pred             CCCccccHHHHHHHHHHHHhCCCCCC-CCchHHHHHHHHh--cCCCCcCcccccCHHHHHHHHHHccCChhhCC-----C
Confidence            3332              88999998 6654444444431  12333333  3489999999999999999999     6


Q ss_pred             hhhhhcCCC
Q psy3184         149 IVDIKKHKW  157 (185)
Q Consensus       149 ~~~ll~hp~  157 (185)
                      +.+++.|||
T Consensus       245 ~~~~l~~~~  253 (253)
T cd05122         245 AEQLLKHPF  253 (253)
T ss_pred             HHHHhcCCC
Confidence            699999998

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.62  E-value=4.8e-15  Score=119.01  Aligned_cols=130  Identities=16%  Similarity=0.263  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc--
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN--   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~--   83 (185)
                      +.|++.||.|||+.     +++|+||+++.+.   .++++|||.+......   ....|++.|+|   |    |++..  
T Consensus       121 ~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~---~~kL~dfg~~~~~~~~---~~~~~~~~y~a---P----E~~~~~~  187 (307)
T cd06607         121 CHGALQGLAYLHSHERIHRDIKAGNILLTEPG---TVKLADFGSASLVSPA---NSFVGTPYWMA---P----EVILAMD  187 (307)
T ss_pred             HHHHHHHHHHHHHCCceecCCCcccEEECCCC---CEEEeecCcceecCCC---CCccCCccccC---c----eeeeccC
Confidence            67899999999997     6899999998853   3999999988755332   34578899999   9    65531  


Q ss_pred             -cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCC-CCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          84 -VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPF-PKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~-p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                       ..++.              ++|..||. +.+.......+. .. ..+.. +..++.++.++|.+||..||.+||     
T Consensus       188 ~~~~~~~sDv~s~G~il~el~tg~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----  259 (307)
T cd06607         188 EGQYDGKVDVWSLGITCIELAERKPPLF-NMNAMSALYHIA-QN-DSPTLSSNDWSDYFRNFVDSCLQKIPQDRP-----  259 (307)
T ss_pred             CCCCCcccchHHHHHHHHHHHcCCCCCC-CccHHHHHHHHh-cC-CCCCCCchhhCHHHHHHHHHHhcCChhhCc-----
Confidence             22221              88999998 777666555554 22 22333 345789999999999999999999     


Q ss_pred             ChhhhhcCCCCCCC
Q psy3184         148 GIVDIKKHKWFQGF  161 (185)
Q Consensus       148 ~~~~ll~hp~f~~~  161 (185)
                      ++.+++.||||...
T Consensus       260 ~~~~il~~~~~~~~  273 (307)
T cd06607         260 SSEELLKHRFVLRE  273 (307)
T ss_pred             CHHHHhcChhhccc
Confidence            55999999999754

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.62  E-value=3.9e-15  Score=120.96  Aligned_cols=135  Identities=18%  Similarity=0.281  Sum_probs=95.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-----ccccccCCccccccCCCccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-----ILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-----~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .+.||+.||+|||+.     |+||+||+++.+.   .++|+|||.+.......     ......|++.|+|   |    |
T Consensus       110 ~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~a---P----E  179 (332)
T cd07857         110 FIYQILCGLKYIHSANVLHRDLKPGNLLVNADC---ELKICDFGLARGFSENPGENAGFMTEYVATRWYRA---P----E  179 (332)
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCC---CEEeCcCCCceecccccccccccccCcccCccccC---c----H
Confidence            468999999999998     7899999998853   39999999998654321     1234678999999   9    7


Q ss_pred             chhc-cCcce--------------eccCCCCCCCCChHHHHHHHHhc-------------------------CCCccCCC
Q psy3184          80 MIIN-VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-------------------------GIDKIPFP  119 (185)
Q Consensus        80 ~~~~-~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-------------------------~~~~~~~p  119 (185)
                      .+.+ ..++.              ++|.+||. +.+....+..+...                         ......++
T Consensus       180 ~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (332)
T cd07857         180 IMLSFQSYTKAIDVWSVGCILAELLGRKPVFK-GKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFE  258 (332)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCC-CCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchH
Confidence            6543 23332              78899998 65543333222200                         00001111


Q ss_pred             ---CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         120 ---KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       120 ---~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                         ...+.++.+++.+||..||.+||     ++.+++.|||++.
T Consensus       259 ~~~~~~~~~~~~li~~~l~~~P~~R~-----t~~~ll~~~~~~~  297 (332)
T cd07857         259 SIFPNANPLALDLLEKLLAFDPTKRI-----SVEEALEHPYLAI  297 (332)
T ss_pred             hhCCCCCHHHHHHHHHHccCCcccCC-----CHHHHhcChhhhh
Confidence               23588999999999999999999     6699999999953

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.62  E-value=5.8e-15  Score=115.07  Aligned_cols=127  Identities=21%  Similarity=0.297  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      +.||+.||.|||++     +++|+||+++.+.   .++++|||.+...... .......|++.|+|   |    |++...
T Consensus       106 ~~~i~~al~~lH~~~i~H~dl~p~nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~a---P----E~~~~~  175 (255)
T cd08219         106 FVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNG---KVKLGDFGSARLLTSPGAYACTYVGTPYYVP---P----EIWENM  175 (255)
T ss_pred             HHHHHHHHHHHhhCCcccCCCCcceEEECCCC---cEEEcccCcceeecccccccccccCCccccC---H----HHHccC
Confidence            68999999999997     7899999998753   3899999998766442 23345678999999   9    776554


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|..||. ..+.......+. .+ .....|..++.++.+||.+||..||.+||     ++.
T Consensus       176 ~~~~~~Dv~slG~i~~~l~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~P~~Rp-----~~~  247 (255)
T cd08219         176 PYNNKSDIWSLGCILYELCTLKHPFQ-ANSWKNLILKVC-QG-SYKPLPSHYSYELRSLIKQMFKRNPRSRP-----SAT  247 (255)
T ss_pred             CcCchhhhhhhchhheehhhccCCCC-CCCHHHHHHHHh-cC-CCCCCCcccCHHHHHHHHHHHhCCcccCC-----CHH
Confidence            4332              88999998 888777777776 22 23456678899999999999999999999     558


Q ss_pred             hhhcC
Q psy3184         151 DIKKH  155 (185)
Q Consensus       151 ~ll~h  155 (185)
                      +++.-
T Consensus       248 ~il~~  252 (255)
T cd08219         248 TILSR  252 (255)
T ss_pred             HHhhc
Confidence            87753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.61  E-value=2.5e-15  Score=122.81  Aligned_cols=150  Identities=16%  Similarity=0.215  Sum_probs=103.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||+.     |++|.||+++.+  + .++++|||.+.....  ......+++.|++   |    |++...
T Consensus       123 i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~--~-~~kl~dfg~~~~~~~--~~~~~~~~~~y~a---P----E~~~~~  190 (343)
T cd07880         123 LVYQMLKGLKYIHAAGIIHRDLKPGNLAVNED--C-ELKILDFGLARQTDS--EMTGYVVTRWYRA---P----EVILNW  190 (343)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEEcCC--C-CEEEeeccccccccc--CccccccCCcccC---H----HHHhCC
Confidence            478999999999997     789999999875  3 389999999876533  2334577899999   9    776542


Q ss_pred             -Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCC----------------------cc------CCCCC
Q psy3184          85 -GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID----------------------KI------PFPKH  121 (185)
Q Consensus        85 -~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~----------------------~~------~~p~~  121 (185)
                       .++.              ++|..||. +.+....+..+......                      ..      .....
T Consensus       191 ~~~~~~~Di~slG~ll~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (343)
T cd07880         191 MHYTQTVDIWSVGCIMAEMLTGKPLFK-GHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPN  269 (343)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccC
Confidence             2222              88999998 66554444333210000                      00      11135


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVA  179 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~  179 (185)
                      ++.++.++|.+||..||.+||     ++.+++.||||+..  .........+||..+.
T Consensus       270 ~~~~~~~li~~~l~~dP~~R~-----t~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~  320 (343)
T cd07880         270 ANPLAVNVLEKMLVLDAESRI-----TAAEALAHPYFEEF--HDPEDETEAPPYDDSF  320 (343)
T ss_pred             CChHHHHHHHHHcCCChhhCC-----CHHHHhcCccHhhh--cCcccccCCCCccccH
Confidence            788999999999999999999     55999999999854  2222233345555443

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.61  E-value=4.4e-15  Score=116.80  Aligned_cols=132  Identities=19%  Similarity=0.224  Sum_probs=96.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     |++|+||+++.+  + .++++|||.+......   .......|+..|+|   |    |++
T Consensus       113 ~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~--~-~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~---P----E~~  182 (272)
T cd06629         113 FTEQVLEGLAYLHSKGILHRDLKADNLLVDAD--G-ICKISDFGISKKSDDIYDNDQNMSMQGSVFWMA---P----EVI  182 (272)
T ss_pred             HHHHHHHHHHHHhhCCeeecCCChhhEEEcCC--C-eEEEeeccccccccccccccccccccCCccccC---H----HHh
Confidence            467999999999997     789999999875  3 3999999998755322   12334578899999   9    776


Q ss_pred             hccC--cce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC----CCCHHHHHHHHHHhhcCcCcc
Q psy3184          82 INVG--IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK----HVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        82 ~~~~--~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~----~~s~~~~~li~~~l~~dp~~R  141 (185)
                      ....  ++.              ++|..||. ..+.......+. .......+|.    .++.+++++|.+||..+|.+|
T Consensus       183 ~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  260 (272)
T cd06629         183 HSYSQGYSAKVDIWSLGCVVLEMFAGRRPWS-DEEAIAAMFKLG-NKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNR  260 (272)
T ss_pred             ccccCCCCccchhHHHHHHHHHHHhCCCCCc-CcchHHHHHHhh-ccccCCcCCccccccCCHHHHHHHHHHhcCChhhC
Confidence            5432  322              78999997 554444333333 1122334443    468999999999999999999


Q ss_pred             cCCCCCChhhhhcCCCC
Q psy3184         142 LGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       142 ~~~~~~~~~~ll~hp~f  158 (185)
                      |     ++++++.||||
T Consensus       261 p-----s~~~il~~~~~  272 (272)
T cd06629         261 P-----TARELLQHPFI  272 (272)
T ss_pred             C-----CHHHHhhCCCC
Confidence            9     55999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.61  E-value=2.8e-15  Score=118.23  Aligned_cols=135  Identities=19%  Similarity=0.330  Sum_probs=101.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.|+.|||+.     +++|+||+++.+  + .++++|||.+....... ......|+..|+|   |    |.+..
T Consensus       106 i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~--~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  175 (277)
T cd06917         106 IIREVLVALKYIHKVGVIHRDIKAANILVTNT--G-NVKLCDFGVAALLNQNSSKRSTFVGTPYWMA---P----EVITE  175 (277)
T ss_pred             HHHHHHHHHHHHHhCCcccCCcCHHHEEEcCC--C-CEEEccCCceeecCCCccccccccCCcceeC---H----HHhcc
Confidence            467999999999997     789999999984  3 49999999988765432 2344578999999   9    76543


Q ss_pred             -cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC-CCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          84 -VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK-HVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~-~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                       ..++.              ++|..||. +.+.......+..  .....++. .++.++.+++.+||..||.+||     
T Consensus       176 ~~~~~~~~Dv~slG~~l~~ll~g~~p~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~-----  247 (277)
T cd06917         176 GKYYDTKADIWSLGITIYEMATGNPPYS-DVDAFRAMMLIPK--SKPPRLEDNGYSKLLREFVAACLDEEPKERL-----  247 (277)
T ss_pred             CCccccchhHHHHHHHHHHHHhCCCCCC-CCChhhhhhcccc--CCCCCCCcccCCHHHHHHHHHHcCCCcccCc-----
Confidence             22222              88999998 6665555444331  12334443 3789999999999999999999     


Q ss_pred             ChhhhhcCCCCCCCC
Q psy3184         148 GIVDIKKHKWFQGFD  162 (185)
Q Consensus       148 ~~~~ll~hp~f~~~~  162 (185)
                      ++.+++.|+||+...
T Consensus       248 ~~~~il~~~~~~~~~  262 (277)
T cd06917         248 SAEELLKSKWIKAHS  262 (277)
T ss_pred             CHHHHhhChHhhccc
Confidence            559999999997654

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.61  E-value=4.1e-15  Score=117.31  Aligned_cols=133  Identities=16%  Similarity=0.180  Sum_probs=97.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||+.     +++|+||+++.+.   .++++|||.+....... ......++..|+|   |    |++..
T Consensus       103 ~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~---~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~---P----E~~~~  172 (283)
T cd05118         103 YLYQLLQGLAFCHSHGILHRDLKPENLLINTEG---VLKLADFGLARSFGSPVRPYTHYVVTRWYRA---P----ELLLG  172 (283)
T ss_pred             HHHHHHHHHHHHHHCCeeecCcCHHHEEECCCC---cEEEeeeeeeEecCCCcccccCccCcccccC---c----HHHhc
Confidence            468999999999998     7899999998753   39999999987665433 2334568889999   9    87665


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCC----------------ccCC-----------CCC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID----------------KIPF-----------PKH  121 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~----------------~~~~-----------p~~  121 (185)
                      . .++.              ++|..||. +.+..+....+......                ...+           ...
T Consensus       173 ~~~~~~~~Di~slG~~l~~l~tg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T cd05118         173 DKGYSTPVDIWSVGCIFAELLSRRPLFP-GKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPN  251 (283)
T ss_pred             CCCCCchhHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhh
Confidence            4 3332              88999998 66655444433211000                0011           124


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      ++.++.+||.+||..||.+||     ++.+++.||||
T Consensus       252 ~~~~~~~~i~~~l~~~P~~Rp-----~~~~ll~~~~~  283 (283)
T cd05118         252 ASPQALDLLSQMLHYDPHKRI-----TAEQALAHPYF  283 (283)
T ss_pred             hCHHHHHHHHHHhccCcccCc-----CHHHHhhCCCC
Confidence            688999999999999999999     66999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.61  E-value=4.4e-15  Score=118.39  Aligned_cols=136  Identities=14%  Similarity=0.152  Sum_probs=97.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||++     ||+|+||+++.+.   .++|+|||.+...... .......+++.|+|   |    |.+.+
T Consensus       107 ~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  176 (298)
T cd07841         107 YMLMTLRGLEYLHSNWILHRDLKPNNLLIASDG---VLKLADFGLARSFGSPNRKMTHQVVTRWYRA---P----ELLFG  176 (298)
T ss_pred             HHHHHHHHHHHHHhCCeeecCCChhhEEEcCCC---CEEEccceeeeeccCCCccccccccceeeeC---H----HHHhC
Confidence            368999999999998     7899999999853   3999999999876543 22334467888999   9    76643


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCC--------------------ccC-----CCCCCC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID--------------------KIP-----FPKHVT  123 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~--------------------~~~-----~p~~~s  123 (185)
                      . .++.              ++|.+||. +.+....+.++...-..                    ...     .....+
T Consensus       177 ~~~~~~~~Dv~slG~il~e~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (298)
T cd07841         177 ARHYGVGVDMWSVGCIFAELLLRVPFLP-GDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAAS  255 (298)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHcCCcccc-CCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhccccc
Confidence            2 2322              77888887 66655544444310000                    000     113457


Q ss_pred             HHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         124 RTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       124 ~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      .++.++|.+||..||.+||     ++.+++.|+||++.
T Consensus       256 ~~~~~li~~~l~~~P~~R~-----s~~e~l~~~~~~~~  288 (298)
T cd07841         256 DDALDLLQRLLTLNPNKRI-----TARQALEHPYFSND  288 (298)
T ss_pred             HHHHHHHHHHhcCCcccCc-----CHHHHhhCccccCC
Confidence            8999999999999999999     66999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.61  E-value=7e-15  Score=118.60  Aligned_cols=135  Identities=16%  Similarity=0.195  Sum_probs=99.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      .+.||+.|+.|||+.     +++|+||++..+.   .++++|||.+.....   .....|+..|+|   |    |++.. 
T Consensus       126 ~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~---~~kL~dfg~~~~~~~---~~~~~~~~~y~a---P----E~~~~~  192 (313)
T cd06633         126 ITHGALQGLAYLHSHNMIHRDIKAGNILLTEPG---QVKLADFGSASKSSP---ANSFVGTPYWMA---P----EVILAM  192 (313)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCChhhEEECCCC---CEEEeecCCCcccCC---CCCccccccccC---h----hhcccc
Confidence            367899999999998     7899999998753   399999998764322   235678999999   9    76531 


Q ss_pred             --cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          84 --VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        84 --~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                        ..++.              ++|..||. ..+.......+.. ...+......++..+++|+.+||..+|.+||     
T Consensus       193 ~~~~~~~~sDv~slGvil~el~~g~~p~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rp-----  265 (313)
T cd06633         193 DEGQYDGKVDVWSLGITCIELAERKPPLF-NMNAMSALYHIAQ-NDSPTLQSNEWTDSFRGFVDYCLQKIPQERP-----  265 (313)
T ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHh-cCCCCCCccccCHHHHHHHHHHccCChhhCc-----
Confidence              22322              78999998 6665555555541 1111222245788999999999999999999     


Q ss_pred             ChhhhhcCCCCCCCChh
Q psy3184         148 GIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       148 ~~~~ll~hp~f~~~~~~  164 (185)
                      ++.+++.||||+...-.
T Consensus       266 ~~~~~l~~~~~~~~~~~  282 (313)
T cd06633         266 ASAELLRHDFVRRDRPA  282 (313)
T ss_pred             CHHHHhcCcccCCCchh
Confidence            55999999999865433

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.61  E-value=5.1e-15  Score=116.17  Aligned_cols=131  Identities=18%  Similarity=0.264  Sum_probs=100.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC----cccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG----KILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~----~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||.|||+.     +++|+||+++.+.   .++++|||.++.....    .......|+..|+|   |    |+
T Consensus       111 ~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  180 (264)
T cd06653         111 YTRQILQGVSYLHSNMIVHRDIKGANILRDSAG---NVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMS---P----EV  180 (264)
T ss_pred             HHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCC---CEEECccccccccccccccCccccccCCcccccC---H----hh
Confidence            367999999999998     7899999998753   3899999998755321    12234678999999   9    87


Q ss_pred             hhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      +.+..++.              ++|..||. ..+.......+. .......+|..++++++++|.+|+. +|..||    
T Consensus       181 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~----  253 (264)
T cd06653         181 ISGEGYGRKADVWSVACTVVEMLTEKPPWA-EYEAMAAIFKIA-TQPTKPMLPDGVSDACRDFLKQIFV-EEKRRP----  253 (264)
T ss_pred             hcCCCCCccccHHHHHHHHHHHHhCCCCCC-ccCHHHHHHHHH-cCCCCCCCCcccCHHHHHHHHHHhc-CcccCc----
Confidence            76544332              88999998 655555555554 2224567788999999999999998 579999    


Q ss_pred             CChhhhhcCCCC
Q psy3184         147 GGIVDIKKHKWF  158 (185)
Q Consensus       147 ~~~~~ll~hp~f  158 (185)
                       ++.+++.|||.
T Consensus       254 -~~~~~~~~~~~  264 (264)
T cd06653         254 -TAEFLLRHPFV  264 (264)
T ss_pred             -cHHHHhcCCCC
Confidence             55999999983

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.61  E-value=9.7e-15  Score=115.39  Aligned_cols=132  Identities=17%  Similarity=0.248  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc-
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV-   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~-   84 (185)
                      +.|++.||.|||++     +++|+||+++.+.   .++|+|||.+.............|+..|+|   |    |++... 
T Consensus       105 ~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~---~~~l~d~~~~~~~~~~~~~~~~~~~~~~~a---P----E~~~~~~  174 (283)
T cd07830         105 IYQILQGLAHIHKHGFFHRDLKPENLLVSGPE---VVKIADFGLAREIRSRPPYTDYVSTRWYRA---P----EILLRST  174 (283)
T ss_pred             HHHHHHHHHHHHHCCcccCCCChhhEEEcCCC---CEEEeecccceeccCCCCcCCCCCcccccC---c----eeeecCc
Confidence            67999999999998     7899999999853   399999999987755444445678999999   9    765322 


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCc----------------cCCC-----------CCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK----------------IPFP-----------KHVT  123 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~----------------~~~p-----------~~~s  123 (185)
                      .++.              ++|.+||. ..+..+....+.......                ..+|           ...+
T Consensus       175 ~~~~~~Di~s~G~~l~el~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (283)
T cd07830         175 SYSSPVDIWALGCIMAELYTLRPLFP-GSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNAS  253 (283)
T ss_pred             CcCCccchhhHHHHHHHHHhCCCccC-CCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcccCC
Confidence            1221              88999998 655544443332100000                0000           1236


Q ss_pred             HHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         124 RTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       124 ~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      .++.++|++||..||.+||     ++++++.||||
T Consensus       254 ~~~~~li~~cl~~~p~~Rp-----t~~ei~~~~~~  283 (283)
T cd07830         254 PEAIDLIKDMLRWDPKKRP-----TASQALQHPYF  283 (283)
T ss_pred             HHHHHHHHHhcccCcccCC-----CHHHHhhCCCC
Confidence            8899999999999999999     66999999997

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG0671|consensus

Probab=99.61  E-value=4.3e-15  Score=119.85  Aligned_cols=136  Identities=15%  Similarity=0.252  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccC-----------------CCCCeeEEcccCceeEeecCcccccccCCccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEG-----------------EAGNDLFVSAEGEFQVIKDGKILRLLSGRPPF   68 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~-----------------~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y   68 (185)
                      +.|++.++.+||++     ||||+||++.+.                 .+...|+++|||.+.....  .-.+++.|..|
T Consensus       198 ~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e--~hs~iVsTRHY  275 (415)
T KOG0671|consen  198 GYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHE--HHSTIVSTRHY  275 (415)
T ss_pred             HHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceecc--Ccceeeecccc
Confidence            67999999999998     899999997532                 1123478888888764433  23567889999


Q ss_pred             cccCCCcccccchhccCcce--------------eccCCCCCCCCChHH--HHHHHHhcCC----------------Ccc
Q psy3184          69 CVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQ--TYNMIINVGI----------------DKI  116 (185)
Q Consensus        69 ~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~--~~~~i~~~~~----------------~~~  116 (185)
                      .|   |    |++.+-+++.              .+|..-|+..+|.+.  +.+.|. +..                ..+
T Consensus       276 RA---P----EViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerIl-Gp~P~~mi~r~~~~Kyf~~~rl  347 (415)
T KOG0671|consen  276 RA---P----EVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERIL-GPIPSRMIKKTRKEKYFRRGRL  347 (415)
T ss_pred             CC---c----hheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHhh-CCCcHHHhhhhhhHhhhhcccc
Confidence            99   9    8888777775              788888984444332  333343 110                022


Q ss_pred             CCCCC-------------------------CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         117 PFPKH-------------------------VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       117 ~~p~~-------------------------~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      .+|+.                         -..++.|||++||..||.+|+     ++.|++.||||+..
T Consensus       348 dw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~Ri-----Tl~EAL~HpFF~~~  412 (415)
T KOG0671|consen  348 DWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRI-----TLREALSHPFFARL  412 (415)
T ss_pred             cCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccc-----cHHHHhcCHHhhcC
Confidence            22311                         124678999999999999999     55999999999753

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.60  E-value=3.5e-15  Score=119.92  Aligned_cols=137  Identities=12%  Similarity=0.191  Sum_probs=94.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--------ccccccCCccccccCCCcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--------ILRLLSGRPPFCVMNDPMQ   76 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--------~~~~~~gt~~y~a~~~P~~   76 (185)
                      .+.|++.||+|||++     ||+|+||+++.+.   .++++|||.+.......        ......++..|+|   |  
T Consensus       106 ~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~---~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a---P--  177 (314)
T cd08216         106 ILKDVLNALDYIHSKGFIHRSVKASHILLSGDG---KVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLS---P--  177 (314)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCcceEEEecCC---ceEEecCccceeeccccccccccccccccccccccccC---H--
Confidence            467999999999997     7999999998753   38999999886553211        1234467788999   9  


Q ss_pred             cccchhc--cCcce--------------eccCCCCCCCCChHHHHHHHHhcCC---------------------------
Q psy3184          77 TYNMIIN--VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI---------------------------  113 (185)
Q Consensus        77 ~~E~~~~--~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~---------------------------  113 (185)
                        |++..  ..|+.              ++|..||....+.......+. +..                           
T Consensus       178 --E~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (314)
T cd08216         178 --EVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVR-GTVPCLLDKSTYPLYEDSMSQSRSSNEHPN  254 (314)
T ss_pred             --HHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHh-ccCccccccCchhhhcCCcCcccccccccc
Confidence              77654  23332              789999983333333333322 100                           


Q ss_pred             ----CccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCC
Q psy3184         114 ----DKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       114 ----~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~  162 (185)
                          .....+..++.++.+|+.+||..||++||     ++++++.||||+.+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp-----t~~~ll~~p~~~~~~  302 (314)
T cd08216         255 NRDSVDHPYTRTFSEHFHQFVELCLQRDPESRP-----SASQLLNHSFFKQCK  302 (314)
T ss_pred             hhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCc-----CHHHHhcCchHhhhc
Confidence                00011123467899999999999999999     669999999998653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.60  E-value=5.7e-15  Score=120.07  Aligned_cols=136  Identities=17%  Similarity=0.291  Sum_probs=96.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc-----cccccCCccccccCCCccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI-----LRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~-----~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .+.||+.||.|||++     ++||+||+++.+.   .++|+|||.+........     .....|+..|+|   |    |
T Consensus       112 i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~---P----E  181 (334)
T cd07855         112 FLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDC---ELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRA---P----E  181 (334)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCC---cEEecccccceeecccCcCCCcccccccccccccC---h----H
Confidence            467999999999998     7899999998853   399999999876644221     224578999999   9    7


Q ss_pred             chhc-cCcce--------------eccCCCCCCCCChHHHHHHHHhc-C----------------------CCccCCC--
Q psy3184          80 MIIN-VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-G----------------------IDKIPFP--  119 (185)
Q Consensus        80 ~~~~-~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~----------------------~~~~~~p--  119 (185)
                      ++.. ..++.              ++|..||. +.+.......+... |                      ......+  
T Consensus       182 ~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (334)
T cd07855         182 LLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFP-GKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWS  260 (334)
T ss_pred             HhcCCcccccccchHHHHHHHHHHHcCCCccC-CCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHH
Confidence            6643 22322              78999997 65543332222100 0                      0011111  


Q ss_pred             ---CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         120 ---KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       120 ---~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                         ...+.+++++|++||..+|.+||     ++.+++.||||.+.
T Consensus       261 ~~~~~~~~~~~~li~~~l~~~P~~Rp-----t~~~~l~~~~~~~~  300 (334)
T cd07855         261 KIFPKASPEALDLLSQMLQFDPEERI-----TVEQALQHPFLAQY  300 (334)
T ss_pred             HHcccCCHHHHHHHHHHccCChhhCc-----CHHHHHhChhhhhc
Confidence               34689999999999999999999     56999999999754

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.60  E-value=4.7e-15  Score=120.21  Aligned_cols=136  Identities=15%  Similarity=0.233  Sum_probs=92.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCc-------ccccccCCccccccCCCcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGK-------ILRLLSGRPPFCVMNDPMQ   76 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~-------~~~~~~gt~~y~a~~~P~~   76 (185)
                      .+.|++.||.|||++     ||||+||+++.+.   .+++.|++.+.... .+.       ......++..|+|   |  
T Consensus       106 i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a---P--  177 (327)
T cd08227         106 ILQGVLKALDYIHHMGYVHRSVKASHILISVDG---KVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLS---P--  177 (327)
T ss_pred             HHHHHHHHHHHHHHCCEecCCCChhhEEEecCC---cEEEcccchhhccccccccccccccccccccceecccC---h--
Confidence            367999999999998     7999999998753   38888987643321 111       1122356778999   9  


Q ss_pred             cccchhc--cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCc-------------------------
Q psy3184          77 TYNMIIN--VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK-------------------------  115 (185)
Q Consensus        77 ~~E~~~~--~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~-------------------------  115 (185)
                        |++..  ..|+.              ++|..||. ............ .+..+                         
T Consensus       178 --E~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (327)
T cd08227         178 --EVLQQNLQGYDAKSDIYSVGITACELANGHVPFK-DMPATQMLLEKL-NGTVPCLLDTTTIPAEELTMKPSRSGANSG  253 (327)
T ss_pred             --HHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCC-CcchhHHHHHHh-cCCccccccccchhhhhcccCCcccCCcCC
Confidence              87754  23443              88999997 544333322222 11000                         


Q ss_pred             -------------------cCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCC
Q psy3184         116 -------------------IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       116 -------------------~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~  162 (185)
                                         ..+...+++++.+||.+||..||.+||     +++++++||||+.+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rp-----t~~ell~~p~f~~~~  314 (327)
T cd08227         254 LGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARP-----SASTLLNHSFFKQIK  314 (327)
T ss_pred             CCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcC-----CHHHHhcChhhhhcc
Confidence                               001123578999999999999999999     669999999998653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.60  E-value=8.8e-15  Score=114.40  Aligned_cols=122  Identities=14%  Similarity=0.130  Sum_probs=94.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc----cccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI----LRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~----~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.|++.|++|||++     |+||.||+++.+.   .++|+|||.+........    .....++..|+|   |    |+
T Consensus       100 i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  169 (257)
T cd05116         100 LVHQVSMGMKYLEETNFVHRDLAARNVLLVTQH---YAKISDFGLSKALGADENYYKAKTHGKWPVKWYA---P----EC  169 (257)
T ss_pred             HHHHHHHHHHHHHHCCEeecccchhhEEEcCCC---eEEECCCccccccCCCCCeeeecCCCCCCccccC---H----hH
Confidence            367999999999998     7899999998853   489999999876644321    122234578999   9    87


Q ss_pred             hhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          81 IINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        81 ~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      +....++.              ++ |..||. +.+..++...+. .+ ..+..|..++.++.++|.+|+..||++||++
T Consensus       170 ~~~~~~~~~~Di~slG~~l~el~t~g~~p~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~  245 (257)
T cd05116         170 MNYYKFSSKSDVWSFGVLMWEAFSYGQKPYK-GMKGNEVTQMIE-SG-ERMECPQRCPPEMYDLMKLCWTYGVDERPGF  245 (257)
T ss_pred             hccCCcCchhHHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-CC-CCCCCCCCCCHHHHHHHHHHhccCchhCcCH
Confidence            75544443              54 899998 777777877777 33 3567788899999999999999999999955

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>KOG1151|consensus

Probab=99.59  E-value=6.6e-15  Score=121.33  Aligned_cols=137  Identities=16%  Similarity=0.320  Sum_probs=105.9

Q ss_pred             cHHHHHHHHHHHhhc-------CCCCCceEEccCCCCCeeEEcccCceeEeecC--------cccccccCCccccccCCC
Q psy3184          10 DTLQVKEMVESMHQA-------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--------KILRLLSGRPPFCVMNDP   74 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--------~~~~~~~gt~~y~a~~~P   74 (185)
                      .--||+.||.||-..       ||||.|||+..+.....|+++|||++++++..        ..+....||.+|++   |
T Consensus       573 IiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLP---P  649 (775)
T KOG1151|consen  573 IIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLP---P  649 (775)
T ss_pred             HHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecC---c
Confidence            356899999999876       89999999987655456999999999988653        23455789999999   9


Q ss_pred             cccccchhccC----cce--------------eccCCCCCCCCChHHHH--HHHHhcCCCccCCC--CCCCHHHHHHHHH
Q psy3184          75 MQTYNMIINVG----IDN--------------IFSRPPFCVMNDPMQTY--NMIINVGIDKIPFP--KHVTRTAQSLIKA  132 (185)
Q Consensus        75 ~~~~E~~~~~~----~~~--------------l~g~~Pf~~~~~~~~~~--~~i~~~~~~~~~~p--~~~s~~~~~li~~  132 (185)
                          |++....    .+.              ++|+-||.......+++  +.|++  ...+.||  +.+|.++++||++
T Consensus       650 ----EcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqeNTIlk--AtEVqFP~KPvVsseAkaFIRR  723 (775)
T KOG1151|consen  650 ----ECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILK--ATEVQFPPKPVVSSEAKAFIRR  723 (775)
T ss_pred             ----ceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhhhchhc--ceeccCCCCCccCHHHHHHHHH
Confidence                9876431    111              99999997233334443  34442  3567777  4699999999999


Q ss_pred             HhhcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         133 LCKESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       133 ~l~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                      ||...-++|.     .+.+|..||||..
T Consensus       724 CLaYRKeDR~-----DV~qLA~dpyllP  746 (775)
T KOG1151|consen  724 CLAYRKEDRI-----DVQQLACDPYLLP  746 (775)
T ss_pred             HHHhhhhhhh-----hHHHHccCccccc
Confidence            9999999999     7799999999976

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.59  E-value=1.1e-14  Score=117.07  Aligned_cols=131  Identities=16%  Similarity=0.219  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc--
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN--   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~--   83 (185)
                      +.|++.|+.|||+.     +|+|.||+++.+.   .++++|||.+......   ....|++.|+|   |    |.+..  
T Consensus       121 ~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~---~~kl~dfg~~~~~~~~---~~~~~~~~y~a---P----E~~~~~~  187 (308)
T cd06634         121 THGALQGLAYLHSHNMIHRDVKAGNILLSEPG---LVKLGDFGSASIMAPA---NXFVGTPYWMA---P----EVILAMD  187 (308)
T ss_pred             HHHHHHHHHHHHhCCcccCCCCHHhEEECCCC---cEEECCcccceeecCc---ccccCCccccC---H----HHHhhcc
Confidence            57899999999997     7999999998753   3999999998765432   34578899999   9    76531  


Q ss_pred             -cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          84 -VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                       ..++.              ++|..||. ..+.......+. .+..+...+..++..+.+||++||..+|.+||     +
T Consensus       188 ~~~~~~~~Di~slG~il~el~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp-----~  260 (308)
T cd06634         188 EGQYDGKVDVWSLGITCIELAERKPPLF-NMNAMSALYHIA-QNESPALQSGHWSEYFRNFVDSCLQKIPQDRP-----T  260 (308)
T ss_pred             cCCCCcccchHHHHHHHHHHHcCCCCCc-cccHHHHHHHHh-hcCCCCcCcccccHHHHHHHHHHhhCCcccCC-----C
Confidence             12221              88999998 655555544554 22122222346889999999999999999999     5


Q ss_pred             hhhhhcCCCCCCC
Q psy3184         149 IVDIKKHKWFQGF  161 (185)
Q Consensus       149 ~~~ll~hp~f~~~  161 (185)
                      +++++.|||+...
T Consensus       261 ~~~ll~~~~~~~~  273 (308)
T cd06634         261 SEVLLKHRFVLRE  273 (308)
T ss_pred             HHHHhhCcccccc
Confidence            5999999999653

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.59  E-value=8.2e-15  Score=115.91  Aligned_cols=133  Identities=15%  Similarity=0.166  Sum_probs=94.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.||+|||++     +++|+||+++.+  + .++|+|||.+....... ......+++.|+|   |    |++.+
T Consensus       104 ~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~--~-~~~l~df~~~~~~~~~~~~~~~~~~~~~~~a---P----E~~~~  173 (283)
T cd07835         104 YLYQLLQGIAYCHSHRVLHRDLKPQNLLIDRE--G-ALKLADFGLARAFGVPVRTYTHEVVTLWYRA---P----EILLG  173 (283)
T ss_pred             HHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCC--C-cEEEeecccccccCCCccccCccccccCCCC---C----ceeec
Confidence            367899999999998     789999999884  3 49999999987554322 2223456889999   9    76543


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCC--------------------------CccCCCCCC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI--------------------------DKIPFPKHV  122 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~--------------------------~~~~~p~~~  122 (185)
                      . .++.              ++|.+||. +.+.......+.....                          ........+
T Consensus       174 ~~~~~~~~Di~slG~~l~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (283)
T cd07835         174 SRQYSTPVDIWSIGCIFAEMVNRRPLFP-GDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNL  252 (283)
T ss_pred             CcccCcHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCC
Confidence            2 2332              88999998 6555443333221000                          000112457


Q ss_pred             CHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       123 s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      +.++.++|.+||..||.+||     ++++++.||||
T Consensus       253 ~~~~~~li~~~l~~~P~~Rp-----t~~~il~~~~~  283 (283)
T cd07835         253 DEDGLDLLSKMLVYDPAKRI-----SAKAALQHPYF  283 (283)
T ss_pred             CHHHHHHHHHHhcCChhhCc-----CHHHHhcCCCC
Confidence            89999999999999999999     56999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.59  E-value=9.4e-15  Score=114.84  Aligned_cols=126  Identities=13%  Similarity=0.189  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.||+.||+|||++     |+||+||+++.+.   .++++|||.++....+..   .....+++.|++   |    |...
T Consensus       118 ~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~---p----e~~~  187 (272)
T cd05075         118 MTDIASGMEYLSSKSFIHRDLAARNCMLNENM---NVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIA---I----ESLA  187 (272)
T ss_pred             HHHHHHHHHHHHHCCeeccccchhheEEcCCC---CEEECCCCcccccCcccceecCCcccCCcccCC---H----HHcc
Confidence            67999999999998     7899999998753   389999999886644321   123346678999   9    7766


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. +.+..+....+. .+ .....+..++..+.++|.+||..||++||     
T Consensus       188 ~~~~~~~~Di~slG~il~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----  259 (272)
T cd05075         188 DRVYTTKSDVWSFGVTMWEIATRGQTPYP-GVENSEIYDYLR-QG-NRLKQPPDCLDGLYSLMSSCWLLNPKDRP-----  259 (272)
T ss_pred             CCCcChHHHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHcCCCcccCc-----
Confidence            554443              45 899998 777777777776 33 34456677899999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++.+++.
T Consensus       260 s~~~l~~  266 (272)
T cd05075         260 SFETLRC  266 (272)
T ss_pred             CHHHHHH
Confidence            5587764

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.59  E-value=5.8e-15  Score=116.73  Aligned_cols=133  Identities=19%  Similarity=0.224  Sum_probs=96.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...||+.||+|||+.     +++|+||+++++.   .++++|||.+...... .......+++.|++   |    |++.+
T Consensus       105 ~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~---~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~~  174 (284)
T cd07836         105 FTYQLLKGIAFCHENRVLHRDLKPQNLLINKRG---ELKLADFGLARAFGIPVNTFSNEVVTLWYRA---P----DVLLG  174 (284)
T ss_pred             HHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCC---cEEEeecchhhhhcCCccccccccccccccC---h----HHhcC
Confidence            367999999999998     7899999998753   3999999988755332 22234567889999   9    76644


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCC---------------ccCC-----------CCCC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID---------------KIPF-----------PKHV  122 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~---------------~~~~-----------p~~~  122 (185)
                      . .++.              ++|..||. +.+..+....+......               ...+           ...+
T Consensus       175 ~~~~~~~~Dv~slG~~l~~l~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (284)
T cd07836         175 SRTYSTSIDIWSVGCIMAEMITGRPLFP-GTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHA  253 (284)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhhhc
Confidence            2 2222              88999998 66665555444311000               0011           1246


Q ss_pred             CHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       123 s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      +.++++++.+|+..||.+||     ++.+++.||||
T Consensus       254 ~~~~~~~i~~~l~~~p~~R~-----~~~~~l~~~~f  284 (284)
T cd07836         254 DPLGIDLLHRLLQLNPELRI-----SAHDALQHPWF  284 (284)
T ss_pred             CcHHHHHHHHHhcCCcccCC-----CHHHHhcCCCC
Confidence            88999999999999999999     55999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.59  E-value=9.6e-15  Score=115.48  Aligned_cols=131  Identities=11%  Similarity=0.104  Sum_probs=98.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.|++|||++     ||+|+||+++.+.....++++|||.++.+.....   .....++..|+|   |    |++
T Consensus       121 ~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  193 (277)
T cd05036         121 CARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMP---P----EAF  193 (277)
T ss_pred             HHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCC---H----HHH
Confidence            467999999999998     8999999998653333489999999886632211   112233567999   9    877


Q ss_pred             hccCcce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              + .|..||. +.+.......+..  ......|..++.++.+++.+||..+|++||    
T Consensus       194 ~~~~~~~~~DiwslG~il~el~~~g~~pf~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp----  266 (277)
T cd05036         194 LDGIFTSKTDVWSFGVLLWEIFSLGYMPYP-GRTNQEVMEFVTG--GGRLDPPKGCPGPVYRIMTDCWQHTPEDRP----  266 (277)
T ss_pred             hcCCcCchhHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHHc--CCcCCCCCCCCHHHHHHHHHHcCCCcccCc----
Confidence            6554443              4 4999998 7777777666652  235667788999999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.++++|
T Consensus       267 -s~~~vl~~  274 (277)
T cd05036         267 -NFATILER  274 (277)
T ss_pred             -CHHHHHHH
Confidence             55888875

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.59  E-value=1.1e-14  Score=118.32  Aligned_cols=136  Identities=15%  Similarity=0.164  Sum_probs=97.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---------------cccccccCCcccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---------------KILRLLSGRPPFC   69 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---------------~~~~~~~gt~~y~   69 (185)
                      .+.|++.||+|||+.     ||+|+||+++.+.   .++++|||.+......               .......+++.|+
T Consensus       124 ~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  200 (335)
T PTZ00024        124 ILLQILNGLNVLHKWYFMHRDLSPANIFINSKG---ICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYR  200 (335)
T ss_pred             HHHHHHHHHHHHHhCCeecccccHHHeEECCCC---CEEECCccceeecccccccccccccccccccccccccccccCCC
Confidence            478999999999998     7899999998753   4899999998766521               1122345688899


Q ss_pred             ccCCCcccccchhccC-cce--------------eccCCCCCCCCChHHHHHHHHhcCC--CccCC--------------
Q psy3184          70 VMNDPMQTYNMIINVG-IDN--------------IFSRPPFCVMNDPMQTYNMIINVGI--DKIPF--------------  118 (185)
Q Consensus        70 a~~~P~~~~E~~~~~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~--~~~~~--------------  118 (185)
                      |   |    |++.+.. ++.              ++|.+||. +.+.......+.....  ....+              
T Consensus       201 a---P----E~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (335)
T PTZ00024        201 A---P----ELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFP-GENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTP  272 (335)
T ss_pred             C---C----hhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCchhhCcchhhcccccccCc
Confidence            9   9    7665422 222              88999998 7766555544431000  00001              


Q ss_pred             ---------CCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         119 ---------PKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       119 ---------p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                               ....+.++.++|.+||..+|.+||     ++++++.||||+..
T Consensus       273 ~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~-----s~~~~l~~~~~~~~  319 (335)
T PTZ00024        273 RKPKDLKTIFPNASDDAIDLLQSLLKLNPLERI-----SAKEALKHEYFKSD  319 (335)
T ss_pred             CCcccHHHhCcCCChHHHHHHHHHcCCCchhcc-----CHHHHhcCcccCCC
Confidence                     123588999999999999999999     66999999999854

>KOG4721|consensus

Probab=99.59  E-value=6.9e-16  Score=130.11  Aligned_cols=129  Identities=16%  Similarity=0.187  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhccC
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVG   85 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~~   85 (185)
                      ..+|+.|++|||.+     |||.-||||..+.   .|||+|||-++......+..+|+||..|||   |    |+|...+
T Consensus       218 sk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d---~VKIsDFGTS~e~~~~STkMSFaGTVaWMA---P----EvIrneP  287 (904)
T KOG4721|consen  218 SKGIAGGMNYLHLHKIIHRDLKSPNILISYDD---VVKISDFGTSKELSDKSTKMSFAGTVAWMA---P----EVIRNEP  287 (904)
T ss_pred             HHHhhhhhHHHHHhhHhhhccCCCceEeeccc---eEEeccccchHhhhhhhhhhhhhhhHhhhC---H----HHhhcCC
Confidence            36899999999987     9999999999865   399999999998776677789999999999   9    9998765


Q ss_pred             cce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhh
Q psy3184          86 IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD  151 (185)
Q Consensus        86 ~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~  151 (185)
                      .+-              ++|..||. ..+...++..+- +..-.+..|..+++.++-||++||...|..||     ++.+
T Consensus       288 csEKVDIwSfGVVLWEmLT~EiPYk-dVdssAIIwGVG-sNsL~LpvPstcP~GfklL~Kqcw~sKpRNRP-----SFrq  360 (904)
T KOG4721|consen  288 CSEKVDIWSFGVVLWEMLTGEIPYK-DVDSSAIIWGVG-SNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRP-----SFRQ  360 (904)
T ss_pred             cccccceehhHHHHHHHHhcCCCcc-ccchheeEEecc-CCcccccCcccCchHHHHHHHHHHhcCCCCCc-----cHHH
Confidence            332              99999998 666666554443 22246677889999999999999999999999     5588


Q ss_pred             hhcCC
Q psy3184         152 IKKHK  156 (185)
Q Consensus       152 ll~hp  156 (185)
                      ++.|=
T Consensus       361 il~Hl  365 (904)
T KOG4721|consen  361 ILLHL  365 (904)
T ss_pred             HHHHH
Confidence            88874

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.58  E-value=9.7e-15  Score=115.85  Aligned_cols=133  Identities=14%  Similarity=0.175  Sum_probs=97.2

Q ss_pred             ccHHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.|++.||.|||+.      +++|+||+++.+.   .++++|||++..... ......+|+..|+|   |    |++.
T Consensus       107 ~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~---~~~l~d~gl~~~~~~-~~~~~~~~~~~~~a---P----E~~~  175 (284)
T cd06620         107 KIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRG---QIKLCDFGVSGELIN-SIADTFVGTSTYMS---P----ERIQ  175 (284)
T ss_pred             HHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCC---cEEEccCCcccchhh-hccCccccCcccCC---H----HHHc
Confidence            3478999999999963      7999999998753   389999998865422 22335689999999   9    7765


Q ss_pred             ccCcce--------------eccCCCCCCCCCh-----------HHHHHHHHhcCCCccCCCCC-CCHHHHHHHHHHhhc
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDP-----------MQTYNMIINVGIDKIPFPKH-VTRTAQSLIKALCKE  136 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~-----------~~~~~~i~~~~~~~~~~p~~-~s~~~~~li~~~l~~  136 (185)
                      ...++.              ++|..||. ..+.           .+....+..  .....++.. ++.++.+|+.+|+..
T Consensus       176 ~~~~~~~~Di~slG~~l~~l~tg~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~  252 (284)
T cd06620         176 GGKYTVKSDVWSLGISIIELALGKFPFA-FSNIDDDGQDDPMGILDLLQQIVQ--EPPPRLPSSDFPEDLRDFVDACLLK  252 (284)
T ss_pred             cCCCCccchHHHHHHHHHHHHhCCCCCc-ccchhhhhhhhhhHHHHHHHHHhh--ccCCCCCchhcCHHHHHHHHHHhcC
Confidence            444432              78999997 4433           123333431  123334433 788999999999999


Q ss_pred             CcCcccCCCCCChhhhhcCCCCCC
Q psy3184         137 SPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       137 dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                      ||.+||     ++.++++|+||..
T Consensus       253 dp~~Rp-----t~~e~~~~~~~~~  271 (284)
T cd06620         253 DPTERP-----TPQQLCAMPPFIQ  271 (284)
T ss_pred             CcccCc-----CHHHHhcCccccc
Confidence            999999     5699999999854

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.58  E-value=6.5e-15  Score=118.13  Aligned_cols=136  Identities=15%  Similarity=0.218  Sum_probs=92.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCC-CCeeEEcccCceeEeecCc----ccccccCCccccccCCCccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEA-GNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~-~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .+.||+.||.|||+.     ||+|+||+++.+.. ...++++|||++.......    .....++++.|+|   |    |
T Consensus       113 i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E  185 (316)
T cd07842         113 LLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRA---P----E  185 (316)
T ss_pred             HHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccC---H----H
Confidence            467999999999998     79999999987111 1249999999987654322    1234578899999   9    7


Q ss_pred             chhcc-Ccce--------------eccCCCCCCCCChHH---------HHHHHHhc-----------------------C
Q psy3184          80 MIINV-GIDN--------------IFSRPPFCVMNDPMQ---------TYNMIINV-----------------------G  112 (185)
Q Consensus        80 ~~~~~-~~~~--------------l~g~~Pf~~~~~~~~---------~~~~i~~~-----------------------~  112 (185)
                      ++.+. .++.              ++|.+||. +.+...         ....+...                       .
T Consensus       186 ~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  264 (316)
T cd07842         186 LLLGARHYTKAIDIWAIGCIFAELLTLEPIFK-GREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKD  264 (316)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCc-CCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhhhh
Confidence            66542 2332              78999997 443221         11111000                       0


Q ss_pred             CCccCCC-----------CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         113 IDKIPFP-----------KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       113 ~~~~~~p-----------~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      .....++           ...+.++.+++.+||..||.+||     ++.+++.||||
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp-----s~~eil~~~~f  316 (316)
T cd07842         265 FKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRI-----TAEEALEHPYF  316 (316)
T ss_pred             ccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCc-----CHHHHhcCCCC
Confidence            0011111           15678999999999999999999     66999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.58  E-value=1.2e-14  Score=116.26  Aligned_cols=133  Identities=18%  Similarity=0.236  Sum_probs=94.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc------------ccccccCCccccccC
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK------------ILRLLSGRPPFCVMN   72 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~------------~~~~~~gt~~y~a~~   72 (185)
                      ...||+.||.|||+.     +++|+||+++++.   .++++|||.+.......            ......|++.|+|  
T Consensus       120 i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a--  194 (311)
T cd07866         120 YMLQLLEGINYLHENHILHRDIKAANILIDNQG---ILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRP--  194 (311)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEECCCC---CEEECcCccchhccCCCcccccCCcccccccccceeccCcCC--
Confidence            467999999999998     7899999999853   38999999887553321            1123467888999  


Q ss_pred             CCcccccchhcc-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCC--c------------------cC
Q psy3184          73 DPMQTYNMIINV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID--K------------------IP  117 (185)
Q Consensus        73 ~P~~~~E~~~~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~--~------------------~~  117 (185)
                       |    |++.+. .++.              ++|.+||. +.+.......+......  .                  ..
T Consensus       195 -P----E~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (311)
T cd07866         195 -P----ELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQ-GKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTN  268 (311)
T ss_pred             -h----HHhhCCCccCchhHhHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCChhhchhhhhcccccccccCCC
Confidence             9    765432 2322              88999998 77666555544311000  0                  00


Q ss_pred             CC-------CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         118 FP-------KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       118 ~p-------~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      .|       ..++.++.+||.+||..||.+||     ++.+++.||||
T Consensus       269 ~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~-----t~~ell~~~~f  311 (311)
T cd07866         269 YPRTLEERFGKLGPEGLDLLSKLLSLDPYKRL-----TASDALEHPYF  311 (311)
T ss_pred             CCccHHHHcccCChhHHHHHHHHcccCcccCc-----CHHHHhcCCCC
Confidence            01       23557899999999999999999     56999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.58  E-value=1.2e-14  Score=115.01  Aligned_cols=133  Identities=13%  Similarity=0.180  Sum_probs=95.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.|+.|||+.     +++|+||+++.+.   .++++|||++..+.... ......++..|+|   |    |++.+
T Consensus       105 ~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  174 (286)
T cd07846         105 YLFQILRGIEFCHSHNIIHRDIKPENILVSQSG---VVKLCDFGFARTLAAPGEVYTDYVATRWYRA---P----ELLVG  174 (286)
T ss_pred             HHHHHHHHHHHHHHCCccccCCCHHHEEECCCC---cEEEEeeeeeeeccCCccccCcccceeeccC---c----HHhcc
Confidence            367999999999998     6899999998853   48999999988664432 2334678899999   9    76653


Q ss_pred             cC-cce--------------eccCCCCCCCCChHHHHHHHHhcCC----------------CccCC------------CC
Q psy3184          84 VG-IDN--------------IFSRPPFCVMNDPMQTYNMIINVGI----------------DKIPF------------PK  120 (185)
Q Consensus        84 ~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~----------------~~~~~------------p~  120 (185)
                      .. ++.              ++|.+||. +.+..+....+.....                .....            +.
T Consensus       175 ~~~~~~~~Dv~slG~~l~el~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (286)
T cd07846         175 DTKYGRAVDIWAVGCLVTEMLTGEPLFP-GDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFP  253 (286)
T ss_pred             ccccCchHhHHHHHHHHHHHHcCCCCCC-CCchHHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCC
Confidence            21 221              88999997 5554433333220000                00011            13


Q ss_pred             CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       121 ~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      .++..+.+|+.+||..+|.+||     ++.+++.||||
T Consensus       254 ~~~~~~~~li~~~l~~~P~~Rp-----~~~~il~~~~~  286 (286)
T cd07846         254 KLSGLVLDLAKQCLRIDPDDRP-----SSSQLLHHEFF  286 (286)
T ss_pred             CcCHHHHHHHHHHhcCCcccch-----hHHHHhcCCCC
Confidence            5689999999999999999999     55999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.58  E-value=1.2e-14  Score=118.23  Aligned_cols=136  Identities=15%  Similarity=0.238  Sum_probs=97.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc------ccccccCCccccccCCCcccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK------ILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~------~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      .+.||+.||.|||+.     +++|+||+++.+.   .++|+|||.+.......      ....+.|++.|+|   |    
T Consensus       112 i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~---~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~a---P----  181 (337)
T cd07852         112 IMYQLLKALKYIHSGNVIHRDLKPSNILLNSDC---RVKLADFGLARSLSELEENPENPVLTDYVATRWYRA---P----  181 (337)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCC---cEEEeeccchhccccccccccCcchhcccccccccC---c----
Confidence            578999999999997     7899999998853   49999999987664322      2334678999999   9    


Q ss_pred             cchhcc-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCC-------------------------Ccc--
Q psy3184          79 NMIINV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI-------------------------DKI--  116 (185)
Q Consensus        79 E~~~~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~-------------------------~~~--  116 (185)
                      |.+... .++.              ++|..||. +.........+.....                         ...  
T Consensus       182 E~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (337)
T cd07852         182 EILLGSTRYTKGVDMWSVGCILGEMLLGKPLFP-GTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPL  260 (337)
T ss_pred             eeeeccccccccchHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccch
Confidence            755432 1221              88999997 5554433333221000                         000  


Q ss_pred             -CCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         117 -PFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       117 -~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                       .....++.++.++|.+||..||.+||     ++.++++||||+..
T Consensus       261 ~~~~~~~~~~l~~li~~~l~~~P~~Rp-----s~~~il~~~~~~~~  301 (337)
T cd07852         261 DELLPKASDDALDLLKKLLVFNPNKRL-----TAEEALEHPYVAQF  301 (337)
T ss_pred             hhhccCCCHHHHHHHHHhccCCccccc-----CHHHHhhChhhhhh
Confidence             01123789999999999999999999     56999999999765

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.58  E-value=1.5e-14  Score=114.58  Aligned_cols=126  Identities=17%  Similarity=0.224  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.|++.||+|+|++     |+||.||++..+.   .++|+|||+++......   ......+++.|+|   |    |.+.
T Consensus       130 ~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  199 (283)
T cd05091         130 VTQIAAGMEFLSSHHVVHKDLATRNVLVFDKL---NVKISDLGLFREVYAADYYKLMGNSLLPIRWMS---P----EAIM  199 (283)
T ss_pred             HHHHHHHHHHHHHcCccccccchhheEecCCC---ceEecccccccccccchheeeccCccCCccccC---H----HHHh
Confidence            56999999999997     7899999998753   38999999987653322   1223456788999   9    7765


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. +.+..+....+.+ + ....+|..++.++.+|+.+|+..+|.+||     
T Consensus       200 ~~~~~~~~Dv~slG~~l~el~~~g~~p~~-~~~~~~~~~~i~~-~-~~~~~~~~~~~~~~~li~~cl~~~p~~RP-----  271 (283)
T cd05091         200 YGKFSIDSDIWSYGVVLWEVFSYGLQPYC-GYSNQDVIEMIRN-R-QVLPCPDDCPAWVYTLMLECWNEFPSRRP-----  271 (283)
T ss_pred             cCCCCcchhHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHHc-C-CcCCCCCCCCHHHHHHHHHHhCCCcccCC-----
Confidence            444433              54 889998 8787888888772 2 24456778999999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++++++.
T Consensus       272 ~~~~i~~  278 (283)
T cd05091         272 RFKDIHS  278 (283)
T ss_pred             CHHHHHH
Confidence            4588765

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.58  E-value=1.9e-14  Score=116.19  Aligned_cols=131  Identities=17%  Similarity=0.237  Sum_probs=98.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      .+.||+.|+.|||+.     +++|+||+++.+  + .++++|||.+.....   .....|++.|+|   |    |.+.. 
T Consensus       130 i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~--~-~~kl~dfg~~~~~~~---~~~~~~~~~y~a---P----E~~~~~  196 (317)
T cd06635         130 ITHGALQGLAYLHSHNMIHRDIKAGNILLTEP--G-QVKLADFGSASIASP---ANSFVGTPYWMA---P----EVILAM  196 (317)
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCcccEEECCC--C-CEEEecCCCccccCC---cccccCCccccC---h----hhhhcC
Confidence            367899999999998     789999999875  3 399999998865433   234578899999   9    66531 


Q ss_pred             --cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          84 --VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        84 --~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                        ..++.              ++|..||. ..+.......+...+ .....+..++..+++++.+||..+|.+||     
T Consensus       197 ~~~~~~~~~Dv~slGvil~el~~g~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-----  269 (317)
T cd06635         197 DEGQYDGKVDVWSLGITCIELAERKPPLF-NMNAMSALYHIAQNE-SPTLQSNEWSDYFRNFVDSCLQKIPQDRP-----  269 (317)
T ss_pred             CCCCCCccccHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHhcc-CCCCCCccccHHHHHHHHHHccCCcccCc-----
Confidence              22221              78999998 666666666655222 22223346889999999999999999999     


Q ss_pred             ChhhhhcCCCCCC
Q psy3184         148 GIVDIKKHKWFQG  160 (185)
Q Consensus       148 ~~~~ll~hp~f~~  160 (185)
                      ++.+++.|+|+..
T Consensus       270 t~~~il~~~~~~~  282 (317)
T cd06635         270 TSEELLKHMFVLR  282 (317)
T ss_pred             CHHHHHhChhhhc
Confidence            5599999999843

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.57  E-value=1.8e-14  Score=111.84  Aligned_cols=128  Identities=13%  Similarity=0.129  Sum_probs=101.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.|++.||+|||++     |++|+||+++.+.   .++++|||.+......   .......+++.|+|   |    |.+
T Consensus       110 ~~~~l~~al~~lH~~~i~H~di~p~nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  179 (262)
T cd00192         110 FAIQIAKGMEYLASKKFVHRDLAARNCLVGEDL---VVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMA---P----ESL  179 (262)
T ss_pred             HHHHHHHHHHHHHcCCcccCccCcceEEECCCC---cEEEcccccccccccccccccccCCCcCccccC---H----HHh
Confidence            478999999999997     7899999999863   4999999999876543   22334567889999   9    776


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. +.+..+....+.. + .....|..++.++.+++.+||..+|.+||    
T Consensus       180 ~~~~~~~~~Di~slG~il~~l~~~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----  252 (262)
T cd00192         180 KDGIFTSKSDVWSFGVLLWEIFTLGATPYP-GLSNEEVLEYLRK-G-YRLPKPEYCPDELYELMLSCWQLDPEDRP----  252 (262)
T ss_pred             ccCCcchhhccHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHHc-C-CCCCCCccCChHHHHHHHHHccCCcccCc----
Confidence            6544433              45 699998 7777777777772 2 35667788899999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.+++++
T Consensus       253 -s~~~l~~~  260 (262)
T cd00192         253 -TFSELVER  260 (262)
T ss_pred             -CHHHHHHh
Confidence             55888764

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.57  E-value=1.6e-14  Score=114.04  Aligned_cols=127  Identities=11%  Similarity=0.109  Sum_probs=96.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.|++.||.|||+.     |+||.||+++.+.   .++++|||.+........   .....+++.|+|   |    |.+
T Consensus       124 ~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  193 (277)
T cd05062         124 MAGEIADGMAYLNANKFVHRDLAARNCMVAEDF---TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMS---P----ESL  193 (277)
T ss_pred             HHHHHHHHHHHHHHCCcccCCcchheEEEcCCC---CEEECCCCCccccCCcceeecCCCCccCHhhcC---h----hHh
Confidence            367899999999997     7899999999853   389999999875433211   112355778999   9    877


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. +.+.......+.. + .....|..++..+.+++.+||..||.+||    
T Consensus       194 ~~~~~~~~~Di~slG~~l~el~~~~~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----  266 (277)
T cd05062         194 KDGVFTTYSDVWSFGVVLWEIATLAEQPYQ-GMSNEQVLRFVME-G-GLLDKPDNCPDMLFELMRMCWQYNPKMRP----  266 (277)
T ss_pred             hcCCcCchhHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHHc-C-CcCCCCCCCCHHHHHHHHHHcCCChhhCc----
Confidence            6554443              44 789998 7777777776662 2 24566778899999999999999999999    


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                       ++.+++.
T Consensus       267 -s~~e~l~  273 (277)
T cd05062         267 -SFLEIIS  273 (277)
T ss_pred             -CHHHHHH
Confidence             4587764

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.57  E-value=7e-15  Score=120.25  Aligned_cols=133  Identities=16%  Similarity=0.220  Sum_probs=96.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      .+.||+.||+|||+.     +++|+||+++.+.   .++++|||.+.....  ......|++.|+|   |    |.+.+ 
T Consensus       125 i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~---~~kl~dfg~~~~~~~--~~~~~~~~~~y~a---P----E~~~~~  192 (345)
T cd07877         125 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDC---ELKILDFGLARHTDD--EMTGYVATRWYRA---P----EIMLNW  192 (345)
T ss_pred             HHHHHHHHHHHHHHCCeeecCCChHHEEEcCCC---CEEEecccccccccc--cccccccCCCccC---H----HHHhCc
Confidence            468999999999998     7899999998853   399999999876533  2334678899999   9    76543 


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCC--------------------ccCCC--------CC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID--------------------KIPFP--------KH  121 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~--------------------~~~~p--------~~  121 (185)
                      ..++.              ++|..||. +.+.......+......                    ....|        ..
T Consensus       193 ~~~~~~~DvwslG~il~el~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (345)
T cd07877         193 MHYNQTVDIWSVGCIMAELLTGRTLFP-GTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIG  271 (345)
T ss_pred             cCCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCC
Confidence            22332              78999998 66554443333210000                    00111        13


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                      .++++.+||.+||..||.+|+     ++.+++.||||+.
T Consensus       272 ~~~~~~~li~~~L~~dp~~R~-----t~~e~l~h~~f~~  305 (345)
T cd07877         272 ANPLAVDLLEKMLVLDSDKRI-----TAAQALAHAYFAQ  305 (345)
T ss_pred             CCHHHHHHHHHHcCCChhhcC-----CHHHHhcChhhhh
Confidence            588999999999999999999     5699999999975

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.57  E-value=2.2e-14  Score=114.66  Aligned_cols=127  Identities=12%  Similarity=0.108  Sum_probs=94.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.||+|||+.     ||||+||+++.+.   .++|+|||++..............+..|+|   |    |++...
T Consensus       124 i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  193 (297)
T cd05089         124 FASDVATGMQYLSEKQFIHRDLAARNVLVGENL---ASKIADFGLSRGEEVYVKKTMGRLPVRWMA---I----ESLNYS  193 (297)
T ss_pred             HHHHHHHHHHHHHHCCcccCcCCcceEEECCCC---eEEECCcCCCccccceeccCCCCcCccccC---c----hhhccC
Confidence            467999999999997     7999999998753   389999998864322111112233456999   9    877655


Q ss_pred             Ccce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .++.              ++ |..||. +.+..+....+. .+ ..+..|..++.++.+|+.+||..+|.+||++     
T Consensus       194 ~~~~~~DvwSlG~il~el~t~g~~pf~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~-----  265 (297)
T cd05089         194 VYTTKSDVWSFGVLLWEIVSLGGTPYC-GMTCAELYEKLP-QG-YRMEKPRNCDDEVYELMRQCWRDRPYERPPF-----  265 (297)
T ss_pred             CCCchhhHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHh-cC-CCCCCCCCCCHHHHHHHHHHcCCChhhCcCH-----
Confidence            5443              44 999998 888888877776 22 2445667799999999999999999999954     


Q ss_pred             hhhhc
Q psy3184         150 VDIKK  154 (185)
Q Consensus       150 ~~ll~  154 (185)
                      +++++
T Consensus       266 ~~i~~  270 (297)
T cd05089         266 AQISV  270 (297)
T ss_pred             HHHHH
Confidence            77654

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.57  E-value=1.8e-14  Score=114.56  Aligned_cols=136  Identities=15%  Similarity=0.186  Sum_probs=99.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||+.     +++|+||+++.+.   .++++|||++....... .....++..|++   |    |.+...
T Consensus       110 i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~---~~~l~dfg~~~~~~~~~-~~~~~~~~~y~~---p----E~~~~~  178 (287)
T cd06621         110 IAESVLKGLSYLHSRKIIHRDIKPSNILLTRKG---QVKLCDFGVSGELVNSL-AGTFTGTSFYMA---P----ERIQGK  178 (287)
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCHHHEEEecCC---eEEEeeccccccccccc-cccccCCccccC---H----HHhcCC
Confidence            578999999999987     7899999998753   39999999987554322 234568889999   9    776655


Q ss_pred             Ccce--------------eccCCCCCCCC-----ChHHHHHHHHhcCCCccCCC------CCCCHHHHHHHHHHhhcCcC
Q psy3184          85 GIDN--------------IFSRPPFCVMN-----DPMQTYNMIINVGIDKIPFP------KHVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~-----~~~~~~~~i~~~~~~~~~~p------~~~s~~~~~li~~~l~~dp~  139 (185)
                      .++.              ++|..||. ..     ...+....+. .. .....+      ..+++++.+||.+||..+|.
T Consensus       179 ~~~~~~Dv~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  255 (287)
T cd06621         179 PYSITSDVWSLGLTLLEVAQNRFPFP-PEGEPPLGPIELLSYIV-NM-PNPELKDEPGNGIKWSEEFKDFIKQCLEKDPT  255 (287)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCC-cccCCCCChHHHHHHHh-cC-CchhhccCCCCCCchHHHHHHHHHHHcCCCcc
Confidence            4443              88999997 43     2334444444 11 112222      23578999999999999999


Q ss_pred             cccCCCCCChhhhhcCCCCCCCChh
Q psy3184         140 ERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       140 ~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                      +||     ++.+++.||||+...-+
T Consensus       256 ~Rp-----t~~eil~~~~~~~~~~~  275 (287)
T cd06621         256 RRP-----TPWDMLEHPWIKAQMKK  275 (287)
T ss_pred             cCC-----CHHHHHhCccccccccc
Confidence            999     55999999999765433

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.57  E-value=2.3e-14  Score=112.45  Aligned_cols=128  Identities=13%  Similarity=0.186  Sum_probs=97.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.|++.||.|||++     |+||+||+++.+.   .++|+|||.++.......   .....++..|+|   |    |.+
T Consensus       118 ~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~---p----e~~  187 (273)
T cd05035         118 FMVDIALGMEYLSNRNFIHRDLAARNCMLREDM---TVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIA---I----ESL  187 (273)
T ss_pred             HHHHHHHHHHHHHhCCeeccccchheEEECCCC---eEEECCccceeeccccccccccccccCCccccC---H----hhc
Confidence            368999999999997     7999999998853   489999999886643321   112345678999   9    766


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |.+||. +.+..+....+. .+ .....|..++.++.+++.+||..||.+||    
T Consensus       188 ~~~~~~~~~Dv~SlG~il~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----  260 (273)
T cd05035         188 ADRVYTSKSDVWAFGVTMWEIATRGQTPYP-GVENHEIYDYLR-HG-NRLKQPEDCLDELYDLMYSCWRADPKDRP----  260 (273)
T ss_pred             ccCCCCcccchHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCcCCCHHHHHHHHHHcCCChhhCc----
Confidence            5444433              45 899998 777777777766 33 35667788999999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.+++.+
T Consensus       261 -~~~e~~~~  268 (273)
T cd05035         261 -TFTKLREV  268 (273)
T ss_pred             -CHHHHHHH
Confidence             55777653

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.57  E-value=1.3e-14  Score=125.99  Aligned_cols=140  Identities=16%  Similarity=0.211  Sum_probs=89.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--cccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||+.     ||||+||+++.+. + .++|+|||+++.+..+  .....++|++.|||   |    |.+.
T Consensus       260 i~~qll~aL~yLH~~gIiHRDLKP~NILl~~~~-~-~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~A---P----E~~~  330 (566)
T PLN03225        260 IMRQILFALDGLHSTGIVHRDVKPQNIIFSEGS-G-SFKIIDLGAAADLRVGINYIPKEFLLDPRYAA---P----EQYI  330 (566)
T ss_pred             HHHHHHHHHHHHHHCCEEeCcCCHHHEEEeCCC-C-cEEEEeCCCccccccccccCCcccccCCCccC---h----HHhh
Confidence            477999999999997     8999999998642 2 4999999999865432  23346789999999   9    6432


Q ss_pred             ccC----------------------c----ce----------eccCCCCCCCCChHHHHHHHHhcCCC----------c-
Q psy3184          83 NVG----------------------I----DN----------IFSRPPFCVMNDPMQTYNMIINVGID----------K-  115 (185)
Q Consensus        83 ~~~----------------------~----~~----------l~g~~Pf~~~~~~~~~~~~i~~~~~~----------~-  115 (185)
                      ...                      +    +.          +++..++.  .+.......+...+..          . 
T Consensus       331 ~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~  408 (566)
T PLN03225        331 MSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSD--SNLIQFNRQLKRNDYDLVAWRKLVEPRA  408 (566)
T ss_pred             ccCCCCCCccccccccccchhccccCCCCcccHHHHHHHHHHHhCcCCCc--hHHHHHHHHHHhcCCcHHHHHHhhcccc
Confidence            111                      0    11          33332221  1111111111100000          0 


Q ss_pred             -------cCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhh
Q psy3184         116 -------IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       116 -------~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                             +......+..+.+||.+||.+||.+||     ++.++++||||++..+..
T Consensus       409 ~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~-----ta~e~L~Hpff~~~~~~~  460 (566)
T PLN03225        409 SPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQRI-----SAKAALAHPYFDREGLLG  460 (566)
T ss_pred             chhhhhhhhhccccchHHHHHHHHHccCCcccCC-----CHHHHhCCcCcCCCCccc
Confidence                   000011234566999999999999999     669999999999877753

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.56  E-value=3.2e-14  Score=112.52  Aligned_cols=127  Identities=9%  Similarity=0.079  Sum_probs=95.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccc---cccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR---LLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~---~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     ||||+||++..+.   .++|+|||+++.........   ...+++.|++   |    |.+
T Consensus       114 ~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~---~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~---P----E~~  183 (279)
T cd05109         114 WCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPN---HVKITDFGLARLLDIDETEYHADGGKVPIKWMA---L----ESI  183 (279)
T ss_pred             HHHHHHHHHHHHHHCCeeccccccceEEEcCCC---cEEECCCCceeecccccceeecCCCccchhhCC---H----HHh
Confidence            378999999999998     8899999997753   38999999998765432221   2234678999   9    877


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. ..........+. .+ .....+..++.++.+++.+||..||.+||    
T Consensus       184 ~~~~~~~~~Di~slG~~l~el~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~dp~~Rp----  256 (279)
T cd05109         184 LHRRFTHQSDVWSYGVTVWELMTFGAKPYD-GIPAREIPDLLE-KG-ERLPQPPICTIDVYMIMVKCWMIDSECRP----  256 (279)
T ss_pred             ccCCCCchhHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHH-CC-CcCCCCccCCHHHHHHHHHHcCCChhhCc----
Confidence            6555543              44 899998 666666665555 32 34455667899999999999999999999    


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                       ++.+++.
T Consensus       257 -~~~~l~~  263 (279)
T cd05109         257 -RFRELVD  263 (279)
T ss_pred             -CHHHHHH
Confidence             4488774

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.56  E-value=1.5e-14  Score=119.70  Aligned_cols=128  Identities=15%  Similarity=0.147  Sum_probs=92.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc---ccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL---RLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~---~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     ||||.||+++.+.   .++|+|||+++....+...   ....+++.|||   |    |++
T Consensus       217 i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~---~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  286 (374)
T cd05106         217 FSSQVAQGMDFLASKNCIHRDVAARNVLLTDGR---VAKICDFGLARDIMNDSNYVVKGNARLPVKWMA---P----ESI  286 (374)
T ss_pred             HHHHHHHHHHHHHHCCEEeccCchheEEEeCCC---eEEEeeceeeeeccCCcceeeccCCCCccceeC---H----HHh
Confidence            368999999999988     8999999998743   4899999998765443211   12234567999   9    877


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....|+.              ++ |..||. .......+..+...+ .....|..+++++.+++.+||..||.+||+   
T Consensus       287 ~~~~~~~~~DvwSlGvil~ellt~G~~Pf~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~cl~~dp~~RPs---  361 (374)
T cd05106         287 FDCVYTVQSDVWSYGILLWEIFSLGKSPYP-GILVNSKFYKMVKRG-YQMSRPDFAPPEIYSIMKMCWNLEPTERPT---  361 (374)
T ss_pred             cCCCCCccccHHHHHHHHHHHHhCCCCCCc-cccccHHHHHHHHcc-cCccCCCCCCHHHHHHHHHHcCCChhhCcC---
Confidence            6555543              44 999998 554444443433122 345566778999999999999999999994   


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                        +.++.+
T Consensus       362 --~~~l~~  367 (374)
T cd05106         362 --FSQISQ  367 (374)
T ss_pred             --HHHHHH
Confidence              476653

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.56  E-value=2e-14  Score=115.89  Aligned_cols=127  Identities=9%  Similarity=0.083  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccc---cccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR---LLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~---~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.||+.||+|||+.     ||||+||+++.+.   .++|+|||.++.........   ...++..|+|   |    |++.
T Consensus       115 ~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~---~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~a---p----E~~~  184 (316)
T cd05108         115 CVQIAKGMNYLEERRLVHRDLAARNVLVKTPQ---HVKITDFGLAKLLGADEKEYHAEGGKVPIKWMA---L----ESIL  184 (316)
T ss_pred             HHHHHHHHHHHHhcCeeccccchhheEecCCC---cEEEccccccccccCCCcceeccCCccceeecC---h----HHhc
Confidence            57999999999997     7999999998853   38999999998765433222   2234567999   9    8776


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. +.+..+....+. .+ ..+..|..++.++.+++.+|+..||.+||+    
T Consensus       185 ~~~~~~~~Di~slGv~l~el~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rps----  257 (316)
T cd05108         185 HRIYTHQSDVWSYGVTVWELMTFGSKPYD-GIPASEISSILE-KG-ERLPQPPICTIDVYMIMVKCWMIDADSRPK----  257 (316)
T ss_pred             cCCCCchhhhHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHh-CC-CCCCCCCCCCHHHHHHHHHHccCChhhCcC----
Confidence            555543              44 999998 766666544443 22 344556678999999999999999999994    


Q ss_pred             ChhhhhcC
Q psy3184         148 GIVDIKKH  155 (185)
Q Consensus       148 ~~~~ll~h  155 (185)
                       +.+++.+
T Consensus       258 -~~~l~~~  264 (316)
T cd05108         258 -FRELIIE  264 (316)
T ss_pred             -HHHHHHH
Confidence             4777764

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.56  E-value=2.8e-14  Score=113.51  Aligned_cols=126  Identities=13%  Similarity=0.137  Sum_probs=95.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.|++.||+|||++     |+||+||+++.+.   .++|+|||.+.......   ......+++.|+|   |    |++
T Consensus       125 ~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  194 (288)
T cd05093         125 IAQQIAAGMVYLASQHFVHRDLATRNCLVGENL---LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMP---P----ESI  194 (288)
T ss_pred             HHHHHHHHHHHHHhCCeeecccCcceEEEccCC---cEEeccCCccccccCCceeecCCCCCccccccC---H----HHh
Confidence            367999999999998     7899999998753   38999999987653321   1122345778999   9    877


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. ..+.......+. .+ .....+..++.++.+|+.+||..||.+||+   
T Consensus       195 ~~~~~~~~sDiwslG~il~~l~t~g~~p~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt---  268 (288)
T cd05093         195 MYRKFTTESDVWSLGVVLWEIFTYGKQPWY-QLSNNEVIECIT-QG-RVLQRPRTCPKEVYDLMLGCWQREPHMRLN---  268 (288)
T ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-cC-CcCCCCCCCCHHHHHHHHHHccCChhhCCC---
Confidence            6554443              55 899998 777777777777 33 234556678999999999999999999994   


Q ss_pred             CChhhhh
Q psy3184         147 GGIVDIK  153 (185)
Q Consensus       147 ~~~~~ll  153 (185)
                        +++++
T Consensus       269 --~~~v~  273 (288)
T cd05093         269 --IKEIH  273 (288)
T ss_pred             --HHHHH
Confidence              47664

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.56  E-value=1.5e-14  Score=116.15  Aligned_cols=128  Identities=13%  Similarity=0.096  Sum_probs=94.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||++.............++..|+|   |    |.+...
T Consensus       129 ~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  198 (303)
T cd05088         129 FAADVARGMDYLSQKQFIHRDLAARNILVGENY---VAKIADFGLSRGQEVYVKKTMGRLPVRWMA---I----ESLNYS  198 (303)
T ss_pred             HHHHHHHHHHHHHhCCccccccchheEEecCCC---cEEeCccccCcccchhhhcccCCCcccccC---H----HHHhcc
Confidence            468999999999997     7899999998753   389999998864322111112234567999   9    766554


Q ss_pred             Ccce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .++.              ++ |..||. +.+..+....+. .+ .....|..++.++.+|+.+||..+|.+||     ++
T Consensus       199 ~~~~~~Di~slG~il~ellt~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----~~  270 (303)
T cd05088         199 VYTTNSDVWSYGVLLWEIVSLGGTPYC-GMTCAELYEKLP-QG-YRLEKPLNCDDEVYDLMRQCWREKPYERP-----SF  270 (303)
T ss_pred             CCcccccchhhhhHHHHHHhcCCCCcc-cCChHHHHHHHh-cC-CcCCCCCCCCHHHHHHHHHHcCCChhhCc-----CH
Confidence            4432              54 999998 777777777665 22 24456667899999999999999999999     44


Q ss_pred             hhhhcC
Q psy3184         150 VDIKKH  155 (185)
Q Consensus       150 ~~ll~h  155 (185)
                      ++++.+
T Consensus       271 ~~il~~  276 (303)
T cd05088         271 AQILVS  276 (303)
T ss_pred             HHHHHH
Confidence            777764

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.56  E-value=2.7e-14  Score=113.56  Aligned_cols=134  Identities=16%  Similarity=0.175  Sum_probs=91.8

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.|++.||.|||+.     ||||+||+++.+.   +++|+|||.++..... .......+++.|+|   |    |++.
T Consensus       107 ~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~---~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  176 (291)
T cd07870         107 LFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLG---ELKLADFGLARAKSIPSQTYSSEVVTLWYRP---P----DVLL  176 (291)
T ss_pred             HHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCC---cEEEeccccccccCCCCCCCCCccccccccC---C----ceee
Confidence            3468999999999998     7899999998753   4999999988754332 22334567899999   9    7654


Q ss_pred             cc-Ccce--------------eccCCCCCCCCC-hHHHHHHHHhc-CCC-------------------ccCCC-------
Q psy3184          83 NV-GIDN--------------IFSRPPFCVMND-PMQTYNMIINV-GID-------------------KIPFP-------  119 (185)
Q Consensus        83 ~~-~~~~--------------l~g~~Pf~~~~~-~~~~~~~i~~~-~~~-------------------~~~~p-------  119 (185)
                      +. .++.              ++|..||. +.+ ..+.+..+... +..                   ....+       
T Consensus       177 ~~~~~~~~~Dv~slG~~l~~l~~g~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (291)
T cd07870         177 GATDYSSALDIWGAGCIFIEMLQGQPAFP-GVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVW  255 (291)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHhCCCCCC-CchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhc
Confidence            32 2222              88999997 433 22222222100 000                   00000       


Q ss_pred             --CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         120 --KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       120 --~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                        ...+.++.+++.+|+..||.+||     ++++++.||||
T Consensus       256 ~~~~~~~~~~~ll~~~l~~dp~~R~-----t~~~~l~h~~~  291 (291)
T cd07870         256 KRLSRPPKAEDLASQMLMMFPKDRI-----SAQDALLHPYF  291 (291)
T ss_pred             cccCCChHHHHHHHHHhCcCcccCc-----CHHHHhcCCCC
Confidence              01367899999999999999999     66999999998

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>KOG1006|consensus

Probab=99.56  E-value=6.1e-15  Score=114.50  Aligned_cols=132  Identities=17%  Similarity=0.292  Sum_probs=100.0

Q ss_pred             HHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc--c
Q psy3184          13 QVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN--V   84 (185)
Q Consensus        13 qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~--~   84 (185)
                      -.+.||+||...      |+||.|||+++.  | ++||+|||++..+...--.+.-.|+..|||   |    |.+..  .
T Consensus       175 atV~AL~yLK~~lkiIHRDvKPSNILldr~--G-~vKLCDFGIcGqLv~SiAkT~daGCrpYmA---P----ERi~p~~~  244 (361)
T KOG1006|consen  175 ATVDALDYLKEELKIIHRDVKPSNILLDRH--G-DVKLCDFGICGQLVDSIAKTVDAGCRPYMA---P----ERIDPSDK  244 (361)
T ss_pred             eehhHHHHHHHHhhhhhccCChhheEEecC--C-CEeeecccchHhHHHHHHhhhccCCccccC---h----hccCCccC
Confidence            346788888764      999999999994  5 499999999976644433334578999999   9    87764  3


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCc-cCCCC---CCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK-IPFPK---HVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~-~~~p~---~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      +|+-              .+|..|+...++..+.+..++ .|..+ +.++.   .+|.....||..||.+|-..||.+  
T Consensus       245 gyDiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~~Vv-~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky--  321 (361)
T KOG1006|consen  245 GYDIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLCQVV-IGDPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKY--  321 (361)
T ss_pred             CcchhhhhhhhcceEeeeecCCCCcchHHHHHHHHHHHH-cCCCCeecCcccccccCHHHHHHHHHHhhcccccCcch--
Confidence            4553              899999984455556666666 44222 23333   389999999999999999999966  


Q ss_pred             CChhhhhcCCCCCC
Q psy3184         147 GGIVDIKKHKWFQG  160 (185)
Q Consensus       147 ~~~~~ll~hp~f~~  160 (185)
                         .+|+.+||++-
T Consensus       322 ---~~Lk~~~fyr~  332 (361)
T KOG1006|consen  322 ---DDLKKFPFYRM  332 (361)
T ss_pred             ---hhhhcCchhhh
Confidence               99999999853

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.56  E-value=2.6e-14  Score=113.21  Aligned_cols=128  Identities=16%  Similarity=0.187  Sum_probs=97.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.|++.||.|||++     |+||+||+++.+.   .++++|||+++......   ......++..|+|   |    |.+
T Consensus       129 i~~~i~~al~~lH~~~i~H~dlkp~nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  198 (283)
T cd05090         129 IAIQIAAGMEYLSSHFFVHKDLAARNILIGEQL---HVKISDLGLSREIYSADYYRVQPKSLLPIRWMP---P----EAI  198 (283)
T ss_pred             HHHHHHHHHHHHHhcCeehhccccceEEEcCCC---cEEeccccccccccCCcceecccCCCccceecC---h----HHh
Confidence            367999999999998     7899999999853   38999999997654321   2233456678999   9    877


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..++.              ++ |..||. +.+.......+.. + ..+..|..++.++.+++.+|+..||.+||++  
T Consensus       199 ~~~~~~~~~Dv~slG~il~el~~~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~--  273 (283)
T cd05090         199 MYGKFSSDSDIWSFGVVLWEIFSFGLQPYY-GFSNQEVIEMVRK-R-QLLPCSEDCPPRMYSLMTECWQEGPSRRPRF--  273 (283)
T ss_pred             ccCCCCchhhhHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHHc-C-CcCCCCCCCCHHHHHHHHHHcccCcccCcCH--
Confidence            6544443              54 999998 7776676666652 2 3456677889999999999999999999944  


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                         .+++++
T Consensus       274 ---~~i~~~  279 (283)
T cd05090         274 ---KDIHTR  279 (283)
T ss_pred             ---HHHHHH
Confidence               777654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.56  E-value=1.9e-14  Score=117.47  Aligned_cols=129  Identities=13%  Similarity=0.129  Sum_probs=94.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     |+||.||+++.+.   .++|+|||++..+....   ......++..|+|   |    |++
T Consensus       178 ~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~---~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  247 (337)
T cd05054         178 YSFQVARGMEFLASRKCIHRDLAARNILLSENN---VVKICDFGLARDIYKDPDYVRKGDARLPLKWMA---P----ESI  247 (337)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCcceEEEeCCC---cEEEeccccchhcccCcchhhccCCCCCccccC---c----HHh
Confidence            368999999999997     7999999998753   39999999998654322   1223455678999   9    877


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..++.              ++ |..||. +....+.+......+ .....|..++.++.+++.+||..+|++||    
T Consensus       248 ~~~~~~~~~Di~SlGv~l~el~t~g~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~~p~~RP----  321 (337)
T cd05054         248 FDKVYTTQSDVWSFGVLLWEIFSLGASPYP-GVQIDEEFCRRLKEG-TRMRAPEYATPEIYSIMLDCWHNNPEDRP----  321 (337)
T ss_pred             cCCCCCccccHHHHHHHHHHHHHcCCCCCC-CCCccHHHHHHHhcc-CCCCCCccCCHHHHHHHHHHccCChhhCc----
Confidence            6655544              44 999998 544444333333122 34556677899999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.++++|
T Consensus       322 -s~~ell~~  329 (337)
T cd05054         322 -TFSELVEI  329 (337)
T ss_pred             -CHHHHHHH
Confidence             55888764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.56  E-value=1.5e-14  Score=113.46  Aligned_cols=132  Identities=16%  Similarity=0.234  Sum_probs=93.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.|++|||+.     |++|+||+++.+  + .++++|||.+....... ......|++.|+|   |    |.+..
T Consensus       111 ~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~--~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~~  180 (267)
T cd06646         111 VCRETLQGLAYLHSKGKMHRDIKGANILLTDN--G-DVKLADFGVAAKITATIAKRKSFIGTPYWMA---P----EVAAV  180 (267)
T ss_pred             HHHHHHHHHHHHHHCCccccCCCHHHEEECCC--C-CEEECcCccceeecccccccCccccCccccC---H----hHccc
Confidence            467999999999997     789999999875  3 39999999998664332 2345678999999   9    76532


Q ss_pred             ---cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCc--cCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          84 ---VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK--IPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        84 ---~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~--~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                         ..++.              ++|..||. ..+.......+.......  ...+..++.++.+||++||..+|++||  
T Consensus       181 ~~~~~~~~~~Dvws~G~il~el~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp--  257 (267)
T cd06646         181 EKNGGYNQLCDIWAVGITAIELAELQPPMF-DLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRP--  257 (267)
T ss_pred             ccCCCCcchhhHHHHHHHHHHHHhCCCCcc-ccchhhhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhCc--
Confidence               12221              77899997 444333322222011011  112235789999999999999999999  


Q ss_pred             CCCChhhhhcCCC
Q psy3184         145 QRGGIVDIKKHKW  157 (185)
Q Consensus       145 ~~~~~~~ll~hp~  157 (185)
                         ++++++.|+|
T Consensus       258 ---~~~~il~~l~  267 (267)
T cd06646         258 ---TAERLLTHLF  267 (267)
T ss_pred             ---CHHHHhcCCC
Confidence               5599999987

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.56  E-value=3.8e-14  Score=111.16  Aligned_cols=126  Identities=15%  Similarity=0.198  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccc--cccCCccccccCCCcccccchhc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR--LLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~--~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      +.|++.||.|||++     |+||.||+++.+.   .++++|||.+..........  ...+++.|+|   |    |.+.+
T Consensus       110 ~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~---~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  179 (263)
T cd05052         110 ATQISSAMEYLEKKNFIHRDLAARNCLVGENH---LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA---P----ESLAY  179 (263)
T ss_pred             HHHHHHHHHHHHhCCEeecccCcceEEEcCCC---cEEeCCCccccccccceeeccCCCCCccccCC---H----HHhcc
Confidence            68999999999987     7999999998753   39999999987664432211  2234567999   9    87665


Q ss_pred             cCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          84 VGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        84 ~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ..++.              ++ |..||. +.+..+....+. .+ ..+..|..++.++.++|.+||..||.+||+     
T Consensus       180 ~~~~~~~Dv~slG~il~el~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~-----  251 (263)
T cd05052         180 NKFSIKSDVWAFGVLLWEIATYGMSPYP-GIDLSQVYELLE-KG-YRMERPEGCPPKVYELMRACWQWNPSDRPS-----  251 (263)
T ss_pred             CCCCchhHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHH-CC-CCCCCCCCCCHHHHHHHHHHccCCcccCCC-----
Confidence            54443              45 899998 888777777776 22 356677889999999999999999999994     


Q ss_pred             hhhhhc
Q psy3184         149 IVDIKK  154 (185)
Q Consensus       149 ~~~ll~  154 (185)
                      +.++++
T Consensus       252 ~~~l~~  257 (263)
T cd05052         252 FAEIHQ  257 (263)
T ss_pred             HHHHHH
Confidence            477653

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.56  E-value=3.1e-14  Score=112.19  Aligned_cols=133  Identities=17%  Similarity=0.210  Sum_probs=95.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.||.|||++     +++|+||+++.+  + .++++|||.+....... ......++..|+|   |    |++..
T Consensus       103 ~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~--~-~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~a---P----E~~~~  172 (282)
T cd07829         103 IMYQLLRGLAYCHSHRILHRDLKPQNILINRD--G-VLKLADFGLARAFGIPLRTYTHEVVTLWYRA---P----EILLG  172 (282)
T ss_pred             HHHHHHHHHHHHHHCCcccCCCChheEEEcCC--C-CEEEecCCcccccCCCccccCccccCcCcCC---h----HHhcC
Confidence            367999999999998     789999999885  3 38999999987654432 2233456788999   9    76654


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCC---------------CccCCC-----------CCC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI---------------DKIPFP-----------KHV  122 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~---------------~~~~~p-----------~~~  122 (185)
                      . .++.              ++|.+||. +.+..+.+..+.....               ....+|           ..+
T Consensus       173 ~~~~~~~~Dv~slG~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (282)
T cd07829         173 SKHYSTAVDIWSVGCIFAEMITGKPLFP-GDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRL  251 (282)
T ss_pred             CcCCCccccHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcccc
Confidence            3 3332              88899998 7665555444331000               000111           134


Q ss_pred             CHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       123 s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      +.++.++|++||..||.+||     ++++++.||||
T Consensus       252 ~~~~~~~i~~~l~~~P~~Rp-----~~~~~l~~p~~  282 (282)
T cd07829         252 DPEGIDLLSKMLQYNPAKRI-----SAKEALKHPYF  282 (282)
T ss_pred             cHHHHHHHHHhhccCcccCC-----CHHHHhhCcCC
Confidence            78999999999999999999     66999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.56  E-value=3.3e-14  Score=112.03  Aligned_cols=127  Identities=11%  Similarity=0.129  Sum_probs=97.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||+.     ||+|+||+++.+.   .++|+|||.++.+....   ......++..|+|   |    |.+
T Consensus       124 ~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  193 (277)
T cd05032         124 MAAEIADGMAYLAAKKFVHRDLAARNCMVAEDL---TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMA---P----ESL  193 (277)
T ss_pred             HHHHHHHHHHHHHhCCccccccChheEEEcCCC---CEEECCcccchhhccCcccccCCCCCccccccC---H----HHH
Confidence            467999999999997     7999999999863   38999999987553321   2223456788999   9    776


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. +.+..+....+. .+ ....+|..++.++.+++.+||..+|.+||    
T Consensus       194 ~~~~~~~~~Di~slG~il~el~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----  266 (277)
T cd05032         194 KDGVFTTKSDVWSFGVVLWEMATLAEQPYQ-GLSNEEVLKFVI-DG-GHLDLPENCPDKLLELMRMCWQYNPKMRP----  266 (277)
T ss_pred             hcCCCCcccchHHHHHHHHHhhccCCCCCc-cCCHHHHHHHHh-cC-CCCCCCCCCCHHHHHHHHHHcCCChhhCC----
Confidence            5544433              44 899998 777777777666 22 35667888899999999999999999999    


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                       ++.+++.
T Consensus       267 -t~~~l~~  273 (277)
T cd05032         267 -TFLEIVS  273 (277)
T ss_pred             -CHHHHHH
Confidence             4477764

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.55  E-value=4.1e-14  Score=112.09  Aligned_cols=126  Identities=13%  Similarity=0.175  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.||+.|+.|||+.     ||||+||+++.+.   .++|+|||++.......   ......+++.|+|   |    |++.
T Consensus       128 ~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~---~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  197 (280)
T cd05092         128 ASQIASGMVYLASLHFVHRDLATRNCLVGQGL---VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMP---P----ESIL  197 (280)
T ss_pred             HHHHHHHHHHHHHCCeecccccHhhEEEcCCC---CEEECCCCceeEcCCCceeecCCCccccccccC---H----HHhc
Confidence            57999999999988     7899999998753   48999999987553321   1122345678999   9    8776


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      +..++.              ++ |.+||. ..+.......+. .+ .....|..+++++.+||.+||..||.+||     
T Consensus       198 ~~~~~~~~Di~slG~il~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~cl~~~P~~Rp-----  269 (280)
T cd05092         198 YRKFTTESDIWSFGVVLWEIFTYGKQPWY-QLSNTEAIECIT-QG-RELERPRTCPPEVYAIMQGCWQREPQQRM-----  269 (280)
T ss_pred             cCCcCchhhHHHHHHHHHHHHcCCCCCCc-cCCHHHHHHHHH-cC-ccCCCCCCCCHHHHHHHHHHccCChhhCC-----
Confidence            655544              55 899998 666666666665 22 34566778899999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++++++.
T Consensus       270 ~~~~l~~  276 (280)
T cd05092         270 VIKDIHS  276 (280)
T ss_pred             CHHHHHH
Confidence            4477753

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.55  E-value=3.1e-14  Score=111.54  Aligned_cols=121  Identities=12%  Similarity=0.119  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc----ccccCCccccccCCCcccccch
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL----RLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~----~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      +.|++.||.|||++     ||||+||+++.+.   .++++|||.+.........    ....+++.|+|   |    |++
T Consensus       101 ~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  170 (257)
T cd05115         101 MHQVSMGMKYLEGKNFVHRDLAARNVLLVNQH---YAKISDFGLSKALGADDSYYKARSAGKWPLKWYA---P----ECI  170 (257)
T ss_pred             HHHHHHHHHHHHhcCeeecccchheEEEcCCC---cEEeccCCccccccCCccceeccCCCCCCcccCC---H----HHH
Confidence            67999999999998     7999999998753   4899999998765433211    11223568999   9    876


Q ss_pred             hccCcce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          82 INVGIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        82 ~~~~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ....++.              + +|..||. ..+..+....+. .+ ..+..|...++++.+++.+|+..||.+||++
T Consensus       171 ~~~~~~~~~Di~slG~~l~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~  245 (257)
T cd05115         171 NFRKFSSRSDVWSYGITMWEAFSYGQKPYK-KMKGPEVMSFIE-QG-KRLDCPAECPPEMYALMKDCWIYKWEDRPNF  245 (257)
T ss_pred             ccCCCCchhhHHHHHHHHHHHhcCCCCCcC-cCCHHHHHHHHH-CC-CCCCCCCCCCHHHHHHHHHHcCCChhhCcCH
Confidence            6544443              4 4999998 777677666665 33 3566777889999999999999999999955

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.55  E-value=5.2e-14  Score=111.05  Aligned_cols=126  Identities=12%  Similarity=0.145  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..|++.|+.|+|++     |+||+||+++.+.   .++|+|||.+.......   ......+++.|+|   |    |++.
T Consensus       128 ~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~---~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  197 (280)
T cd05049         128 AVQIASGMVYLASQHFVHRDLATRNCLVGYDL---VVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMP---P----ESIM  197 (280)
T ss_pred             HHHHHHHHHHHhhCCeeccccccceEEEcCCC---eEEECCcccceecccCcceecCCCCcccceecC---h----hhhc
Confidence            67999999999997     7899999998863   49999999987553221   1123345788999   9    8877


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      +..++.              ++ |..||. ..+..+....+. .+ .....|..++.++.+++.+||..||.+||     
T Consensus       198 ~~~~~~~~Di~slG~il~e~~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----  269 (280)
T cd05049         198 YRKFTTESDVWSFGVVLWEIFTYGKQPWY-GLSNEEVIECIT-QG-RLLQRPRTCPSEVYDIMLGCWKRDPQQRI-----  269 (280)
T ss_pred             cCCcchhhhHHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHH-cC-CcCCCCCCCCHHHHHHHHHHcCCCcccCC-----
Confidence            655554              55 999998 777777777776 33 23445567899999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++++++.
T Consensus       270 ~~~eil~  276 (280)
T cd05049         270 NIKDIHE  276 (280)
T ss_pred             CHHHHHH
Confidence            5577764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.55  E-value=4e-14  Score=111.72  Aligned_cols=133  Identities=15%  Similarity=0.195  Sum_probs=96.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.|++|||+.     +++|.||+++.+.   .++++|||.+.......  ......++..|+|   |    |.+.
T Consensus       105 i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~---~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~  174 (287)
T cd07840         105 YMKQLLEGLQYLHSNGILHRDIKGSNILINNDG---VLKLADFGLARPYTKRNSADYTNRVITLWYRP---P----ELLL  174 (287)
T ss_pred             HHHHHHHHHHHHHHCCceeccCcHHHeEEcCCC---CEEEccccceeeccCCCcccccccccccccCC---c----eeeE
Confidence            367899999999998     7899999999853   39999999998665432  2233467888999   9    7554


Q ss_pred             cc-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCC--ccC--------------------------CC
Q psy3184          83 NV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID--KIP--------------------------FP  119 (185)
Q Consensus        83 ~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~--~~~--------------------------~p  119 (185)
                      +. .++.              ++|..||. +.+.......+......  ...                          +.
T Consensus       175 ~~~~~~~~~Dv~slG~~l~el~t~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (287)
T cd07840         175 GATRYGPEVDMWSVGCILAELFLGKPIFQ-GSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFK  253 (287)
T ss_pred             ccccCChHHHHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhc
Confidence            32 2222              88999998 77666555544311000  000                          01


Q ss_pred             CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         120 KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       120 ~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      ..++.++.+++.+||..+|.+||     ++++++.||||
T Consensus       254 ~~~~~~~~~~i~~~l~~~P~~Rp-----~~~~~l~~~~~  287 (287)
T cd07840         254 HLIDPSALDLLDKLLTLDPKKRI-----SADQALQHEYF  287 (287)
T ss_pred             ccCCHHHHHHHHHHcCCChhhCc-----CHHHHhhCcCC
Confidence            11388999999999999999999     66999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>KOG0197|consensus

Probab=99.55  E-value=3.3e-14  Score=118.55  Aligned_cols=121  Identities=17%  Similarity=0.267  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccC--CccccccCCCcccccchhc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSG--RPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~g--t~~y~a~~~P~~~~E~~~~   83 (185)
                      ++||++|++||.++     ||-..|||++.+.   .+||+|||+++.++.+......-|  -..|.|   |    |.+..
T Consensus       309 a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~---~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtA---P----Ea~~~  378 (468)
T KOG0197|consen  309 AAQIAEGMAYLESKNYIHRDLAARNILVDEDL---VVKISDFGLARLIGDDEYTASEGGKFPIKWTA---P----EALNY  378 (468)
T ss_pred             HHHHHHHHHHHHhCCccchhhhhhheeeccCc---eEEEcccccccccCCCceeecCCCCCCceecC---H----HHHhh
Confidence            89999999999998     8889999999964   499999999996554433222222  235899   9    99987


Q ss_pred             cCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          84 VGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        84 ~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ..|+.               -.|+.||. +.+..++++.+. .| .+..-|..+++++.+++..|+..+|++||++
T Consensus       379 ~~FS~kSDVWSFGVlL~E~fT~G~~py~-~msn~ev~~~le-~G-yRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF  451 (468)
T KOG0197|consen  379 GKFSSKSDVWSFGVLLWELFTYGRVPYP-GMSNEEVLELLE-RG-YRLPRPEGCPDEVYELMKSCWHEDPEDRPTF  451 (468)
T ss_pred             CCcccccceeehhhhHHHHhccCCCCCC-CCCHHHHHHHHh-cc-CcCCCCCCCCHHHHHHHHHHhhCCcccCCCH
Confidence            76665               77999999 888899999998 55 5777888999999999999999999999976

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.55  E-value=3.1e-14  Score=113.89  Aligned_cols=125  Identities=14%  Similarity=0.096  Sum_probs=91.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--------ccccccCCccccccCCCcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--------ILRLLSGRPPFCVMNDPMQ   76 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--------~~~~~~gt~~y~a~~~P~~   76 (185)
                      .+.|++.||+|||+.     ||||+||+++.+.   +++|+|||+++......        ......||+.|+|   |  
T Consensus       131 i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~---~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~a---p--  202 (294)
T PHA02882        131 IMKDMLTTLEYIHEHGISHGDIKPENIMVDGNN---RGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAG---L--  202 (294)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCC---cEEEEEcCCceeeccCCcccccccccccccCCCccccC---H--
Confidence            478999999999997     8999999998743   48999999998664321        1233579999999   9  


Q ss_pred             cccchhccCcce--------------eccCCCCCCCCC-hHH--------HHHHHHhcCCCccCCCCCCCHHHHHHHHHH
Q psy3184          77 TYNMIINVGIDN--------------IFSRPPFCVMND-PMQ--------TYNMIINVGIDKIPFPKHVTRTAQSLIKAL  133 (185)
Q Consensus        77 ~~E~~~~~~~~~--------------l~g~~Pf~~~~~-~~~--------~~~~i~~~~~~~~~~p~~~s~~~~~li~~~  133 (185)
                        |+..+..|+.              ++|..||. +.+ ...        ....+. .+  ...+ ...+.++.++++.|
T Consensus       203 --e~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~-~~~~~~~~~~~~~~~~~~~~~-~~--~~~~-~~~~~~~~~~~~~~  275 (294)
T PHA02882        203 --DAHNGACVTRRGDLESLGYCMLKWAGIKLPWK-GFGHNGNLIHAAKCDFIKRLH-EG--KIKI-KNANKFIYDFIECV  275 (294)
T ss_pred             --HHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC-ccccchHHHHHhHHHHHHHhh-hh--hhcc-CCCCHHHHHHHHHH
Confidence              8777665554              88999998 542 222        122222 11  2222 34689999999999


Q ss_pred             hhcCcCcccCCCCCChhhhhc
Q psy3184         134 CKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       134 l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      +..+|.+||++     +++++
T Consensus       276 ~~~~~~~rp~~-----~~l~~  291 (294)
T PHA02882        276 TKLSYEEKPDY-----DALIK  291 (294)
T ss_pred             HhCCCCCCCCH-----HHHHH
Confidence            99999999955     76653

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.54  E-value=6.1e-14  Score=109.82  Aligned_cols=126  Identities=15%  Similarity=0.196  Sum_probs=94.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc--ccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL--RLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~--~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.|++.||.|||+.     |++|+||+++.+.   .++++|||.+.....+...  ....++..|+|   |    |...
T Consensus       107 ~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~---P----e~~~  176 (260)
T cd05069         107 MAAQIADGMAYIERMNYIHRDLRAANILVGDNL---VCKIADFGLARLIEDNEYTARQGAKFPIKWTA---P----EAAL  176 (260)
T ss_pred             HHHHHHHHHHHHHhCCEeecccCcceEEEcCCC---eEEECCCccceEccCCcccccCCCccchhhCC---H----HHhc
Confidence            367999999999997     7899999998753   4899999999766443221  12345678999   9    7765


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. +.+..+....+.. + .....|..++..+++++++||..||.+||+    
T Consensus       177 ~~~~~~~~Di~slG~~l~el~t~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~----  249 (260)
T cd05069         177 YGRFTIKSDVWSFGILLTELVTKGRVPYP-GMVNREVLEQVER-G-YRMPCPQGCPESLHELMKLCWKKDPDERPT----  249 (260)
T ss_pred             cCCcChHHHHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHHc-C-CCCCCCcccCHHHHHHHHHHccCCcccCcC----
Confidence            444432              56 899998 7777777766662 2 244556778999999999999999999994    


Q ss_pred             Chhhhh
Q psy3184         148 GIVDIK  153 (185)
Q Consensus       148 ~~~~ll  153 (185)
                       ++++.
T Consensus       250 -~~~i~  254 (260)
T cd05069         250 -FEYIQ  254 (260)
T ss_pred             -HHHHH
Confidence             46654

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.54  E-value=6.1e-14  Score=111.73  Aligned_cols=126  Identities=10%  Similarity=0.113  Sum_probs=95.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.|+.|||++     ||||.||+++.+.   .++|+|||.+.......   ......++..|+|   |    |.+
T Consensus       128 i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~---~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  197 (291)
T cd05094         128 IASQIASGMVYLASQHFVHRDLATRNCLVGANL---LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMP---P----ESI  197 (291)
T ss_pred             HHHHHHHHHHHHHhCCeeecccCcceEEEccCC---cEEECCCCcccccCCCceeecCCCCCcceeecC---h----HHh
Confidence            468999999999998     7899999999853   49999999987553322   1223456788999   9    777


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. ..+..+....+. .+ .....+..++.++.+++.+||..||.+||+.  
T Consensus       198 ~~~~~~~~~Di~slG~il~el~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~--  272 (291)
T cd05094         198 MYRKFTTESDVWSFGVILWEIFTYGKQPWF-QLSNTEVIECIT-QG-RVLERPRVCPKEVYDIMLGCWQREPQQRLNI--  272 (291)
T ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHh-CC-CCCCCCccCCHHHHHHHHHHcccChhhCcCH--
Confidence            6555443              56 999998 777777766666 22 2344556789999999999999999999944  


Q ss_pred             CChhhhh
Q psy3184         147 GGIVDIK  153 (185)
Q Consensus       147 ~~~~~ll  153 (185)
                         .+++
T Consensus       273 ---~~v~  276 (291)
T cd05094         273 ---KEIY  276 (291)
T ss_pred             ---HHHH
Confidence               6654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>KOG0670|consensus

Probab=99.54  E-value=1.9e-14  Score=120.38  Aligned_cols=137  Identities=15%  Similarity=0.223  Sum_probs=99.2

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.+|.|+..||..|..+     ||||+|||++..  ...++|+|||.+..+..+. .+.+.-+..|.|   |    |++.
T Consensus       539 RsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~--k~iLKLCDfGSA~~~~ene-itPYLVSRFYRa---P----EIiL  608 (752)
T KOG0670|consen  539 RSYAQQLFLALKLLKKCGVLHADIKPDNILVNES--KNILKLCDFGSASFASENE-ITPYLVSRFYRA---P----EIIL  608 (752)
T ss_pred             HHHHHHHHHHHHHHHhcCeeecccCccceEeccC--cceeeeccCcccccccccc-ccHHHHHHhccC---c----ceee
Confidence            45699999999999887     899999999985  3348999999997665554 334555778999   9    9988


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHH--H---------hcCC---Cc-------------------
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMI--I---------NVGI---DK-------------------  115 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i--~---------~~~~---~~-------------------  115 (185)
                      +.+|+.              .+|+.-|. |.+..+++.-.  +         ..|.   ..                   
T Consensus       609 G~~yd~~iD~WSvgctLYElYtGkIlFp-G~TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~  687 (752)
T KOG0670|consen  609 GLPYDYPIDTWSVGCTLYELYTGKILFP-GRTNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTERE  687 (752)
T ss_pred             cCcccCCccceeeceeeEEeeccceecC-CCCcHHHHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccccce
Confidence            888876              67888888 65544443211  1         0110   00                   


Q ss_pred             ---------------------cCCCC---CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         116 ---------------------IPFPK---HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       116 ---------------------~~~p~---~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                                           ..+|.   .+-..+++|+.+||..||++|+     ++.+.|.||||.+
T Consensus       688 ~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRi-----t~nqAL~HpFi~~  751 (752)
T KOG0670|consen  688 KRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRI-----TVNQALKHPFITE  751 (752)
T ss_pred             eEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcC-----CHHHHhcCCcccC
Confidence                                 01110   1225788999999999999999     5599999999974

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.54  E-value=4.2e-14  Score=112.87  Aligned_cols=133  Identities=12%  Similarity=0.153  Sum_probs=94.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||.|||+.     +++|.||+++.+.   .++++|||.+.......  ......++..|++   |    |++.
T Consensus       121 i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~  190 (302)
T cd07864         121 FMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKG---QIKLADFGLARLYNSEESRPYTNKVITLWYRP---P----ELLL  190 (302)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEECCCC---cEEeCcccccccccCCcccccccceeccCccC---h----HHhc
Confidence            367999999999998     7899999998853   49999999988664432  1222356788999   9    7664


Q ss_pred             cc-Ccce--------------eccCCCCCCCCChHHHHHHHHh--cCCCccCC-------------------------CC
Q psy3184          83 NV-GIDN--------------IFSRPPFCVMNDPMQTYNMIIN--VGIDKIPF-------------------------PK  120 (185)
Q Consensus        83 ~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~--~~~~~~~~-------------------------p~  120 (185)
                      .. .++.              ++|++||. ..+..+....+..  .+.....+                         ..
T Consensus       191 ~~~~~~~~~Di~slG~~~~el~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (302)
T cd07864         191 GEERYGPAIDVWSCGCILGELFTKKPIFQ-ANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFS  269 (302)
T ss_pred             CCCCCCchhHHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHhCCCChhhcccccccccccccccccccccchhhhcC
Confidence            32 2222              78999998 5554444433321  01001001                         12


Q ss_pred             CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       121 ~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      .++..+.++|.+||..||.+||     ++++++.||||
T Consensus       270 ~~~~~~~~li~~~l~~~P~~Rp-----~~~~il~~~~~  302 (302)
T cd07864         270 FIPTPALDLLDHMLTLDPSKRC-----TAEEALNSPWL  302 (302)
T ss_pred             CCCHHHHHHHHHHccCChhhCC-----CHHHHhcCCCC
Confidence            4689999999999999999999     55999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.54  E-value=7.3e-14  Score=109.04  Aligned_cols=127  Identities=17%  Similarity=0.160  Sum_probs=96.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc--ccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL--RLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~--~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.|++.||+|||++     |++|+||+++.+.   .++++|||.+.........  ....++..|+|   |    |++.
T Consensus       105 ~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~---~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  174 (256)
T cd05114         105 MCQDVCEGMEYLERNSFIHRDLAARNCLVSSTG---VVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSP---P----EVFN  174 (256)
T ss_pred             HHHHHHHHHHHHHHCCccccccCcceEEEcCCC---eEEECCCCCccccCCCceeccCCCCCchhhCC---h----hhcc
Confidence            467899999999998     7899999998753   4899999988755332221  12234567999   9    8776


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. ..+..+....+. .+ ..+..|...+.++.+++.+|+..+|.+||     
T Consensus       175 ~~~~~~~~Di~s~G~~l~el~~~g~~p~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~~~~li~~c~~~~p~~Rp-----  246 (256)
T cd05114         175 FSKYSSKSDVWSFGVLMWEVFTEGKMPFE-KKSNYEVVEMIS-RG-FRLYRPKLASMTVYEVMYSCWHEKPEGRP-----  246 (256)
T ss_pred             cCccchhhhhHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHH-CC-CCCCCCCCCCHHHHHHHHHHccCCcccCc-----
Confidence            554443              55 899998 888788888877 33 34555677899999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++++++.
T Consensus       247 s~~~l~~  253 (256)
T cd05114         247 TFAELLR  253 (256)
T ss_pred             CHHHHHH
Confidence            4477764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.53  E-value=8e-14  Score=109.03  Aligned_cols=122  Identities=15%  Similarity=0.218  Sum_probs=92.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc--ccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL--RLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~--~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.|++.||.|||+.     |++|+||+++.+.   .++++|||.+.........  ....++..|+|   |    |+..
T Consensus       107 ~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  176 (260)
T cd05070         107 MAAQVAAGMAYIERMNYIHRDLRSANILVGDGL---VCKIADFGLARLIEDNEYTARQGAKFPIKWTA---P----EAAL  176 (260)
T ss_pred             HHHHHHHHHHHHHHCCcccCCCccceEEEeCCc---eEEeCCceeeeeccCcccccccCCCCCccccC---h----HHHh
Confidence            367999999999998     7899999998853   4899999999876443221  12345567999   9    7765


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ...++.              ++ |.+||. +.+..+....+.. + ..+..|...+.++.+|+.+|+..+|.+||++
T Consensus       177 ~~~~~~~~Di~slG~~l~~l~~~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~  250 (260)
T cd05070         177 YGRFTIKSDVWSFGILLTELVTKGRVPYP-GMNNREVLEQVER-G-YRMPCPQDCPISLHELMLQCWKKDPEERPTF  250 (260)
T ss_pred             cCCCcchhhhHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHHc-C-CCCCCCCcCCHHHHHHHHHHcccCcccCcCH
Confidence            444432              55 899998 7777777777662 2 3556677789999999999999999999954

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.53  E-value=6.1e-14  Score=116.12  Aligned_cols=127  Identities=15%  Similarity=0.156  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc---ccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL---RLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~---~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.||+.||+|||+.     ||||+||+++.+.   .++|+|||+++........   ....++..|+|   |    |++.
T Consensus       220 ~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~---~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  289 (375)
T cd05104         220 SYQVAKGMSFLASKNCIHRDLAARNILLTHGR---ITKICDFGLARDIRNDSNYVVKGNARLPVKWMA---P----ESIF  289 (375)
T ss_pred             HHHHHHHHHHHHHCCeeccCCchhhEEEECCC---cEEEecCccceeccCcccccccCCCCCCcceeC---h----hHhc
Confidence            57999999999987     8999999998743   3899999998865433211   12334567999   9    8776


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. ..............+ .....|...+.++++|+.+||..||.+||     
T Consensus       290 ~~~~~~~sDi~slG~~l~ellt~g~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----  362 (375)
T cd05104         290 NCVYTFESDVWSYGILLWEIFSLGSSPYP-GMPVDSKFYKMIKEG-YRMLSPECAPSEMYDIMKSCWDADPLKRP-----  362 (375)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCCCC-CCCchHHHHHHHHhC-ccCCCCCCCCHHHHHHHHHHccCChhHCc-----
Confidence            655554              44 899998 554443333333132 23445667789999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++.++++
T Consensus       363 s~~eil~  369 (375)
T cd05104         363 TFKQIVQ  369 (375)
T ss_pred             CHHHHHH
Confidence            5587764

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.53  E-value=6.2e-14  Score=109.44  Aligned_cols=125  Identities=16%  Similarity=0.160  Sum_probs=95.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||++     +|||+||+++.+.   .++++|||+++......  ....++..|+|   |    |++...
T Consensus       107 ~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~---~~kl~dfg~~~~~~~~~--~~~~~~~~y~a---P----E~~~~~  174 (256)
T cd05082         107 FSLDVCEAMEYLEANNFVHRDLAARNVLVSEDN---VAKVSDFGLTKEASSTQ--DTGKLPVKWTA---P----EALREK  174 (256)
T ss_pred             HHHHHHHHHHHHHhCCEeccccchheEEEcCCC---cEEecCCccceeccccC--CCCccceeecC---H----HHHccC
Confidence            467999999999998     7999999998753   38999999987553322  23345678999   9    776655


Q ss_pred             Ccce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .++.              + .|..||. ..+..+....+. .+ .....+..+++.+.+++.+|+..+|.+||+     +
T Consensus       175 ~~~~~~Dv~slG~i~~~l~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt-----~  246 (256)
T cd05082         175 KFSTKSDVWSFGILLWEIYSFGRVPYP-RIPLKDVVPRVE-KG-YKMDAPDGCPPVVYDVMKQCWHLDAATRPS-----F  246 (256)
T ss_pred             CCCchhhhHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHh-cC-CCCCCCCCCCHHHHHHHHHHhcCChhhCcC-----H
Confidence            4443              3 3999998 777777777776 22 345566788999999999999999999994     4


Q ss_pred             hhhhc
Q psy3184         150 VDIKK  154 (185)
Q Consensus       150 ~~ll~  154 (185)
                      .++++
T Consensus       247 ~~l~~  251 (256)
T cd05082         247 LQLRE  251 (256)
T ss_pred             HHHHH
Confidence            77653

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.53  E-value=9.5e-14  Score=106.18  Aligned_cols=130  Identities=24%  Similarity=0.482  Sum_probs=100.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ...+++.++.|||+.     +++|.||+++.+  + .++++|||.+.............++..|++   |    |.....
T Consensus        92 ~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~--~-~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~---p----E~~~~~  161 (244)
T smart00220       92 YARQILSALEYLHSNGIIHRDLKPENILLDED--G-HVKLADFGLARQLDPGGLLTTFVGTPEYMA---P----EVLLGK  161 (244)
T ss_pred             HHHHHHHHHHHHHHcCeecCCcCHHHeEECCC--C-cEEEccccceeeeccccccccccCCcCCCC---H----HHHccC
Confidence            467899999999998     789999999986  3 499999999987766545556778999999   9    766543


Q ss_pred             Ccce--------------eccCCCCCCC-CChHHHHHHHHhcCCCccCCCC--C-CCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVM-NDPMQTYNMIINVGIDKIPFPK--H-VTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~-~~~~~~~~~i~~~~~~~~~~p~--~-~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .++.              ++|..||. . .+.......+. .+  ......  . ++.++.+++.+|+..+|.+||    
T Consensus       162 ~~~~~~Di~slG~~l~~l~~~~~p~~-~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp----  233 (244)
T smart00220      162 GYGKAVDVWSLGVILYELLTGKPPFP-GDDQLLELFKKIG-KP--KPPFPPPEWKISPEAKDLIRKLLVKDPEKRL----  233 (244)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCC-CCCcHHHHHHHHh-cc--CCCCccccccCCHHHHHHHHHHccCCchhcc----
Confidence            3332              78999998 5 55566665555 22  222222  1 889999999999999999999    


Q ss_pred             CChhhhhcCCCC
Q psy3184         147 GGIVDIKKHKWF  158 (185)
Q Consensus       147 ~~~~~ll~hp~f  158 (185)
                       ++.+++.||||
T Consensus       234 -~~~~~~~~~~~  244 (244)
T smart00220      234 -TAEEALQHPFF  244 (244)
T ss_pred             -CHHHHhhCCCC
Confidence             55999999997

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.53  E-value=7.5e-14  Score=112.49  Aligned_cols=126  Identities=13%  Similarity=0.168  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.||+.||.|||++     |+||+||+++.+.   .++|+|||.++......   ......++..|||   |    |++.
T Consensus       140 ~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  209 (314)
T cd05099         140 AYQVARGMEYLESRRCIHRDLAARNVLVTEDN---VMKIADFGLARGVHDIDYYKKTSNGRLPVKWMA---P----EALF  209 (314)
T ss_pred             HHHHHHHHHHHHHCCeeeccccceeEEEcCCC---cEEEccccccccccccccccccccCCCCccccC---H----HHHc
Confidence            67999999999997     7899999998753   49999999997654321   1122234567999   9    8776


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. +.+..+.+..+. .+ .....|..++.++++++.+||..+|.+||+    
T Consensus       210 ~~~~~~~~DiwslG~~l~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~cl~~~p~~Rps----  282 (314)
T cd05099         210 DRVYTHQSDVWSFGILMWEIFTLGGSPYP-GIPVEELFKLLR-EG-HRMDKPSNCTHELYMLMRECWHAVPTQRPT----  282 (314)
T ss_pred             cCCcCccchhhHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHcCCCcccCcC----
Confidence            554443              44 899998 888888887776 33 245567788999999999999999999994    


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                       +.+++.
T Consensus       283 -~~~ll~  288 (314)
T cd05099         283 -FKQLVE  288 (314)
T ss_pred             -HHHHHH
Confidence             466664

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.53  E-value=1e-13  Score=111.12  Aligned_cols=127  Identities=13%  Similarity=0.157  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.||+.||+|||++     ||||+||+++.+.   .++++|||.++......   ......+++.|+|   |    |++.
T Consensus       143 ~~qi~~al~~LH~~givH~dlkp~Nili~~~~---~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  212 (304)
T cd05101         143 TYQVARGMEYLASQKCIHRDLAARNVLVTENN---VMKIADFGLARDVNNIDYYKKTTNGRLPVKWMA---P----EALF  212 (304)
T ss_pred             HHHHHHHHHHHHHCCeeecccccceEEEcCCC---cEEECCCccceecccccccccccCCCCCceeeC---c----hhhc
Confidence            56999999999998     7899999998753   38999999998664322   1223345678999   9    7766


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      +..|+.              ++ |..||. +.+..++...+. .+ .....|..++.++++|+.+||..+|.+||     
T Consensus       213 ~~~~~~~~Di~slG~~l~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----  284 (304)
T cd05101         213 DRVYTHQSDVWSFGVLMWEIFTLGGSPYP-GIPVEELFKLLK-EG-HRMDKPANCTNELYMMMRDCWHAIPSHRP-----  284 (304)
T ss_pred             cCCCCchhhHHHHHHHHHHHHcCCCCCcc-cCCHHHHHHHHH-cC-CcCCCCCCCCHHHHHHHHHHcccChhhCC-----
Confidence            554543              34 789998 888888887776 32 34456677899999999999999999999     


Q ss_pred             ChhhhhcC
Q psy3184         148 GIVDIKKH  155 (185)
Q Consensus       148 ~~~~ll~h  155 (185)
                      ++.++++.
T Consensus       285 s~~e~l~~  292 (304)
T cd05101         285 TFKQLVED  292 (304)
T ss_pred             CHHHHHHH
Confidence            44777653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.53  E-value=1.3e-13  Score=109.27  Aligned_cols=127  Identities=9%  Similarity=0.092  Sum_probs=94.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||+.     |+||+||+++.+.   .++|+|||.++......   ......++..|++   |    |.+
T Consensus       114 i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~---p----E~~  183 (279)
T cd05111         114 WCVQIAKGMYYLEEHRMVHRNLAARNILLKSDS---IVQIADFGVADLLYPDDKKYFYSEHKTPIKWMA---L----ESI  183 (279)
T ss_pred             HHHHHHHHHHHHHHCCEeccccCcceEEEcCCC---cEEEcCCccceeccCCCcccccCCCCCcccccC---H----HHh
Confidence            467999999999997     7999999998753   38999999998664322   1223456778999   9    877


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....|+.              ++ |..||. +.........+. .+ ..+..|...+.++.+++.+|+..||.+||    
T Consensus       184 ~~~~~~~~~Dv~slG~il~el~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~c~~~~p~~Rp----  256 (279)
T cd05111         184 LFGRYTHQSDVWSYGVTVWEMMSYGAEPYA-GMRPHEVPDLLE-KG-ERLAQPQICTIDVYMVMVKCWMIDENVRP----  256 (279)
T ss_pred             ccCCcCchhhHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHH-CC-CcCCCCCCCCHHHHHHHHHHcCCCcccCc----
Confidence            6555543              44 999998 766655544444 33 34455666788999999999999999999    


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                       ++++++.
T Consensus       257 -s~~el~~  263 (279)
T cd05111         257 -TFKELAN  263 (279)
T ss_pred             -CHHHHHH
Confidence             4477754

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.53  E-value=9.1e-14  Score=108.68  Aligned_cols=125  Identities=15%  Similarity=0.164  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCcccccchhc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..|++.||+|||+.     +++|+||+++.+.   .++++|||.+........  .....++..|+|   |    |.+..
T Consensus       109 ~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  178 (261)
T cd05072         109 SAQIAEGMAYIERKNYIHRDLRAANVLVSESL---MCKIADFGLARVIEDNEYTAREGAKFPIKWTA---P----EAINF  178 (261)
T ss_pred             HHHHHHHHHHHHHCCeeccccchhhEEecCCC---cEEECCCccceecCCCceeccCCCccceecCC---H----HHhcc
Confidence            57999999999998     7899999998853   389999999987654321  122345678999   9    77655


Q ss_pred             cCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          84 VGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        84 ~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ..++.              ++ |..||. +.+.......+. .+ .....+..++.++.+++.+|+..+|.+||++    
T Consensus       179 ~~~~~~~Di~slG~~l~~l~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~----  251 (261)
T cd05072         179 GSFTIKSDVWSFGILLYEIVTYGKIPYP-GMSNSDVMSALQ-RG-YRMPRMENCPDELYDIMKTCWKEKAEERPTF----  251 (261)
T ss_pred             CCCChhhhhhhhHHHHHHHHccCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHccCCcccCcCH----
Confidence            44443              55 999998 777777777766 22 2334445689999999999999999999954    


Q ss_pred             hhhhh
Q psy3184         149 IVDIK  153 (185)
Q Consensus       149 ~~~ll  153 (185)
                       +++.
T Consensus       252 -~~i~  255 (261)
T cd05072         252 -DYLQ  255 (261)
T ss_pred             -HHHH
Confidence             6654

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.52  E-value=1.1e-13  Score=108.27  Aligned_cols=126  Identities=14%  Similarity=0.142  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-----ccccccCCccccccCCCcccccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      +.||+.||.|||+.     |++|+||+++.+.   .++++|||.+..+....     ......++..|+|   |    |.
T Consensus       104 ~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  173 (262)
T cd05058         104 GLQVAKGMEYLASKKFVHRDLAARNCMLDESF---TVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMA---L----ES  173 (262)
T ss_pred             HHHHHHHHHHHHhCCccccccCcceEEEcCCC---cEEECCccccccccCCcceeecccccCcCCccccC---h----hH
Confidence            56999999999997     7999999998853   38999999987553221     1123345678999   9    77


Q ss_pred             hhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +....++.              ++ |.+||. ..+..+....+. .+ ..+..|..++..+.+++.+||..+|.+||   
T Consensus       174 ~~~~~~~~~~Di~slG~~l~el~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rp---  247 (262)
T cd05058         174 LQTQKFTTKSDVWSFGVLLWELMTRGAPPYP-DVDSFDITVYLL-QG-RRLLQPEYCPDPLYEVMLSCWHPKPEMRP---  247 (262)
T ss_pred             hccCccchHHHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHh-cC-CCCCCCCcCCHHHHHHHHHHcCCChhhCC---
Confidence            65554443              45 577887 777777666665 22 34556677899999999999999999999   


Q ss_pred             CCChhhhhc
Q psy3184         146 RGGIVDIKK  154 (185)
Q Consensus       146 ~~~~~~ll~  154 (185)
                        ++.+++.
T Consensus       248 --~~~~il~  254 (262)
T cd05058         248 --TFSELVS  254 (262)
T ss_pred             --CHHHHHH
Confidence              4477764

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.52  E-value=8.4e-14  Score=110.75  Aligned_cols=128  Identities=14%  Similarity=0.167  Sum_probs=96.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.|++.||.|||+.     ||||.||+++.+.   .++|+|||.++.+.....   .....++..|+|   |    |.+
T Consensus       137 i~~qi~~al~~LH~~~ivH~dlkp~Nil~~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  206 (293)
T cd05053         137 FAYQVARGMEFLASKKCIHRDLAARNVLVTEDH---VMKIADFGLARDIHHIDYYRKTTNGRLPVKWMA---P----EAL  206 (293)
T ss_pred             HHHHHHHHHHHHHHCCccccccceeeEEEcCCC---eEEeCccccccccccccceeccCCCCCCccccC---H----HHh
Confidence            377999999999987     7899999998753   489999999886643221   112234567999   9    766


Q ss_pred             hccCcce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              + .|..||. +.+..+.+..+. .+ ..+..|...+.++.+|+.+|+..||.+||    
T Consensus       207 ~~~~~~~~~Di~slG~il~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----  279 (293)
T cd05053         207 FDRVYTHQSDVWSFGVLLWEIFTLGGSPYP-GIPVEELFKLLK-EG-YRMEKPQNCTQELYHLMRDCWHEVPSQRP----  279 (293)
T ss_pred             ccCCcCcccceeehhhHHHHHhcCCCCCCC-CCCHHHHHHHHH-cC-CcCCCCCCCCHHHHHHHHHHcccCcccCc----
Confidence            5544432              4 3899998 888777777776 33 34566777899999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++++++.+
T Consensus       280 -s~~eil~~  287 (293)
T cd05053         280 -TFKQLVED  287 (293)
T ss_pred             -CHHHHHHH
Confidence             55887754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.52  E-value=8.2e-14  Score=109.41  Aligned_cols=127  Identities=13%  Similarity=0.203  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHhh-c-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQ-A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~-~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      +.|++.|+.|||+ .     |++|.||++.++.   .++++|||.+.............|+..|++   |    |++...
T Consensus       119 ~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~---P----e~~~~~  188 (269)
T cd08528         119 FVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDD---KVTITDFGLAKQKQPESKLTSVVGTILYSC---P----EIVKNE  188 (269)
T ss_pred             HHHHHHHHHHhccCCceeecCCCHHHEEECCCC---cEEEecccceeecccccccccccCcccCcC---h----hhhcCC
Confidence            4699999999996 3     7999999998853   389999999987655545556788999999   9    877654


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|.+||. ..+.......+. .+...+.....++.++.+++.+||..||.+||+     +.
T Consensus       189 ~~~~~~Dv~slG~ll~~l~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~-----~~  261 (269)
T cd08528         189 PYGEKADVWAFGCILYQMCTLQPPFY-STNMLSLATKIV-EAVYEPLPEGMYSEDVTDVITSCLTPDAEARPD-----II  261 (269)
T ss_pred             CCchHHHHHHHHHHHHHHHhCCCccc-ccCHHHHHHHHh-hccCCcCCcccCCHHHHHHHHHHCCCCCccCCC-----HH
Confidence            4433              88999998 777666666666 221121122367899999999999999999994     46


Q ss_pred             hhhc
Q psy3184         151 DIKK  154 (185)
Q Consensus       151 ~ll~  154 (185)
                      ++..
T Consensus       262 e~~~  265 (269)
T cd08528         262 QVSA  265 (269)
T ss_pred             HHHH
Confidence            6543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.52  E-value=6.8e-14  Score=110.22  Aligned_cols=127  Identities=13%  Similarity=0.120  Sum_probs=93.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ...|++.||+|||+.     |+||+||+++.+.   .++++|||++..............+..|+|   |    |++...
T Consensus       117 ~~~~i~~al~~lH~~~i~H~dikp~nili~~~~---~~kl~dfgl~~~~~~~~~~~~~~~~~~y~a---p----E~~~~~  186 (270)
T cd05047         117 FAADVARGMDYLSQKQFIHRDLAARNILVGENY---VAKIADFGLSRGQEVYVKKTMGRLPVRWMA---I----ESLNYS  186 (270)
T ss_pred             HHHHHHHHHHHHHHCCEeecccccceEEEcCCC---eEEECCCCCccccchhhhccCCCCccccCC---h----HHHccC
Confidence            367899999999997     8999999998753   389999998753322111112233567999   9    876655


Q ss_pred             Ccce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .++.              + .|..||. +.+..+.+..+. .+ .....|..++.++.+++.+|+..||.+||+.     
T Consensus       187 ~~~~~~Di~slG~il~el~~~g~~pf~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~-----  258 (270)
T cd05047         187 VYTTNSDVWSYGVLLWEIVSLGGTPYC-GMTCAELYEKLP-QG-YRLEKPLNCDDEVYDLMRQCWREKPYERPSF-----  258 (270)
T ss_pred             CCCchhhHHHHHHHHHHHHcCCCCCcc-ccCHHHHHHHHh-CC-CCCCCCCcCCHHHHHHHHHHcccChhhCCCH-----
Confidence            5443              4 4999998 777777777776 22 2445666789999999999999999999944     


Q ss_pred             hhhhc
Q psy3184         150 VDIKK  154 (185)
Q Consensus       150 ~~ll~  154 (185)
                      .+++.
T Consensus       259 ~~il~  263 (270)
T cd05047         259 AQILV  263 (270)
T ss_pred             HHHHH
Confidence            77654

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.52  E-value=8.5e-14  Score=110.61  Aligned_cols=133  Identities=20%  Similarity=0.265  Sum_probs=91.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...|++.||.|||++     ||+|+||+++.+  + .++++|||.+...... .......+++.|+|   |    |++.+
T Consensus       108 ~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~--~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~a---P----E~~~~  177 (291)
T cd07844         108 FLFQLLRGLAYCHQRRVLHRDLKPQNLLISER--G-ELKLADFGLARAKSVPSKTYSNEVVTLWYRP---P----DVLLG  177 (291)
T ss_pred             HHHHHHHHHHHHHhCCeecccCCHHHEEEcCC--C-CEEECccccccccCCCCccccccccccccCC---c----HHhhc
Confidence            356999999999997     789999999885  3 4999999998754332 12223456889999   9    77654


Q ss_pred             -cCcce--------------eccCCCCCCCCC-hHHHHHHHHhc-CC---------------CccCCC-----------C
Q psy3184          84 -VGIDN--------------IFSRPPFCVMND-PMQTYNMIINV-GI---------------DKIPFP-----------K  120 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~-~~~~~~~i~~~-~~---------------~~~~~p-----------~  120 (185)
                       ..++.              ++|..||. +.+ ..+....+... +.               ....++           .
T Consensus       178 ~~~~~~~~Dv~slG~il~~l~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (291)
T cd07844         178 STEYSTSLDMWGVGCIFYEMATGRPLFP-GSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAP  256 (291)
T ss_pred             CcccCcHHHHHHHHHHHHHHHhCCCCCC-CCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhCc
Confidence             22332              78999997 443 33322222100 00               000000           1


Q ss_pred             CCC--HHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         121 HVT--RTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       121 ~~s--~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      .++  .++.+++.+||..+|.+||     ++.+++.||||
T Consensus       257 ~~~~~~~~~~li~~~L~~~p~~Rp-----s~~e~l~~~~f  291 (291)
T cd07844         257 RLDRIPHGEELALKFLQYEPKKRI-----SAAEAMKHPYF  291 (291)
T ss_pred             CCCCchhHHHHHHHHhccCccccc-----CHHHHhcCCCC
Confidence            244  8899999999999999999     66999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.52  E-value=1.3e-13  Score=107.76  Aligned_cols=127  Identities=14%  Similarity=0.163  Sum_probs=96.1

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccc----cccCCccccccCCCccccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR----LLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~----~~~gt~~y~a~~~P~~~~E   79 (185)
                      ..+.|++.|+.|||..     ||+|+||+++.+.   .++|+|||.++....+....    ...++..|+|   |    |
T Consensus        99 ~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~---~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E  168 (257)
T cd05060          99 ELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRH---QAKISDFGMSRALGAGSDYYRATTAGRWPLKWYA---P----E  168 (257)
T ss_pred             HHHHHHHHHHHHHhhcCeeccCcccceEEEcCCC---cEEeccccccceeecCCcccccccCccccccccC---H----H
Confidence            3478999999999988     7999999998753   49999999998775543221    1223467999   9    8


Q ss_pred             chhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          80 MIINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        80 ~~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ++....++.              ++ |..||. ..+..+....+. .+ .....|..++..++++|.+||..+|.+||  
T Consensus       169 ~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~cl~~~p~~Rp--  243 (257)
T cd05060         169 CINYGKFSSKSDVWSYGVTLWEAFSYGAKPYG-EMKGAEVIAMLE-SG-ERLPRPEECPQEIYSIMLSCWKYRPEDRP--  243 (257)
T ss_pred             HhcCCCCCccchHHHHHHHHHHHHcCCCCCcc-cCCHHHHHHHHH-cC-CcCCCCCCCCHHHHHHHHHHhcCChhhCc--
Confidence            776555443              54 999998 777777766666 22 35567778999999999999999999999  


Q ss_pred             CCCChhhhh
Q psy3184         145 QRGGIVDIK  153 (185)
Q Consensus       145 ~~~~~~~ll  153 (185)
                         ++.+++
T Consensus       244 ---~~~~l~  249 (257)
T cd05060         244 ---TFSELE  249 (257)
T ss_pred             ---CHHHHH
Confidence               446665

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.52  E-value=1.2e-13  Score=107.75  Aligned_cols=127  Identities=11%  Similarity=0.218  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccch
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      +.|++.||+|||++     +++|+||+++.+  + .++++|||.+..+....    ......++..|+|   |    |.+
T Consensus       103 ~~qi~~~L~~lH~~~i~H~di~p~nil~~~~--~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~---p----E~~  172 (257)
T cd05040         103 AVQIANGMRYLESKRFIHRDLAARNILLASD--D-KVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCA---P----ESL  172 (257)
T ss_pred             HHHHHHHHHHHHhCCccccccCcccEEEecC--C-EEEeccccccccccccccceecccCCCCCceecC---H----HHh
Confidence            57999999999998     789999999986  3 49999999988664421    1223457788999   9    876


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. ..+..+....+.. .......|..++.++.+++.+|+..+|.+||    
T Consensus       173 ~~~~~~~~~Di~slG~~l~el~t~g~~p~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----  246 (257)
T cd05040         173 RTRTFSHASDVWMFGVTLWEMFTYGEEPWA-GLSGSQILKKIDK-EGERLERPEACPQDIYNVMLQCWAHNPADRP----  246 (257)
T ss_pred             cccCcCchhhhHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHHh-cCCcCCCCccCCHHHHHHHHHHCCCCcccCC----
Confidence            6544443              44 999998 7777777666652 2234556667899999999999999999999    


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                       ++.+++.
T Consensus       247 -s~~~~~~  253 (257)
T cd05040         247 -TFAALRE  253 (257)
T ss_pred             -CHHHHHH
Confidence             4477654

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.52  E-value=1.8e-14  Score=116.87  Aligned_cols=135  Identities=17%  Similarity=0.225  Sum_probs=90.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-Ccc-------cccccCCccccccCCCcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKI-------LRLLSGRPPFCVMNDPMQ   76 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~-------~~~~~gt~~y~a~~~P~~   76 (185)
                      .+.||+.||+|||++     ||||+||++..+.   .+++.+++.+..... +..       .....++..|+|   |  
T Consensus       106 ~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a---P--  177 (328)
T cd08226         106 ILFGALRGLNYLHQNGYIHRNIKASHILISGDG---LVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLS---P--  177 (328)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCC---cEEEechHHHhhhhccCccccccccccccccCccCccC---h--
Confidence            467999999999997     8999999998753   388888875432211 100       111235667999   9  


Q ss_pred             cccchhcc--Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCC--------------------------
Q psy3184          77 TYNMIINV--GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID--------------------------  114 (185)
Q Consensus        77 ~~E~~~~~--~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~--------------------------  114 (185)
                        |++...  .|+.              ++|..||. +.........+. .+..                          
T Consensus       178 --E~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (328)
T cd08226         178 --ELLRQDLYGYNVKSDIYSVGITACELATGRVPFQ-DMLRTQMLLQKL-KGPPYSPLDITTFPCEESRMKNSQSGVDSG  253 (328)
T ss_pred             --hhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCC-CcChHHHHHHHh-cCCCCCCccccccchhhhhhccchhhhhcc
Confidence              776542  2222              88999998 554433332222 0000                          


Q ss_pred             -------------------ccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         115 -------------------KIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       115 -------------------~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                                         ....+..++.++.+|+++||..||.+||     ++.++++||||+.+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rp-----ta~e~l~~~~~~~~  314 (328)
T cd08226         254 IGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRP-----SASSLLSHAFFKQV  314 (328)
T ss_pred             cccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCC-----CHHHHhhCHHHHHH
Confidence                               0011134678899999999999999999     66999999999654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.52  E-value=1.1e-13  Score=111.18  Aligned_cols=128  Identities=16%  Similarity=0.157  Sum_probs=92.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     |+||+||+++.+.   .++++|||.++.......   .....+++.|+|   |    |++
T Consensus       146 i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  215 (302)
T cd05055         146 FSYQVAKGMAFLASKNCIHRDLAARNVLLTHGK---IVKICDFGLARDIMNDSNYVVKGNARLPVKWMA---P----ESI  215 (302)
T ss_pred             HHHHHHHHHHHHHHCCeehhhhccceEEEcCCC---eEEECCCcccccccCCCceeecCCCCcccccCC---H----hhh
Confidence            367999999999988     7899999998642   489999999876543321   112345778999   9    776


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. +.+....+......+ .....|..++.++.+|+.+||..+|++||    
T Consensus       216 ~~~~~~~~~DiwslGvil~el~t~g~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rp----  289 (302)
T cd05055         216 FNCVYTFESDVWSYGILLWEIFSLGSNPYP-GMPVDSKFYKLIKEG-YRMAQPEHAPAEIYDIMKTCWDADPLKRP----  289 (302)
T ss_pred             ccCCCCcHhHHHHHHHHHHHHHhCCCCCcC-CCCchHHHHHHHHcC-CcCCCCCCCCHHHHHHHHHHcCCCchhCc----
Confidence            5544443              44 899998 666555544444222 23445567899999999999999999999    


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                       ++.+++.
T Consensus       290 -t~~ell~  296 (302)
T cd05055         290 -TFKQIVQ  296 (302)
T ss_pred             -CHHHHHH
Confidence             4477764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.52  E-value=8.3e-14  Score=111.83  Aligned_cols=126  Identities=13%  Similarity=0.157  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.|++.||+|||++     |+||+||+++.+.   .++|+|||.+........   .....+++.|+|   |    |++.
T Consensus       146 ~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~---~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  215 (307)
T cd05098         146 AYQVARGMEYLASKKCIHRDLAARNVLVTEDN---VMKIADFGLARDIHHIDYYKKTTNGRLPVKWMA---P----EALF  215 (307)
T ss_pred             HHHHHHHHHHHHHCCcccccccHHheEEcCCC---cEEECCCcccccccccchhhccccCCCccceeC---h----HHhc
Confidence            78999999999997     7899999998753   489999999875533211   112234578999   9    7766


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      +..++.              ++ |..||. +.+..+....+. .+ .....|..++.++.+|+.+||..+|.+||+    
T Consensus       216 ~~~~~~~~DvwslG~~l~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps----  288 (307)
T cd05098         216 DRIYTHQSDVWSFGVLLWEIFTLGGSPYP-GVPVEELFKLLK-EG-HRMDKPSNCTNELYMMMRDCWHAVPSQRPT----  288 (307)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHcCCCCCCC-cCCHHHHHHHHH-cC-CCCCCCCcCCHHHHHHHHHHcccChhhCcC----
Confidence            544443              44 889998 888777777766 22 245667788999999999999999999994    


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                       +.+++.
T Consensus       289 -~~evl~  294 (307)
T cd05098         289 -FKQLVE  294 (307)
T ss_pred             -HHHHHH
Confidence             477764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.51  E-value=1.7e-13  Score=107.55  Aligned_cols=126  Identities=14%  Similarity=0.178  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc--ccccCCccccccCCCcccccchhc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL--RLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~--~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..|++.||.|+|+.     |++|+||++..+.   .++|+|||.+..+..+...  ....++..|++   |    |+...
T Consensus       108 ~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~---~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~~  177 (262)
T cd05071         108 AAQIASGMAYVERMNYVHRDLRAANILVGENL---VCKVADFGLARLIEDNEYTARQGAKFPIKWTA---P----EAALY  177 (262)
T ss_pred             HHHHHHHHHHHHHCCccccccCcccEEEcCCC---cEEeccCCceeeccccccccccCCcccceecC---H----hHhcc
Confidence            67999999999997     7899999998853   3899999999866543322  22345678999   9    77655


Q ss_pred             cCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          84 VGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        84 ~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ..++.              ++ |..||. +.+..+....+. .+ .....+..++.++.+++.+|+..||.+||++    
T Consensus       178 ~~~~~~~DvwslG~~l~ellt~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~----  250 (262)
T cd05071         178 GRFTIKSDVWSFGILLTELTTKGRVPYP-GMVNREVLDQVE-RG-YRMPCPPECPESLHDLMCQCWRKEPEERPTF----  250 (262)
T ss_pred             CCCCchhhHHHHHHHHHHHHcCCCCCCC-CCChHHHHHHHh-cC-CCCCCccccCHHHHHHHHHHccCCcccCCCH----
Confidence            44443              56 889998 777777777666 22 2344456789999999999999999999944    


Q ss_pred             hhhhhc
Q psy3184         149 IVDIKK  154 (185)
Q Consensus       149 ~~~ll~  154 (185)
                       ++++.
T Consensus       251 -~~~~~  255 (262)
T cd05071         251 -EYLQA  255 (262)
T ss_pred             -HHHHH
Confidence             66543

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.51  E-value=1.3e-13  Score=109.65  Aligned_cols=125  Identities=14%  Similarity=0.220  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.|++.||+|||+.     |++|.||+++.+.   .++|+|||+++......   ......++..|+|   |    |.+.
T Consensus       133 ~~~i~~~l~~LH~~~ivH~dikp~nill~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---p----E~~~  202 (290)
T cd05045         133 AWQISRGMQYLAEMKLVHRDLAARNVLVAEGR---KMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMA---I----ESLF  202 (290)
T ss_pred             HHHHHHHHHHHHHCCeehhhhhhheEEEcCCC---cEEeccccccccccCccchhcccCCCCCccccC---H----HHHc
Confidence            67999999999998     7899999998753   48999999987553321   1122345678999   9    7665


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      +..++.              ++ |..||. +.+..++...+. .+ .....|..++.++.+++.+||..+|.+||++   
T Consensus       203 ~~~~~~~~Di~slG~~l~el~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~---  276 (290)
T cd05045         203 DHIYTTQSDVWSFGVLLWEIVTLGGNPYP-GIAPERLFNLLK-TG-YRMERPENCSEEMYNLMLTCWKQEPDKRPTF---  276 (290)
T ss_pred             cCCcchHhHHHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHh-CC-CCCCCCCCCCHHHHHHHHHHccCCcccCCCH---
Confidence            544433              54 999998 888888777665 22 3455677889999999999999999999954   


Q ss_pred             Chhhhh
Q psy3184         148 GIVDIK  153 (185)
Q Consensus       148 ~~~~ll  153 (185)
                        .+++
T Consensus       277 --~~i~  280 (290)
T cd05045         277 --ADIS  280 (290)
T ss_pred             --HHHH
Confidence              6664

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.51  E-value=1.1e-13  Score=108.37  Aligned_cols=128  Identities=19%  Similarity=0.171  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      +.||+.|+.|||++     ||+|+||+++.+.   .++++|||.+....... ......|++.|+|   |    |.+...
T Consensus       112 ~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~---~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~a---P----E~~~~~  181 (267)
T cd08228         112 FVQLCSAVEHMHSRRVMHRDIKPANVFITATG---VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMS---P----ERIHEN  181 (267)
T ss_pred             HHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCC---CEEECccccceeccchhHHHhcCCCCccccC---h----hhhccC
Confidence            67899999999998     7899999998753   38999999987664432 2334678999999   9    776654


Q ss_pred             Ccce--------------eccCCCCCCCC--ChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMN--DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~--~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      .++.              ++|..||. ..  +.......+. ....+...+..++..+.+++.+||..+|.+||     +
T Consensus       182 ~~~~~~Di~slG~~l~el~~g~~p~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----~  254 (267)
T cd08228         182 GYNFKSDIWSLGCLLYEMAALQSPFY-GDKMNLFSLCQKIE-QCDYPPLPTEHYSEKLRELVSMCIYPDPDQRP-----D  254 (267)
T ss_pred             CCCchhhHHHHHHHHHHHhcCCCCCc-cccccHHHHHHHHh-cCCCCCCChhhcCHHHHHHHHHHCCCCcccCc-----C
Confidence            4433              78999996 43  2344445544 22112222245789999999999999999999     5


Q ss_pred             hhhhhcC
Q psy3184         149 IVDIKKH  155 (185)
Q Consensus       149 ~~~ll~h  155 (185)
                      +.++++.
T Consensus       255 ~~~vl~~  261 (267)
T cd08228         255 IGYVHQI  261 (267)
T ss_pred             HHHHHHH
Confidence            5887753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.51  E-value=1.5e-13  Score=110.12  Aligned_cols=128  Identities=12%  Similarity=0.037  Sum_probs=91.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.   .++|+|||+++.+.....   .....++..|||   |    |++
T Consensus       143 i~~~i~~al~~lH~~~ivH~dlkp~Nill~~~~---~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  212 (304)
T cd05096         143 VALQIASGMKYLSSLNFVHRDLATRNCLVGENL---TIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMA---W----ECI  212 (304)
T ss_pred             HHHHHHHHHHHHHHCCccccCcchhheEEcCCc---cEEECCCccceecccCceeEecCcCCCCccccC---H----HHH
Confidence            578999999999997     7899999999853   499999999876543321   223455788999   9    877


Q ss_pred             hccCcce----------------eccCCCCCCCCChHHHHHHHHh---cC--CCccCCCCCCCHHHHHHHHHHhhcCcCc
Q psy3184          82 INVGIDN----------------IFSRPPFCVMNDPMQTYNMIIN---VG--IDKIPFPKHVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        82 ~~~~~~~----------------l~g~~Pf~~~~~~~~~~~~i~~---~~--~~~~~~p~~~s~~~~~li~~~l~~dp~~  140 (185)
                      ....++.                ..+..||. ..+..+....+..   ..  ......|..++.++.+|+.+||..||.+
T Consensus       213 ~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~  291 (304)
T cd05096         213 LMGKFTTASDVWAFGVTLWEILMLCKEQPYG-ELTDEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRE  291 (304)
T ss_pred             hcCCCCchhhhHHHHHHHHHHHHccCCCCCC-cCCHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchh
Confidence            6554443                24678998 6555555443320   00  1123345668899999999999999999


Q ss_pred             ccCCCCCChhhhh
Q psy3184         141 RLGYQRGGIVDIK  153 (185)
Q Consensus       141 R~~~~~~~~~~ll  153 (185)
                      ||     +++++.
T Consensus       292 RP-----s~~~i~  299 (304)
T cd05096         292 RP-----SFSDIH  299 (304)
T ss_pred             Cc-----CHHHHH
Confidence            99     447773

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.51  E-value=1.3e-13  Score=111.99  Aligned_cols=133  Identities=18%  Similarity=0.288  Sum_probs=94.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      .+.||+.||.|||+.     +++|.||+++.+  + .++++|||.+.....  ......+++.|+|   |    |.+.+ 
T Consensus       113 ~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~--~-~~~l~dfg~~~~~~~--~~~~~~~~~~y~a---P----E~~~~~  180 (328)
T cd07856         113 FLYQILRGLKYVHSAGVVHRDLKPSNILINEN--C-DLKICDFGLARIQDP--QMTGYVSTRYYRA---P----EIMLTW  180 (328)
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCHHHEeECCC--C-CEEeCccccccccCC--CcCCCcccccccC---c----eeeecc
Confidence            468999999999998     789999999874  3 399999999875432  2344577889999   9    76543 


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHh-----------------------cCCCccCCC-----CC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIIN-----------------------VGIDKIPFP-----KH  121 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~-----------------------~~~~~~~~p-----~~  121 (185)
                      ..++.              ++|.+||. +.+....+..+..                       ........|     ..
T Consensus       181 ~~~~~~~Dv~slG~il~el~tg~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (328)
T cd07856         181 QKYDVEVDIWSAGCIFAEMLEGKPLFP-GKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKN  259 (328)
T ss_pred             CCcCcHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCC
Confidence            23333              88999998 6554332211110                       000001111     24


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                      ++.++.++|.+||..+|.+||     ++++++.||||..
T Consensus       260 ~~~~~~~li~~~l~~~P~~R~-----t~~ell~~~~~~~  293 (328)
T cd07856         260 ADPSAIDLLEKMLVFDPQKRI-----SAAEALAHPYLAP  293 (328)
T ss_pred             CCHHHHHHHHHHcCCChhhCC-----CHHHHhcCCcccc
Confidence            689999999999999999999     6699999999953

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.51  E-value=1.8e-13  Score=107.09  Aligned_cols=128  Identities=13%  Similarity=0.114  Sum_probs=95.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccc--cccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR--LLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~--~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||.|||+.     +++|.||+++.+.   .++++|||.++.........  ...++..|++   |    |++.
T Consensus       105 ~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~---~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~---p----e~~~  174 (256)
T cd05113         105 MCKDVCEGMAYLESKQFIHRDLAARNCLVDDQG---CVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSP---P----EVLL  174 (256)
T ss_pred             HHHHHHHHHHHHHhCCeeccccCcceEEEcCCC---CEEECCCccceecCCCceeecCCCccChhhCC---H----HHHh
Confidence            478999999999987     7899999998753   39999999987654332111  1234567999   9    8776


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. ..+..+....+. .+ .....|...+.++++++.+||..||.+||     
T Consensus       175 ~~~~~~~~Di~slG~~l~~l~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----  246 (256)
T cd05113         175 YSKFSSKSDVWAFGVLMWEVYSLGKMPYE-RFNNSETVEKVS-QG-LRLYRPHLASEKVYAIMYSCWHEKAEERP-----  246 (256)
T ss_pred             cCcccchhHHHHHHHHHHHHhcCCCCCcC-cCCHHHHHHHHh-cC-CCCCCCCCCCHHHHHHHHHHcCCCcccCC-----
Confidence            544443              45 899998 777777777776 33 34445667899999999999999999999     


Q ss_pred             ChhhhhcC
Q psy3184         148 GIVDIKKH  155 (185)
Q Consensus       148 ~~~~ll~h  155 (185)
                      ++.+++.+
T Consensus       247 ~~~~ll~~  254 (256)
T cd05113         247 TFQQLLSS  254 (256)
T ss_pred             CHHHHHHh
Confidence            55887753

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.50  E-value=4.3e-14  Score=127.30  Aligned_cols=135  Identities=10%  Similarity=-0.019  Sum_probs=88.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCC----------------CCCeeEEcccCceeEeecC------------
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGE----------------AGNDLFVSAEGEFQVIKDG------------   56 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~----------------~~~~i~l~d~g~~~~~~~~------------   56 (185)
                      ...||+.||.|||++     ||||+|||+....                ....++++|||.++.....            
T Consensus        85 i~~qi~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~  164 (793)
T PLN00181         85 VFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVK  164 (793)
T ss_pred             HHHHHHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccc
Confidence            467999999999998     8999999995410                1123678888877643110            


Q ss_pred             -----cccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccC
Q psy3184          57 -----KILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIP  117 (185)
Q Consensus        57 -----~~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~  117 (185)
                           ......+||+.|||   |    |++.+..|+.              ++|.+|+. ..  ......+. ....+..
T Consensus       165 ~~~~~~~~~~~~gt~~Y~A---P----E~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~-~~--~~~~~~~~-~~~~~~~  233 (793)
T PLN00181        165 KQPFPMKQILAMEMSWYTS---P----EEDNGSSSNCASDVYRLGVLLFELFCPVSSRE-EK--SRTMSSLR-HRVLPPQ  233 (793)
T ss_pred             cCCCcccccccCCCcceEC---h----hhhccCCCCchhhhhhHHHHHHHHhhCCCchh-hH--HHHHHHHH-HhhcChh
Confidence                 01112468999999   9    8777666654              66777765 22  22222222 1101111


Q ss_pred             CCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       118 ~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      . ..-..++.+++.+||..+|.+||     ++.+++.||||...
T Consensus       234 ~-~~~~~~~~~~~~~~L~~~P~~Rp-----s~~eil~h~~~~~~  271 (793)
T PLN00181        234 I-LLNWPKEASFCLWLLHPEPSCRP-----SMSELLQSEFINEP  271 (793)
T ss_pred             h-hhcCHHHHHHHHHhCCCChhhCc-----ChHHHhhchhhhhh
Confidence            1 12256678999999999999999     55999999999763

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.50  E-value=2.9e-13  Score=105.94  Aligned_cols=126  Identities=16%  Similarity=0.179  Sum_probs=93.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccc--cccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR--LLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~--~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.|++.|+.|||+.     ||+|+||+++.+.   .++|+|||.+..........  ...++..|+|   |    |.+.
T Consensus       108 ~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  177 (261)
T cd05068         108 MAAQVASGMAYLEAQNYIHRDLAARNVLVGENN---ICKVADFGLARVIKEDIYEAREGAKFPIKWTA---P----EAAL  177 (261)
T ss_pred             HHHHHHHHHHHHHhCCeeeccCCcceEEEcCCC---CEEECCcceEEEccCCcccccCCCcCceeccC---c----cccc
Confidence            367899999999997     7999999999853   38999999998765322111  1122357999   9    7765


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. +.+...+...+.+ + .....+..++.++.+++.+|+..+|.+||++   
T Consensus       178 ~~~~~~~~Di~slG~~l~el~t~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~---  251 (261)
T cd05068         178 YNRFSIKSDVWSFGILLTEIVTYGRMPYP-GMTNAEVLQQVDQ-G-YRMPCPPGCPKELYDIMLDCWKEDPDDRPTF---  251 (261)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHHc-C-CCCCCCCcCCHHHHHHHHHHhhcCcccCCCH---
Confidence            544433              55 999998 8777777777762 2 2445566789999999999999999999954   


Q ss_pred             Chhhhh
Q psy3184         148 GIVDIK  153 (185)
Q Consensus       148 ~~~~ll  153 (185)
                        +++.
T Consensus       252 --~~l~  255 (261)
T cd05068         252 --ETLQ  255 (261)
T ss_pred             --HHHH
Confidence              6654

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.50  E-value=2.2e-13  Score=107.65  Aligned_cols=122  Identities=9%  Similarity=0.094  Sum_probs=92.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccccc---ccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRL---LSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~---~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     |++|+||+++.+.   .++|+|||.++..........   ..++..|+|   |    |.+
T Consensus       114 ~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~---~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~---P----E~~  183 (279)
T cd05057         114 WCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQ---HVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMA---L----ESI  183 (279)
T ss_pred             HHHHHHHHHHHHHhCCEEecccCcceEEEcCCC---eEEECCCcccccccCcccceecCCCcccccccC---H----HHh
Confidence            468999999999998     7899999998753   489999999987654322211   223567999   9    776


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ....++.              ++ |..||. +.+..++...+. .+ .....|...+.++.+++.+|+..||.+||++
T Consensus       184 ~~~~~~~~~Di~slG~~l~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~  258 (279)
T cd05057         184 LHRIYTHKSDVWSYGVTVWELMTFGAKPYE-GIPAVEIPDLLE-KG-ERLPQPPICTIDVYMVLVKCWMIDAESRPTF  258 (279)
T ss_pred             hcCCcCchhhHHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHHh-CC-CCCCCCCCCCHHHHHHHHHHcCCChhhCCCH
Confidence            5444432              55 999998 777777777766 32 3556677789999999999999999999954

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.50  E-value=2.2e-13  Score=105.82  Aligned_cols=127  Identities=14%  Similarity=0.169  Sum_probs=96.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccc--cccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR--LLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~--~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ...|++.||.|||+.     |++|+||+++.+.   .++++|||.+..........  ...+++.|++   |    |.+.
T Consensus       108 ~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~---P----e~~~  177 (258)
T smart00219      108 FALQIARGMEYLESKNFIHRDLAARNCLVGENL---VVKISDFGLSRDLYDDDYYKKKGGKLPIRWMA---P----ESLK  177 (258)
T ss_pred             HHHHHHHHHHHHhcCCeeecccccceEEEccCC---eEEEcccCCceecccccccccccCCCcccccC---h----HHhc
Confidence            367899999999998     7999999999863   49999999998665432211  1236788999   9    7664


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |.+||. ..+.......+. .+ .....+..++.++.+++.+||..||.+||     
T Consensus       178 ~~~~~~~~Di~slG~i~~~l~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp-----  249 (258)
T smart00219      178 DGKFTSKSDVWSFGVLLWEIFTLGESPYP-GMSNEEVLEYLK-KG-YRLPKPENCPPEIYKLMLQCWAEDPEDRP-----  249 (258)
T ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHh-cC-CCCCCCCcCCHHHHHHHHHHCcCChhhCc-----
Confidence            443332              34 889998 777777777776 22 35566677899999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++.+++.
T Consensus       250 t~~~ll~  256 (258)
T smart00219      250 TFSELVE  256 (258)
T ss_pred             CHHHHHh
Confidence            5588764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG0587|consensus

Probab=99.50  E-value=6.5e-14  Score=122.68  Aligned_cols=133  Identities=18%  Similarity=0.275  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc-c
Q psy3184          12 LQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN-V   84 (185)
Q Consensus        12 ~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~-~   84 (185)
                      -+++.|+.+||.+     |+|-.|||++.+.   .+||.|||.+..++.+ ....+.+|||.|||   |    |++.- .
T Consensus       130 re~lrgl~HLH~nkviHRDikG~NiLLT~e~---~VKLvDFGvSaQldsT~grRnT~iGtP~WMA---P----EViac~e  199 (953)
T KOG0587|consen  130 REILRGLAHLHNNKVIHRDIKGQNVLLTENA---EVKLVDFGVSAQLDSTVGRRNTFIGTPYWMA---P----EVIACDE  199 (953)
T ss_pred             HHHHHHHHHHhhcceeeecccCceEEEeccC---cEEEeeeeeeeeeecccccccCcCCCccccc---c----eeeeccc
Confidence            4677899999987     8999999999874   2999999999877665 35567899999999   9    87763 2


Q ss_pred             C----cce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          85 G----IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        85 ~----~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .    |+.              .-|.+|+. ..-+...+..|..+......-|..+|.++-+||..||.+|..+||    
T Consensus       200 ~~d~tyd~R~D~WsLGITaIEladG~PPl~-DmHPmraLF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP----  274 (953)
T KOG0587|consen  200 SPDATYDYRSDLWSLGITAIEMAEGAPPLC-DMHPMRALFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRP----  274 (953)
T ss_pred             CCCCCcccccchhhccceeehhcCCCCCcc-CcchhhhhccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCc----
Confidence            2    222              67889998 444444444444212122334567999999999999999999999    


Q ss_pred             CChhhhhcCCCCCC
Q psy3184         147 GGIVDIKKHKWFQG  160 (185)
Q Consensus       147 ~~~~~ll~hp~f~~  160 (185)
                       ...+++.|||++.
T Consensus       275 -~~~~ll~hpFi~e  287 (953)
T KOG0587|consen  275 -STEELLKHPFITE  287 (953)
T ss_pred             -chhhhccCCcccc
Confidence             5599999999973

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.50  E-value=1.8e-13  Score=106.95  Aligned_cols=127  Identities=15%  Similarity=0.202  Sum_probs=95.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc-cccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI-LRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~-~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...||+.||+|||+.     |++|.||+++.+.   .++++|||.+........ .....++..|++   |    |.+..
T Consensus       109 ~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~---~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~---P----E~~~~  178 (261)
T cd05148         109 MACQVAEGMAYLEEQNSIHRDLAARNILVGEDL---VCKVADFGLARLIKEDVYLSSDKKIPYKWTA---P----EAASH  178 (261)
T ss_pred             HHHHHHHHHHHHHHCCeeccccCcceEEEcCCc---eEEEccccchhhcCCccccccCCCCceEecC---H----HHHcc
Confidence            357999999999998     7899999998863   389999999876543321 223345678999   9    87765


Q ss_pred             cCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          84 VGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        84 ~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ..++.              ++ |..||. +.+..+.+..+. .+ .....|..++.++.+++.+||..||.+||+.    
T Consensus       179 ~~~~~~~DiwslG~~l~~l~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~----  251 (261)
T cd05148         179 GTFSTKSDVWSFGILLYEMFTYGQVPYP-GMNNHEVYDQIT-AG-YRMPCPAKCPQEIYKIMLECWAAEPEDRPSF----  251 (261)
T ss_pred             CCCCchhhHHHHHHHHHHHHcCCCCCCC-cCCHHHHHHHHH-hC-CcCCCCCCCCHHHHHHHHHHcCCCchhCcCH----
Confidence            54443              44 899998 777777777766 22 3455667889999999999999999999944    


Q ss_pred             hhhhhc
Q psy3184         149 IVDIKK  154 (185)
Q Consensus       149 ~~~ll~  154 (185)
                       .+++.
T Consensus       252 -~~l~~  256 (261)
T cd05148         252 -KALRE  256 (261)
T ss_pred             -HHHHH
Confidence             66653

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.50  E-value=2e-13  Score=107.06  Aligned_cols=130  Identities=14%  Similarity=0.167  Sum_probs=95.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCC--CCCeeEEcccCceeEeecCcc---cccccCCccccccCCCccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGE--AGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~--~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      -+.|++.|+.|||+.     |++|+||+++.+.  ....++++|||.++.......   .....++..|+|   |    |
T Consensus       111 ~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E  183 (269)
T cd05044         111 ICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMA---P----E  183 (269)
T ss_pred             HHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccC---H----H
Confidence            357999999999987     7899999998753  122489999999876533211   112345678999   9    7


Q ss_pred             chhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          80 MIINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        80 ~~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      .+.+..++.              ++ |..||. ..+..+....+.. + ..+..+..++..+.++|.+||..+|.+||  
T Consensus       184 ~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp--  258 (269)
T cd05044         184 SLLDGKFTTQSDVWSFGVLMWEILTLGQQPYP-ALNNQEVLQHVTA-G-GRLQKPENCPDKIYQLMTNCWAQDPSERP--  258 (269)
T ss_pred             HHccCCcccchhHHHHHHHHHHHHHcCCCCCc-ccCHHHHHHHHhc-C-CccCCcccchHHHHHHHHHHcCCCcccCC--
Confidence            765544333              54 999998 7776676666652 2 35566677899999999999999999999  


Q ss_pred             CCCChhhhhc
Q psy3184         145 QRGGIVDIKK  154 (185)
Q Consensus       145 ~~~~~~~ll~  154 (185)
                         +++++++
T Consensus       259 ---~~~~i~~  265 (269)
T cd05044         259 ---TFDRIQE  265 (269)
T ss_pred             ---CHHHHHH
Confidence               4477653

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.50  E-value=1.4e-13  Score=107.94  Aligned_cols=126  Identities=17%  Similarity=0.159  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      +.||+.|+.|||++     +|+|+||+++.+.   .++++|||.+....... ......|+..|+|   |    |.+...
T Consensus       112 ~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~a---p----e~~~~~  181 (267)
T cd08229         112 FVQLCSALEHMHSRRVMHRDIKPANVFITATG---VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMS---P----ERIHEN  181 (267)
T ss_pred             HHHHHHHHHHHHHCCeecCCCCHHHEEEcCCC---CEEECcchhhhccccCCcccccccCCcCccC---H----HHhcCC
Confidence            67899999999997     7899999998753   49999999887654332 2334678999999   9    877655


Q ss_pred             Ccce--------------eccCCCCCCCCCh--HHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDP--MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~--~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      .++.              ++|..||. +.+.  ......+. ....+...+..++.++++++.+|+..||.+||++    
T Consensus       182 ~~~~~~Dv~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~----  255 (267)
T cd08229         182 GYNFKSDIWSLGCLLYEMAALQSPFY-GDKMNLYSLCKKIE-QCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDI----  255 (267)
T ss_pred             CccchhhHHHHHHHHHHHHhCCCCcc-cccchHHHHhhhhh-cCCCCCCCcccccHHHHHHHHHhcCCCcccCCCH----
Confidence            4443              78999997 4432  34444444 2211222224588999999999999999999954    


Q ss_pred             hhhhh
Q psy3184         149 IVDIK  153 (185)
Q Consensus       149 ~~~ll  153 (185)
                       .+++
T Consensus       256 -~~i~  259 (267)
T cd08229         256 -TYVY  259 (267)
T ss_pred             -HHHH
Confidence             6554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.49  E-value=2.2e-13  Score=106.53  Aligned_cols=126  Identities=17%  Similarity=0.195  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCcccccchhc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..|++.||+|||+.     |++|.||+++.+.   .++++|||.+........  .....++..|+|   |    |++..
T Consensus       108 ~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~---p----e~~~~  177 (260)
T cd05067         108 AAQIAEGMAFIERKNYIHRDLRAANILVSETL---CCKIADFGLARLIEDNEYTAREGAKFPIKWTA---P----EAINY  177 (260)
T ss_pred             HHHHHHHHHHHhcCCeecccccHHhEEEcCCC---CEEEccCcceeecCCCCcccccCCcccccccC---H----HHhcc
Confidence            56999999999987     7899999999853   389999999976653221  123345678999   9    87765


Q ss_pred             cCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          84 VGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        84 ~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ..++.              ++ |.+||. +.+..+....+. .+ .....|..++.++.+++.+||..+|++||++    
T Consensus       178 ~~~~~~~Di~slG~~l~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~----  250 (260)
T cd05067         178 GTFTIKSDVWSFGILLTEIVTYGRIPYP-GMTNPEVIQNLE-RG-YRMPRPDNCPEELYELMRLCWKEKPEERPTF----  250 (260)
T ss_pred             CCcCcccchHHHHHHHHHHHhCCCCCCC-CCChHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHccCChhhCCCH----
Confidence            44432              55 999998 777777766665 22 2445667789999999999999999999944    


Q ss_pred             hhhhhc
Q psy3184         149 IVDIKK  154 (185)
Q Consensus       149 ~~~ll~  154 (185)
                       ++++.
T Consensus       251 -~~l~~  255 (260)
T cd05067         251 -EYLRS  255 (260)
T ss_pred             -HHHHH
Confidence             66653

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.49  E-value=2.1e-13  Score=107.23  Aligned_cols=127  Identities=12%  Similarity=0.132  Sum_probs=95.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc--ccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL--RLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~--~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     |+||.||+++.+.   .++++|||...........  ....++..|+|   |    |++.
T Consensus       112 ~~~~i~~al~~lH~~~iiH~dikp~nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  181 (266)
T cd05064         112 MLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDL---VCKISGFRRLQEDKSEAIYTTMSGKSPVLWAA---P----EAIQ  181 (266)
T ss_pred             HHHHHHHHHHHHHHCCEeeccccHhhEEEcCCC---cEEECCCcccccccccchhcccCCCCceeecC---H----HHHh
Confidence            367899999999997     7899999998853   3899999977644322211  12345678999   9    8776


Q ss_pred             ccCcce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              + +|..||. +.+..+....+. .+ .....|..++..+.+++.+|+..+|.+||++   
T Consensus       182 ~~~~~~~~Di~slG~~l~ell~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~c~~~~p~~RP~~---  255 (266)
T cd05064         182 YHHFSSASDVWSFGIVMWEVMSYGERPYW-DMSGQDVIKAVE-DG-FRLPAPRNCPNLLHQLMLDCWQKERGERPRF---  255 (266)
T ss_pred             hCCccchhHHHHHHHHHHHHhcCCCCCcC-cCCHHHHHHHHH-CC-CCCCCCCCCCHHHHHHHHHHcCCCchhCCCH---
Confidence            655553              3 5999998 777777777766 33 3445677889999999999999999999944   


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                        ++|++
T Consensus       256 --~~i~~  260 (266)
T cd05064         256 --SQIHS  260 (266)
T ss_pred             --HHHHH
Confidence              77654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.49  E-value=2e-13  Score=110.97  Aligned_cols=128  Identities=12%  Similarity=0.152  Sum_probs=96.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     ||||+||++..+.   .++|+|||.++.......   .....++..|+|   |    |++
T Consensus       139 ~~~qi~~al~~LH~~givH~dlkp~Nill~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  208 (334)
T cd05100         139 CAYQVARGMEYLASQKCIHRDLAARNVLVTEDN---VMKIADFGLARDVHNIDYYKKTTNGRLPVKWMA---P----EAL  208 (334)
T ss_pred             HHHHHHHHHHHHHHCCeeccccccceEEEcCCC---cEEECCcccceecccccccccccCCCcCceEcC---H----HHh
Confidence            367999999999998     7899999998753   489999999876543221   112334567999   9    777


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. +.+..+....+. .+ .....|..++.++.+++.+|+..+|.+||    
T Consensus       209 ~~~~~~~~~Di~slG~il~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~cl~~~p~~Rp----  281 (334)
T cd05100         209 FDRVYTHQSDVWSFGVLLWEIFTLGGSPYP-GIPVEELFKLLK-EG-HRMDKPANCTHELYMIMRECWHAVPSQRP----  281 (334)
T ss_pred             ccCCcCchhhhHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHcccChhhCc----
Confidence            6554443              44 889998 888888877776 22 34456677899999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.+++.+
T Consensus       282 -s~~ell~~  289 (334)
T cd05100         282 -TFKQLVED  289 (334)
T ss_pred             -CHHHHHHH
Confidence             44877765

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.49  E-value=2.5e-13  Score=106.11  Aligned_cols=127  Identities=14%  Similarity=0.145  Sum_probs=95.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccc--cccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR--LLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~--~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.|+.|||+.     |++|+||+++.+  + .++++|||.++.........  ...++..|+|   |    |.+.
T Consensus       105 i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~--~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~---P----e~~~  174 (256)
T cd05059         105 MCSDVCEAMEYLESNGFIHRDLAARNCLVGED--N-VVKVSDFGLARYVLDDQYTSSQGTKFPVKWAP---P----EVFD  174 (256)
T ss_pred             HHHHHHHHHHHHHHCCcccccccHhhEEECCC--C-cEEECCcccceecccccccccCCCCCCccccC---H----HHhc
Confidence            368999999999997     789999999875  3 39999999987654322111  1123457999   9    8776


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. ..+..+....+. .+ .....|..++.++.+++.+||..+|++||     
T Consensus       175 ~~~~~~~~Di~slG~il~~l~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rp-----  246 (256)
T cd05059         175 YSRFSSKSDVWSFGVLMWEVFSEGKMPYE-RFSNSEVVESVS-AG-YRLYRPKLAPTEVYTIMYSCWHEKPEDRP-----  246 (256)
T ss_pred             cCCCCchhhHHHHHHHHHHHhccCCCCCC-CCCHHHHHHHHH-cC-CcCCCCCCCCHHHHHHHHHHhcCChhhCc-----
Confidence            555543              45 899998 777777777766 22 34566677899999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++.++++
T Consensus       247 t~~~~l~  253 (256)
T cd05059         247 AFKKLLS  253 (256)
T ss_pred             CHHHHHH
Confidence            5588765

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.49  E-value=2.1e-13  Score=107.72  Aligned_cols=127  Identities=13%  Similarity=0.165  Sum_probs=94.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     +++|.||++..+.   .++++|||+++.+.....   .....++..|+|   |    |++
T Consensus       122 i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~---~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~a---p----E~~  191 (280)
T cd05043         122 MAIQIACGMSYLHKRGVIHKDIAARNCVIDEEL---QVKITDNALSRDLFPMDYHCLGDNENRPVKWMA---L----ESL  191 (280)
T ss_pred             HHHHHHHHHHHHHHCCEeecccCHhhEEEcCCC---cEEECCCCCcccccCCceEEeCCCCCcchhccC---H----HHH
Confidence            367999999999998     7899999998753   489999999876533221   122345677999   9    877


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. ..+..+....+. .+ ..+..+..+++++.+++.+|+..||.+||++  
T Consensus       192 ~~~~~~~~~Di~slG~~l~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~--  266 (280)
T cd05043         192 VNKEYSSASDVWSFGVLLWELMTLGQTPYV-EIDPFEMAAYLK-DG-YRLAQPINCPDELFAVMACCWALDPEERPSF--  266 (280)
T ss_pred             hcCCCCchhhHHHhHHHHHHHhcCCCCCcC-cCCHHHHHHHHH-cC-CCCCCCCcCCHHHHHHHHHHcCCChhhCCCH--
Confidence            6554443              44 999998 777777776665 22 2344455678999999999999999999954  


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                         .+++.
T Consensus       267 ---~~~~~  271 (280)
T cd05043         267 ---SQLVQ  271 (280)
T ss_pred             ---HHHHH
Confidence               77653

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.49  E-value=3.4e-13  Score=106.04  Aligned_cols=127  Identities=15%  Similarity=0.190  Sum_probs=95.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.|++.||+|||+.     |++|+||+++.+.   .++++|||.++.......  .....+++.|+|   |    |.+.
T Consensus       112 ~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~---~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  181 (270)
T cd05056         112 YSYQLSTALAYLESKRFVHRDIAARNVLVSSPD---CVKLGDFGLSRYLEDESYYKASKGKLPIKWMA---P----ESIN  181 (270)
T ss_pred             HHHHHHHHHHHHHhCCeeccccChheEEEecCC---CeEEccCceeeecccccceecCCCCccccccC---h----hhhc
Confidence            367999999999998     7999999998853   399999999876543321  112234567999   9    8776


Q ss_pred             ccCcce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              + .|..||. +.+..+....+. .+ ..+..|..++.++.+++.+|+..+|.+||     
T Consensus       182 ~~~~~~~~Di~slG~il~el~~~g~~pf~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~P~~Rp-----  253 (270)
T cd05056         182 FRRFTSASDVWMFGVCMWEILMLGVKPFQ-GVKNNDVIGRIE-NG-ERLPMPPNCPPTLYSLMTKCWAYDPSKRP-----  253 (270)
T ss_pred             cCCCCchhhhHHHHHHHHHHHHcCCCCCC-CCCHHHHHHHHH-cC-CcCCCCCCCCHHHHHHHHHHcCCChhhCc-----
Confidence            555443              3 4999998 777666666666 22 35567778899999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++.+++.
T Consensus       254 t~~~~~~  260 (270)
T cd05056         254 RFTELKA  260 (270)
T ss_pred             CHHHHHH
Confidence            4477654

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.49  E-value=3.3e-13  Score=105.20  Aligned_cols=124  Identities=16%  Similarity=0.204  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhccC
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVG   85 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~~   85 (185)
                      +.|++.|+.|||++     |++|+||+++.+.   .++|+|||.+......  ......+..|+|   |    |++....
T Consensus       106 ~~qi~~al~~lH~~~~~H~dl~p~nili~~~~---~~kl~Dfg~~~~~~~~--~~~~~~~~~y~~---p----e~~~~~~  173 (254)
T cd05083         106 SLDVAEGMEYLESKKLVHRDLAARNILVSEDG---VAKVSDFGLARVGSMG--VDNSKLPVKWTA---P----EALKHKK  173 (254)
T ss_pred             HHHHHHHHHHHHhCCeeccccCcceEEEcCCC---cEEECCCccceecccc--CCCCCCCceecC---H----HHhccCC
Confidence            67999999999998     7899999998753   3899999998765332  122334567999   9    7765544


Q ss_pred             cce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          86 IDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        86 ~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      ++.              ++ |.+||. ..+..+....+. .+ ..+..+..++.++.+++.+||..+|.+||++     +
T Consensus       174 ~~~~~Dv~slG~~l~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~-----~  245 (254)
T cd05083         174 FSSKSDVWSYGVLLWEVFSYGRAPYP-KMSLKEVKECVE-KG-YRMEPPEGCPADVYVLMTSCWETEPKKRPSF-----H  245 (254)
T ss_pred             cCchhhHHHHHHHHHHHHhCCCCCCc-cCCHHHHHHHHh-CC-CCCCCCCcCCHHHHHHHHHHcCCChhhCcCH-----H
Confidence            433              43 999998 777777776665 33 2444566789999999999999999999954     6


Q ss_pred             hhhc
Q psy3184         151 DIKK  154 (185)
Q Consensus       151 ~ll~  154 (185)
                      +++.
T Consensus       246 ~l~~  249 (254)
T cd05083         246 KLRE  249 (254)
T ss_pred             HHHH
Confidence            6653

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.49  E-value=2.4e-13  Score=105.82  Aligned_cols=126  Identities=16%  Similarity=0.161  Sum_probs=91.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccc---cccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR---LLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~---~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ...|++.||.|||++     |++|+||+++.+.   .++++|||.+.....+....   ...++..|+|   |    |.+
T Consensus        99 ~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  168 (252)
T cd05084          99 MVENAAAGMEYLESKHCIHRDLAARNCLVTEKN---VLKISDFGMSREEEDGVYASTGGMKQIPVKWTA---P----EAL  168 (252)
T ss_pred             HHHHHHHHHHHHHhCCccccccchheEEEcCCC---cEEECccccCcccccccccccCCCCCCceeecC---c----hhh
Confidence            368999999999987     7899999998753   39999999987654321111   1122456999   9    777


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. ..+.......+.+  ......|..++.++.+|+.+||..+|.+||    
T Consensus       169 ~~~~~~~~~Dv~slG~il~e~~~~~~~p~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----  241 (252)
T cd05084         169 NYGRYSSESDVWSFGILLWEAFSLGAVPYA-NLSNQQTREAIEQ--GVRLPCPELCPDAVYRLMERCWEYDPGQRP----  241 (252)
T ss_pred             cCCCCChHHHHHHHHHHHHHHHhCCCCCcc-ccCHHHHHHHHHc--CCCCCCcccCCHHHHHHHHHHcCCChhhCc----
Confidence            6554443              43 889997 6666666655552  135566778899999999999999999999    


Q ss_pred             CChhhhh
Q psy3184         147 GGIVDIK  153 (185)
Q Consensus       147 ~~~~~ll  153 (185)
                       ++.+++
T Consensus       242 -s~~~~~  247 (252)
T cd05084         242 -SFSTVH  247 (252)
T ss_pred             -CHHHHH
Confidence             447765

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.49  E-value=2.9e-13  Score=105.52  Aligned_cols=125  Identities=17%  Similarity=0.166  Sum_probs=94.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.|+.|||+.     ||+|+||+++.+.   .++++|||.++.......  ...++..|+|   |    |.+...
T Consensus       107 ~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~---~~~l~d~g~~~~~~~~~~--~~~~~~~~~a---p----e~~~~~  174 (256)
T cd05039         107 FALDVCEGMEYLEEKNFVHRDLAARNVLVSEDL---VAKVSDFGLAKEASQGQD--SGKLPVKWTA---P----EALREK  174 (256)
T ss_pred             HHHHHHHHHHHHHhCCccchhcccceEEEeCCC---CEEEcccccccccccccc--cCCCcccccC---c----hhhcCC
Confidence            468999999999998     7899999998753   389999999986633221  3344567999   9    766544


Q ss_pred             Ccce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .++.              + .|..||. ..+...+...+. .+ .....|..+++++.++|.+||..+|.+||     ++
T Consensus       175 ~~~~~~Di~slG~il~~l~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----~~  246 (256)
T cd05039         175 KFSTKSDVWSFGILLWEIYSFGRVPYP-RIPLKDVVPHVE-KG-YRMEAPEGCPPEVYKVMKDCWELDPAKRP-----TF  246 (256)
T ss_pred             cCCcHHHHHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHh-cC-CCCCCccCCCHHHHHHHHHHhccChhhCc-----CH
Confidence            3332              3 3999998 777777776666 22 24456677899999999999999999999     55


Q ss_pred             hhhhc
Q psy3184         150 VDIKK  154 (185)
Q Consensus       150 ~~ll~  154 (185)
                      .+++.
T Consensus       247 ~~l~~  251 (256)
T cd05039         247 KQLRE  251 (256)
T ss_pred             HHHHH
Confidence            77764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>KOG0668|consensus

Probab=99.48  E-value=6.4e-14  Score=106.95  Aligned_cols=138  Identities=22%  Similarity=0.276  Sum_probs=100.8

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ....|++.||.|||++     |+||.|++|+...+  .++|+|+|++.....+......+.+..|-.   |    |++..
T Consensus       136 yY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~r--kLrlIDWGLAEFYHp~~eYnVRVASRyfKG---P----ELLVd  206 (338)
T KOG0668|consen  136 YYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELR--KLRLIDWGLAEFYHPGKEYNVRVASRYFKG---P----ELLVD  206 (338)
T ss_pred             HHHHHHHHHHhHHHhcCcccccCCcceeeechhhc--eeeeeecchHhhcCCCceeeeeeehhhcCC---c----hheee
Confidence            3478999999999998     78999999998643  599999999988877777778888889999   9    87765


Q ss_pred             -cCcce--------------eccCCCCCCCCC-hHHHHHHHHh-cCCC---------ccCCC------------------
Q psy3184          84 -VGIDN--------------IFSRPPFCVMND-PMQTYNMIIN-VGID---------KIPFP------------------  119 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~-~~~~~~~i~~-~~~~---------~~~~p------------------  119 (185)
                       +.|+.              +..+-||..|.+ ..++. +|.. -|.+         .+..+                  
T Consensus       207 y~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLV-kIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~F  285 (338)
T KOG0668|consen  207 YQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLV-KIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSRF  285 (338)
T ss_pred             chhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHH-HHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHHh
Confidence             33443              555666643544 44432 2210 0100         01111                  


Q ss_pred             ------CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         120 ------KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       120 ------~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                            .-+++++.||+.++|..|.++|+     ++.+.+.||||..+
T Consensus       286 i~~~n~hl~~peaiDlldklLrYDHqeRl-----TakEam~HpyF~~~  328 (338)
T KOG0668|consen  286 INSENQHLVSPEAIDLLDKLLRYDHQERL-----TAKEAMAHPYFAPV  328 (338)
T ss_pred             CCccccccCChHHHHHHHHHHhhcccccc-----chHHHhcCchHHHH
Confidence                  23679999999999999999999     55999999999754

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.48  E-value=2.7e-13  Score=106.35  Aligned_cols=127  Identities=13%  Similarity=0.119  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-Ccccc--cccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILR--LLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~--~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.|++.|++|||++     |++|.||+++.+.   .++++|||.+..... .....  ...+++.|+|   |    |.+.
T Consensus       112 ~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~---P----e~~~  181 (266)
T cd05033         112 LRGIASGMKYLSEMNYVHRDLAARNILVNSNL---VCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTA---P----EAIA  181 (266)
T ss_pred             HHHHHHHHHHHHhCCcccCCCCcceEEEcCCC---CEEECccchhhcccccccceeccCCCCCccccC---h----hhhc
Confidence            57899999999998     7899999998753   389999999987642 11111  2234578999   9    7776


Q ss_pred             ccCcce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              + .|..||. .....+....+. .+ .....|..++..+.+++.+|+..+|.+||     
T Consensus       182 ~~~~~~~~Dv~slG~~l~~l~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----  253 (266)
T cd05033         182 YRKFTSASDVWSFGIVMWEVMSYGERPYW-DMSNQDVIKAVE-DG-YRLPPPMDCPSALYQLMLDCWQKDRNERP-----  253 (266)
T ss_pred             cCCCccccchHHHHHHHHHHHccCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHcCCCcccCc-----
Confidence            544443              4 3999998 666666666666 22 24455667899999999999999999999     


Q ss_pred             ChhhhhcC
Q psy3184         148 GIVDIKKH  155 (185)
Q Consensus       148 ~~~~ll~h  155 (185)
                      ++++++++
T Consensus       254 ~~~ei~~~  261 (266)
T cd05033         254 TFSQIVST  261 (266)
T ss_pred             CHHHHHHH
Confidence            55877653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>KOG0662|consensus

Probab=99.48  E-value=1.5e-13  Score=101.60  Aligned_cols=135  Identities=21%  Similarity=0.260  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc-
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      ..|++.|+.+||+.     |+||.|++|+++.   .++++|||+++..+-.. +.+.-+-|..|.+   |    .++-+ 
T Consensus       107 mlqllrgl~fchshnvlhrdlkpqnllin~ng---elkladfglarafgipvrcysaevvtlwyrp---p----dvlfga  176 (292)
T KOG0662|consen  107 MLQLLRGLGFCHSHNVLHRDLKPQNLLINRNG---ELKLADFGLARAFGIPVRCYSAEVVTLWYRP---P----DVLFGA  176 (292)
T ss_pred             HHHHHhhhhhhhhhhhhhccCCcceEEeccCC---cEEecccchhhhcCCceEeeeceeeeeeccC---c----ceeeee
Confidence            67999999999987     8999999999974   39999999998776543 5555677899999   9    76654 


Q ss_pred             cCcce---------------eccCCCCCCCCChHHHHHHHHhc-CC---C-------------ccCCC---------CCC
Q psy3184          84 VGIDN---------------IFSRPPFCVMNDPMQTYNMIINV-GI---D-------------KIPFP---------KHV  122 (185)
Q Consensus        84 ~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~-~~---~-------------~~~~p---------~~~  122 (185)
                      +-|+.               -.|++-|. +.+..+.+.+|... |.   +             .+.+|         +.+
T Consensus       177 kly~tsidmwsagcifaelanagrplfp-g~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypattswsqivp~l  255 (292)
T KOG0662|consen  177 KLYSTSIDMWSAGCIFAELANAGRPLFP-GNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPATTSWSQIVPKL  255 (292)
T ss_pred             ehhccchHhhhcchHHHHHhhcCCCCCC-CCcHHHHHHHHHHHhCCCccccCCccccCCCCcccCCccccchHHHHhhhh
Confidence            33443               67899999 88877777666521 10   0             01222         235


Q ss_pred             CHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       123 s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      +...++++.++|.-+|.+|+     ++++.++||||...
T Consensus       256 ns~grdllqkll~cnp~qri-----saeaalqhpyf~d~  289 (292)
T KOG0662|consen  256 NSTGRDLLQKLLKCNPAQRI-----SAEAALQHPYFSDF  289 (292)
T ss_pred             cchhHHHHHHHhccCccccc-----CHHHHhcCcccccc
Confidence            67789999999999999999     77999999999764

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.48  E-value=2.7e-13  Score=106.60  Aligned_cols=127  Identities=13%  Similarity=0.175  Sum_probs=95.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.|++.|++|||+.     |+||.||+++.+.   .++++|||.++......   ......+++.|++   |    |.+
T Consensus       118 ~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~---p----e~~  187 (273)
T cd05074         118 FMIDIASGMEYLSSKNFIHRDLAARNCMLNENM---TVCVADFGLSKKIYSGDYYRQGCASKLPVKWLA---L----ESL  187 (273)
T ss_pred             HHHHHHHHHHHHHhCCEeecccchhhEEEcCCC---CEEECcccccccccCCcceecCCCccCchhhcC---H----hHH
Confidence            368999999999998     7999999998753   38999999987654322   1223345678999   9    776


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |.+||. +.+..+....+. .+ .....+...+.++.+++.+||..+|.+||    
T Consensus       188 ~~~~~~~~sDi~slG~il~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp----  260 (273)
T cd05074         188 ADNVYTTHSDVWAFGVTMWEIMTRGQTPYA-GVENSEIYNYLI-KG-NRLKQPPDCLEDVYELMCQCWSPEPKCRP----  260 (273)
T ss_pred             hcCccchhhhhHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHH-cC-CcCCCCCCCCHHHHHHHHHHcCCChhhCc----
Confidence            6544433              44 899998 787777777766 22 34555667889999999999999999999    


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                       ++.+++.
T Consensus       261 -s~~~~~~  267 (273)
T cd05074         261 -SFQHLRD  267 (273)
T ss_pred             -CHHHHHH
Confidence             5577664

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.48  E-value=3.2e-13  Score=104.88  Aligned_cols=126  Identities=17%  Similarity=0.170  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc---ccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL---RLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~---~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.|++.||.|||++     |++|+||+++.+.   .++++|||.+.....+...   ....++..|+|   |    |.+.
T Consensus        99 ~~~~~~~l~~lH~~~i~h~di~p~nili~~~~---~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~  168 (251)
T cd05041          99 SLDAAAGMEYLESKNCIHRDLAARNCLVGENN---VLKISDFGMSREEEGGIYTVSDGLKQIPIKWTA---P----EALN  168 (251)
T ss_pred             HHHHHHHHHHHHhCCEehhhcCcceEEEcCCC---cEEEeeccccccccCCcceeccccCcceeccCC---h----Hhhc
Confidence            56889999999987     8899999998753   3999999998765432211   12234567999   9    8766


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      +..++.              ++ |..||. +.+.......+. .+ .....|..++.++.+++.+||..+|.+||     
T Consensus       169 ~~~~~~~~Di~slG~i~~~l~t~~~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----  240 (251)
T cd05041         169 YGRYTSESDVWSYGILLWETFSLGDTPYP-GMSNQQTRERIE-SG-YRMPAPQLCPEEIYRLMLQCWAYDPENRP-----  240 (251)
T ss_pred             cCCCCcchhHHHHHHHHHHHHhccCCCCc-cCCHHHHHHHHh-cC-CCCCCCccCCHHHHHHHHHHhccChhhCc-----
Confidence            554443              54 889998 776666666665 22 34556778899999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++++++.
T Consensus       241 ~~~ell~  247 (251)
T cd05041         241 SFSEIYN  247 (251)
T ss_pred             CHHHHHH
Confidence            5588764

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.47  E-value=5.3e-13  Score=103.59  Aligned_cols=126  Identities=14%  Similarity=0.153  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc--ccccCCccccccCCCcccccchhc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL--RLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~--~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..|++.||.|+|++     |++|+||+++.+.   .++++|||.+.....+...  ....++..|+|   |    |++..
T Consensus        99 ~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~---~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  168 (250)
T cd05085          99 ALDAAAGMAYLESKNCIHRDLAARNCLVGENN---VLKISDFGMSRQEDDGIYSSSGLKQIPIKWTA---P----EALNY  168 (250)
T ss_pred             HHHHHHHHHHHHhCCeeecccChheEEEcCCC---eEEECCCccceeccccccccCCCCCCcccccC---H----HHhcc
Confidence            57899999999987     7899999998753   4899999998755433211  12344567999   9    87765


Q ss_pred             cCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          84 VGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        84 ~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ..++.              ++ |..||. +.+.......+. .+ .....|..++.++.+++.+|+..+|++||     +
T Consensus       169 ~~~~~~~Di~slG~ll~~~~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----~  240 (250)
T cd05085         169 GRYSSESDVWSYGILLWETFSLGVCPYP-GMTNQQAREQVE-KG-YRMSCPQKCPDDVYKVMQRCWDYKPENRP-----K  240 (250)
T ss_pred             CCCCchhHHHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHcccCcccCC-----C
Confidence            44432              44 899998 777666666665 22 34566777899999999999999999999     4


Q ss_pred             hhhhhc
Q psy3184         149 IVDIKK  154 (185)
Q Consensus       149 ~~~ll~  154 (185)
                      +.++..
T Consensus       241 ~~~l~~  246 (250)
T cd05085         241 FSELQK  246 (250)
T ss_pred             HHHHHH
Confidence            477654

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>KOG0193|consensus

Probab=99.47  E-value=4.8e-14  Score=119.45  Aligned_cols=128  Identities=15%  Similarity=0.155  Sum_probs=98.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec---CcccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD---GKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~---~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .|-||+.|+.|||.+     |||..||+++.+.   .|+|.|||++..-.-   ..-.....|..-|||   |    |++
T Consensus       493 IAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~---kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmA---P----EvI  562 (678)
T KOG0193|consen  493 IAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDL---KVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMA---P----EVI  562 (678)
T ss_pred             HHHHHHHhhhhhhhhhhhhhhccccceEEccCC---cEEEecccceeeeeeeccccccCCCccchhhhc---H----HHH
Confidence            488999999999997     8999999999974   399999999864332   223344578889999   9    777


Q ss_pred             hc---cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccC---CCCCCCHHHHHHHHHHhhcCcCcc
Q psy3184          82 IN---VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIP---FPKHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        82 ~~---~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~---~p~~~s~~~~~li~~~l~~dp~~R  141 (185)
                      ..   .+|+.              ++|..||. ..+.++++.++- .|...+.   .-.....+.++|+..|+..++++|
T Consensus       563 Rmqd~nPfS~qSDVYaFGiV~YELltg~lPys-i~~~dqIifmVG-rG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eR  640 (678)
T KOG0193|consen  563 RMQDDNPFSFQSDVYAFGIVWYELLTGELPYS-IQNRDQIIFMVG-RGYLMPDLSKIRSNCPKAMKRLLSDCWKFDREER  640 (678)
T ss_pred             hhcccCCCCcccchhhhhHHHHHHHhCcCCcC-CCChhheEEEec-ccccCccchhhhccCHHHHHHHHHHHHhcCcccC
Confidence            63   24443              99999999 999999888877 5522221   113467799999999999999999


Q ss_pred             cCCCCCChhhhhc
Q psy3184         142 LGYQRGGIVDIKK  154 (185)
Q Consensus       142 ~~~~~~~~~~ll~  154 (185)
                      |.+     .+|+.
T Consensus       641 P~F-----~~il~  648 (678)
T KOG0193|consen  641 PLF-----PQLLS  648 (678)
T ss_pred             ccH-----HHHHH
Confidence            965     66554

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.47  E-value=4.9e-13  Score=106.39  Aligned_cols=129  Identities=8%  Similarity=0.056  Sum_probs=92.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.|++.||.|||+.     |+||+||+++.+.   .++++|||.+.......   ......+++.|+|   |    |++
T Consensus       135 ~~~~i~~al~~LH~~~i~H~dlkp~Nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  204 (296)
T cd05051         135 MATQIASGMRYLESLNFVHRDLATRNCLVGKNY---TIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMA---W----ESV  204 (296)
T ss_pred             HHHHHHHHHHHHHHcCccccccchhceeecCCC---ceEEccccceeecccCcceeecCcCCCCceecC---H----HHh
Confidence            467999999999997     7899999999863   48999999987653322   2224456788999   9    766


Q ss_pred             hccCcce--------------e--ccCCCCCCCCChHHHHHHHHhc-----CCCccCCCCCCCHHHHHHHHHHhhcCcCc
Q psy3184          82 INVGIDN--------------I--FSRPPFCVMNDPMQTYNMIINV-----GIDKIPFPKHVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        82 ~~~~~~~--------------l--~g~~Pf~~~~~~~~~~~~i~~~-----~~~~~~~p~~~s~~~~~li~~~l~~dp~~  140 (185)
                      ....++.              +  .+..||. ..+....+..+...     .......|..++.++.+++.+||..||.+
T Consensus       205 ~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~  283 (296)
T cd05051         205 LLGKFTTKSDVWAFGVTLWEILTLCREQPYE-HLTDQQVIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEED  283 (296)
T ss_pred             hcCCCCccchhhhhHHHHHHHHhcCCCCCCC-CcChHHHHHHHHhccccccccccCCCccCCCHHHHHHHHHHhccChhc
Confidence            5543333              2  3788998 66666665555411     00122344567899999999999999999


Q ss_pred             ccCCCCCChhhhhc
Q psy3184         141 RLGYQRGGIVDIKK  154 (185)
Q Consensus       141 R~~~~~~~~~~ll~  154 (185)
                      ||     ++.+++.
T Consensus       284 Rp-----t~~el~~  292 (296)
T cd05051         284 RP-----TFREIHL  292 (296)
T ss_pred             CC-----CHHHHHH
Confidence            99     4477753

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG0669|consensus

Probab=99.47  E-value=1.9e-13  Score=105.75  Aligned_cols=133  Identities=20%  Similarity=0.205  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-----cccccccCCccccccCCCcccccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-----KILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-----~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ..+++.||.|+|++     |+|+.|+||+.+.   .++++|||.++.+...     ......+-|..|.+   |    |.
T Consensus       130 Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dg---ilklADFGlar~fs~~~n~~kprytnrvvTLwYrp---p----El  199 (376)
T KOG0669|consen  130 MKGLMNGLYYIHRNKILHRDMKAANVLITKDG---ILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRP---P----EL  199 (376)
T ss_pred             HHHHHHHHHHHHHhhHHhhcccHhhEEEcCCc---eEEeeccccccceecccccCCCCcccceeeeecCC---H----HH
Confidence            56789999999997     8999999999964   3899999999755432     12334566899999   9    98


Q ss_pred             hhc-cCcce--------------eccCCCCCCCCChHHHHHHHHhc-C-CCccC-----------------CCC------
Q psy3184          81 IIN-VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-G-IDKIP-----------------FPK------  120 (185)
Q Consensus        81 ~~~-~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~-~~~~~-----------------~p~------  120 (185)
                      +.+ +.|+.              +++.+-+. +++..+.+..|..- | ..+-.                 .|.      
T Consensus       200 lLG~r~yg~~iDiWgAgCimaeMwtrspimq-gnteqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~~~~rkv  278 (376)
T KOG0669|consen  200 LLGDREYGPPIDIWGAGCIMAEMWTRSPIMQ-GNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPKGQKRKV  278 (376)
T ss_pred             hhcccccCCcchhHhHHHHHHHHHccCcccc-CChHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCcchhhhh
Confidence            876 34554              77777777 77766665555310 0 01111                 111      


Q ss_pred             -------CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCC
Q psy3184         121 -------HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ  159 (185)
Q Consensus       121 -------~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~  159 (185)
                             .-.+++.+|+.++|..||.+|+     .+.++++|.||.
T Consensus       279 ~n~~kp~~kd~~a~dLle~ll~~DP~kR~-----~ad~alnh~~F~  319 (376)
T KOG0669|consen  279 KNRLKPYVKDDEALDLLEKLLKLDPTKRI-----DADQALNHDFFW  319 (376)
T ss_pred             hhhcccccCChhHHHHHHHHhccCcccCc-----chHhhhchhhhh
Confidence                   1246899999999999999999     559999999994

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.46  E-value=6.5e-13  Score=103.97  Aligned_cols=121  Identities=17%  Similarity=0.187  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCcccccchhc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      +.|++.||.|||+.     ||+|+||+++.+  + .++++|||.+.....+..  .....++..|+|   |    |++..
T Consensus       108 ~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~--~-~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~~  177 (260)
T cd05073         108 SAQIAEGMAFIEQRNYIHRDLRAANILVSAS--L-VCKIADFGLARVIEDNEYTAREGAKFPIKWTA---P----EAINF  177 (260)
T ss_pred             HHHHHHHHHHHHhCCccccccCcceEEEcCC--C-cEEECCCcceeeccCCCcccccCCcccccccC---H----hHhcc
Confidence            57999999999987     789999999875  3 499999999876543321  112345667999   9    77765


Q ss_pred             cCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          84 VGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        84 ~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ..++.              ++ |..||. +.+.......+. .+ .....+...+.++.+++.+|+..+|.+||+.
T Consensus       178 ~~~~~~~Di~slG~~l~~l~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~  250 (260)
T cd05073         178 GSFTIKSDVWSFGILLMEIVTYGRIPYP-GMSNPEVIRALE-RG-YRMPRPENCPEELYNIMMRCWKNRPEERPTF  250 (260)
T ss_pred             CCcCccccchHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHh-CC-CCCCCcccCCHHHHHHHHHHcccCcccCcCH
Confidence            44442              55 899998 777777776666 22 2344556789999999999999999999944

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.46  E-value=3.7e-13  Score=109.97  Aligned_cols=127  Identities=13%  Similarity=0.122  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.||+.||.|||++     ||||.||+++.+.   .++++|||++........   .....++..|+|   |    |++.
T Consensus       185 ~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  254 (343)
T cd05103         185 SFQVAKGMEFLASRKCIHRDLAARNILLSENN---VVKICDFGLARDIYKDPDYVRKGDARLPLKWMA---P----ETIF  254 (343)
T ss_pred             HHHHHHHHHHHHhCCeecCCCccCeEEEcCCC---cEEEEecccccccccCcchhhcCCCCCCcceEC---c----HHhc
Confidence            67999999999998     8999999998753   499999999876533211   112345677999   9    8766


Q ss_pred             ccCcce--------------e-ccCCCCCCCCChH-HHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          83 NVGIDN--------------I-FSRPPFCVMNDPM-QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        83 ~~~~~~--------------l-~g~~Pf~~~~~~~-~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ...++.              + .|..||. +.... .....+. .+ .....|..+++++.+++..|+..||.+||    
T Consensus       255 ~~~~~~~~Di~slG~~l~el~~~g~~p~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~cl~~~p~~Rp----  327 (343)
T cd05103         255 DRVYTIQSDVWSFGVLLWEIFSLGASPYP-GVKIDEEFCRRLK-EG-TRMRAPDYTTPEMYQTMLDCWHGEPSQRP----  327 (343)
T ss_pred             CCCCCchhhHHHHHHHHHHHHHCCCCCCC-CccccHHHHHHHh-cc-CCCCCCCCCCHHHHHHHHHHccCChhhCc----
Confidence            555543              3 4899997 54333 3333333 22 34556677889999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.++++|
T Consensus       328 -s~~eil~~  335 (343)
T cd05103         328 -TFSELVEH  335 (343)
T ss_pred             -CHHHHHHH
Confidence             55888765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.46  E-value=5.1e-13  Score=106.07  Aligned_cols=127  Identities=12%  Similarity=0.143  Sum_probs=95.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.|++.||.|||++     +++|.||++..+.   .++++|||.+........   .....++..|+|   |    |.+
T Consensus       135 ~~~~i~~aL~~lH~~~i~H~dl~p~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  204 (288)
T cd05050         135 IAKQVAAGMAYLSERKFVHRDLATRNCLVGENM---VVKIADFGLSRNIYSADYYKASENDAIPIRWMP---P----ESI  204 (288)
T ss_pred             HHHHHHHHHHHHHhCCeecccccHhheEecCCC---ceEECccccceecccCccccccCCCccChhhcC---H----HHH
Confidence            578999999999997     7899999998753   389999999876543221   122344667999   9    877


Q ss_pred             hccCcce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              + .|..||. +.+..+....+. .+ .....|..++.++.+|+.+||..||.+||++  
T Consensus       205 ~~~~~~~~~Dv~slG~il~el~~~~~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~--  279 (288)
T cd05050         205 FYNRYTTESDVWAYGVVLWEIFSYGMQPYY-GMAHEEVIYYVR-DG-NVLSCPDNCPLELYNLMRLCWSKLPSDRPSF--  279 (288)
T ss_pred             hcCCCCchhHHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHh-cC-CCCCCCCCCCHHHHHHHHHHcccCcccCCCH--
Confidence            6555543              3 3888998 777777777776 23 2344567789999999999999999999954  


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                         .++++
T Consensus       280 ---~el~~  284 (288)
T cd05050         280 ---ASINR  284 (288)
T ss_pred             ---HHHHH
Confidence               77653

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.46  E-value=4.9e-13  Score=111.85  Aligned_cols=127  Identities=16%  Similarity=0.132  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.||+.||.|||+.     |+||.||+++.+.   .++++|||+++......   ......+++.|+|   |    |++.
T Consensus       245 ~~qi~~aL~~LH~~~ivHrdlkp~NiLl~~~~---~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  314 (401)
T cd05107         245 SYQVANGMEFLASKNCVHRDLAARNVLICEGK---LVKICDFGLARDIMRDSNYISKGSTFLPLKWMA---P----ESIF  314 (401)
T ss_pred             HHHHHHHHHHHhcCCcCcccCCcceEEEeCCC---EEEEEecCcceecccccccccCCCcCCCCceeC---h----HHhc
Confidence            56999999999987     7899999998743   48999999998653321   1223467888999   9    8776


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. .....+........+ ..+..|..++.++.+|+.+|+..+|.+||+    
T Consensus       315 ~~~~~~~~DvwslGvil~e~l~~g~~P~~-~~~~~~~~~~~~~~~-~~~~~p~~~~~~l~~li~~cl~~~P~~RPs----  388 (401)
T cd05107         315 NNLYTTLSDVWSFGILLWEIFTLGGTPYP-ELPMNEQFYNAIKRG-YRMAKPAHASDEIYEIMQKCWEEKFEIRPD----  388 (401)
T ss_pred             CCCCCcHhHHHHHHHHHHHHHHcCCCCCC-CCCchHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHcCCChhHCcC----
Confidence            554443              43 889997 555444443333122 345667788999999999999999999994    


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                       +.+|+.
T Consensus       389 -~~ell~  394 (401)
T cd05107         389 -FSQLVH  394 (401)
T ss_pred             -HHHHHH
Confidence             477765

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.46  E-value=6.4e-13  Score=103.77  Aligned_cols=126  Identities=14%  Similarity=0.145  Sum_probs=94.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.|+.|||++     +++|+||+++.+.   .++++|||.+........  .....++..|+|   |    |.+.
T Consensus       108 ~~~~i~~al~~lh~~~i~h~di~p~nili~~~~---~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~  177 (261)
T cd05034         108 MAAQIAEGMAYLESRNYIHRDLAARNILVGENL---VCKIADFGLARLIEDDEYTAREGAKFPIKWTA---P----EAAN  177 (261)
T ss_pred             HHHHHHHHHHHHHhCCcccCCcchheEEEcCCC---CEEECccccceeccchhhhhhhccCCCccccC---H----HHhc
Confidence            367899999999998     7899999998863   389999999876643211  112234568999   9    8776


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      +..++.              ++ |..||. +.+.......+. .+ .....|...+.++.+++.+||..+|.+||++   
T Consensus       178 ~~~~~~~~Di~slG~il~~l~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~---  251 (261)
T cd05034         178 YGRFTIKSDVWSFGILLTEIVTYGRVPYP-GMTNREVLEQVE-RG-YRMPRPPNCPEELYDLMLQCWDKDPEERPTF---  251 (261)
T ss_pred             cCCcCchhHHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHcccCcccCCCH---
Confidence            554443              55 999998 777777777776 22 2445566779999999999999999999944   


Q ss_pred             Chhhhh
Q psy3184         148 GIVDIK  153 (185)
Q Consensus       148 ~~~~ll  153 (185)
                        +++.
T Consensus       252 --~~l~  255 (261)
T cd05034         252 --EYLQ  255 (261)
T ss_pred             --HHHH
Confidence              6654

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.46  E-value=5.3e-13  Score=114.27  Aligned_cols=132  Identities=16%  Similarity=0.188  Sum_probs=88.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccccc--ccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRL--LSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~--~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.|++.||.|||+.     |+||+||+++.+.   .++++|||++.....+.....  ..+++.|+|   |    |++.
T Consensus       314 i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~---~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~a---P----E~l~  383 (507)
T PLN03224        314 VMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDG---QVKIIDFGAAVDMCTGINFNPLYGMLDPRYSP---P----EELV  383 (507)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCchHhEEECCCC---cEEEEeCcCccccccCCccCccccCCCcceeC---h----hhhc
Confidence            467999999999997     8999999998853   489999999875544322222  234799999   9    6543


Q ss_pred             ccC--------------------------cce----------eccC-CCCCCCCCh-----------HHHHHHHHhcCCC
Q psy3184          83 NVG--------------------------IDN----------IFSR-PPFCVMNDP-----------MQTYNMIINVGID  114 (185)
Q Consensus        83 ~~~--------------------------~~~----------l~g~-~Pf~~~~~~-----------~~~~~~i~~~~~~  114 (185)
                      ...                          ++.          ++|. .||. ....           ...+..+. .  .
T Consensus       384 ~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~-~~~~f~~~~~~~~~~~~~~r~~~-~--~  459 (507)
T PLN03224        384 MPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVA-NIRLFNTELRQYDNDLNRWRMYK-G--Q  459 (507)
T ss_pred             CCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCcc-chhhhhhHHhhccchHHHHHhhc-c--c
Confidence            210                          111          4444 3654 2111           11112222 1  2


Q ss_pred             ccCCC--CCCCHHHHHHHHHHhhcCc---CcccCCCCCChhhhhcCCCCCC
Q psy3184         115 KIPFP--KHVTRTAQSLIKALCKESP---AERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       115 ~~~~p--~~~s~~~~~li~~~l~~dp---~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                      .+.++  ..+++.+++|+.+||.++|   .+|+     ++.++|+||||..
T Consensus       460 ~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~Rl-----Sa~eaL~Hp~f~~  505 (507)
T PLN03224        460 KYDFSLLDRNKEAGWDLACKLITKRDQANRGRL-----SVGQALSHRFFLP  505 (507)
T ss_pred             CCCcccccccChHHHHHHHHHhccCCCCcccCC-----CHHHHhCCCCcCC
Confidence            33333  5689999999999999876   6799     7799999999953

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.45  E-value=8.7e-13  Score=102.74  Aligned_cols=127  Identities=16%  Similarity=0.176  Sum_probs=94.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      -+.|++.|+.|||+.     |++|.||+++.+.   .++++|||.+........  .....++..|+|   |    |.+.
T Consensus       105 ~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~---~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~a---P----e~~~  174 (256)
T cd05112         105 MCLDVCEGMAYLESSNVIHRDLAARNCLVGENQ---VVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSS---P----EVFS  174 (256)
T ss_pred             HHHHHHHHHHHHHHCCccccccccceEEEcCCC---eEEECCCcceeecccCcccccCCCccchhhcC---H----hHhc
Confidence            356899999999987     7899999998743   489999999876543321  112334568999   9    8776


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      +..++.              ++ |..||. ..+.......+. .+ .....|...+.++.+|+.+||..+|++||     
T Consensus       175 ~~~~~~~~Dv~slG~~l~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~l~~~p~~Rp-----  246 (256)
T cd05112         175 FSKYSSKSDVWSFGVLMWEVFSEGKTPYE-NRSNSEVVETIN-AG-FRLYKPRLASQSVYELMQHCWKERPEDRP-----  246 (256)
T ss_pred             cCCcChHHHHHHHHHHHHHHHcCCCCCCC-cCCHHHHHHHHh-CC-CCCCCCCCCCHHHHHHHHHHcccChhhCC-----
Confidence            544443              44 899998 777777777776 22 23344666899999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      +++++++
T Consensus       247 ~~~~~l~  253 (256)
T cd05112         247 SFSLLLH  253 (256)
T ss_pred             CHHHHHH
Confidence            5588765

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.45  E-value=5.2e-13  Score=111.67  Aligned_cols=122  Identities=17%  Similarity=0.176  Sum_probs=89.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.   .++|+|||.++......   ......+++.|+|   |    |++
T Consensus       242 ~~~qi~~aL~~LH~~~ivH~dikp~Nill~~~~---~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  311 (400)
T cd05105         242 FTYQVARGMEFLASKNCVHRDLAARNVLLAQGK---IVKICDFGLARDIMHDSNYVSKGSTFLPVKWMA---P----ESI  311 (400)
T ss_pred             HHHHHHHHHHHHHhCCeeCCCCChHhEEEeCCC---EEEEEeCCcceeccccccccccCCcCCCcceEC---h----hhh
Confidence            467999999999997     7899999998853   48999999988654322   1223456788999   9    777


Q ss_pred             hccCcce--------------e-ccCCCCCCCCChHH-HHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          82 INVGIDN--------------I-FSRPPFCVMNDPMQ-TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        82 ~~~~~~~--------------l-~g~~Pf~~~~~~~~-~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      .+..++.              + .|..||. ...... ....+. .+ ..+..|..++.++.+++.+||..||.+||++
T Consensus       312 ~~~~~~~~~DiwSlGvil~ellt~g~~P~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~  387 (400)
T cd05105         312 FDNLYTTLSDVWSYGILLWEIFSLGGTPYP-GMIVDSTFYNKIK-SG-YRMAKPDHATQEVYDIMVKCWNSEPEKRPSF  387 (400)
T ss_pred             cCCCCCchhhHHHHHHHHHHHHHCCCCCCc-ccchhHHHHHHHh-cC-CCCCCCccCCHHHHHHHHHHCccCHhHCcCH
Confidence            6554443              3 4889998 544433 334444 22 3455667889999999999999999999954

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.45  E-value=9.1e-13  Score=103.39  Aligned_cols=126  Identities=16%  Similarity=0.161  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc-c---ccccCCccccccCCCcccccch
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI-L---RLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~-~---~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ..|++.|++|||+.     |+||.||+++.+.   .++++|||.+........ .   .....++.|+|   |    |++
T Consensus       113 ~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~---P----E~~  182 (268)
T cd05063         113 LRGIAAGMKYLSDMNYVHRDLAARNILVNSNL---ECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTA---P----EAI  182 (268)
T ss_pred             HHHHHHHHHHHHHCCeeccccchhhEEEcCCC---cEEECCCccceecccccccceeccCCCcCceecC---H----HHh
Confidence            57899999999998     7899999998753   389999999876543211 1   11223457999   9    877


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. ..+..+....+. .+ .....+..++.++.+++.+|+..+|.+||++  
T Consensus       183 ~~~~~~~~~Dv~slG~il~ell~~g~~p~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~--  257 (268)
T cd05063         183 AYRKFTSASDVWSFGIVMWEVMSFGERPYW-DMSNHEVMKAIN-DG-FRLPAPMDCPSAVYQLMLQCWQQDRARRPRF--  257 (268)
T ss_pred             hcCCcChHhHHHHHHHHHHHHHhCCCCCCC-cCCHHHHHHHHh-cC-CCCCCCCCCCHHHHHHHHHHcCCCcccCcCH--
Confidence            6554443              44 999998 777777777776 22 2444556689999999999999999999954  


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                         .++++
T Consensus       258 ---~~i~~  262 (268)
T cd05063         258 ---VDIVN  262 (268)
T ss_pred             ---HHHHH
Confidence               77653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.44  E-value=8.7e-13  Score=103.70  Aligned_cols=126  Identities=11%  Similarity=0.111  Sum_probs=87.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCC----CCeeEEcccCceeEeecCcccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEA----GNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~----~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||+|||++     ||||+||++..+..    ...++++|||.+......   ....|+..|+|   |    |.
T Consensus       110 i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~---~~~~~~~~y~a---P----E~  179 (262)
T cd05077         110 VAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSR---QECVERIPWIA---P----EC  179 (262)
T ss_pred             HHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCc---ccccccccccC---h----hh
Confidence            478999999999998     78999999976421    112789999987644222   23467889999   9    76


Q ss_pred             hhc-cCcce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          81 IIN-VGIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        81 ~~~-~~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      +.. ..++.              + .|..||. .....+... +. .+  ........+.++.+|+.+||..||.+||++
T Consensus       180 ~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~-~~~~~~~~~-~~-~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rp~~  254 (262)
T cd05077         180 VEDSKNLSIAADKWSFGTTLWEICYNGEIPLK-DKTLAEKER-FY-EG--QCMLVTPSCKELADLMTHCMNYDPNQRPFF  254 (262)
T ss_pred             hcCCCCCCchhHHHHHHHHHHHHHhCCCCCCC-CcchhHHHH-HH-hc--CccCCCCChHHHHHHHHHHcCCChhhCcCH
Confidence            652 33332              3 5888987 555444322 22 11  223333457899999999999999999954


Q ss_pred             CCCChhhhhcC
Q psy3184         145 QRGGIVDIKKH  155 (185)
Q Consensus       145 ~~~~~~~ll~h  155 (185)
                           .+|+.+
T Consensus       255 -----~~il~~  260 (262)
T cd05077         255 -----RAIMRD  260 (262)
T ss_pred             -----HHHHHh
Confidence                 888764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.44  E-value=9.1e-13  Score=105.67  Aligned_cols=126  Identities=10%  Similarity=0.123  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.||+.||.|||++     ||||+||+++.+.   .++|+|||.++.......   .....++..|++   |    |++.
T Consensus       115 ~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~  184 (303)
T cd05110         115 CVQIAKGMMYLEERRLVHRDLAARNVLVKSPN---HVKITDFGLARLLEGDEKEYNADGGKMPIKWMA---L----ECIH  184 (303)
T ss_pred             HHHHHHHHHHHhhcCeeccccccceeeecCCC---ceEEccccccccccCcccccccCCCccccccCC---H----HHhc
Confidence            57999999999998     7899999997753   389999999986643321   122345678999   9    8776


Q ss_pred             ccCcce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      +..++.              + .|..||. +.........+. .+ ..+..+...+.++.+++.+|+..+|++||++   
T Consensus       185 ~~~~~~~~DiwslG~~l~el~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~---  258 (303)
T cd05110         185 YRKFTHQSDVWSYGVTIWELMTFGGKPYD-GIPTREIPDLLE-KG-ERLPQPPICTIDVYMVMVKCWMIDADSRPKF---  258 (303)
T ss_pred             cCCCChHHHHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-CC-CCCCCCCCCCHHHHHHHHHHcCCChhhCcCH---
Confidence            554443              4 4899998 666555544444 22 3344456688999999999999999999954   


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                        .+++.
T Consensus       259 --~~l~~  263 (303)
T cd05110         259 --KELAA  263 (303)
T ss_pred             --HHHHH
Confidence              66654

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.43  E-value=8.7e-13  Score=103.22  Aligned_cols=125  Identities=17%  Similarity=0.155  Sum_probs=89.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCC-----CeeEEcccCceeEeecCcccccccCCccccccCCCccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAG-----NDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~-----~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .+.||+.|+.|||++     |+||.||+++.+...     ..++++|||.+.....   .....+++.|+|   |    |
T Consensus       105 ~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~---~~~~~~~~~y~a---P----E  174 (258)
T cd05078         105 VAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLP---KEILLERIPWVP---P----E  174 (258)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccccCC---chhccccCCccC---c----h
Confidence            368999999999998     789999999875321     1268888887754432   234578899999   9    7


Q ss_pred             chhcc-Ccce--------------ecc-CCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          80 MIINV-GIDN--------------IFS-RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        80 ~~~~~-~~~~--------------l~g-~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                      ++... .++.              ++| ..||. ..+.........    ....+|...+.++.+++.+||..||++|| 
T Consensus       175 ~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-  248 (258)
T cd05078         175 CIENPQNLSLAADKWSFGTTLWEIFSGGDKPLS-ALDSQKKLQFYE----DRHQLPAPKWTELANLINQCMDYEPDFRP-  248 (258)
T ss_pred             hccCCCCCCchhhHHHHHHHHHHHHcCCCCChh-hccHHHHHHHHH----ccccCCCCCcHHHHHHHHHHhccChhhCC-
Confidence            76542 2332              666 56776 555544433222    25567777889999999999999999999 


Q ss_pred             CCCCChhhhhc
Q psy3184         144 YQRGGIVDIKK  154 (185)
Q Consensus       144 ~~~~~~~~ll~  154 (185)
                          +++++++
T Consensus       249 ----s~~~il~  255 (258)
T cd05078         249 ----SFRAIIR  255 (258)
T ss_pred             ----CHHHHHH
Confidence                5588765

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>KOG0666|consensus

Probab=99.43  E-value=1.5e-13  Score=108.90  Aligned_cols=137  Identities=18%  Similarity=0.279  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccC--CCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCccccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEG--EAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~--~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      ..||+.|+.|||++     ||||.||++..+  .+| .+|++|+|+++++...-    .....+-|..|.|   |    |
T Consensus       138 lwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG-~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRA---P----E  209 (438)
T KOG0666|consen  138 LWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERG-RVKIADLGLARLFNNPLKPLASLDPVVVTIWYRA---P----E  209 (438)
T ss_pred             HHHHHhhhHHHhhhheeeccCCcceEEEeccCCccC-eeEeecccHHHHhhccccccccCCceEEEEEecC---h----H
Confidence            57999999999998     999999999765  334 49999999998765431    2234567899999   9    9


Q ss_pred             chhcc-Ccce--------------eccCCCCCCCCC-------h--HHHHHHHHhc-CC-Ccc------CCCC-------
Q psy3184          80 MIINV-GIDN--------------IFSRPPFCVMND-------P--MQTYNMIINV-GI-DKI------PFPK-------  120 (185)
Q Consensus        80 ~~~~~-~~~~--------------l~g~~Pf~~~~~-------~--~~~~~~i~~~-~~-~~~------~~p~-------  120 (185)
                      ++.+- .|+.              ++..+-|. +..       +  .+.+.+|... |. ..-      .+|+       
T Consensus       210 LLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~-g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~  288 (438)
T KOG0666|consen  210 LLLGARHYTKAIDVWAIGCIFAELLTLEPLFK-GREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSD  288 (438)
T ss_pred             HhcccccccchhhhHHHHHHHHHHHccCcccc-chhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHH
Confidence            88874 4554              33344443 221       1  1112222200 00 000      1110       


Q ss_pred             -------------------CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         121 -------------------HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       121 -------------------~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                                         .-++.+.+|+.+||..||.+|+     ++++.++|+||..-
T Consensus       289 f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRI-----ta~qAleh~yF~~d  343 (438)
T KOG0666|consen  289 FRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRI-----TAEQALEHPYFTED  343 (438)
T ss_pred             hHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhc-----cHHHHhcccccccC
Confidence                               1245689999999999999999     55999999999754

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.43  E-value=1.3e-12  Score=102.75  Aligned_cols=126  Identities=14%  Similarity=0.163  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccccc----ccC--CccccccCCCccccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRL----LSG--RPPFCVMNDPMQTYN   79 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~----~~g--t~~y~a~~~P~~~~E   79 (185)
                      +.|++.||.|||++     |++|.||+++.+.   .++++|||.+...........    ..|  +..|++   |    |
T Consensus       112 ~~~l~~al~~lH~~g~~H~dl~p~nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~---P----E  181 (269)
T cd05065         112 LRGIAAGMKYLSEMNYVHRDLAARNILVNSNL---VCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTA---P----E  181 (269)
T ss_pred             HHHHHHHHHHHHHCCEeecccChheEEEcCCC---cEEECCCccccccccCccccccccccCCCcceeecC---H----h
Confidence            57899999999998     7899999998753   389999998876543221111    111  346999   9    7


Q ss_pred             chhccCcce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          80 MIINVGIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        80 ~~~~~~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      .+....++.              + .|..||. ..+..+....+. .. .....|..++.++.+++.+||..+|.+||  
T Consensus       182 ~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp--  256 (269)
T cd05065         182 AIAYRKFTSASDVWSYGIVMWEVMSYGERPYW-DMSNQDVINAIE-QD-YRLPPPMDCPTALHQLMLDCWQKDRNARP--  256 (269)
T ss_pred             HhccCcccchhhhhhhHHHHHHHhcCCCCCCC-CCCHHHHHHHHH-cC-CcCCCcccCCHHHHHHHHHHcCCChhhCc--
Confidence            776554443              4 4999998 777777776665 22 24455567899999999999999999999  


Q ss_pred             CCCChhhhhc
Q psy3184         145 QRGGIVDIKK  154 (185)
Q Consensus       145 ~~~~~~~ll~  154 (185)
                         ++++++.
T Consensus       257 ---~~~~i~~  263 (269)
T cd05065         257 ---KFGQIVS  263 (269)
T ss_pred             ---CHHHHHH
Confidence               4477764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.43  E-value=1.1e-12  Score=103.39  Aligned_cols=129  Identities=14%  Similarity=0.164  Sum_probs=93.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ...||+.||+|||++     |+||+||+++.+.   .++++++|++.......  ......++..|++   |    |.+.
T Consensus       122 ~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~---P----E~~~  191 (275)
T cd05046         122 LCTQIALGMDHLSNARFVHRDLAARNCLVSSQR---EVKVSLLSLSKDVYNSEYYKLRNALIPLRWLA---P----EAVQ  191 (275)
T ss_pred             HHHHHHHHHHHhhhcCcccCcCccceEEEeCCC---cEEEcccccccccCcccccccCCceeEEeecC---h----hhhc
Confidence            467999999999998     7899999998853   38999999876442211  1223456778999   9    7665


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. ..+.......+. .+......+..++..+.+++.+||..+|.+||     
T Consensus       192 ~~~~~~~~Di~slG~~l~~l~~~~~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp-----  264 (275)
T cd05046         192 EDDFSTKSDVWSFGVLMWEVFTQGELPFY-GLSDEEVLNRLQ-AGKLELPVPEGCPSRLYKLMTRCWAVNPKDRP-----  264 (275)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCcc-ccchHHHHHHHH-cCCcCCCCCCCCCHHHHHHHHHHcCCCcccCC-----
Confidence            443322              33 788998 666666666666 33233445567899999999999999999999     


Q ss_pred             ChhhhhcC
Q psy3184         148 GIVDIKKH  155 (185)
Q Consensus       148 ~~~~ll~h  155 (185)
                      ++.+++.+
T Consensus       265 ~~~~~l~~  272 (275)
T cd05046         265 SFSELVSA  272 (275)
T ss_pred             CHHHHHHH
Confidence            55887653

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.42  E-value=1.3e-12  Score=102.15  Aligned_cols=125  Identities=21%  Similarity=0.258  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      +.|++.|+.|||+.     |++|+||+++.+.   +++++|||.+...... .......|++.|+|   |    |.+.+.
T Consensus       112 ~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~---~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~a---p----E~~~~~  181 (267)
T cd08224         112 FVQLCSALEHMHSKRIMHRDIKPANVFITATG---VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMS---P----ERIHEN  181 (267)
T ss_pred             HHHHHHHHHHHHhCCEecCCcChhhEEECCCC---cEEEeccceeeeccCCCcccceecCCccccC---H----HHhccC
Confidence            67899999999997     7899999998753   3899999998765443 22344678999999   9    877655


Q ss_pred             Ccce--------------eccCCCCCCCC--ChHHHHHHHHhcCCCccCCCC-CCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMN--DPMQTYNMIINVGIDKIPFPK-HVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~--~~~~~~~~i~~~~~~~~~~p~-~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .++.              ++|..||. ..  +..+....+. .+ .....|. .++.++.++|.+||..+|.+||+    
T Consensus       182 ~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~----  254 (267)
T cd08224         182 GYNFKSDIWSLGCLLYEMAALQSPFY-GDKMNLYSLCKKIE-KC-DYPPLPADHYSEELRDLVSRCINPDPEKRPD----  254 (267)
T ss_pred             CCCchhcHHHHHHHHHHHHHCCCCcc-cCCccHHHHHhhhh-cC-CCCCCChhhcCHHHHHHHHHHcCCCcccCCC----
Confidence            5543              78999996 43  3344445544 22 2333444 68899999999999999999994    


Q ss_pred             Chhhhh
Q psy3184         148 GIVDIK  153 (185)
Q Consensus       148 ~~~~ll  153 (185)
                       +.+++
T Consensus       255 -~~~il  259 (267)
T cd08224         255 -ISYVL  259 (267)
T ss_pred             -HHHHH
Confidence             47665

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.42  E-value=5.1e-13  Score=104.92  Aligned_cols=127  Identities=16%  Similarity=0.251  Sum_probs=94.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     +|++.||+++.+.   .++|+|||+........   ......+...|+|   |    |.+
T Consensus       108 i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~---~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~a---P----E~~  177 (259)
T PF07714_consen  108 IAIQIAEALSYLHSNNIIHGNLSPSNILLDSNG---QVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLA---P----EVL  177 (259)
T ss_dssp             HHHHHHHHHHHHHHTTEEEST-SGGGEEEETTT---EEEEESTTTGEETTTSSSEEESTTSESGGGGS----H----HHH
T ss_pred             ccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccc---c----ccc
Confidence            378999999999998     7899999999853   59999999998762221   1223446678999   9    887


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. ..+..+....+. .+ .....|..++..+.++|..||..||.+||    
T Consensus       178 ~~~~~~~ksDVysfG~~l~ei~~~~~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~C~~~~p~~RP----  250 (259)
T PF07714_consen  178 KDGEYTKKSDVYSFGMLLYEILTLGKFPFS-DYDNEEIIEKLK-QG-QRLPIPDNCPKDIYSLIQQCWSHDPEKRP----  250 (259)
T ss_dssp             HHSEESHHHHHHHHHHHHHHHHTTSSGTTT-TSCHHHHHHHHH-TT-EETTSBTTSBHHHHHHHHHHT-SSGGGS-----
T ss_pred             cccccccccccccccccccccccccccccc-cccccccccccc-cc-ccceeccchhHHHHHHHHHHcCCChhhCc----
Confidence            6655443              66 789998 778888888876 33 35566778999999999999999999999    


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                       ++.++++
T Consensus       251 -s~~~i~~  257 (259)
T PF07714_consen  251 -SFQEILQ  257 (259)
T ss_dssp             --HHHHHH
T ss_pred             -CHHHHHh
Confidence             4477753

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.42  E-value=1.3e-12  Score=102.68  Aligned_cols=125  Identities=15%  Similarity=0.166  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc----cccccCCccccccCCCcccccch
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI----LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~----~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ..|++.|+.|||+.     |+||+||+++.+.   .++++|||.+........    .....++..|++   |    |.+
T Consensus       112 ~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~---p----e~~  181 (267)
T cd05066         112 LRGIASGMKYLSDMGYVHRDLAARNILVNSNL---VCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTA---P----EAI  181 (267)
T ss_pred             HHHHHHHHHHHHHCCEeehhhchhcEEECCCC---eEEeCCCCcccccccccceeeecCCCccceeecC---H----hHh
Confidence            57899999999987     7899999998753   389999999886543211    111233567999   9    877


Q ss_pred             hccCcce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              + .|..||. ..+..+....+. .+ ..+..+..++.++.+++.+|+..+|.+||++  
T Consensus       182 ~~~~~~~~~Dv~slG~~l~ell~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~--  256 (267)
T cd05066         182 AYRKFTSASDVWSYGIVMWEVMSYGERPYW-EMSNQDVIKAIE-EG-YRLPAPMDCPAALHQLMLDCWQKDRNERPKF--  256 (267)
T ss_pred             ccCccCchhhhHHHHHHHHHHhcCCCCCcc-cCCHHHHHHHHh-CC-CcCCCCCCCCHHHHHHHHHHcccCchhCCCH--
Confidence            6554443              4 4999998 766666666666 22 2344455678999999999999999999954  


Q ss_pred             CChhhhh
Q psy3184         147 GGIVDIK  153 (185)
Q Consensus       147 ~~~~~ll  153 (185)
                         ++++
T Consensus       257 ---~~i~  260 (267)
T cd05066         257 ---EQIV  260 (267)
T ss_pred             ---HHHH
Confidence               6665

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.42  E-value=1.7e-12  Score=103.51  Aligned_cols=127  Identities=9%  Similarity=0.047  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.|++.||.|||+.     |+||+||+++.+.   .++|+|||++........   .....++..|+|   |    |++.
T Consensus       135 ~~~i~~al~~lH~~~i~H~dlkp~Nill~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  204 (295)
T cd05097         135 AVQIASGMKYLASLNFVHRDLATRNCLVGNHY---TIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMA---W----ESIL  204 (295)
T ss_pred             HHHHHHHHHHHHhcCeeccccChhhEEEcCCC---cEEecccccccccccCcceeccCcCcCceeecC---h----hhhc
Confidence            67999999999998     7899999998753   389999999875533221   122345678999   9    7665


Q ss_pred             ccCcce----------------eccCCCCCCCCChHHHHHHHHh---c-C-CCccCCCCCCCHHHHHHHHHHhhcCcCcc
Q psy3184          83 NVGIDN----------------IFSRPPFCVMNDPMQTYNMIIN---V-G-IDKIPFPKHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        83 ~~~~~~----------------l~g~~Pf~~~~~~~~~~~~i~~---~-~-~~~~~~p~~~s~~~~~li~~~l~~dp~~R  141 (185)
                      ...++.                ..+..||. ..+..+....+..   . + ......+..++..+.+|+.+|+..||.+|
T Consensus       205 ~~~~~~~~DvwSlG~~l~el~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R  283 (295)
T cd05097         205 LGKFTTASDVWAFGVTLWEMFTLCKEQPYS-LLSDEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDR  283 (295)
T ss_pred             cCCcCchhhHHHHHHHHHHHHHcCCCCCCc-ccChHHHHHHHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhC
Confidence            444433                23678998 6665555444321   0 0 01233345678999999999999999999


Q ss_pred             cCCCCCChhhhh
Q psy3184         142 LGYQRGGIVDIK  153 (185)
Q Consensus       142 ~~~~~~~~~~ll  153 (185)
                      |++     ++++
T Consensus       284 Ps~-----~~i~  290 (295)
T cd05097         284 PTF-----NKIH  290 (295)
T ss_pred             cCH-----HHHH
Confidence            944     7764

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>KOG1035|consensus

Probab=99.40  E-value=7e-13  Score=119.62  Aligned_cols=131  Identities=16%  Similarity=0.227  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee----c---------------CcccccccCCc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK----D---------------GKILRLLSGRP   66 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~----~---------------~~~~~~~~gt~   66 (185)
                      -.||++||.|+|++     ||||.||+++.+.   +|||.|||++....    .               ....+..+||.
T Consensus       703 FreIlEGLaYIH~~giIHRDLKP~NIFLd~~~---~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTa  779 (1351)
T KOG1035|consen  703 FREILEGLAYIHDQGIIHRDLKPRNIFLDSRN---SVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTA  779 (1351)
T ss_pred             HHHHHHHHHHHHhCceeeccCCcceeEEcCCC---CeeecccccchhhhhhhhhHhhccCccccccCCCCccccccccee
Confidence            46999999999998     8999999999742   49999999987522    0               01345679999


Q ss_pred             cccccCCCcccccchhccC---cce-----------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHH
Q psy3184          67 PFCVMNDPMQTYNMIINVG---IDN-----------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQS  128 (185)
Q Consensus        67 ~y~a~~~P~~~~E~~~~~~---~~~-----------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~  128 (185)
                      -|+|   |    |++.+..   |+.           +--..||.-+.....++.++. .|  .++.|    ..--+..+.
T Consensus       780 lYvA---P----Ell~~~~~~~Yn~KiDmYSLGIVlFEM~yPF~TsMERa~iL~~LR-~g--~iP~~~~f~~~~~~~e~s  849 (1351)
T KOG1035|consen  780 LYVA---P----ELLSDTSSNKYNSKIDMYSLGIVLFEMLYPFGTSMERASILTNLR-KG--SIPEPADFFDPEHPEEAS  849 (1351)
T ss_pred             eeec---H----HHhcccccccccchhhhHHHHHHHHHHhccCCchHHHHHHHHhcc-cC--CCCCCcccccccchHHHH
Confidence            9999   9    8877643   665           334567872233334444444 22  22222    112356778


Q ss_pred             HHHHHhhcCcCcccCCCCCChhhhhcCCCCC
Q psy3184         129 LIKALCKESPAERLGYQRGGIVDIKKHKWFQ  159 (185)
Q Consensus       129 li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~  159 (185)
                      +|+.|+..||.+||     +|.+||++.||.
T Consensus       850 lI~~Ll~hdP~kRP-----tA~eLL~s~llp  875 (1351)
T KOG1035|consen  850 LIRWLLSHDPSKRP-----TATELLNSELLP  875 (1351)
T ss_pred             HHHHHhcCCCccCC-----CHHHHhhccCCC
Confidence            99999999999999     669999999997

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.39  E-value=7.4e-13  Score=119.28  Aligned_cols=121  Identities=15%  Similarity=0.191  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-------------------cccccccCCc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-------------------KILRLLSGRP   66 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-------------------~~~~~~~gt~   66 (185)
                      +.||+.||+|||++     ||||+||+++.+.   .++++|||.++.....                   ......+||+
T Consensus       119 ~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg---~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~  195 (932)
T PRK13184        119 FHKICATIEYVHSKGVLHRDLKPDNILLGLFG---EVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTP  195 (932)
T ss_pred             HHHHHHHHHHHHHCCccccCCchheEEEcCCC---CEEEEecCcceecccccccccccccccccccccccccCCCCCCCC
Confidence            56999999999997     8999999998753   3899999999765210                   0011357999


Q ss_pred             cccccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCC--CCCCCHHHHHHH
Q psy3184          67 PFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPF--PKHVTRTAQSLI  130 (185)
Q Consensus        67 ~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~--p~~~s~~~~~li  130 (185)
                      .|||   |    |++.+..++.              ++|..||. ..+......... . ..+...  ...+++.+.+++
T Consensus       196 ~YmA---P----E~l~g~~~S~kSDIWSLGVILyELLTG~~PF~-~~~~~ki~~~~~-i-~~P~~~~p~~~iP~~L~~LI  265 (932)
T PRK13184        196 DYMA---P----ERLLGVPASESTDIYALGVILYQMLTLSFPYR-RKKGRKISYRDV-I-LSPIEVAPYREIPPFLSQIA  265 (932)
T ss_pred             CCCC---H----HHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCC-Ccchhhhhhhhh-c-cChhhccccccCCHHHHHHH
Confidence            9999   9    8877665554              88999998 554433322211 0 111111  135789999999


Q ss_pred             HHHhhcCcCcccCC
Q psy3184         131 KALCKESPAERLGY  144 (185)
Q Consensus       131 ~~~l~~dp~~R~~~  144 (185)
                      .+||..||.+|++.
T Consensus       266 ~rcL~~DP~kR~ss  279 (932)
T PRK13184        266 MKALAVDPAERYSS  279 (932)
T ss_pred             HHHccCChhhCcCH
Confidence            99999999999965

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.39  E-value=2.9e-12  Score=102.27  Aligned_cols=128  Identities=11%  Similarity=0.097  Sum_probs=88.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||+.     |+||+||+++.+.   .++|+|||++..+.....   .....+++.|++   |    |+.
T Consensus       135 ~~~~i~~al~~lH~~~i~H~dlkp~Nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~---p----e~~  204 (296)
T cd05095         135 MATQIASGMKYLSSLNFVHRDLATRNCLVGKNY---TIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMS---W----ESI  204 (296)
T ss_pred             HHHHHHHHHHHHHHCCeecccCChheEEEcCCC---CEEeccCcccccccCCcceeccCcCcCccccCC---H----HHH
Confidence            478999999999998     7899999998753   489999999876533221   112344678999   9    766


Q ss_pred             hccCcce--------------e--ccCCCCCCCCChHHHHHHHHh---c-C-CCccCCCCCCCHHHHHHHHHHhhcCcCc
Q psy3184          82 INVGIDN--------------I--FSRPPFCVMNDPMQTYNMIIN---V-G-IDKIPFPKHVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        82 ~~~~~~~--------------l--~g~~Pf~~~~~~~~~~~~i~~---~-~-~~~~~~p~~~s~~~~~li~~~l~~dp~~  140 (185)
                      ....++.              +  .|..||. ..+..+.......   . + ......|..++..+.+|+.+||..||.+
T Consensus       205 ~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~  283 (296)
T cd05095         205 LLGKFTTASDVWAFGVTLWEILTLCKEQPYS-QLSDEQVIENTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKE  283 (296)
T ss_pred             hcCCccchhhhhHHHHHHHHHHHhCCCCCcc-ccChHHHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCccc
Confidence            5544443              3  3789998 6655554433210   0 0 1122334568899999999999999999


Q ss_pred             ccCCCCCChhhhh
Q psy3184         141 RLGYQRGGIVDIK  153 (185)
Q Consensus       141 R~~~~~~~~~~ll  153 (185)
                      ||+.     .++.
T Consensus       284 Rp~~-----~~i~  291 (296)
T cd05095         284 RPSF-----QEIH  291 (296)
T ss_pred             CCCH-----HHHH
Confidence            9944     6664

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.39  E-value=2.9e-12  Score=101.41  Aligned_cols=126  Identities=13%  Similarity=0.136  Sum_probs=88.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCC----CCeeEEcccCceeEeecCcccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEA----GNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~----~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||+|||++     ||||.||+++....    ...++++|||.+......   ....++..|+|   |    |.
T Consensus       122 i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~---~~~~~~~~~~a---P----e~  191 (274)
T cd05076         122 VAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSR---EERVERIPWIA---P----EC  191 (274)
T ss_pred             HHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccceeeecCCccccccccc---cccccCCcccC---c----hh
Confidence            478999999999998     78999999975311    113789999987543221   22457888999   9    76


Q ss_pred             hhc-cCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          81 IIN-VGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        81 ~~~-~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      +.. ..++.               ..|..||. +.+..+....+.    .....|...+.++.++|.+||..+|.+||  
T Consensus       192 ~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~li~~cl~~~p~~Rp--  264 (274)
T cd05076         192 VPGGNSLSTAADKWSFGTTLLEICFDGEVPLK-ERTPSEKERFYE----KKHRLPEPSCKELATLISQCLTYEPTQRP--  264 (274)
T ss_pred             hcCCCCCCcHHHHHHHHHHHHHHHhCCCCCcc-ccChHHHHHHHH----hccCCCCCCChHHHHHHHHHcccChhhCc--
Confidence            643 22322               35899998 655544433222    23455666788999999999999999999  


Q ss_pred             CCCChhhhhcC
Q psy3184         145 QRGGIVDIKKH  155 (185)
Q Consensus       145 ~~~~~~~ll~h  155 (185)
                         ++.+++++
T Consensus       265 ---s~~~il~~  272 (274)
T cd05076         265 ---SFRTILRD  272 (274)
T ss_pred             ---CHHHHHHh
Confidence               45888764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.39  E-value=2.4e-12  Score=101.91  Aligned_cols=128  Identities=11%  Similarity=0.089  Sum_probs=86.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc----cccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI----LRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~----~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.|++.||+|||++     ||||+||+++.+.   .++|+|||.++....+..    .....++..|++   |    |+
T Consensus       112 i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~---P----E~  181 (283)
T cd05080         112 FAQQICEGMAYLHSQHYIHRDLAARNVLLDNDR---LVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYA---V----EC  181 (283)
T ss_pred             HHHHHHHHHHHHHHCCeeccccChheEEEcCCC---cEEEeecccccccCCcchhhccCCCCCCCceeeC---H----hH
Confidence            367999999999998     7999999998753   489999999886644321    122345667999   9    76


Q ss_pred             hhccCcce--------------eccCCCCCCCCChH--H------------HHHHHHhcCCCccCCCCCCCHHHHHHHHH
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPM--Q------------TYNMIINVGIDKIPFPKHVTRTAQSLIKA  132 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~--~------------~~~~i~~~~~~~~~~p~~~s~~~~~li~~  132 (185)
                      +....++.              ++|..||. .....  .            ........+ .....|..++.++.+++.+
T Consensus       182 ~~~~~~~~~~Di~slG~~l~el~tg~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~  259 (283)
T cd05080         182 LKENKFSYASDVWSFGVTLYELLTHCDSKQ-SPPKKFEEMIGPKQGQMTVVRLIELLERG-MRLPCPKNCPQEVYILMKN  259 (283)
T ss_pred             hcccCCCcccccHHHHHHHHHHHhCCCCCC-CCcchhhhhhcccccccchhhhhhhhhcC-CCCCCCCCCCHHHHHHHHH
Confidence            65433332              78888886 32210  0            011111011 1234466788999999999


Q ss_pred             HhhcCcCcccCCCCCChhhhhc
Q psy3184         133 LCKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       133 ~l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      |+..||.+||++     ++++.
T Consensus       260 cl~~~p~~Rps~-----~~i~~  276 (283)
T cd05080         260 CWETEAKFRPTF-----RSLIP  276 (283)
T ss_pred             HhccChhhCCCH-----HHHHH
Confidence            999999999944     77663

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>KOG4257|consensus

Probab=99.39  E-value=2.8e-13  Score=115.56  Aligned_cols=123  Identities=15%  Similarity=0.220  Sum_probs=102.7

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCC--ccccccCCCcccccch
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGR--PPFCVMNDPMQTYNMI   81 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt--~~y~a~~~P~~~~E~~   81 (185)
                      +...||..|+.|||+.     ||-.+|||+.+.   ..+||+|||+++.+........-.|.  ..|||   |    |.+
T Consensus       495 ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp---~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWma---P----ESI  564 (974)
T KOG4257|consen  495 LYCYQICTALAYLESKRFVHRDIAARNILVSSP---QCVKLADFGLSRYLEDDAYYKASRGKLPIKWMA---P----ESI  564 (974)
T ss_pred             HHHHHHHHHHHHHHhhchhhhhhhhhheeecCc---ceeeecccchhhhccccchhhccccccceeecC---c----ccc
Confidence            4588999999999997     889999999994   35999999999988765433333443  46999   9    999


Q ss_pred             hccCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          82 INVGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        82 ~~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      +...++.               +.|..||. +....+++-.|. +| .+++.|+.+++.+..|+.+|+.++|.+||.+
T Consensus       565 NfRrFTtASDVWMFgVCmWEIl~lGvkPfq-gvkNsDVI~~iE-nG-eRlP~P~nCPp~LYslmskcWayeP~kRPrf  639 (974)
T KOG4257|consen  565 NFRRFTTASDVWMFGVCMWEILSLGVKPFQ-GVKNSDVIGHIE-NG-ERLPCPPNCPPALYSLMSKCWAYEPSKRPRF  639 (974)
T ss_pred             chhcccchhhHHHHHHHHHHHHHhcCCccc-cccccceEEEec-CC-CCCCCCCCCChHHHHHHHHHhccCcccCCcH
Confidence            8887776               88999999 877777777777 44 6888999999999999999999999999976

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.39  E-value=3.1e-12  Score=99.56  Aligned_cols=124  Identities=14%  Similarity=0.107  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCC----CCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGE----AGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~----~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      +.||+.||.|||++     ||||+||+++.+.    ....++++|||.+.....   .....++..|+|   |    |++
T Consensus       107 ~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~~~~y~a---P----E~~  176 (259)
T cd05037         107 AKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLS---REERVERIPWIA---P----ECI  176 (259)
T ss_pred             HHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCccccccc---ccccccCCCccC---h----hhh
Confidence            67999999999997     7999999998753    112489999999876543   223457788999   9    766


Q ss_pred             hcc--Ccce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          82 INV--GIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        82 ~~~--~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ...  .++.              ++ |..||. ..+.........    .....|...+.++.+++.+||..+|.+||  
T Consensus       177 ~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~li~~~l~~~p~~Rp--  249 (259)
T cd05037         177 RNGQASLTIAADKWSFGTTLLEICSNGEEPLS-TLSSSEKERFYQ----DQHRLPMPDCAELANLINQCWTYDPTKRP--  249 (259)
T ss_pred             cCCCCCcchhhHHHHHHHHHHHHHhCCCCCcc-cCCchhHHHHHh----cCCCCCCCCchHHHHHHHHHhccChhhCC--
Confidence            544  2322              45 688887 554443333332    12223333458999999999999999999  


Q ss_pred             CCCChhhhhc
Q psy3184         145 QRGGIVDIKK  154 (185)
Q Consensus       145 ~~~~~~~ll~  154 (185)
                         ++.++++
T Consensus       250 ---t~~~il~  256 (259)
T cd05037         250 ---SFRAILR  256 (259)
T ss_pred             ---CHHHHHH
Confidence               4477764

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.36  E-value=6.7e-12  Score=98.70  Aligned_cols=128  Identities=11%  Similarity=0.106  Sum_probs=86.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.|++.|++|||+.     |+||+||+++.+.   .++++|||.+.......   ......|+..|+|   |    |++
T Consensus       105 ~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~---~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  174 (269)
T cd05087         105 MACEIALGLLHLHKNNFIHSDLALRNCLLTADL---TVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIA---P----ELV  174 (269)
T ss_pred             HHHHHHHHHHHHHHCCEeccccCcceEEEcCCC---cEEECCccccccccCcceeecCCCcCCcccccC---H----hHh
Confidence            367999999999987     7999999998853   49999999887543321   1223567888999   9    665


Q ss_pred             hcc-------Ccce--------------e-ccCCCCCCCCChHHHHHHHHhcCCCccCCC---CCCCHHHHHHHHHHhhc
Q psy3184          82 INV-------GIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGIDKIPFP---KHVTRTAQSLIKALCKE  136 (185)
Q Consensus        82 ~~~-------~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p---~~~s~~~~~li~~~l~~  136 (185)
                      ...       .++.              + .|..||. ..+..+...............|   ...+..+.+++.+|+ .
T Consensus       175 ~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~  252 (269)
T cd05087         175 DEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYR-HLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-L  252 (269)
T ss_pred             ccccccccccCCCccchhHHHHHHHHHHHhCCCCCCC-CCChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHHHHh-c
Confidence            421       1111              4 4999998 5555554433331221122222   357899999999998 5


Q ss_pred             CcCcccCCCCCChhhhhc
Q psy3184         137 SPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       137 dp~~R~~~~~~~~~~ll~  154 (185)
                      +|.+||+     +++|..
T Consensus       253 ~P~~Rpt-----~~~l~~  265 (269)
T cd05087         253 QPEQRPS-----AEEVHL  265 (269)
T ss_pred             CcccCCC-----HHHHHH
Confidence            8999994     477763

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.36  E-value=5.7e-12  Score=99.03  Aligned_cols=128  Identities=10%  Similarity=0.020  Sum_probs=87.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     |+||.||+++.+.   .++++|||.+.......   ......+++.|+|   |    |++
T Consensus       105 ~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  174 (269)
T cd05042         105 MACEVASGLLWLHQADFIHSDLALRNCQLTADL---SVKIGDYGLALEQYPEDYYITKDCHAVPLRWLA---P----ELV  174 (269)
T ss_pred             HHHHHHHHHHHHHhcCEecccccHhheEecCCC---cEEEeccccccccccchheeccCCCCCcccccC---H----HHH
Confidence            467999999999998     7999999998853   38999999886443221   1123345678999   9    776


Q ss_pred             hcc-------Ccce--------------ec-cCCCCCCCCChHHHHHHHHhcCCC---ccCCCCCCCHHHHHHHHHHhhc
Q psy3184          82 INV-------GIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGID---KIPFPKHVTRTAQSLIKALCKE  136 (185)
Q Consensus        82 ~~~-------~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~---~~~~p~~~s~~~~~li~~~l~~  136 (185)
                      ...       .++.              ++ |..||. .....+....+...+..   .+..+..++....+++..|+ .
T Consensus       175 ~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  252 (269)
T cd05042         175 EIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYP-DLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-L  252 (269)
T ss_pred             hhccccccccccchhhHHHHHHHHHHHHHhCCCCCCC-cCCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHHHHh-c
Confidence            432       1111              44 788998 66555555554422211   12333568899999999998 4


Q ss_pred             CcCcccCCCCCChhhhhc
Q psy3184         137 SPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       137 dp~~R~~~~~~~~~~ll~  154 (185)
                      ||.+||+     +++++.
T Consensus       253 dp~~Rpt-----~~~v~~  265 (269)
T cd05042         253 DPETRPT-----AEEVHE  265 (269)
T ss_pred             CcccccC-----HHHHHH
Confidence            9999994     466653

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.35  E-value=1.1e-11  Score=97.63  Aligned_cols=127  Identities=12%  Similarity=0.070  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.||+.||+|||+.     |+||+||+++.+  + .++++|||.+......   ......+|+..|+|   |    |++.
T Consensus       105 ~~~i~~al~~lH~~~i~H~dikp~nil~~~~--~-~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  174 (268)
T cd05086         105 ACEIAAGVTHMHKHNFLHSDLALRNCFLTSD--L-TVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLA---P----ELVG  174 (268)
T ss_pred             HHHHHHHHHHHHHCCeeccCCccceEEEcCC--c-cEEecccccccccCcchhhhcccCCcCcccccC---c----hhcc
Confidence            67999999999997     799999999875  3 3999999987533221   12234678899999   9    6553


Q ss_pred             cc-------Ccce--------------e-ccCCCCCCCCChHHHHHHHHhcCC---CccCCCCCCCHHHHHHHHHHhhcC
Q psy3184          83 NV-------GIDN--------------I-FSRPPFCVMNDPMQTYNMIINVGI---DKIPFPKHVTRTAQSLIKALCKES  137 (185)
Q Consensus        83 ~~-------~~~~--------------l-~g~~Pf~~~~~~~~~~~~i~~~~~---~~~~~p~~~s~~~~~li~~~l~~d  137 (185)
                      ..       .++.              + .|..||. ..+..+.+..+...+.   ..+.++..+++.+.+++..|+ .+
T Consensus       175 ~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~  252 (268)
T cd05086         175 EFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYS-HLSDREVLNHVIKDQQVKLFKPQLELPYSERWYEVLQFCW-LS  252 (268)
T ss_pred             cccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHHhhcccccCCCccCCCCcHHHHHHHHHHh-hC
Confidence            21       1111              3 3677997 6666666665542221   123344568999999999998 58


Q ss_pred             cCcccCCCCCChhhhhc
Q psy3184         138 PAERLGYQRGGIVDIKK  154 (185)
Q Consensus       138 p~~R~~~~~~~~~~ll~  154 (185)
                      |.+||     +++++++
T Consensus       253 P~~Rp-----~~~~i~~  264 (268)
T cd05086         253 PEKRA-----TAEEVHR  264 (268)
T ss_pred             cccCC-----CHHHHHH
Confidence            99999     5577753

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.34  E-value=7.5e-12  Score=99.24  Aligned_cols=127  Identities=12%  Similarity=0.159  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc----cccccCCccccccCCCcccccch
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI----LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~----~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ..||+.||+|||++     |+||+||+++.+.   .++++|||.+..+.....    .....|+..|+|   |    |++
T Consensus       115 ~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---p----E~~  184 (284)
T cd05079         115 AVQICKGMDYLGSRQYVHRDLAARNVLVESEH---QVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYA---P----ECL  184 (284)
T ss_pred             HHHHHHHHHHHHHCCeeecccchheEEEcCCC---CEEECCCccccccccCccceeecCCCCCCccccC---H----HHh
Confidence            57999999999998     7899999998753   389999999876644321    224567778999   9    766


Q ss_pred             hccCcce--------------eccCCCCCCC-------------C-ChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHH
Q psy3184          82 INVGIDN--------------IFSRPPFCVM-------------N-DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKAL  133 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~-------------~-~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~  133 (185)
                      .+..++.              +++..|+...             . ........+. .+ .....+..++.++.+|+.+|
T Consensus       185 ~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~  262 (284)
T cd05079         185 IQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLE-EG-KRLPRPPNCPEEVYQLMRKC  262 (284)
T ss_pred             ccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHH-cC-ccCCCCCCCCHHHHHHHHHH
Confidence            5543332              4444443200             0 0111111222 11 23445567899999999999


Q ss_pred             hhcCcCcccCCCCCChhhhhc
Q psy3184         134 CKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       134 l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      |..||.+||     ++++++.
T Consensus       263 l~~~p~~Rp-----t~~~il~  278 (284)
T cd05079         263 WEFQPSKRT-----TFQNLIE  278 (284)
T ss_pred             ccCCcccCc-----CHHHHHH
Confidence            999999999     5588765

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>KOG1026|consensus

Probab=99.33  E-value=5.1e-12  Score=110.61  Aligned_cols=122  Identities=15%  Similarity=0.201  Sum_probs=99.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccC---CccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSG---RPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~g---t~~y~a~~~P~~~~E~~   81 (185)
                      .|.||+.|++||-++     ||-.+|+||..+.   .|||+|||+++.+=..........   -..||+   |    |.|
T Consensus       608 iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l---~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMp---p----EsI  677 (774)
T KOG1026|consen  608 IATQIAAGMEYLSSHHFVHRDLATRNCLVGENL---VVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMP---P----ESI  677 (774)
T ss_pred             HHHHHHHHHHHHHhCcccccchhhhhceeccce---EEEecccccchhhhhhhhhcccCCceeeeecCC---H----HHh
Confidence            489999999999876     9999999999964   499999999985422111111111   257999   9    988


Q ss_pred             hccCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          82 INVGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        82 ~~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ....|+.               -+|..||+ +...+++++.|. .|. -++-|+.++.++.+|+..|++.+|.+||++
T Consensus       678 ly~kFTteSDVWs~GVvLWEIFsyG~QPy~-glSn~EVIe~i~-~g~-lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF  752 (774)
T KOG1026|consen  678 LYGKFTTESDVWSFGVVLWEIFSYGKQPYY-GLSNQEVIECIR-AGQ-LLSCPENCPTEVYSLMLECWNENPKRRPSF  752 (774)
T ss_pred             hcCcccchhhhhhhhhhhhhhhccccCccc-ccchHHHHHHHH-cCC-cccCCCCCCHHHHHHHHHHhhcCcccCCCH
Confidence            8777776               78999999 888899999998 553 388899999999999999999999999955

>KOG0590|consensus

Probab=99.31  E-value=4.7e-12  Score=110.52  Aligned_cols=140  Identities=18%  Similarity=0.264  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-----cccccccCCccccccCCCcccccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-----KILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-----~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      -.|++.||+|+|+.     |+|++|+++..+.   .++++|||.+.....+     .....++|+..|+|   |    |+
T Consensus       426 fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g---~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~a---p----E~  495 (601)
T KOG0590|consen  426 FKQLLRGVKYLHSMGLAHRDLKLENLLVTENG---ILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLA---P----EV  495 (601)
T ss_pred             HHHHHHHHHHHHhcCceeccCccccEEEecCC---ceEEeecCcceeeccCcchhhhhhcCcccCCcCcC---c----cc
Confidence            35889999999998     6899999999863   3999999998866443     23456899999999   9    99


Q ss_pred             hhccCcce---------------eccCCCCCCCCChHHHHHHHHhcCCC-----ccCCCCCCCHHHHHHHHHHhhcCcCc
Q psy3184          81 IINVGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGID-----KIPFPKHVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        81 ~~~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~-----~~~~p~~~s~~~~~li~~~l~~dp~~  140 (185)
                      +.+..|+.               .+|+.||.........+.........     +..+-..++.+.+.+|.+||+.||.+
T Consensus       496 ~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~  575 (601)
T KOG0590|consen  496 LTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTK  575 (601)
T ss_pred             ccccccCcchhhhhhccceEEEEecCCCccccccccccchhhhccccccccccChHHHHHhchhhHHHHHHHHccCChhh
Confidence            99888886               78899997433322221111101101     11112457899999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCCChhh
Q psy3184         141 RLGYQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       141 R~~~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                      |.     ++++|++.+||+.+.-..
T Consensus       576 R~-----ti~~i~~d~W~~~i~~c~  595 (601)
T KOG0590|consen  576 RI-----TIEQILNDEWIRSIECCH  595 (601)
T ss_pred             ee-----cHHHHhhChHhhhcceEE
Confidence            99     669999999999876543

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.31  E-value=2e-11  Score=96.28  Aligned_cols=127  Identities=13%  Similarity=0.141  Sum_probs=87.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc----ccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL----RLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~----~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.|++.||+|||++     |++|+||+++.+.   .++++|||.+.........    ....++..|++   |    |.
T Consensus       114 ~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~---P----e~  183 (284)
T cd05038         114 FSSQICKGMDYLGSQRYIHRDLAARNILVESED---LVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYA---P----EC  183 (284)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCC---CEEEcccccccccccCCcceeccCCCCCcccccC---c----HH
Confidence            478999999999998     7899999999863   4999999999876532211    12234556899   9    76


Q ss_pred             hhccCcce--------------eccCCCCCCCCChH---------------HHHHHHHhcCCCccCCCCCCCHHHHHHHH
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPM---------------QTYNMIINVGIDKIPFPKHVTRTAQSLIK  131 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~---------------~~~~~i~~~~~~~~~~p~~~s~~~~~li~  131 (185)
                      +....++.              ++|..||. .....               .....+. . ......|..++.++.+++.
T Consensus       184 ~~~~~~~~~~Di~slG~~l~el~tg~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~li~  260 (284)
T cd05038         184 LRTSKFSSASDVWSFGVTLYELFTYGDPSQ-SPPAEFLRMIGIAQGQMIVTRLLELLK-E-GERLPRPPSCPDEVYDLMK  260 (284)
T ss_pred             HccCCCCcccchHHHhhhhheeeccCCCcc-cccchhccccccccccccHHHHHHHHH-c-CCcCCCCccCCHHHHHHHH
Confidence            65443332              78888886 32211               1122222 1 1234445667899999999


Q ss_pred             HHhhcCcCcccCCCCCChhhhhc
Q psy3184         132 ALCKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       132 ~~l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      +||..+|.+||     ++.+++.
T Consensus       261 ~cl~~~p~~Rp-----t~~ei~~  278 (284)
T cd05038         261 LCWEAEPQDRP-----SFADLIL  278 (284)
T ss_pred             HHhccChhhCC-----CHHHHHH
Confidence            99999999999     4477654

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>KOG2345|consensus

Probab=99.28  E-value=2e-12  Score=99.57  Aligned_cols=125  Identities=16%  Similarity=0.204  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHhhc-------CCCCCceEEccCCCCCeeEEcccCceeEeec---Cc-------ccccccCCccccccCCC
Q psy3184          12 LQVKEMVESMHQA-------EYKADNYVITEGEAGNDLFVSAEGEFQVIKD---GK-------ILRLLSGRPPFCVMNDP   74 (185)
Q Consensus        12 ~qi~~~l~~lH~~-------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~---~~-------~~~~~~gt~~y~a~~~P   74 (185)
                      .+|..||++||..       |+||.||++.++.   ..++.|||.+....-   ++       .-..-..|..|.|   |
T Consensus       134 ~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~---~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRA---P  207 (302)
T KOG2345|consen  134 LGICRGLEALHEKEPPYAHRDIKPANILLSDSG---LPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRA---P  207 (302)
T ss_pred             HHHHHHHHHHhccCCcccccCCCcceeEecCCC---ceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccC---c
Confidence            4567899999987       8999999999842   389999998864432   11       0012245889999   9


Q ss_pred             cccccchhccCcce-----------------eccCCCCCCCCC-hH-HHHHHHHhcCCCccCCC--CCCCHHHHHHHHHH
Q psy3184          75 MQTYNMIINVGIDN-----------------IFSRPPFCVMND-PM-QTYNMIINVGIDKIPFP--KHVTRTAQSLIKAL  133 (185)
Q Consensus        75 ~~~~E~~~~~~~~~-----------------l~g~~Pf~~~~~-~~-~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~  133 (185)
                          |++.-+.+..                 ++|..||. ..- .. ++.-.+.   ...+.+|  ..+|..+.++|+.|
T Consensus       208 ----ELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe-~~~~~GgSlaLAv~---n~q~s~P~~~~yse~l~~lik~m  279 (302)
T KOG2345|consen  208 ----ELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFE-RIYQQGGSLALAVQ---NAQISIPNSSRYSEALHQLIKSM  279 (302)
T ss_pred             ----hheecccCcccccccchhhhhHHHHHHHHcCCcch-HHhhcCCeEEEeee---ccccccCCCCCccHHHHHHHHHH
Confidence                8887655444                 88999996 110 00 0000111   1356777  34899999999999


Q ss_pred             hhcCcCcccCCCCCChhhhhcC
Q psy3184         134 CKESPAERLGYQRGGIVDIKKH  155 (185)
Q Consensus       134 l~~dp~~R~~~~~~~~~~ll~h  155 (185)
                      |+.||.+||     ++.+++.+
T Consensus       280 lqvdP~qRP-----~i~~ll~~  296 (302)
T KOG2345|consen  280 LQVDPNQRP-----TIPELLSK  296 (302)
T ss_pred             hcCCcccCC-----CHHHHHHH
Confidence            999999999     55777653

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.28  E-value=1.2e-11  Score=109.64  Aligned_cols=123  Identities=28%  Similarity=0.538  Sum_probs=95.6

Q ss_pred             eEEcccCceeEeecCcc---cccccCCccccccCCCcccccchhccCcce--------------eccCCCCCCCCChHHH
Q psy3184          42 LFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQT  104 (185)
Q Consensus        42 i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~  104 (185)
                      .++.+||.++....+..   ....+||+.|||   |    |++.+..|+.              ++|.+||. +.+....
T Consensus       517 ~~~~~~~~~~~~~~g~~~~~~~~~vGT~~Y~A---P----E~l~~~~~~~~~DiwSlG~il~ElltG~~pf~-~~~~~~~  588 (669)
T cd05610         517 KIGTPYRTPKSVRRGAAPVEGERILGTPDYLA---P----ELLLGKPHGPAVDWWALGVCLFEFLTGIPPFN-DETPQQV  588 (669)
T ss_pred             cccccCCCchhhhcccccccCCceeeCccccC---H----HHcCCCCCCcHHHHHHHHHHHHHHHHCCCCCC-CCCHHHH
Confidence            57788888776654322   334689999999   9    8887766665              89999999 8888888


Q ss_pred             HHHHHhcCCCccCCC---CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCC
Q psy3184         105 YNMIINVGIDKIPFP---KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASI  181 (185)
Q Consensus       105 ~~~i~~~~~~~~~~p---~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~  181 (185)
                      +..+..   ..+.+|   ..++.++.+++.+||..||.+|+     ++.+++.||||..++|......  .+||.|.-..
T Consensus       589 ~~~il~---~~~~~p~~~~~~~~~~~~~l~~lL~~dP~~R~-----ta~e~l~h~~~~~~~~~~~~~~--~~~~~~~~~~  658 (669)
T cd05610         589 FQNILN---RDIPWPEGEEKLSVNAQNAIEILLTMDPTKRA-----GLKELKQHPLFHGVDWENLQNQ--TMPFIPQPDD  658 (669)
T ss_pred             HHHHHh---cCCCCCcccccCCHHHHHHHHHHcccChhHCc-----CHHHHHhCHhhcCCCHHHhccc--CCCCCCCCCC
Confidence            888772   233333   46789999999999999999999     5699999999999999887765  5777775544


Q ss_pred             C
Q psy3184         182 L  182 (185)
Q Consensus       182 ~  182 (185)
                      .
T Consensus       659 ~  659 (669)
T cd05610         659 E  659 (669)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.27  E-value=3.4e-11  Score=95.32  Aligned_cols=128  Identities=10%  Similarity=0.132  Sum_probs=84.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc----ccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL----RLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~----~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.|++.||.|||++     ||||+||+++.+.   .++++|||++..+......    ....++..|+|   |    |+
T Consensus       113 ~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  182 (284)
T cd05081         113 YASQICKGMEYLGSKRYVHRDLATRNILVESEN---RVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYA---P----ES  182 (284)
T ss_pred             HHHHHHHHHHHHHHCCceeccCCHhhEEECCCC---eEEECCCcccccccCCCcceeecCCCCCceEeeC---H----HH
Confidence            478999999999998     7899999998753   3899999998866443211    11223456999   9    77


Q ss_pred             hhccCcce--------------eccCCCCCCCCChH---------------HHHHHHHhcCCCccCCCCCCCHHHHHHHH
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPM---------------QTYNMIINVGIDKIPFPKHVTRTAQSLIK  131 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~---------------~~~~~i~~~~~~~~~~p~~~s~~~~~li~  131 (185)
                      +.+..++.              ++|..++. .....               .....+... ...+..+..++.++.+|+.
T Consensus       183 ~~~~~~~~~~Di~slG~~l~el~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~  260 (284)
T cd05081         183 LTESKFSVASDVWSFGVVLYELFTYSDKSC-SPPAEFMRMMGNDKQGQMIVYHLIELLKN-NGRLPAPPGCPAEIYAIMK  260 (284)
T ss_pred             hccCCcChHHHHHHHHHHHHHHhhcCCcCC-CcchhhhhhcccccccccchHHHHHHHhc-CCcCCCCCCCCHHHHHHHH
Confidence            76544443              44544443 11100               001112211 1233445678999999999


Q ss_pred             HHhhcCcCcccCCCCCChhhhhc
Q psy3184         132 ALCKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       132 ~~l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      +||..+|.+||     ++++++.
T Consensus       261 ~cl~~~p~~Rp-----t~~ei~~  278 (284)
T cd05081         261 ECWNNDPSQRP-----SFSELAL  278 (284)
T ss_pred             HHccCChhhCC-----CHHHHHH
Confidence            99999999999     5577764

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG0984|consensus

Probab=99.27  E-value=1.4e-11  Score=92.94  Aligned_cols=102  Identities=17%  Similarity=0.236  Sum_probs=74.7

Q ss_pred             cHHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .|.-++.|++|||++      |+||.||||+.+.   .+|++|||++..+...--.+--.|+-.|||   ||.+.--.++
T Consensus       153 Ia~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~G---qVKiCDFGIsG~L~dSiAkt~daGCkpYma---PEri~~e~n~  226 (282)
T KOG0984|consen  153 IAVSVVHALEFLHSKLSVIHRDVKPSNILINYDG---QVKICDFGISGYLVDSIAKTMDAGCKPYMA---PERINPELNQ  226 (282)
T ss_pred             hHHHHHHHHHHHHHHhhhhhccCCcceEEEccCC---cEEEcccccceeehhhhHHHHhcCCCccCC---hhhcCcccCc
Confidence            378899999999997      9999999999964   399999999987755433333578999999   9333333333


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP  119 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p  119 (185)
                      .+|+-              .+++.||....++.+.+..++.  ...+..|
T Consensus       227 ~gY~vksDvWSLGItmiElA~lr~PY~~w~tpF~qLkqvVe--ep~P~Lp  274 (282)
T KOG0984|consen  227 KGYSVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQVVE--EPSPQLP  274 (282)
T ss_pred             ccceeehhhhhhhhhhhhhhhccccccccCCHHHHHHHHhc--CCCCCCc
Confidence            46664              7888998766777788777773  2345555

>KOG1989|consensus

Probab=99.21  E-value=1.4e-11  Score=107.93  Aligned_cols=120  Identities=21%  Similarity=0.303  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHhhc-------CCCCCceEEccCCCCCeeEEcccCceeEeecCc-cc---------ccccCCccccccCC
Q psy3184          11 TLQVKEMVESMHQA-------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-IL---------RLLSGRPPFCVMND   73 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~---------~~~~gt~~y~a~~~   73 (185)
                      ..|+++||.+||..       |||-+|+||..+  + ++||+|||.+......- ..         -...-|+.|.|   
T Consensus       150 f~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~--g-~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRs---  223 (738)
T KOG1989|consen  150 FYDVCEAVAAMHYLKPPIIHRDLKIENVLLSAD--G-NYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRS---  223 (738)
T ss_pred             HHHHHHHHHHHhcCCCccchhhhhhhheEEcCC--C-CEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccC---
Confidence            56888999999997       899999999996  3 49999999875322110 00         01235899999   


Q ss_pred             Ccccccchhc---cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC--CCCHHHHHHHHHHh
Q psy3184          74 PMQTYNMIIN---VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALC  134 (185)
Q Consensus        74 P~~~~E~~~~---~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~--~~s~~~~~li~~~l  134 (185)
                      |    ||+.-   .+.+.              ++...||. ....-    .|. .  ..+.||.  .+|..+++||+.||
T Consensus       224 P----EMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe-~sg~l----aIl-n--g~Y~~P~~p~ys~~l~~LI~~mL  291 (738)
T KOG1989|consen  224 P----EMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFE-ESGKL----AIL-N--GNYSFPPFPNYSDRLKDLIRTML  291 (738)
T ss_pred             h----HHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcC-cCcce----eEE-e--ccccCCCCccHHHHHHHHHHHHh
Confidence            9    99863   22222              78889998 33211    244 2  3777774  68999999999999


Q ss_pred             hcCcCcccCCCCCChhhhh
Q psy3184         135 KESPAERLGYQRGGIVDIK  153 (185)
Q Consensus       135 ~~dp~~R~~~~~~~~~~ll  153 (185)
                      +.||.+||     .+-+++
T Consensus       292 ~~nP~~RP-----nI~Qv~  305 (738)
T KOG1989|consen  292 QPNPDERP-----NIYQVL  305 (738)
T ss_pred             ccCcccCC-----CHHHHH
Confidence            99999999     555544

>KOG0576|consensus

Probab=99.18  E-value=4.6e-11  Score=102.69  Aligned_cols=132  Identities=16%  Similarity=0.245  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchhc---
Q psy3184          13 QVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMIIN---   83 (185)
Q Consensus        13 qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~~---   83 (185)
                      +.+.|+.|+|+.     |+|..||++...  + .++++|||.+..+.. -.+..++.|||+|||   |    |+...   
T Consensus       120 etl~gl~ylhs~gk~hRdiKGanilltd~--g-DvklaDfgvsaqitati~KrksfiGtpywma---p----Evaaverk  189 (829)
T KOG0576|consen  120 ETLQGLKYLHSQGKIHRDIKGANILLTDE--G-DVKLADFGVSAQITATIAKRKSFIGTPYWMA---P----EVAAVERK  189 (829)
T ss_pred             hhhccchhhhcCCcccccccccceeeccc--C-ceeecccCchhhhhhhhhhhhcccCCccccc---h----hHHHHHhc
Confidence            456789999997     789999999875  3 389999998865543 245668999999999   9    87763   


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccC--CCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIP--FPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~--~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .+|..              .--++|.. ..-++.......+++..++.  -+..++..+.+|++.+|.++|.+||     
T Consensus       190 ggynqlcdiwa~gitAiel~eLqpplf-dlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~altknpKkRp-----  263 (829)
T KOG0576|consen  190 GGYNQLCDIWALGITAIELGELQPPLF-DLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGALTKNPKKRP-----  263 (829)
T ss_pred             ccccccccccccccchhhhhhcCCccc-ccchHHHHHHhhccCCCCCcccCCccchHHHHHHHHHHhcCCCccCC-----
Confidence            34554              11234444 33334433333323433332  2356999999999999999999999     


Q ss_pred             ChhhhhcCCCCCC
Q psy3184         148 GIVDIKKHKWFQG  160 (185)
Q Consensus       148 ~~~~ll~hp~f~~  160 (185)
                      +++.++.|||...
T Consensus       264 taeklL~h~fvs~  276 (829)
T KOG0576|consen  264 TAEKLLQHPFVSQ  276 (829)
T ss_pred             Chhhheeceeecc
Confidence            5599999999864

>KOG1095|consensus

Probab=99.17  E-value=8.2e-11  Score=106.29  Aligned_cols=125  Identities=15%  Similarity=0.200  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCC----ccccccCCCcccccch
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGR----PPFCVMNDPMQTYNMI   81 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt----~~y~a~~~P~~~~E~~   81 (185)
                      +.+|+.|++||+++     ||-.+|+|++..  . .+|+.|||+++-+-. ...+...|.    ..|||   |    |.+
T Consensus       808 a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~--r-~VKIaDFGlArDiy~-~~yyr~~~~a~lPvkWm~---P----Esl  876 (1025)
T KOG1095|consen  808 ALDVAKGMNYLESKHFVHRDLAARNCLLDER--R-VVKIADFGLARDIYD-KDYYRKHGEAMLPVKWMP---P----ESL  876 (1025)
T ss_pred             HHHHhhhhHHHHhCCCcCcchhhhheeeccc--C-cEEEcccchhHhhhh-chheeccCccccceecCC---H----HHH
Confidence            78999999999997     889999999985  3 399999999993321 111122222    46999   9    877


Q ss_pred             hccCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....|+.               -.|..||. +.+..++.......|  ++..|..+++.+.+++..|++.+|++||++  
T Consensus       877 ~d~iFtskSDvWsFGVllWEifslG~~PY~-~~~n~~v~~~~~~gg--RL~~P~~CP~~ly~lM~~CW~~~pe~RP~F--  951 (1025)
T KOG1095|consen  877 KDGIFTSKSDVWSFGVLLWEIFSLGATPYP-SRSNFEVLLDVLEGG--RLDPPSYCPEKLYQLMLQCWKHDPEDRPSF--  951 (1025)
T ss_pred             hhcccccccchhhhHHHHHHHHhCCCCCCC-CcchHHHHHHHHhCC--ccCCCCCCChHHHHHHHHHccCChhhCccH--
Confidence            7665554               78999999 888888888777444  999999999999999999999999999965  


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                         ..|++
T Consensus       952 ---~~i~~  956 (1025)
T KOG1095|consen  952 ---RTIVE  956 (1025)
T ss_pred             ---HHHHh
Confidence               66554

>KOG0200|consensus

Probab=99.15  E-value=2.3e-10  Score=100.44  Aligned_cols=121  Identities=15%  Similarity=0.256  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccc--cccCCc--cccccCCCcccccch
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR--LLSGRP--PFCVMNDPMQTYNMI   81 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~--~~~gt~--~y~a~~~P~~~~E~~   81 (185)
                      +.||+.|++||++.     |+-.+||++..+.   .++++|||+++.........  .-.|+.  .|||   |    |.+
T Consensus       424 a~QIa~GMe~L~~~~~vHRDLAaRNVLi~~~~---~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmA---p----Esl  493 (609)
T KOG0200|consen  424 AYQIANGMEYLASVPCVHRDLAARNVLITKNK---VIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMA---P----ESL  493 (609)
T ss_pred             HHHHHHHHHHHhhCCccchhhhhhhEEecCCC---EEEEccccceeccCCCCceEecCCCCccceeecC---H----HHh
Confidence            78999999999987     7889999999962   48999999998654433222  112223  3999   9    877


Q ss_pred             hccCcce---------------eccCCCCCCCCC-hHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          82 INVGIDN---------------IFSRPPFCVMND-PMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        82 ~~~~~~~---------------l~g~~Pf~~~~~-~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ....|+.               -.|..||. +.. ..++++.+. .| .+...|..++.+..++++.|++.+|++||++
T Consensus       494 ~~~~ft~kSDVWSfGI~L~EifsLG~~PYp-~~~~~~~l~~~l~-~G-~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F  569 (609)
T KOG0200|consen  494 FDRVFTSKSDVWSFGILLWEIFTLGGTPYP-GIPPTEELLEFLK-EG-NRMEQPEHCSDEIYDLMKSCWNADPEDRPTF  569 (609)
T ss_pred             ccCcccccchhhHHHHHHHHHhhCCCCCCC-CCCcHHHHHHHHh-cC-CCCCCCCCCCHHHHHHHHHHhCCCcccCCCH
Confidence            7655554               77899998 654 667777666 44 5778899999999999999999999999976

>KOG0664|consensus

Probab=99.15  E-value=6.8e-11  Score=92.71  Aligned_cols=135  Identities=15%  Similarity=0.258  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchhc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      --||+.||.|||+.     ||||+|++++++   +.+|++|||+++.-+...  ....-+-|-+|.|   |    |++.+
T Consensus       162 lYQILRGLKYLHsA~ILHRDIKPGNLLVNSN---CvLKICDFGLARvee~d~~~hMTqEVVTQYYRA---P----EiLMG  231 (449)
T KOG0664|consen  162 VYQILRGLKYLHTANILHRDIKPGNLLVNSN---CILKICDFGLARTWDQRDRLNMTHEVVTQYYRA---P----ELLMG  231 (449)
T ss_pred             HHHHHhhhHHHhhcchhhccCCCccEEeccC---ceEEecccccccccchhhhhhhHHHHHHHHhcc---H----HHhhc
Confidence            47999999999997     899999999995   348999999998654432  2223355789999   9    99987


Q ss_pred             c-Ccce-------------ecc-CCCCCCCCChHHHHHHHH-----------------------hcCCCccCCC------
Q psy3184          84 V-GIDN-------------IFS-RPPFCVMNDPMQTYNMII-----------------------NVGIDKIPFP------  119 (185)
Q Consensus        84 ~-~~~~-------------l~g-~~Pf~~~~~~~~~~~~i~-----------------------~~~~~~~~~p------  119 (185)
                      . .|+.             +.| +.-|. +.++.+.+..|.                       ..+...++++      
T Consensus       232 aRhYs~AvDiWSVGCIFaELLgRrILFQ-Aq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~k~Ps~~vLYtls  310 (449)
T KOG0664|consen  232 ARRYTGAVDIWSVGCIFAELLQRKILFQ-AAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGLRAPDTQRLYKIA  310 (449)
T ss_pred             chhhcCccceehhhHHHHHHHhhhhhhh-ccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCCCCCCccceeeec
Confidence            4 4554             334 45666 777665554442                       1111222333      


Q ss_pred             --CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         120 --KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       120 --~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                        ..-.-++..++.++|..||.+|.     +.++.+.|++....
T Consensus       311 S~~~~~heav~~~~~~l~~d~dkri-----s~~~A~~~~~~~e~  349 (449)
T KOG0664|consen  311 SPDDKNHEAVDLLQKLLHFDPDKRI-----SVEEALQHRYLEEG  349 (449)
T ss_pred             CCcccchHHHHHHHHHhCCCCcccc-----cHhhhccccccccc
Confidence              12345777888899999999999     66999999987543

>KOG0199|consensus

Probab=99.11  E-value=2.5e-10  Score=98.86  Aligned_cols=123  Identities=14%  Similarity=0.314  Sum_probs=101.5

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccC----CccccccCCCccccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSG----RPPFCVMNDPMQTYN   79 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~g----t~~y~a~~~P~~~~E   79 (185)
                      .++.||+.|++||-++     ||-.+|+++.+.   ..|||+|||+.+-++.+...+...+    -..|+|   |    |
T Consensus       216 dya~QiA~aM~YLeskrlvHRDLAARNlllasp---rtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCa---P----E  285 (1039)
T KOG0199|consen  216 DYAMQIAKAMQYLESKRLVHRDLAARNLLLASP---RTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCA---P----E  285 (1039)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhheeccc---ceeeeecccceeccCCCCcceEecCCCcCcccccC---H----h
Confidence            3589999999999877     788899999883   2499999999998877654443322    235899   9    9


Q ss_pred             chhccCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          80 MIINVGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        80 ~~~~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      .+....|+.               -+|+-||. |.+..+++++|- .+ ..+.-|..+|.++.++++.|+..+|++||++
T Consensus       286 sLrh~kFShaSDvWmyGVTiWEMFtyGEePW~-G~~g~qIL~~iD-~~-erLpRPk~csedIY~imk~cWah~paDRptF  362 (1039)
T KOG0199|consen  286 SLRHRKFSHASDVWMYGVTIWEMFTYGEEPWV-GCRGIQILKNID-AG-ERLPRPKYCSEDIYQIMKNCWAHNPADRPTF  362 (1039)
T ss_pred             HhccccccccchhhhhhhhHHhhhccCCCCCC-CCCHHHHHHhcc-cc-ccCCCCCCChHHHHHHHHHhccCCccccccH
Confidence            998776665               78899999 999999999887 33 5778888999999999999999999999976

>KOG4250|consensus

Probab=99.10  E-value=2.3e-10  Score=98.83  Aligned_cols=124  Identities=17%  Similarity=0.304  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHhhc-----CCCCCceEEccCCCC-CeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc-c
Q psy3184          12 LQVKEMVESMHQA-----EYKADNYVITEGEAG-NDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN-V   84 (185)
Q Consensus        12 ~qi~~~l~~lH~~-----~lkp~Nili~~~~~~-~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~-~   84 (185)
                      ..++.|+.|||.+     ||||+||++..+..| .-.||+|||.++.++.+....+++||+.|++   |    |+... +
T Consensus       127 ~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s~~~S~vGT~~YLh---P----el~E~q~  199 (732)
T KOG4250|consen  127 SDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNSLFTSLVGTEEYLH---P----ELYERQK  199 (732)
T ss_pred             HHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCCeeeeecCchhhcC---h----HHHhhcc
Confidence            3678899999987     899999998765433 3469999999999999999999999999999   9    88884 5


Q ss_pred             Ccce--------------eccCCCCCCCCCh----HHHHHHHHhcCC------------------CccCCCCCCCHHHH-
Q psy3184          85 GIDN--------------IFSRPPFCVMNDP----MQTYNMIINVGI------------------DKIPFPKHVTRTAQ-  127 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~----~~~~~~i~~~~~------------------~~~~~p~~~s~~~~-  127 (185)
                      .|+.              .+|..||.-...+    +-.+..+. ...                  ..+++|..+|..+. 
T Consensus       200 ~y~~tVDLWS~GvtlY~caTG~lPF~p~~~pk~~~~~~~~~~t-kkp~~v~i~~~~~eNgpv~~s~~lP~p~~Ls~~l~~  278 (732)
T KOG4250|consen  200 KYTATVDLWSFGVTLYECATGELPFIPFGGPKNNKEIMWHIIT-KKPSGVAIGAQEEENGPVEWSSTLPQPNHLSRGLAT  278 (732)
T ss_pred             CcCceeehhhhhhHHHHHhccCCCCCcCCCccccchhhhhhhc-cCCCceeEeeecccCCceeeeccCCCcccccHHHHh
Confidence            5554              9999999532222    23333332 111                  12244445555544 


Q ss_pred             ---HHHHHHhhcCcCcccC
Q psy3184         128 ---SLIKALCKESPAERLG  143 (185)
Q Consensus       128 ---~li~~~l~~dp~~R~~  143 (185)
                         .++..+|..+|++|.+
T Consensus       279 ~~~kwLa~~L~~~~~~~~~  297 (732)
T KOG4250|consen  279 RLTKWLASMLEWNPRKRGH  297 (732)
T ss_pred             hhhHHHHHHHhhhHHHhCC
Confidence               4566788889999983

>KOG0194|consensus

Probab=99.09  E-value=3.7e-10  Score=95.38  Aligned_cols=122  Identities=14%  Similarity=0.162  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccc-cCCccccccCCCcccccchhcc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLL-SGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~-~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ..+.+.||+|||++     ||-.+|+|++.+.   .+|++|||+++.-..-...... ---..|+|   |    |.+...
T Consensus       268 ~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~---~vKISDFGLs~~~~~~~~~~~~~klPirWLA---P----Etl~~~  337 (474)
T KOG0194|consen  268 CYDAARGLEYLHSKNCIHRDIAARNCLYSKKG---VVKISDFGLSRAGSQYVMKKFLKKLPIRWLA---P----ETLNTG  337 (474)
T ss_pred             HHHHHhHHHHHHHCCCcchhHhHHHheecCCC---eEEeCccccccCCcceeeccccccCcceecC---h----hhhccC
Confidence            67899999999998     7778999999853   2799999997643211111111 12357999   9    888776


Q ss_pred             Ccce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          85 GIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        85 ~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      -|+.               ..|..||. +....++...|...+ .+...|...+.++..++.+|+..||++|+++
T Consensus       338 ~~s~kTDV~sfGV~~~Eif~~g~~Py~-g~~~~~v~~kI~~~~-~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm  410 (474)
T KOG0194|consen  338 IFSFKTDVWSFGVLLWEIFENGAEPYP-GMKNYEVKAKIVKNG-YRMPIPSKTPKELAKVMKQCWKKDPEDRPTM  410 (474)
T ss_pred             ccccccchhheeeeEEeeeccCCCCCC-CCCHHHHHHHHHhcC-ccCCCCCCCHHHHHHHHHHhccCChhhccCH
Confidence            6654               45788999 999899999995233 4566777889999999999999999999976

>KOG1187|consensus

Probab=98.98  E-value=1.8e-09  Score=89.29  Aligned_cols=129  Identities=12%  Similarity=0.095  Sum_probs=79.5

Q ss_pred             cHHHHHHHHHHHhhc--------CCCCCceEEccCCCCCeeEEcccCceeEeec-Ccccccc-cCCccccccCCCccccc
Q psy3184          10 DTLQVKEMVESMHQA--------EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLL-SGRPPFCVMNDPMQTYN   79 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~--------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~-~gt~~y~a~~~P~~~~E   79 (185)
                      .|.+++.||+|||..        |||+.|||++.+.   +.||+|||+++.... .....+. .||..|++   ||++.-
T Consensus       179 Ia~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~---~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~---PEy~~~  252 (361)
T KOG1187|consen  179 IALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDF---NAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLA---PEYAST  252 (361)
T ss_pred             HHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCC---CEEccCccCcccCCccccceeeecCCCCccCC---hhhhcc
Confidence            588999999999985        8999999999875   389999999976654 3333333 89999999   943322


Q ss_pred             -chh--ccCcce-------eccCCCCCCCC--ChHHHHH---HHHhcCC-C---ccCCC-CCCC--HH---HHHHHHHHh
Q psy3184          80 -MII--NVGIDN-------IFSRPPFCVMN--DPMQTYN---MIINVGI-D---KIPFP-KHVT--RT---AQSLIKALC  134 (185)
Q Consensus        80 -~~~--~~~~~~-------l~g~~Pf~~~~--~~~~~~~---~i~~~~~-~---~~~~p-~~~s--~~---~~~li~~~l  134 (185)
                       .+.  ..-|++       ++|+.+.....  ....+..   .....+. .   .+.+. ....  .+   +..+..+|+
T Consensus       253 g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~  332 (361)
T KOG1187|consen  253 GKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCL  332 (361)
T ss_pred             CCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHc
Confidence             111  112444       78888776211  1111111   1111110 0   11111 1222  23   345667899


Q ss_pred             hcCcCcccCC
Q psy3184         135 KESPAERLGY  144 (185)
Q Consensus       135 ~~dp~~R~~~  144 (185)
                      ..+|.+||++
T Consensus       333 ~~~~~~RP~m  342 (361)
T KOG1187|consen  333 RPDPKERPTM  342 (361)
T ss_pred             CcCCCcCcCH
Confidence            9999999965

>KOG0196|consensus

Probab=98.96  E-value=1.9e-09  Score=94.33  Aligned_cols=123  Identities=15%  Similarity=0.220  Sum_probs=95.0

Q ss_pred             HHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCC--ccccccCCCcccccchhcc
Q psy3184          14 VKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGR--PPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        14 i~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt--~~y~a~~~P~~~~E~~~~~   84 (185)
                      |+.|+.||.++     ||-.+|||++++.   ..|++|||+++.+..+.  ...+.-|-  ..|.|   |    |.|...
T Consensus       740 IAsGMkYLsdm~YVHRDLAARNILVNsnL---vCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTA---P----EAIa~R  809 (996)
T KOG0196|consen  740 IASGMKYLSDMNYVHRDLAARNILVNSNL---VCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTA---P----EAIAYR  809 (996)
T ss_pred             HHHHhHHHhhcCchhhhhhhhheeeccce---EEEeccccceeecccCCCccccccCCccceeecC---h----hHhhhc
Confidence            45677888776     7888999999986   37999999999875442  22233333  46899   9    988877


Q ss_pred             Ccce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .++.               .+|..||. ..+.+++++.|. .| .+++-|-.++..+..|+..|+++|-.+||.+     
T Consensus       810 KFTsASDVWSyGIVmWEVmSyGERPYW-dmSNQdVIkaIe-~g-yRLPpPmDCP~aL~qLMldCWqkdR~~RP~F-----  881 (996)
T KOG0196|consen  810 KFTSASDVWSYGIVMWEVMSYGERPYW-DMSNQDVIKAIE-QG-YRLPPPMDCPAALYQLMLDCWQKDRNRRPKF-----  881 (996)
T ss_pred             ccCchhhccccceEEEEecccCCCccc-ccchHHHHHHHH-hc-cCCCCCCCCcHHHHHHHHHHHHHHhhcCCCH-----
Confidence            6665               78999998 777788888887 33 4555567789999999999999999999966     


Q ss_pred             hhhhc
Q psy3184         150 VDIKK  154 (185)
Q Consensus       150 ~~ll~  154 (185)
                      .+|..
T Consensus       882 ~qiV~  886 (996)
T KOG0196|consen  882 AQIVS  886 (996)
T ss_pred             HHHHH
Confidence            66554

>KOG4278|consensus

Probab=98.95  E-value=2.8e-09  Score=91.65  Aligned_cols=120  Identities=17%  Similarity=0.257  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCC---ccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGR---PPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt---~~y~a~~~P~~~~E~~~   82 (185)
                      |.||..|++||..+     ||-.+|+|+..+.   -+|++|||+++++..+ ......|.   ..|.|   |    |.+.
T Consensus       371 AtQIsSaMeYLEkknFIHRDLAARNCLVgEnh---iVKvADFGLsRlMtgD-TYTAHAGAKFPIKWTA---P----EsLA  439 (1157)
T KOG4278|consen  371 ATQISSAMEYLEKKNFIHRDLAARNCLVGENH---IVKVADFGLSRLMTGD-TYTAHAGAKFPIKWTA---P----ESLA  439 (1157)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhccccccc---eEEeeccchhhhhcCC-ceecccCccCcccccC---c----cccc
Confidence            88999999999876     7888999998853   4899999999977543 33334443   46889   9    7665


Q ss_pred             ccCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 NVGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 ~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ...++-               .+|-.||. +.+..+++..+. .| .+..-|+.+++.+..|++.|+..+|.+||.+
T Consensus       440 yNtFSiKSDVWAFGVLLWEIATYGMsPYP-GidlSqVY~LLE-kg-yRM~~PeGCPpkVYeLMraCW~WsPsDRPsF  513 (1157)
T KOG4278|consen  440 YNTFSIKSDVWAFGVLLWEIATYGMSPYP-GIDLSQVYGLLE-KG-YRMDGPEGCPPKVYELMRACWNWSPSDRPSF  513 (1157)
T ss_pred             ccccccchhhHHHHHHHHHHHhcCCCCCC-CccHHHHHHHHh-cc-ccccCCCCCCHHHHHHHHHHhcCCcccCccH
Confidence            433332               78999999 999999988877 33 5788899999999999999999999999965

>KOG1345|consensus

Probab=98.95  E-value=3e-09  Score=83.43  Aligned_cols=129  Identities=15%  Similarity=0.112  Sum_probs=83.7

Q ss_pred             hhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccc
Q psy3184           6 LKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         6 ~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ..++.++|+++||+|||+.     |||.+||||-...-. ++||+|||.....+..  ....-.+..|.+   ||...++
T Consensus       122 ~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~-rvKlcDFG~t~k~g~t--V~~~~~~~~y~~---pe~~~~~  195 (378)
T KOG1345|consen  122 NTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFY-RVKLCDFGLTRKVGTT--VKYLEYVNNYHA---PELCDTV  195 (378)
T ss_pred             HHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCcc-EEEeeecccccccCce--ehhhhhhcccCC---cHHHhhc
Confidence            4567899999999999998     789999999764433 5999999988654332  222233456778   8322222


Q ss_pred             hhccCcce----------------eccCCCCCCCCCh-HHHHHHHHh-cCCCccCCCC---CCCHHHHHHHHHHhhcCcC
Q psy3184          81 IINVGIDN----------------IFSRPPFCVMNDP-MQTYNMIIN-VGIDKIPFPK---HVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        81 ~~~~~~~~----------------l~g~~Pf~~~~~~-~~~~~~i~~-~~~~~~~~p~---~~s~~~~~li~~~l~~dp~  139 (185)
                      .. ..|-.                ++|.+||. .... ...+..-.+ .+...+..|.   .+|+.+..+.++-|..++.
T Consensus       196 ~n-e~~~~~ps~D~WqfGIi~f~cltG~~PWQ-ka~~~d~~Y~~~~~w~~rk~~~~P~~F~~fs~~a~r~Fkk~lt~~~~  273 (378)
T KOG1345|consen  196 VN-EKLVVNPSTDIWQFGIIFFYCLTGKFPWQ-KASIMDKPYWEWEQWLKRKNPALPKKFNPFSEKALRLFKKSLTPRFK  273 (378)
T ss_pred             cc-cceEecccccchheeeeeeeeecCCCcch-hhhccCchHHHHHHHhcccCccCchhhcccCHHHHHHHHHhcCCccc
Confidence            11 11111                99999998 4322 222222110 0113456663   4799999999999999999


Q ss_pred             ccc
Q psy3184         140 ERL  142 (185)
Q Consensus       140 ~R~  142 (185)
                      +|.
T Consensus       274 drc  276 (378)
T KOG1345|consen  274 DRC  276 (378)
T ss_pred             ccc
Confidence            984

>KOG1167|consensus

Probab=98.89  E-value=4.5e-09  Score=86.10  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~  162 (185)
                      ++..+.+|+.+||..||.+|+     ++++.|+||||..++
T Consensus       353 ~~~~~~dlLdk~le~np~kRi-----tAEeALkHpFF~~~~  388 (418)
T KOG1167|consen  353 FPALLLDLLDKCLELNPQKRI-----TAEDALKHPFFDEAD  388 (418)
T ss_pred             ccHHHHHHHHHHccCChhhcc-----cHHHHhcCcCCcchh
Confidence            566889999999999999999     669999999998654

>KOG1025|consensus

Probab=98.88  E-value=7e-09  Score=91.45  Aligned_cols=121  Identities=11%  Similarity=0.123  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccccccc-C--CccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLS-G--RPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~-g--t~~y~a~~~P~~~~E~~~   82 (185)
                      -.||+.|+.|||.+     ||-.+|+|+.+-   +.+++.|||.++++.......+.- |  -+.|||   -    |.+.
T Consensus       804 ~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP---~hvkitdfgla~ll~~d~~ey~~~~gK~pikwma---l----e~i~  873 (1177)
T KOG1025|consen  804 CYQIAKGMKYLEEQRLVHRDLAARNVLVKSP---NHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMA---L----ESIR  873 (1177)
T ss_pred             HHHHHHHHHHHHhcchhhhhhhhhheeecCC---CeEEEEecchhhccCcccccccccccccCcHHHH---H----HHhh
Confidence            46999999999987     778899999983   359999999999887654433322 2  245666   5    8888


Q ss_pred             ccCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 NVGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 ~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ...|+.               -.|..|+. +....++-..+. .| .+++.|+..+-++.-++.+||+.|+..||++
T Consensus       874 ~~~~thqSDVWsfGVtiWElmTFGa~Py~-gi~~~eI~dlle-~g-eRLsqPpiCtiDVy~~mvkCwmid~~~rp~f  947 (1177)
T KOG1025|consen  874 IRKYTHQSDVWSFGVTIWELMTFGAKPYD-GIPAEEIPDLLE-KG-ERLSQPPICTIDVYMVMVKCWMIDADSRPTF  947 (1177)
T ss_pred             ccCCCchhhhhhhhhhHHHHHhcCCCccC-CCCHHHhhHHHh-cc-ccCCCCCCccHHHHHHHHHHhccCcccCccH
Confidence            777775               77899998 887777766665 44 5689999999999999999999999999976

>KOG1165|consensus

Probab=98.87  E-value=1.3e-08  Score=81.91  Aligned_cols=129  Identities=16%  Similarity=0.151  Sum_probs=84.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCC--CCeeEEcccCceeEeecC--------cccccccCCccccccCCC
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEA--GNDLFVSAEGEFQVIKDG--------KILRLLSGRPPFCVMNDP   74 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~--~~~i~l~d~g~~~~~~~~--------~~~~~~~gt~~y~a~~~P   74 (185)
                      .|.|++.-++|+|++     ||||+|+||.+-..  .+.|.++|||+++..-..        ....++.||..||+|||=
T Consensus       129 iA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTH  208 (449)
T KOG1165|consen  129 IAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTH  208 (449)
T ss_pred             HHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeecc
Confidence            589999999999998     89999999986322  245899999999866443        234578999999996664


Q ss_pred             cccccchhcc-----Ccc---eeccCCCCCC--CCChHHHHHHHHhcCCCccCCC-----CCCCHHHHHHHHHHhhcCcC
Q psy3184          75 MQTYNMIINV-----GID---NIFSRPPFCV--MNDPMQTYNMIINVGIDKIPFP-----KHVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        75 ~~~~E~~~~~-----~~~---~l~g~~Pf~~--~~~~~~~~~~i~~~~~~~~~~p-----~~~s~~~~~li~~~l~~dp~  139 (185)
                       ...|.-...     ++-   ++.|..||.+  +.+..+.+++|-   ...-..|     ..++.++...++-.-..+..
T Consensus       209 -lGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKIG---e~Kr~T~i~~Lc~g~P~efa~Yl~yvR~L~F~  284 (449)
T KOG1165|consen  209 -LGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKIG---ETKRSTPIEVLCEGFPEEFATYLRYVRRLDFF  284 (449)
T ss_pred             -ccchhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHhc---cccccCCHHHHHhcCHHHHHHHHHHHHhcCcc
Confidence             111211100     000   1999999983  456778888886   3334444     34555655555544444444


Q ss_pred             ccc
Q psy3184         140 ERL  142 (185)
Q Consensus       140 ~R~  142 (185)
                      +-|
T Consensus       285 E~P  287 (449)
T KOG1165|consen  285 ETP  287 (449)
T ss_pred             cCC
Confidence            444

>KOG1024|consensus

Probab=98.87  E-value=9.7e-09  Score=84.12  Aligned_cols=121  Identities=15%  Similarity=0.196  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccc-cCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLL-SGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~-~gt~~y~a~~~P~~~~E~~~   82 (185)
                      |.|++.|++|||+.     ||-.+|.+|+.-.   .++++|-.+++-+-.+.  +.-.. -....||+   +    |.+.
T Consensus       402 asQla~am~hlh~~~ViHkDiAaRNCvIdd~L---qVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMs---l----Eal~  471 (563)
T KOG1024|consen  402 ASQLAMAMEHLHNHGVIHKDIAARNCVIDDQL---QVKLTDSALSRDLFPGDYHCLGDNENRPVKWMS---L----EALQ  471 (563)
T ss_pred             HHHHHHHHHHHHhcCcccchhhhhcceehhhe---eEEeccchhccccCcccccccCCCCCCcccccC---H----HHHh
Confidence            88999999999997     6778899998854   48999999887542221  11111 11246999   9    9888


Q ss_pred             ccCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 NVGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 ~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ...|+.               ..|..|+. ..++.++...+. .| .++..|..+++++..++.-|+..+|++||++
T Consensus       472 n~~yssasDvWsfGVllWELmtlg~~Pya-eIDPfEm~~ylk-dG-yRlaQP~NCPDeLf~vMacCWallpeeRPsf  545 (563)
T KOG1024|consen  472 NSHYSSASDVWSFGVLLWELMTLGKLPYA-EIDPFEMEHYLK-DG-YRLAQPFNCPDELFTVMACCWALLPEERPSF  545 (563)
T ss_pred             hhhhcchhhhHHHHHHHHHHHhcCCCCcc-ccCHHHHHHHHh-cc-ceecCCCCCcHHHHHHHHHHHhcCcccCCCH
Confidence            777775               67899999 899999998888 44 5788899999999999999999999999965

>KOG1163|consensus

Probab=98.86  E-value=7.8e-09  Score=79.91  Aligned_cols=153  Identities=20%  Similarity=0.227  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--------cccccccCCccccccCCCccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--------KILRLLSGRPPFCVMNDPMQT   77 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--------~~~~~~~gt~~y~a~~~P~~~   77 (185)
                      |.|++.-++|+|.+     ||||+|+|..-+...+.+.++|||+++..-..        .......||..|.++|--   
T Consensus       117 aDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh---  193 (341)
T KOG1163|consen  117 ADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAH---  193 (341)
T ss_pred             HHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhh---
Confidence            89999999999986     99999999987767777999999999865432        233456899999872211   


Q ss_pred             ccchhcc--------Ccce---eccCCCCCC--CCChHHHHHHHHhcCCCccCCC-----CCCCHHHHHHHHHHhhcCcC
Q psy3184          78 YNMIINV--------GIDN---IFSRPPFCV--MNDPMQTYNMIINVGIDKIPFP-----KHVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        78 ~E~~~~~--------~~~~---l~g~~Pf~~--~~~~~~~~~~i~~~~~~~~~~p-----~~~s~~~~~li~~~l~~dp~  139 (185)
                       -.+.+.        +|--   ..|..||.+  +.+..+.+++|.   ....+.|     ..++.|+...+.-|-..-.+
T Consensus       194 -~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~tk~QKyEkI~---EkK~s~~ie~LC~G~P~EF~myl~Y~R~L~F~  269 (341)
T KOG1163|consen  194 -LGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQKYEKIS---EKKMSTPIEVLCKGFPAEFAMYLNYCRGLGFE  269 (341)
T ss_pred             -hhhhhhhhhhhhhhcceeeeeecCCCcccccchhhHHHHHHHHH---HhhcCCCHHHHhCCCcHHHHHHHHHHhhcCCC
Confidence             111111        1211   789999983  245567788887   4466666     56889999999988666666


Q ss_pred             cccCCC--CCC---hhhhhcCCCCCCCChhhhhccc
Q psy3184         140 ERLGYQ--RGG---IVDIKKHKWFQGFDWDGLRNQT  170 (185)
Q Consensus       140 ~R~~~~--~~~---~~~ll~hp~f~~~~~~~~~~~~  170 (185)
                      +-|.+.  +..   +-.-++|.+=--.||..+.++.
T Consensus       270 E~Pdy~ylrqlFriLfr~ln~~~d~iyDW~~lkqk~  305 (341)
T KOG1163|consen  270 EKPDYMYLRQLFRILFRTLNHQYDYIYDWTMLKQKS  305 (341)
T ss_pred             CCCcHHHHHHHHHHHHhhccccCCeEeeHHHHHHHh
Confidence            666431  111   1222345544457999887654

>KOG4158|consensus

Probab=98.85  E-value=1.3e-08  Score=83.71  Aligned_cols=142  Identities=18%  Similarity=0.204  Sum_probs=92.8

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCC-CeeEEcccCceeEeec-------CcccccccCCccccccCCC
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAG-NDLFVSAEGEFQVIKD-------GKILRLLSGRPPFCVMNDP   74 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~-~~i~l~d~g~~~~~~~-------~~~~~~~~gt~~y~a~~~P   74 (185)
                      .+.-+|+++|+.|||++     |+|.+|||+.-+... -.+.++|||.+---+.       .+.....-|.-..||   |
T Consensus       344 ~~~laQlLEav~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmA---P  420 (598)
T KOG4158|consen  344 RVILAQLLEAVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMA---P  420 (598)
T ss_pred             HHHHHHHHHHHHHHHHccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecc---h
Confidence            44578999999999997     899999999654322 2378999998742222       123334567788899   9


Q ss_pred             cccccchhcc-------Ccce-------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHh
Q psy3184          75 MQTYNMIINV-------GIDN-------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALC  134 (185)
Q Consensus        75 ~~~~E~~~~~-------~~~~-------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l  134 (185)
                          |+....       .|+.             +....||+ +...+-+-.... ....-+..|+.+++.+++++..+|
T Consensus       421 ----Ei~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY-~rGem~L~~r~Y-qe~qLPalp~~vpp~~rqlV~~lL  494 (598)
T KOG4158|consen  421 ----EIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFY-KRGEMLLDTRTY-QESQLPALPSRVPPVARQLVFDLL  494 (598)
T ss_pred             ----hhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCccc-ccchheechhhh-hhhhCCCCcccCChHHHHHHHHHh
Confidence                776642       2332             44467998 533222211111 111346778899999999999999


Q ss_pred             hcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         135 KESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       135 ~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                      ++||.+|++.  +.+..+++--.+..
T Consensus       495 ~r~pskRvsp--~iAANvl~LsLw~~  518 (598)
T KOG4158|consen  495 KRDPSKRVSP--NIAANVLNLSLWRM  518 (598)
T ss_pred             cCCccccCCc--cHHHhHHHHHHhcC
Confidence            9999999964  23344554443433

>KOG0606|consensus

Probab=98.76  E-value=2.3e-08  Score=90.12  Aligned_cols=161  Identities=25%  Similarity=0.423  Sum_probs=116.2

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec---------------------------
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD---------------------------   55 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~---------------------------   55 (185)
                      +-.-..++.+.+|||..     +++|.|+++..+..   ..+.+++.......                           
T Consensus       907 Rs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh---~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~  983 (1205)
T KOG0606|consen  907 RSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGH---RPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQ  983 (1205)
T ss_pred             cchhHHHHhhhhccccchhhcccccccchhhcccCC---cccCccccccccccccCcCCcccccccCccccccccccccc
Confidence            33456778889999976     78999999876532   67777763221110                           


Q ss_pred             ---C--cccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCcc
Q psy3184          56 ---G--KILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKI  116 (185)
Q Consensus        56 ---~--~~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~  116 (185)
                         .  .......||+.|.+   |    |...+.....              ++|.+||. ...+++++++|.+.....+
T Consensus       984 l~~~~~~~~~~~~~t~~~la---P----e~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~n-a~tpq~~f~ni~~~~~~~p 1055 (1205)
T KOG0606|consen  984 LSADEARRKHAVVGTPDYLA---P----EILLGRRHGSAADWWSSGVCLFEVLTGIPPFN-AETPQQIFENILNRDIPWP 1055 (1205)
T ss_pred             cccchhhccccccCCCcccC---C----cccccccCCCcchhhhhhhhhhhhhcCCCCCC-CcchhhhhhccccCCCCCC
Confidence               0  11234679999999   9    7776644332              99999999 9999999999983222233


Q ss_pred             CCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCC
Q psy3184         117 PFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILR  183 (185)
Q Consensus       117 ~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~  183 (185)
                      .-|...+.++++++..++..+|.+|.+.  ..+.++..|+||++.+|..+..+  ..+|+|...+..
T Consensus      1056 ~g~~~~s~~aq~~~~~ll~~~~~qr~~a--~~~~e~k~~~~~~~~~~~~l~~q--~~~~~p~~~s~~ 1118 (1205)
T KOG0606|consen 1056 EGPEEGSYEAQDLINRLLTEEPTQRLGA--KGAAEVKGHPFFQDVDWENLALQ--KAEFVPQPESTQ 1118 (1205)
T ss_pred             CCccccChhhhhhhhhhhccCchhccCc--ccccccccCCccCCCCccccccc--cCccCCCCCCCC
Confidence            3345689999999999999999999975  23458999999999999988666  345666655443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.71  E-value=1.6e-08  Score=93.03  Aligned_cols=126  Identities=8%  Similarity=0.003  Sum_probs=74.9

Q ss_pred             cHHHHHHHHHHHhh---c-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQ---A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~---~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.|++|||+   .     |+||.||+++.+..   .++. ++.......   .....||+.|||   |    |++
T Consensus       785 i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~---~~~~-~~~~~~~~~---~~~~~~t~~y~a---P----E~~  850 (968)
T PLN00113        785 IAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDE---PHLR-LSLPGLLCT---DTKCFISSAYVA---P----ETR  850 (968)
T ss_pred             HHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCc---eEEE-ecccccccc---CCCccccccccC---c----ccc
Confidence            47899999999993   2     89999999987643   2332 333322211   123468899999   9    776


Q ss_pred             hccCcce--------------eccCCCCCCCCC-----hHHHHHHHHhcCC----CccC------CCCCCCHHHHHHHHH
Q psy3184          82 INVGIDN--------------IFSRPPFCVMND-----PMQTYNMIINVGI----DKIP------FPKHVTRTAQSLIKA  132 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~-----~~~~~~~i~~~~~----~~~~------~p~~~s~~~~~li~~  132 (185)
                      ....|+.              ++|+.||. ...     ..+..........    ..+.      .+.....++.+++.+
T Consensus       851 ~~~~~~~~sDv~S~Gvvl~el~tg~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  929 (968)
T PLN00113        851 ETKDITEKSDIYGFGLILIELLTGKSPAD-AEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALH  929 (968)
T ss_pred             cCCCCCcccchhhHHHHHHHHHhCCCCCC-cccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHh
Confidence            6555543              89999985 221     1111111110000    0011      111123467789999


Q ss_pred             HhhcCcCcccCCCCCChhhhhcC
Q psy3184         133 LCKESPAERLGYQRGGIVDIKKH  155 (185)
Q Consensus       133 ~l~~dp~~R~~~~~~~~~~ll~h  155 (185)
                      |+..||.+||++     .++++.
T Consensus       930 Cl~~~P~~RPt~-----~evl~~  947 (968)
T PLN00113        930 CTATDPTARPCA-----NDVLKT  947 (968)
T ss_pred             hCcCCchhCcCH-----HHHHHH
Confidence            999999999954     776543

>KOG2052|consensus

Probab=98.66  E-value=8.4e-08  Score=79.56  Aligned_cols=128  Identities=13%  Similarity=0.145  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHhhc-------------CCCCCceEEccCCCCCeeEEcccCceeEeecC-----cccccccCCccccccC
Q psy3184          11 TLQVKEMVESMHQA-------------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-----KILRLLSGRPPFCVMN   72 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-------------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-----~~~~~~~gt~~y~a~~   72 (185)
                      +.-+++||.+||-.             |||..|||+.++..   .-++|+|++......     ......+||-.|||  
T Consensus       314 alS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~---C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMA--  388 (513)
T KOG2052|consen  314 ALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGT---CCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMA--  388 (513)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCc---EEEeeceeeEEecccCCcccCCCCCccceeeccC--
Confidence            45678999999975             89999999999742   789999999766553     23456799999999  


Q ss_pred             CCcccccchhccCcce--------------------------eccCCCCCC---CCChHHHHHHHHhcCCCccCCCCCC-
Q psy3184          73 DPMQTYNMIINVGIDN--------------------------IFSRPPFCV---MNDPMQTYNMIINVGIDKIPFPKHV-  122 (185)
Q Consensus        73 ~P~~~~E~~~~~~~~~--------------------------l~g~~Pf~~---~~~~~~~~~~i~~~~~~~~~~p~~~-  122 (185)
                       ||+.-|.+....+..                          -.-++||++   .+...+-..+++=....++.+|..+ 
T Consensus       389 -PEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~ipnrW~  467 (513)
T KOG2052|consen  389 -PEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNIPNRWK  467 (513)
T ss_pred             -hHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHHhcceeecccCCCCCcccc
Confidence             955555554443332                          223578863   1222233333321222456677543 


Q ss_pred             C-H---HHHHHHHHHhhcCcCcccCC
Q psy3184         123 T-R---TAQSLIKALCKESPAERLGY  144 (185)
Q Consensus       123 s-~---~~~~li~~~l~~dp~~R~~~  144 (185)
                      | +   ....+++-|+..+|.-|+++
T Consensus       468 s~~~l~~m~klMkeCW~~Np~aRltA  493 (513)
T KOG2052|consen  468 SDPALRVMAKLMKECWYANPAARLTA  493 (513)
T ss_pred             cCHHHHHHHHHHHHhhcCCchhhhHH
Confidence            2 2   34467888999999999944

>KOG3653|consensus

Probab=98.62  E-value=1.3e-07  Score=78.97  Aligned_cols=123  Identities=11%  Similarity=0.152  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHhhc--------------CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCC
Q psy3184          11 TLQVKEMVESMHQA--------------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMND   73 (185)
Q Consensus        11 ~~qi~~~l~~lH~~--------------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~   73 (185)
                      +.-|+.||.|||..              |||..|||+.+|..   ..|+|||++-.+..+.   .+...+||..|||   
T Consensus       313 a~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlT---ccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMA---  386 (534)
T KOG3653|consen  313 AESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLT---CCIADFGLALRLEPGKPQGDTHGQVGTRRYMA---  386 (534)
T ss_pred             HHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCc---EEeeccceeEEecCCCCCcchhhhhhhhhhcC---
Confidence            56688999999985              89999999999863   7899999998876542   3334799999999   


Q ss_pred             Ccccccchhcc-Ccc-e------------------------e-ccC-----CCCCC----CCChHHHHHHHHhcCCCccC
Q psy3184          74 PMQTYNMIINV-GID-N------------------------I-FSR-----PPFCV----MNDPMQTYNMIINVGIDKIP  117 (185)
Q Consensus        74 P~~~~E~~~~~-~~~-~------------------------l-~g~-----~Pf~~----~~~~~~~~~~i~~~~~~~~~  117 (185)
                      |    |++.+- .+. .                        + .|.     .||..    .-+.+++...++ ....++.
T Consensus       387 P----EvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV-~kK~RP~  461 (534)
T KOG3653|consen  387 P----EVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVV-RKKQRPK  461 (534)
T ss_pred             H----HHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHHH-hhccCCC
Confidence            9    877641 122 1                        1 132     23431    123345555555 3335777


Q ss_pred             CCCCC-----CHHHHHHHHHHhhcCcCcccCC
Q psy3184         118 FPKHV-----TRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus       118 ~p~~~-----s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      +|..+     -.-+++.+.-|+.-||+-|+|+
T Consensus       462 ~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA  493 (534)
T KOG3653|consen  462 IPDAWRKHAGMAVLCETIEECWDHDAEARLTA  493 (534)
T ss_pred             ChhhhhcCccHHHHHHHHHHHcCCchhhhhhh
Confidence            88432     4567889999999999999975

>KOG1094|consensus

Probab=98.62  E-value=8.8e-08  Score=81.95  Aligned_cols=128  Identities=9%  Similarity=0.067  Sum_probs=93.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccc---cccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR---LLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~---~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.|+.||.+.     |+-++|+|++.+.   ++|++|||+++.+=.+....   ..+-...|||   +    |.+
T Consensus       642 i~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~---~iKiadfgmsR~lysg~yy~vqgr~vlpiRwma---w----Esi  711 (807)
T KOG1094|consen  642 ICTQIASGMAYLESLNFVHRDLATRNCLVDGEF---TIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMA---W----ESI  711 (807)
T ss_pred             HHHHHHHHHHHHHhhchhhccccccceeecCcc---cEEecCcccccccccCCceeeecceeeeeeehh---H----HHH
Confidence            478999999999987     7899999999975   49999999998653332111   1223468999   9    988


Q ss_pred             hccCcce----------------eccCCCCCCCCChHHHHHHHHh--c--C-CCccCCCCCCCHHHHHHHHHHhhcCcCc
Q psy3184          82 INVGIDN----------------IFSRPPFCVMNDPMQTYNMIIN--V--G-IDKIPFPKHVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        82 ~~~~~~~----------------l~g~~Pf~~~~~~~~~~~~i~~--~--~-~~~~~~p~~~s~~~~~li~~~l~~dp~~  140 (185)
                      ....++.                +....||. ..+.++...+...  .  + ...+..|..++.++..++..|+.++-.+
T Consensus       712 llgkFttaSDvWafgvTlwE~~~~C~e~Py~-~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~es~~  790 (807)
T KOG1094|consen  712 LLGKFTTASDVWAFGVTLWEVFMLCREQPYS-QLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRRESEQ  790 (807)
T ss_pred             HhccccchhhhhhhHHHHHHHHHHHhhCchh-hhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhchhhhc
Confidence            7766665                67788998 4444555443320  0  1 1234667789999999999999999999


Q ss_pred             ccCCCCCChhhhh
Q psy3184         141 RLGYQRGGIVDIK  153 (185)
Q Consensus       141 R~~~~~~~~~~ll  153 (185)
                      ||++     +++-
T Consensus       791 RPsF-----e~lh  798 (807)
T KOG1094|consen  791 RPSF-----EQLH  798 (807)
T ss_pred             CCCH-----HHHH
Confidence            9955     7654

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=98.56  E-value=6.1e-07  Score=66.42  Aligned_cols=111  Identities=19%  Similarity=0.363  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEcc-CCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITE-GEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~-~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+++.++++||+.     |++|.||+++. +.   .++++|||.+....... ......+...|++   |    |.+..
T Consensus        98 ~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~---~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~---p----e~~~~  167 (215)
T cd00180          98 LLQILEGLEYLHSNGIIHRDLKPENILLDSDNG---KVKLADFGLSKLLTSDKSLLKTIVGTPAYMA---P----EVLLG  167 (215)
T ss_pred             HHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCC---cEEEecCCceEEccCCcchhhcccCCCCccC---h----hHhcc
Confidence            57899999999998     78999999988 32   48999999998664432 2334567888999   9    76643


Q ss_pred             cCcceeccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCC
Q psy3184          84 VGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHK  156 (185)
Q Consensus        84 ~~~~~l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp  156 (185)
                      ..      ..+.  ..+...+-..+.     ..       .++.+++.+|+..+|.+||     ++.++++|+
T Consensus       168 ~~------~~~~--~~D~~~lg~~~~-----~l-------~~~~~~l~~~l~~~p~~R~-----~~~~l~~~~  215 (215)
T cd00180         168 KG------YYSE--KSDIWSLGVILY-----EL-------PELKDLIRKMLQKDPEKRP-----SAKEILEHL  215 (215)
T ss_pred             cC------CCCc--hhhhHHHHHHHH-----HH-------HHHHHHHHHHhhCCcccCc-----CHHHHhhCC
Confidence            20      1111  222222222222     11       8999999999999999999     559988774

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1152|consensus

Probab=98.52  E-value=6.4e-08  Score=82.64  Aligned_cols=74  Identities=16%  Similarity=0.217  Sum_probs=62.5

Q ss_pred             hhhhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccc
Q psy3184           4 DFLKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus         4 ~~~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      ++.+++.-.||+.|+++||+.     |||-+|++++++  |. ++|+|||.+.....+ ....++||..|.|   |    
T Consensus       669 E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~--g~-~klidfgsaa~~ksg-pfd~f~gtv~~aa---p----  737 (772)
T KOG1152|consen  669 EPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSN--GF-VKLIDFGSAAYTKSG-PFDVFVGTVDYAA---P----  737 (772)
T ss_pred             hHHHHHHHHHHHhccccccccCceecccccccEEEecC--Ce-EEEeeccchhhhcCC-Ccceeeeeccccc---h----
Confidence            567888899999999999998     789999999995  43 899999988766543 5668999999999   9    


Q ss_pred             cchhccCcce
Q psy3184          79 NMIINVGIDN   88 (185)
Q Consensus        79 E~~~~~~~~~   88 (185)
                      |++.+.+|-.
T Consensus       738 evl~g~~y~g  747 (772)
T KOG1152|consen  738 EVLGGEKYLG  747 (772)
T ss_pred             hhhCCCccCC
Confidence            9998877654

>KOG1240|consensus

Probab=98.41  E-value=3.4e-07  Score=83.23  Aligned_cols=121  Identities=20%  Similarity=0.314  Sum_probs=79.8

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe--ecC--cccc----cccCCccccccCC
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI--KDG--KILR----LLSGRPPFCVMND   73 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~--~~~--~~~~----~~~gt~~y~a~~~   73 (185)
                      |+..|.|++.||.-||..     |||.+||||++.-  . +.|+||.-.+-.  ..+  ....    +-....-|+|   
T Consensus       122 KkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWN--W-~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiA---  195 (1431)
T KOG1240|consen  122 KKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWN--W-LYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIA---  195 (1431)
T ss_pred             HHHHHHHHHHHHHHHHHcCccccccccceEEEeeec--h-hhhhcccccCCccCCCCCcccceEEEecCCceeeecC---
Confidence            567799999999999998     7899999999942  2 789999877622  111  1111    1122345899   


Q ss_pred             CcccccchhccC-cce-------------------------eccCCCCCC----------CCChHHHHHHHHhcCCCccC
Q psy3184          74 PMQTYNMIINVG-IDN-------------------------IFSRPPFCV----------MNDPMQTYNMIINVGIDKIP  117 (185)
Q Consensus        74 P~~~~E~~~~~~-~~~-------------------------l~g~~Pf~~----------~~~~~~~~~~i~~~~~~~~~  117 (185)
                      |    |.+.... +..                         +.|+++|.-          ..+++..+++|         
T Consensus       196 P----ERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQL~aYr~~~~~~~e~~Le~I---------  262 (1431)
T KOG1240|consen  196 P----ERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQLLAYRSGNADDPEQLLEKI---------  262 (1431)
T ss_pred             h----HhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHHHHhHhccCccCHHHHHHhC---------
Confidence            9    6665421 111                         667788740          01112222222         


Q ss_pred             CCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcC
Q psy3184         118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKH  155 (185)
Q Consensus       118 ~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~h  155 (185)
                          -+...+++|..|+++||.+|+     ++++.|+.
T Consensus       263 ----ed~~~Rnlil~Mi~rdPs~Rl-----SAedyL~~  291 (1431)
T KOG1240|consen  263 ----EDVSLRNLILSMIQRDPSKRL-----SAEDYLQK  291 (1431)
T ss_pred             ----cCccHHHHHHHHHccCchhcc-----CHHHHHHh
Confidence                246889999999999999999     66988865

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=98.33  E-value=5.3e-06  Score=64.82  Aligned_cols=136  Identities=18%  Similarity=0.284  Sum_probs=92.7

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-------ccccccCCccccccCCC
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-------ILRLLSGRPPFCVMNDP   74 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-------~~~~~~gt~~y~a~~~P   74 (185)
                      ......|++.+++|+|+.     |+||+|+++.....  .+++.|||.++......       .....+||..|++   |
T Consensus       103 ~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~--~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~---p  177 (384)
T COG0515         103 ALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGR--VVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMA---P  177 (384)
T ss_pred             HHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCC--eEEEeccCcceecCCCCccccccccccccccccccCC---H
Confidence            344578999999999987     88999999998632  38999999998665432       3467899999999   9


Q ss_pred             cccccchhcc---Ccce--------------eccCCCCCCCCC----hHHHHHHHHhcCCCc-cCCCCCC------CHHH
Q psy3184          75 MQTYNMIINV---GIDN--------------IFSRPPFCVMND----PMQTYNMIINVGIDK-IPFPKHV------TRTA  126 (185)
Q Consensus        75 ~~~~E~~~~~---~~~~--------------l~g~~Pf~~~~~----~~~~~~~i~~~~~~~-~~~p~~~------s~~~  126 (185)
                          |.+...   .+..              +.|..||. ...    .......+.. .... ...+...      ...+
T Consensus       178 ----e~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  251 (384)
T COG0515         178 ----EVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFE-GEKNSSATSQTLKIILE-LPTPSLASPLSPSNPELISKAA  251 (384)
T ss_pred             ----HHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCC-CCCccccHHHHHHHHHh-cCCcccccccCccccchhhHHH
Confidence                766542   2222              78888887 554    3455555541 1111 1111111      2578


Q ss_pred             HHHHHHHhhcCcCcccCCCCCChhhhhcCCCC
Q psy3184         127 QSLIKALCKESPAERLGYQRGGIVDIKKHKWF  158 (185)
Q Consensus       127 ~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f  158 (185)
                      .+++.+++..+|..|.+.     .....+++.
T Consensus       252 ~~~~~~~~~~~~~~r~~~-----~~~~~~~~~  278 (384)
T COG0515         252 SDLLKKLLAKDPKNRLSS-----SSDLSHDLL  278 (384)
T ss_pred             HHHHHHHHhcCchhcCCH-----HHHhhchHh
Confidence            999999999999999955     555544443

>KOG0195|consensus

Probab=98.32  E-value=2.8e-06  Score=67.06  Aligned_cols=118  Identities=16%  Similarity=0.180  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHhhc-------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184          11 TLQVKEMVESMHQA-------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      |..|+.|+.|||+.       -+....++|+.+... ++...|..++-      ......-+|.||+   |    |.+..
T Consensus       295 aldiargmaflhslep~ipr~~lns~hvmidedlta-rismad~kfsf------qe~gr~y~pawms---p----ealqr  360 (448)
T KOG0195|consen  295 ALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTA-RISMADTKFSF------QEVGRAYSPAWMS---P----EALQR  360 (448)
T ss_pred             HHHHHhhHHHHhhcchhhhhhhcccceEEecchhhh-heecccceeee------eccccccCcccCC---H----HHHhc
Confidence            67899999999998       345666677766533 24444433321      0112234789999   9    88876


Q ss_pred             cCcce-----------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          84 VGIDN-----------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        84 ~~~~~-----------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ++-+.                 .+...||. ...++++--+|.-.| -++.+|+.+|.....|++-|+..||.+||.+
T Consensus       361 kped~n~raadmwsfaillwel~trevpfa-dlspmecgmkialeg-lrv~ippgis~hm~klm~icmnedpgkrpkf  436 (448)
T KOG0195|consen  361 KPEDLNIRAADMWSFAILLWELNTREVPFA-DLSPMECGMKIALEG-LRVHIPPGISRHMNKLMNICMNEDPGKRPKF  436 (448)
T ss_pred             CchhcchhhhhHHHHHHHHHHhhccccccc-cCCchhhhhhhhhcc-ccccCCCCccHHHHHHHHHHhcCCCCcCCCc
Confidence            54332                 67789999 777888877766333 6789999999999999999999999999955

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=98.29  E-value=2.7e-06  Score=64.26  Aligned_cols=89  Identities=18%  Similarity=0.284  Sum_probs=66.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccch-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMI-   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~-   81 (185)
                      ...|++.++.+||+.     ++++.|++++.+  + .++++|||.+.......  ......++..|++   |    |++ 
T Consensus       103 ~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~--~-~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~---p----e~~~  172 (225)
T smart00221      103 YLRQILEALEYLHSLGIVHRDLKPENILLGMD--G-LVKLADFGLARFIHRDLAALLKTVKGTPFYLA---P----EVLL  172 (225)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEEcCC--C-CEEEeeCceeeEecCcccccccceeccCCcCC---H----hHhc
Confidence            357899999999998     789999999885  2 49999999988775542  3455678889999   9    776 


Q ss_pred             hccCcce--------------eccCCCCCCC--CChHHHHHHHH
Q psy3184          82 INVGIDN--------------IFSRPPFCVM--NDPMQTYNMII  109 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~--~~~~~~~~~i~  109 (185)
                      ....++.              ++|+.||. +  .+.....+.+.
T Consensus       173 ~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~-~~~~~~~~~~~~~~  215 (225)
T smart00221      173 GGKGYGEAVDIWSLGVILYELLWGPEPFS-GEGEFTSLLSDVWS  215 (225)
T ss_pred             CCCCCCchhhHHHHHHHHHHHHHCCCCcc-ccchhHHHHHHHHh
Confidence            3222222              78999998 5  55557777777

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1290|consensus

Probab=98.29  E-value=6e-07  Score=75.40  Aligned_cols=107  Identities=12%  Similarity=0.177  Sum_probs=69.6

Q ss_pred             eeEEcccCceeEeecCcccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCC--CCCh---
Q psy3184          41 DLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCV--MNDP---  101 (185)
Q Consensus        41 ~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~--~~~~---  101 (185)
                      .+||+|||.+-+...  ..+.-+-|..|.|   |    |++.+.+|+.              .||-..|.-  +.+.   
T Consensus       392 ~vKIaDlGNACW~~k--hFT~DIQTRQYRa---p----EVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~Y~rD  462 (590)
T KOG1290|consen  392 RVKIADLGNACWVHK--HFTEDIQTRQYRA---P----EVLLGSGYSTSADIWSTACMAFELATGDYLFEPHSGENYSRD  462 (590)
T ss_pred             eEEEeeccchhhhhh--hhchhhhhhhccC---c----ceeecCCCCCchhHHHHHHHHHHhhcCceeecCCCCCCCCcc
Confidence            489999998876522  1222355788999   9    9999999887              666555520  2211   


Q ss_pred             -------HHHHHHH----HhcCC----------------------------CccCCCCCCCHHHHHHHHHHhhcCcCccc
Q psy3184         102 -------MQTYNMI----INVGI----------------------------DKIPFPKHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus       102 -------~~~~~~i----~~~~~----------------------------~~~~~p~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                             .+++.++    ..+|.                            ..+.++..-..++.+|+.-||..+|++|+
T Consensus       463 EDHiA~i~ELLG~iPr~ia~~Gk~SRdFFnr~G~LrhI~~LK~WpL~~VL~eKY~~s~e~A~~fsdFL~PmLef~PeKR~  542 (590)
T KOG1290|consen  463 EDHIALIMELLGKIPRKIALGGKYSRDFFNRRGELRHIRRLKPWPLYEVLIEKYEWSEEDAQQFSDFLSPMLEFDPEKRP  542 (590)
T ss_pred             HHHHHHHHHHHhhccHHHHhcCcchHhhhccccceecccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCccccc
Confidence                   1111111    00110                            12234444457888999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCC
Q psy3184         143 GYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~~  161 (185)
                           +|.++++|||+..+
T Consensus       543 -----tA~~cl~hPwLn~~  556 (590)
T KOG1290|consen  543 -----TAAQCLKHPWLNPV  556 (590)
T ss_pred             -----cHHHHhcCccccCC
Confidence                 66999999999765

>KOG1164|consensus

Probab=98.15  E-value=1.1e-05  Score=65.72  Aligned_cols=125  Identities=11%  Similarity=0.149  Sum_probs=79.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCC--CeeEEcccCcee--Eeec-C-c------c-cccccCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAG--NDLFVSAEGEFQ--VIKD-G-K------I-LRLLSGRPPFCVM   71 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~--~~i~l~d~g~~~--~~~~-~-~------~-~~~~~gt~~y~a~   71 (185)
                      .+.|++.+|+++|+.     |+||.|+++......  ..+.+.|||+++  .... . .      . ...+.||..|++ 
T Consensus       127 ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S-  205 (322)
T KOG1164|consen  127 IAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYAS-  205 (322)
T ss_pred             HHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCcccccc-
Confidence            378999999999997     899999999875311  459999999998  3211 1 1      1 223569999999 


Q ss_pred             CCCcccccchhccCcce--------------eccCCCCCCCCChH---HHHHHHHhcCCCccC-CCCCCCHHHHHHHHHH
Q psy3184          72 NDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPM---QTYNMIINVGIDKIP-FPKHVTRTAQSLIKAL  133 (185)
Q Consensus        72 ~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~---~~~~~i~~~~~~~~~-~p~~~s~~~~~li~~~  133 (185)
                        +    .+..+...+.              ..|..||. +....   ..+..... . .... .....+.+...+...+
T Consensus       206 --~----~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~-~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~  276 (322)
T KOG1164|consen  206 --I----NVHLGIEQGRRDDLESLFYMLLELLKGSLPWE-ALEMTDLKSKFEKDPR-K-LLTDRFGDLKPEEFAKILEYI  276 (322)
T ss_pred             --H----HHhCCCccCCchhhhhHHHHHHHHhcCCCCCc-cccccchHHHHHHHhh-h-hccccccCCChHHHHHHHHHh
Confidence              7    6655443332              66779997 44322   22222220 0 0111 2334557777777777


Q ss_pred             hhcCcCcccCC
Q psy3184         134 CKESPAERLGY  144 (185)
Q Consensus       134 l~~dp~~R~~~  144 (185)
                      -..+...+|.+
T Consensus       277 ~~~~~~~~Pdy  287 (322)
T KOG1164|consen  277 DSLDYEDKPDY  287 (322)
T ss_pred             hccCCcCCCCH
Confidence            66788888855

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.13  E-value=2.8e-06  Score=70.33  Aligned_cols=62  Identities=18%  Similarity=0.233  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHhhc-----CC-CCCceEEccCCCCCeeEEcccCceeEeecCc---------ccccccCCccccccCCCc
Q psy3184          11 TLQVKEMVESMHQA-----EY-KADNYVITEGEAGNDLFVSAEGEFQVIKDGK---------ILRLLSGRPPFCVMNDPM   75 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~l-kp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---------~~~~~~gt~~y~a~~~P~   75 (185)
                      ..|++.||.|||++     || ||+||+++.+  + +++|+|||+++.+....         ...+.++++.|+|   | 
T Consensus       117 ~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~--~-~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---p-  189 (365)
T PRK09188        117 FRSAHRALRDLHRAGITHNDLAKPQNWLMGPD--G-EAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYA---P-  189 (365)
T ss_pred             HHHHHHHHHHHHHCCCeeCCCCCcceEEEcCC--C-CEEEEECccceecccCcchhhhhhhhhhhhhhccCccCC---c-
Confidence            56899999999997     89 9999999764  2 49999999998664432         1235678888999   9 


Q ss_pred             ccccchh
Q psy3184          76 QTYNMII   82 (185)
Q Consensus        76 ~~~E~~~   82 (185)
                         |++.
T Consensus       190 ---e~~~  193 (365)
T PRK09188        190 ---DALT  193 (365)
T ss_pred             ---ccCC
Confidence               6654

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=98.11  E-value=2.4e-06  Score=68.42  Aligned_cols=116  Identities=19%  Similarity=0.295  Sum_probs=67.8

Q ss_pred             hhccc-HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCccccc
Q psy3184           6 LKNLD-TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         6 ~~~~~-~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .+++. ..|++..+.++|+.     +|+|+|++++.+  |. ++|.||+.+...+..  ......+..|.+   |    |
T Consensus       145 ~arl~lT~Q~I~lvA~Lh~~GlVHgdi~~~nfll~~~--G~-v~Lg~F~~~~r~g~~--~~~~~~~~~~~P---P----e  212 (288)
T PF14531_consen  145 AARLSLTVQMIRLVANLHSYGLVHGDIKPENFLLDQD--GG-VFLGDFSSLVRAGTR--YRCSEFPVAFTP---P----E  212 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEE-TT--S--EEE--GGGEEETTEE--EEGGGS-TTTS----H----H
T ss_pred             HHHHHHHHHHHHHHHHHhhcceEecccceeeEEEcCC--CC-EEEcChHHHeecCce--eeccCCCcccCC---h----h
Confidence            33444 48999999999998     789999999996  43 999999888655332  221334467888   8    6


Q ss_pred             chhcc--------Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcC
Q psy3184          80 MIINV--------GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKES  137 (185)
Q Consensus        80 ~~~~~--------~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~d  137 (185)
                      +....        .++.              +++..||. ............ . .+     ..+++.++.||.++|..|
T Consensus       213 ~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~-~~~~~~~~~~~f-~-~C-----~~~Pe~v~~LI~~lL~~~  284 (288)
T PF14531_consen  213 LESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFG-LSSPEADPEWDF-S-RC-----RDMPEPVQFLIRGLLQRN  284 (288)
T ss_dssp             HHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STC-CCGGGSTSGGGG-T-TS-----S---HHHHHHHHHHT-SS
T ss_pred             hhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCC-CCCccccccccc-h-hc-----CCcCHHHHHHHHHHccCC
Confidence            55432        1221              88899997 332211110011 0 11     157799999999999999


Q ss_pred             cCcc
Q psy3184         138 PAER  141 (185)
Q Consensus       138 p~~R  141 (185)
                      |.+|
T Consensus       285 ~~~R  288 (288)
T PF14531_consen  285 PEDR  288 (288)
T ss_dssp             GGGS
T ss_pred             cccC
Confidence            9987

>KOG0590|consensus

Probab=98.07  E-value=1.5e-06  Score=76.34  Aligned_cols=140  Identities=18%  Similarity=0.289  Sum_probs=98.8

Q ss_pred             hcccHHHHHHHHHHHh-hc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-C---cccccccC-CccccccCCCc
Q psy3184           7 KNLDTLQVKEMVESMH-QA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-G---KILRLLSG-RPPFCVMNDPM   75 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH-~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~---~~~~~~~g-t~~y~a~~~P~   75 (185)
                      ++.+-.|+..++.|+| ..     ++||+|.+++....  +++++|||++..... .   ......+| ++.|+|   | 
T Consensus       125 ~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~--~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a---~-  198 (601)
T KOG0590|consen  125 ASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGS--ALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGA---P-  198 (601)
T ss_pred             hhhhhhhhccCccccCcccccccCCCCCccchhccCCC--cccCCCchhhccccccCCcceeeecccCCCCCCCC---c-
Confidence            4556678899999999 43     89999999988532  489999999987655 2   23345688 999999   9 


Q ss_pred             ccccchhccCcce---------------eccCCCCCCCCChHHHHHHHHhc-CCCccCCCCCCCHHHHHHHHHHhhcCcC
Q psy3184          76 QTYNMIINVGIDN---------------IFSRPPFCVMNDPMQTYNMIINV-GIDKIPFPKHVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        76 ~~~E~~~~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~~~~~p~~~s~~~~~li~~~l~~dp~  139 (185)
                         |...+..|..               ++|..|+.........+...... +......-..++..+.+++.+++..+|.
T Consensus       199 ---E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~l~~~~~  275 (601)
T KOG0590|consen  199 ---EHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGRFTQLPWNSISDQAHDLLHKILKENPS  275 (601)
T ss_pred             ---ccccchhhcCCCcccccccccccccccCCCCccccccccccceeecccccccccCccccCChhhhhcccccccCCch
Confidence               8776643332               77888876222222222211100 0001233356899999999999999999


Q ss_pred             cccCCCCCChhhhhcCCCCCC
Q psy3184         140 ERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       140 ~R~~~~~~~~~~ll~hp~f~~  160 (185)
                      .|.     +++++..++|+..
T Consensus       276 ~r~-----s~~~~~~d~~~~~  291 (601)
T KOG0590|consen  276 NRL-----SIEELKLDNWLSS  291 (601)
T ss_pred             hcc-----ccccccccccccc
Confidence            999     6699999999977

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=97.99  E-value=6.9e-06  Score=73.25  Aligned_cols=61  Identities=18%  Similarity=0.237  Sum_probs=49.3

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCC
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDP   74 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P   74 (185)
                      +..+.||+.||+|||++     ||||+||+++.+  + .++|+|||+++..... ......++|+.|++   |
T Consensus       107 ~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~--g-~vkL~DFGls~~~~~~~~~~~~~~~t~~~~~---p  173 (669)
T cd05610         107 VKYISEVALALDYLHRHGIIHRDLKPDNMLISNE--G-HIKLTDFGLSKVTLNRELNMMDILTTPSMAK---P  173 (669)
T ss_pred             HHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCC--C-CEEEEeCCCCccccCCcccccccccCccccC---c
Confidence            44578999999999998     899999999875  3 3999999999866433 23445788999999   9

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1033|consensus

Probab=97.81  E-value=5.9e-06  Score=69.96  Aligned_cols=128  Identities=17%  Similarity=0.202  Sum_probs=82.5

Q ss_pred             ccHHHHHHHHHH---HhhcCCCCCceEEccCCCCCeeEEcccCceeEeecCc-------ccccccCCccccccCCCcccc
Q psy3184           9 LDTLQVKEMVES---MHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-------ILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus         9 ~~~~qi~~~l~~---lH~~~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-------~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      ....|++.|++|   +|. ++||.||....+.   .+++.|||+........       ....-+||..||+   |    
T Consensus       363 ~~~~q~~~~~~yk~~ihr-dlkp~nif~~~d~---q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~Yms---P----  431 (516)
T KOG1033|consen  363 DIFKQIAPAVEYKGLIHR-DLKPSNIFFSDDD---QLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMS---P----  431 (516)
T ss_pred             HHHHhhccchhhccchhh-hccccccccccch---hhhhhhhhheeecccCCcccchhhhhhhcccccccCC---H----
Confidence            346788888877   121 7999999988864   38999999987665433       3345689999999   9    


Q ss_pred             cchhccCcce----------ecc-CCCCCCCCChHHHHHHHHhcCCCccCCCCC---CCHHHHHHHHHHhhcCcCcccCC
Q psy3184          79 NMIINVGIDN----------IFS-RPPFCVMNDPMQTYNMIINVGIDKIPFPKH---VTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        79 E~~~~~~~~~----------l~g-~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~---~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      |.+.+..|+.          ++. ..+|.........+..+.     .-.+|+.   =-++...|+.+|+...|.+||. 
T Consensus       432 EQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er~~t~~d~r-----~g~ip~~~~~d~p~e~~ll~~lls~~p~~RP~-  505 (516)
T KOG1033|consen  432 EQIRGQQYSEKVDIYALGLILAELLIQFSTQFERIATLTDIR-----DGIIPPEFLQDYPEEYTLLQQLLSPSPEERPS-  505 (516)
T ss_pred             HHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHHHHhhhhhh-----cCCCChHHhhcCcHHHHHHHHhcCCCcccCch-
Confidence            8888776665          111 223431111222233333     3345521   1356679999999999999993 


Q ss_pred             CCCChhhhhcCCC
Q psy3184         145 QRGGIVDIKKHKW  157 (185)
Q Consensus       145 ~~~~~~~ll~hp~  157 (185)
                          +.+...|.|
T Consensus       506 ----~~~~~~~~~  514 (516)
T KOG1033|consen  506 ----AIEVALHEF  514 (516)
T ss_pred             ----HHHHhhhhh
Confidence                355555554

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=97.59  E-value=0.0001  Score=55.43  Aligned_cols=42  Identities=17%  Similarity=0.152  Sum_probs=35.5

Q ss_pred             cHHHHHHHHHHHhh-c-----CCCCCceEEccCCCCCeeEEcccCceeEeec
Q psy3184          10 DTLQVKEMVESMHQ-A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD   55 (185)
Q Consensus        10 ~~~qi~~~l~~lH~-~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~   55 (185)
                      .+.|++.++.++|+ .     |+||+||+++ +  + .++++|||+++.+..
T Consensus       122 i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~--~-~~~liDFG~a~~~~~  169 (190)
T cd05145         122 LYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-D--G-KPYIIDVSQAVELDH  169 (190)
T ss_pred             HHHHHHHHHHHHHHhCCEecCCCChhhEEEE-C--C-CEEEEEcccceecCC
Confidence            46899999999999 6     8999999998 3  2 389999999987644

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=97.55  E-value=8.6e-05  Score=55.99  Aligned_cols=40  Identities=15%  Similarity=0.274  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHH-hhc-----CCCCCceEEccCCCCCeeEEcccCceeEee
Q psy3184          11 TLQVKEMVESM-HQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK   54 (185)
Q Consensus        11 ~~qi~~~l~~l-H~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~   54 (185)
                      +.|++.+|+++ |+.     |+||+||+++.+    .++|+|||.+....
T Consensus       123 ~~qi~~~L~~l~H~~giiHrDlkP~NIli~~~----~v~LiDFG~a~~~~  168 (190)
T cd05147         123 YLQVIQIMRILYQDCRLVHADLSEYNLLYHDG----KLYIIDVSQSVEHD  168 (190)
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCHHHEEEECC----cEEEEEccccccCC
Confidence            67899999999 675     899999999852    39999999987543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PRK12274 serine/threonine protein kinase; Provisional

Probab=97.47  E-value=0.00016  Score=55.55  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHhhc-----CC-CCCceEEccCCCCCeeEEcccCceeEeec
Q psy3184          11 TLQVKEMVESMHQA-----EY-KADNYVITEGEAGNDLFVSAEGEFQVIKD   55 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~l-kp~Nili~~~~~~~~i~l~d~g~~~~~~~   55 (185)
                      ..|++.+|+++|++     || ||.||+++.+  + .++|+|||.+.....
T Consensus        97 ~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~--g-~i~LIDFG~A~~~~~  144 (218)
T PRK12274         97 FRAARRLLQQLHRCGVAHNDLAKEANWLVQED--G-SPAVIDFQLAVRGNP  144 (218)
T ss_pred             HHHHHHHHHHHHHCcCccCCCCCcceEEEcCC--C-CEEEEECCCceecCC
Confidence            56889999999997     78 7999999864  3 389999999985543

>KOG1023|consensus

Probab=97.18  E-value=0.00099  Score=57.02  Aligned_cols=123  Identities=14%  Similarity=0.175  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccch
Q psy3184          11 TLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        11 ~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ..+|+.|++|+|.-      .++..|.+++..+   .++++|||+.......   .......-..-|.|   |    |++
T Consensus        54 ~rdi~~Gl~ylh~s~i~~hg~l~s~nClvd~~w---~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~a---P----ell  123 (484)
T KOG1023|consen   54 IRDISKGLAYLHNSPIGYHGALKSSNCLVDSRW---VLKLTDFGLNSLLEETAEPEAHHPIRKALLWTA---P----ELL  123 (484)
T ss_pred             HHHHHHHHHHHhcCcceeeeeeccccceeeeeE---EEEechhhhcccccccccccccchhHHHHhccC---H----HHh
Confidence            46788999999986      5789999999864   5999999988766320   00000111234677   8    665


Q ss_pred             hccC--------------cce-------eccCCCCCCC---CChHHHHHHHHhcCCCccCCC-----CCCCHHHHHHHHH
Q psy3184          82 INVG--------------IDN-------IFSRPPFCVM---NDPMQTYNMIINVGIDKIPFP-----KHVTRTAQSLIKA  132 (185)
Q Consensus        82 ~~~~--------------~~~-------l~g~~Pf~~~---~~~~~~~~~i~~~~~~~~~~p-----~~~s~~~~~li~~  132 (185)
                      ....              |+.       ++...||...   .++.++...+. .+...+.-|     ..+.+++..+++.
T Consensus       124 r~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~-~~~~~~~rP~i~~~~e~~~~l~~l~~~  202 (484)
T KOG1023|consen  124 RGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVK-KGGSNPFRPSIELLNELPPELLLLVAR  202 (484)
T ss_pred             cccccccccccccccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHH-hcCCCCcCcchhhhhhcchHHHHHHHH
Confidence            5420              221       6667788631   22345655665 322233333     1456689999999


Q ss_pred             HhhcCcCcccCC
Q psy3184         133 LCKESPAERLGY  144 (185)
Q Consensus       133 ~l~~dp~~R~~~  144 (185)
                      |+..+|.+||+.
T Consensus       203 cw~e~P~~rPs~  214 (484)
T KOG1023|consen  203 CWEEIPEKRPSI  214 (484)
T ss_pred             hcccChhhCccH
Confidence            999999999954

>KOG1166|consensus

Probab=97.14  E-value=0.00065  Score=62.36  Aligned_cols=76  Identities=18%  Similarity=0.210  Sum_probs=58.2

Q ss_pred             hhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCC----CCeeEEcccCceeEe---ecCcccccccCCccccccCC
Q psy3184           6 LKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEA----GNDLFVSAEGEFQVI---KDGKILRLLSGRPPFCVMND   73 (185)
Q Consensus         6 ~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~----~~~i~l~d~g~~~~~---~~~~~~~~~~gt~~y~a~~~   73 (185)
                      |=.+-..|++..|++||..     ||||+|++|.+...    ..-++|+|||.+.-+   ..+.+....++|-.+-+   
T Consensus       795 lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C---  871 (974)
T KOG1166|consen  795 LVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDC---  871 (974)
T ss_pred             hhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCCCcEEeeeeccccchh---
Confidence            3345589999999999998     89999999864211    122899999988533   33556777889999999   


Q ss_pred             CcccccchhccCcce
Q psy3184          74 PMQTYNMIINVGIDN   88 (185)
Q Consensus        74 P~~~~E~~~~~~~~~   88 (185)
                      +    ||..++++++
T Consensus       872 ~----EM~~grpWtY  882 (974)
T KOG1166|consen  872 I----EMREGRPWTY  882 (974)
T ss_pred             H----HHhcCCCCch
Confidence            9    9999887665

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=96.91  E-value=0.0014  Score=51.24  Aligned_cols=40  Identities=10%  Similarity=0.219  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI   53 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~   53 (185)
                      ..||+.+|.+||++     |+||+||+++.+.   .++|+|||.+...
T Consensus       148 ~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~---~v~LIDfg~~~~~  192 (239)
T PRK01723        148 WQAIGQLIARFHDAGVYHADLNAHNILLDPDG---KFWLIDFDRGELR  192 (239)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCchhEEEcCCC---CEEEEECCCcccC
Confidence            56899999999998     8899999998753   3899999988643

>PRK10345 hypothetical protein; Provisional

Probab=96.85  E-value=0.0017  Score=49.85  Aligned_cols=41  Identities=17%  Similarity=0.062  Sum_probs=30.2

Q ss_pred             HHHHHHHH-HHHhhc-----CCCCCceEEccCCC-CCeeEEcc-cCcee
Q psy3184          11 TLQVKEMV-ESMHQA-----EYKADNYVITEGEA-GNDLFVSA-EGEFQ   51 (185)
Q Consensus        11 ~~qi~~~l-~~lH~~-----~lkp~Nili~~~~~-~~~i~l~d-~g~~~   51 (185)
                      ..|++.++ +|||++     ||||+||++++... ...++|+| +|...
T Consensus       110 ~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~  158 (210)
T PRK10345        110 LRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGEST  158 (210)
T ss_pred             HHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCcc
Confidence            35777777 999998     89999999986422 22589999 55443

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=96.74  E-value=0.0027  Score=47.79  Aligned_cols=43  Identities=7%  Similarity=0.099  Sum_probs=35.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD   55 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~   55 (185)
                      .+.+++.++.++|+.     |++|+||+++.+.   .++|+|||.+.....
T Consensus       130 ~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~~~---~~~liDfg~~~~~~~  177 (198)
T cd05144         130 VLDEILEEIVKAYKHGIIHGDLSEFNILVDDDE---KIYIIDWPQMVSTDH  177 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCcCCCCcccEEEcCCC---cEEEEECCccccCCC
Confidence            467899999999997     8899999998742   489999999865433

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>smart00090 RIO RIO-like kinase

Probab=96.72  E-value=0.0018  Score=50.54  Aligned_cols=42  Identities=7%  Similarity=0.108  Sum_probs=34.2

Q ss_pred             cHHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeec
Q psy3184          10 DTLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKD   55 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~   55 (185)
                      .+.||+.++++||+.      |+||+||+++ +  + +++++|||.+...+.
T Consensus       153 i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-~--~-~i~LiDFg~a~~~~~  200 (237)
T smart00090      153 LYDDILEEMRKLYKEGELVHGDLSEYNILVH-D--G-KVVIIDVSQSVELDH  200 (237)
T ss_pred             HHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-C--C-CEEEEEChhhhccCC
Confidence            467999999999987      6799999998 2  2 489999998875543

>KOG0601|consensus

Probab=96.51  E-value=0.0015  Score=56.34  Aligned_cols=129  Identities=15%  Similarity=0.118  Sum_probs=82.7

Q ss_pred             HHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccc------cccCCccccccCCCcccccchhccC
Q psy3184          17 MVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR------LLSGRPPFCVMNDPMQTYNMIINVG   85 (185)
Q Consensus        17 ~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~------~~~gt~~y~a~~~P~~~~E~~~~~~   85 (185)
                      |+.++|+.     +++|.||.+..+..  ..++.|||.+..+..+....      ..-|...|++   |    |+..+..
T Consensus       234 al~~~hs~~~~~~~~kp~~i~~~~~~~--s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~---k----e~~~~l~  304 (524)
T KOG0601|consen  234 ALSHLHSNNIVHDDLKPANIFTTSDWT--SCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAA---K----ELLNGLA  304 (524)
T ss_pred             cccccCCCcccccccchhheecccccc--eeecCCcceeEEccCCccccceeeeecCCCCceEeC---h----hhhcccc
Confidence            89999987     78999999999753  47999999999886653221      2256778999   9    6655321


Q ss_pred             ------cce-------eccCCCCCCC--CChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          86 ------IDN-------IFSRPPFCVM--NDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        86 ------~~~-------l~g~~Pf~~~--~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                            |..       .++..++..+  ..+.+..     .+..+..+=...+.++...+..++..+|..|+     +.+
T Consensus       305 ~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r-----~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~-----~~q  374 (524)
T KOG0601|consen  305 TFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLR-----QGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRL-----TAQ  374 (524)
T ss_pred             chHhhhcchhhhhHhhHhhcccccCCCCCCccccc-----cccCchhhhcCcchhhhhHHHHhcCcchhhhh-----HHH
Confidence                  111       2333222212  2222221     11112223245677888888999999999999     449


Q ss_pred             hhhcCCCCCCCChh
Q psy3184         151 DIKKHKWFQGFDWD  164 (185)
Q Consensus       151 ~ll~hp~f~~~~~~  164 (185)
                      .+++|+++.....-
T Consensus       375 ~~~~l~~i~s~~~~  388 (524)
T KOG0601|consen  375 ILTALNVIHSKLFV  388 (524)
T ss_pred             HHhccccccchhhh
Confidence            99999998755433

>KOG2137|consensus

Probab=96.47  E-value=0.011  Score=52.31  Aligned_cols=147  Identities=13%  Similarity=0.111  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccc----------cccCCccccccCCC
Q psy3184          11 TLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR----------LLSGRPPFCVMNDP   74 (185)
Q Consensus        11 ~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~----------~~~gt~~y~a~~~P   74 (185)
                      ..+++.|+.|+|..      ++.|++|+++..  + ..|+..|+++.....+.+..          ...-...|.|   |
T Consensus       105 l~~v~dgl~flh~sAk~VH~ni~p~~i~~na~--~-~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~a---p  178 (700)
T KOG2137|consen  105 LGNVADGLAFLHRSAKVVHGNIQPEAIVVNAN--G-DWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLA---P  178 (700)
T ss_pred             hhcccchhhhhccCcceeecccchhheeeccC--c-ceeeccchhhhccCCCCccccccCCCCCChhhccCccccc---c
Confidence            44566899999986      678888999885  3 38999999887654432211          1122356888   9


Q ss_pred             cccccchhcc---Ccce--------eccCCCCCCCCChHHHHHHHHh-cCCCccCCCCCCCHHHHHHHHHHhhcCcCccc
Q psy3184          75 MQTYNMIINV---GIDN--------IFSRPPFCVMNDPMQTYNMIIN-VGIDKIPFPKHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        75 ~~~~E~~~~~---~~~~--------l~g~~Pf~~~~~~~~~~~~i~~-~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                      |++.+.....   .++.        -.|+.-+. +.+.-..+..-.+ .+.....+...++.++++=+.+++..+..-||
T Consensus       179 E~~~~~~~~~~sd~fSlG~li~~i~~~gk~i~~-a~~~~~~~~~~~~~~~~~~~~~s~~~p~el~~~l~k~l~~~~~~rp  257 (700)
T KOG2137|consen  179 EYLLGTTNTPASDVFSLGVLIYTIYNGGKSIIA-ANGGLLSYSFSRNLLNAGAFGYSNNLPSELRESLKKLLNGDSAVRP  257 (700)
T ss_pred             hhhccccccccccceeeeeEEEEEecCCcchhh-ccCCcchhhhhhcccccccccccccCcHHHHHHHHHHhcCCcccCc
Confidence            5444433221   1111        23444443 3221111111110 01124455577899999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCChhhhhcc
Q psy3184         143 GYQRGGIVDIKKHKWFQGFDWDGLRNQ  169 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~~~~~~~~~~  169 (185)
                           ++..++..|||.+..-..+..-
T Consensus       258 -----~~~~l~~~~ff~D~~~~aLrfL  279 (700)
T KOG2137|consen  258 -----TLDLLLSIPFFSDPGLKALRFL  279 (700)
T ss_pred             -----chhhhhcccccCCchhhhhhhc
Confidence                 5699999999988765555443

>cd05119 RIO RIO kinase family, catalytic domain

Probab=96.27  E-value=0.0059  Score=45.19  Aligned_cols=43  Identities=14%  Similarity=0.192  Sum_probs=34.8

Q ss_pred             ccHHHHHHHHHHHhh-c-----CCCCCceEEccCCCCCeeEEcccCceeEeec
Q psy3184           9 LDTLQVKEMVESMHQ-A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD   55 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~-~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~   55 (185)
                      ..+.+++.++.++|+ .     |++|+||+++ +  + .++++|||.+.....
T Consensus       118 ~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~--~-~~~liDfg~a~~~~~  166 (187)
T cd05119         118 ELYDQILELMRKLYREAGLVHGDLSEYNILVD-D--G-KVYIIDVPQAVEIDH  166 (187)
T ss_pred             HHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-C--C-cEEEEECcccccccC
Confidence            346789999999999 5     8999999999 3  2 389999999875533

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=96.17  E-value=0.0054  Score=53.44  Aligned_cols=40  Identities=20%  Similarity=0.362  Sum_probs=33.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI   53 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~   53 (185)
                      .+.|++.++.+||+.     |+||+||++..   + .++++|||.++..
T Consensus       433 ~~~~i~~~L~~lH~~giiHrDlkp~NILl~~---~-~~~liDFGla~~~  477 (535)
T PRK09605        433 LVRKVGEIVAKLHKAGIVHGDLTTSNFIVRD---D-RLYLIDFGLGKYS  477 (535)
T ss_pred             HHHHHHHHHHHHHhCCCccCCCChHHEEEEC---C-cEEEEeCcccccC
Confidence            468999999999997     89999999943   2 3899999999764

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=96.09  E-value=0.0094  Score=44.60  Aligned_cols=40  Identities=15%  Similarity=0.278  Sum_probs=33.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI   53 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~   53 (185)
                      ...|++.+|.++|+.     |++|+||+++.   + .+++.|||.+...
T Consensus        95 ~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~~---~-~~~liDfg~a~~~  139 (199)
T TIGR03724        95 LLREIGRLVGKLHKAGIVHGDLTTSNIIVRD---D-KLYLIDFGLGKYS  139 (199)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCcceEEEEC---C-cEEEEECCCCcCC
Confidence            478899999999997     78999999982   2 3899999988653

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK14879 serine/threonine protein kinase; Provisional

Probab=95.91  E-value=0.013  Score=44.27  Aligned_cols=39  Identities=15%  Similarity=0.382  Sum_probs=32.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeE
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQV   52 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~   52 (185)
                      .+.+++.++.++|+.     |++|.||+++.   + .++++|||.+..
T Consensus       100 i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~~---~-~~~liDf~~a~~  143 (211)
T PRK14879        100 LSREIGRLVGKLHSAGIIHGDLTTSNMILSG---G-KIYLIDFGLAEF  143 (211)
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCcccEEEEC---C-CEEEEECCcccC
Confidence            357889999999987     78999999983   2 389999998864

>smart00133 S_TK_X Extension to Ser/Thr-type protein kinases

Probab=95.74  E-value=0.0071  Score=36.91  Aligned_cols=26  Identities=38%  Similarity=0.882  Sum_probs=22.2

Q ss_pred             CCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         159 QGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       159 ~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      ++++|+.+.++++.|||+|.+.+..|
T Consensus         1 ~~idW~~l~~r~~~pP~~P~~~~~~d   26 (64)
T smart00133        1 RGIDWDKLENKEIEPPFVPKIKSPTD   26 (64)
T ss_pred             CCCCHHHHHhCCCCCCcccccCCccH
Confidence            47899999999999999999876543

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=95.51  E-value=0.019  Score=44.78  Aligned_cols=39  Identities=21%  Similarity=0.393  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI   53 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~   53 (185)
                      ..+++.++..+|+.     |++|+|++++.+  +  ++++|||..+..
T Consensus       141 ~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~--g--i~liDfg~~~~~  184 (232)
T PRK10359        141 KAKIKASIESLHQHGMVSGDPHKGNFIVSKN--G--LRIIDLSGKRCT  184 (232)
T ss_pred             HHHHHHHHHHHHHcCCccCCCChHHEEEeCC--C--EEEEECCCcccc
Confidence            45899999999997     899999999874  3  899999988655

>KOG1290|consensus

Probab=94.81  E-value=0.022  Score=48.70  Aligned_cols=27  Identities=19%  Similarity=0.268  Sum_probs=24.2

Q ss_pred             cHHHHHHHHHHHhhc------CCCCCceEEccC
Q psy3184          10 DTLQVKEMVESMHQA------EYKADNYVITEG   36 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~------~lkp~Nili~~~   36 (185)
                      ...||+.||.|||..      ||||+|||+..+
T Consensus       192 I~~qvL~GLdYLH~ecgIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  192 ICRQVLTGLDYLHRECGIIHTDLKPENVLLCST  224 (590)
T ss_pred             HHHHHHHHHHHHHHhcCccccCCCcceeeeecc
Confidence            468999999999987      899999999875

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=94.53  E-value=0.11  Score=44.20  Aligned_cols=123  Identities=14%  Similarity=0.225  Sum_probs=79.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+-.++.+...||..     |+.++|+++..+.   .+.|.|-....+...+.....-+|.+.|.+   |    |.-.-.
T Consensus       122 vaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd~~---~V~LVdsDsfqi~~ng~~~~cpVg~~eftP---P----ElQ~~~  191 (637)
T COG4248         122 VARNLASAFATLHEHGHVVGDVNQNSFLVSDDS---KVVLVDSDSFQINANGTLHLCPVGVSEFTP---P----ELQTLP  191 (637)
T ss_pred             HHHHHHHHHHHHHhcCCcccccCccceeeecCc---eEEEEcccceeeccCCceEecccCccccCC---H----HHhccc
Confidence            477899999999987     7899999998864   377777766666555656667789999999   9    665422


Q ss_pred             Ccce--------------------eccCCCCCCCCC----hHHHHH-HHHhcCC-------------CccCCC-CCCCHH
Q psy3184          85 GIDN--------------------IFSRPPFCVMND----PMQTYN-MIINVGI-------------DKIPFP-KHVTRT  125 (185)
Q Consensus        85 ~~~~--------------------l~g~~Pf~~~~~----~~~~~~-~i~~~~~-------------~~~~~p-~~~s~~  125 (185)
                      .+..                    +-|+.||. |..    ...-++ .|. .|.             .+.++| ..++++
T Consensus       192 sf~g~~r~~~hD~FGLavLiF~lL~ggrHPys-GI~~~~~ap~p~E~~Ia-~g~f~ya~~~~~g~~p~P~~~P~~~Lpp~  269 (637)
T COG4248         192 SFVGFERTANHDNFGLAVLIFHLLFGGRHPYS-GIPLISDAPNPLETDIA-HGRFAYASDQRRGLKPPPRSIPLSMLPPD  269 (637)
T ss_pred             cccccCCCccccchhHHHHHHHHHhcCCCCCC-cccccCCCCCcchhhhh-cceeeechhccCCCCCCCCCCChhhcCHH
Confidence            2211                    56699997 432    111111 222 110             122333 246899


Q ss_pred             HHHHHHHHhhcC--cCcccCC
Q psy3184         126 AQSLIKALCKES--PAERLGY  144 (185)
Q Consensus       126 ~~~li~~~l~~d--p~~R~~~  144 (185)
                      ++.+..+|+...  +.-||+.
T Consensus       270 vqAlF~qaF~~~~~~~~RP~a  290 (637)
T COG4248         270 VQALFQQAFTESGVATPRPTA  290 (637)
T ss_pred             HHHHHHHHhcccCCCCCCCCH
Confidence            999999998753  3468865

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=94.03  E-value=0.084  Score=36.65  Aligned_cols=41  Identities=17%  Similarity=0.131  Sum_probs=33.3

Q ss_pred             cHHHHHHHHHHHhhc--------CCCCCceEEccCCCCCeeEEcccCceeEe
Q psy3184          10 DTLQVKEMVESMHQA--------EYKADNYVITEGEAGNDLFVSAEGEFQVI   53 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~--------~lkp~Nili~~~~~~~~i~l~d~g~~~~~   53 (185)
                      ...+++.++.++|..        |++|+|++++..  + .+++.|||.+...
T Consensus        91 ~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~--~-~~~l~Df~~~~~~  139 (155)
T cd05120          91 IAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDG--K-ILGIIDWEYAGYG  139 (155)
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCcceEEEECC--c-EEEEEecccccCC
Confidence            467889999999983        799999999873  2 4899999988643

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0614|consensus

Probab=93.78  E-value=0.13  Score=44.43  Aligned_cols=57  Identities=56%  Similarity=0.933  Sum_probs=48.5

Q ss_pred             CCchhhhcccHHHHHHHHHHHhhcCCCCCceEEccCCCCCeeEEcccCceeEeecCc
Q psy3184           1 MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK   57 (185)
Q Consensus         1 ~~~~~~~~~~~~qi~~~l~~lH~~~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~   57 (185)
                      ++|+|||+|++.||-+.+..|-...+..+.++|..+..|..+.++..|-...+..+.
T Consensus       157 ~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g~  213 (732)
T KOG0614|consen  157 QKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREGK  213 (732)
T ss_pred             HhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCCe
Confidence            489999999999999999988888888888899887778888999999877665543

>cd05151 ChoK Choline Kinase (ChoK)

Probab=93.72  E-value=0.11  Score=37.45  Aligned_cols=40  Identities=10%  Similarity=0.318  Sum_probs=31.9

Q ss_pred             cHHHHHHHHHHHhhc----------CCCCCceEEccCCCCCeeEEcccCceeEe
Q psy3184          10 DTLQVKEMVESMHQA----------EYKADNYVITEGEAGNDLFVSAEGEFQVI   53 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~----------~lkp~Nili~~~~~~~~i~l~d~g~~~~~   53 (185)
                      ...+++.++..||+.          |++|.||+++.+    .+++.||+.+...
T Consensus        88 ~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~~~----~~~liDf~~a~~~  137 (170)
T cd05151          88 NLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLDDG----RLWLIDWEYAGMN  137 (170)
T ss_pred             HHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEECC----eEEEEecccccCC
Confidence            457899999999975          689999999832    3899999988643

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG1266|consensus

Probab=93.42  E-value=0.08  Score=43.47  Aligned_cols=35  Identities=11%  Similarity=-0.038  Sum_probs=28.0

Q ss_pred             HHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         125 TAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       125 ~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                      --++++.+|+.-.|..||     ++.+++.||..=+++.-
T Consensus       306 lqr~~i~kcl~~eP~~rp-----~ar~llfHpllfeVhsl  340 (458)
T KOG1266|consen  306 LQRGSITKCLEGEPNGRP-----DARLLLFHPLLFEVHSL  340 (458)
T ss_pred             cccCcCcccccCCCCCCc-----chhhhhcCceeeecchH
Confidence            345788999999999999     66999999986555443

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=90.40  E-value=0.44  Score=36.23  Aligned_cols=41  Identities=12%  Similarity=0.194  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHH-hhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec
Q psy3184          11 TLQVKEMVESM-HQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD   55 (185)
Q Consensus        11 ~~qi~~~l~~l-H~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~   55 (185)
                      ..|++.++..| |+.     |+++.||++..+    .+.++|||.+...+.
T Consensus       130 ~~~i~~~l~~l~H~~glVHGDLs~~NIL~~~~----~v~iIDF~qav~~~h  176 (197)
T cd05146         130 YYQVLSMMKQLYKECNLVHADLSEYNMLWHDG----KVWFIDVSQSVEPTH  176 (197)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEEECC----cEEEEECCCceeCCC
Confidence            36888889888 775     889999999753    389999998876543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=89.27  E-value=0.77  Score=34.83  Aligned_cols=45  Identities=7%  Similarity=0.203  Sum_probs=35.2

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI   53 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~   53 (185)
                      -...+++..+.-||.+     |+++.||+++.+.....+.++|++.++..
T Consensus       122 ~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  122 ELLRALARLIAKLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             HHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence            3456788888999998     78999999998753345899999877654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=87.84  E-value=1  Score=38.48  Aligned_cols=35  Identities=9%  Similarity=0.241  Sum_probs=27.5

Q ss_pred             HHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec
Q psy3184          18 VESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD   55 (185)
Q Consensus        18 l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~   55 (185)
                      +..+|..     |++|+||++..+  + .+++.|||.+..++.
T Consensus       270 l~ql~~~g~~H~D~hPgNilv~~~--g-~i~liDfG~~~~l~~  309 (437)
T TIGR01982       270 LNQVLRDGFFHADLHPGNIFVLKD--G-KIIALDFGIVGRLSE  309 (437)
T ss_pred             HHHHHhCCceeCCCCcccEEECCC--C-cEEEEeCCCeeECCH
Confidence            4556665     889999999775  3 399999999987754

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0601|consensus

Probab=86.36  E-value=0.67  Score=40.35  Aligned_cols=41  Identities=17%  Similarity=0.175  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI   53 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~   53 (185)
                      ..|++.++.++|++     |++|.||++.++. + ..++.++|....+
T Consensus       372 ~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~-~-~~~~~~~~~~t~~  417 (524)
T KOG0601|consen  372 TAQILTALNVIHSKLFVHLDVKPSNILISNDG-F-FSKLGDFGCWTRL  417 (524)
T ss_pred             HHHHHhccccccchhhhcccccccceeeccch-h-hhhcccccccccc
Confidence            57899999999987     7999999999853 2 3678888887654

>KOG3087|consensus

Probab=83.37  E-value=2.2  Score=32.51  Aligned_cols=42  Identities=12%  Similarity=0.189  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe
Q psy3184          12 LQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI   53 (185)
Q Consensus        12 ~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~   53 (185)
                      ..|-..|.-||.+     ||...||++.++....++.++|||++...
T Consensus       120 ~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s  166 (229)
T KOG3087|consen  120 RRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVS  166 (229)
T ss_pred             HHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecchhcc
Confidence            3455667889998     67889999998765555689999987643

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=81.45  E-value=2.9  Score=33.26  Aligned_cols=41  Identities=24%  Similarity=0.208  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccC----CCCCeeEEcccCcee
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEG----EAGNDLFVSAEGEFQ   51 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~----~~~~~i~l~d~g~~~   51 (185)
                      ..+++..+.-||+.     |+++.||+++.+    .....+.++|++.+.
T Consensus       144 l~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~  193 (268)
T PRK15123        144 IKRVATMVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQ  193 (268)
T ss_pred             HHHHHHHHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCccc
Confidence            34788889999998     789999999852    112248899998775

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=80.36  E-value=2.9  Score=31.73  Aligned_cols=36  Identities=19%  Similarity=0.385  Sum_probs=28.0

Q ss_pred             HHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe
Q psy3184          14 VKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI   53 (185)
Q Consensus        14 i~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~   53 (185)
                      +=..+.-||..     |+.+.|+++.++    ++.++|||+....
T Consensus       101 vG~~vg~lH~~givHGDLTtsNiIl~~~----~i~~IDfGLg~~s  141 (204)
T COG3642         101 VGRLVGKLHKAGIVHGDLTTSNIILSGG----RIYFIDFGLGEFS  141 (204)
T ss_pred             HHHHHHHHHhcCeecCCCccceEEEeCC----cEEEEECCccccc
Confidence            34456778887     788999999885    3899999998743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		2e-09
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		3e-09
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		3e-09
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		3e-09
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		3e-09
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		3e-09
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		3e-09
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		3e-09
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		3e-09
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		3e-09
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		3e-09
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		3e-09
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		3e-09
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		3e-09
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		3e-09
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		3e-09
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		3e-09
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		3e-09
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		3e-09
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		3e-09
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		3e-09
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		3e-09
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		3e-09
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		3e-09
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		3e-09
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		3e-09
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		3e-09
4ae9_A	343	Structure And Function Of The Human Sperm-specific		3e-09
4ae6_A	343	Structure And Function Of The Human Sperm-specific		3e-09
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		3e-09
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		3e-09
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		3e-09
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		3e-09
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		3e-09
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		3e-09
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		3e-09
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		3e-09
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		3e-09
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		3e-09
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		3e-09
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		3e-09
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		3e-09
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		3e-09
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		3e-09
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		3e-09
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		4e-09
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		4e-09
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		4e-09
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		4e-09
3g51_A	325	Structural Diversity Of The Active Conformation Of		6e-09
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		8e-09
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		8e-09
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		1e-08
3ocp_A	139	Crystal Structure Of Camp Bound Cgmp-Dependent Prot		1e-08
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		1e-08
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		2e-08
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		2e-08
3shr_A	299	Crystal Structure Of Cgmp-Dependent Protein Kinase		3e-08
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		6e-08
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		2e-07
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		2e-07
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		2e-07
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		2e-07
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		2e-07
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		2e-07
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		5e-07
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		5e-07
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		5e-07
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		5e-07
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		8e-07
3qfv_A	415	Mrck Beta In Complex With Tpca-1 Length = 415		9e-07
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		1e-06
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		3e-06
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		3e-06
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		3e-06
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		3e-06
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		4e-06
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		4e-06
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		4e-06
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		5e-06
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		5e-06
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		5e-06
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		6e-06
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		6e-06
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		6e-06
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		7e-06
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		7e-06
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		3e-05
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		5e-05
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		1e-04
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		5e-04

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   ++P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DEPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 237 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 292
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 293 KNHKWFATTDWIAIYQRKVEAPFIP 317

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 237 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 292
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 293 KNHKWFATTDWIAIYQRKVEAPFIP 317

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 237 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 292
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 293 KNHKWFATTDWIAIYQRKVEAPFIP 317

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 237 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 292
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 293 KNHKWFATTDWIAIYQRKVEAPFIP 317

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 231 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 286
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 287 KNHKWFATTDWIAIYQRKVEAPFIP 311

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 223 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 278
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 279 KNHKWFATTDWIAIYQRKVEAPFIP 303

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 237 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 292
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 293 KNHKWFATTDWIAIYQRKVEAPFIP 317

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 229 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 284
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 285 KNHKWFATTDWIAIYQRKVEAPFIP 309

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 229 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 284
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 285 KNHKWFATTDWIAIYQRKVEAPFIP 309

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 237 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 292
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 293 KNHKWFATTDWIAIYQRKVEAPFIP 317

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 257 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 312
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 313 KNHKWFATTDWIAIYQRKVEAPFIP 337

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 237 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 292
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 293 KNHKWFATTDWIAIYQRKVEAPFIP 317

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 237 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 292
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 293 KNHKWFATTDWIAIYQRKVEAPFIP 317

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 257 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 312
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 313 KNHKWFATTDWIAIYQRKVEAPFIP 337

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 237 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 292
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 293 KNHKWFATTDWIAIYQRKVEAPFIP 317

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 237 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 292
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 293 KNHKWFATTDWIAIYQRKVEAPFIP 317

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 237 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 292
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 293 KNHKWFATTDWIAIYQRKVEAPFIP 317

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 257 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 312
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 313 KNHKWFATTDWIAIYQRKVEAPFIP 337

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 222 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDI 277
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 278 KNHKWFATTDWIAIYQRKVEAPFIP 302

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 99  NDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF 158
            D  +T  MI+     K+  P+ ++  AQSL++ L K +PA RLG    G+ +IK+H +F
Sbjct: 229 KDRKETMTMILKA---KLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFF 285
Query: 159 QGFDWDGLRNQTLTPPIIPVA 179
              DW+ L  + + PP  P  
Sbjct: 286 STIDWNKLYRREIHPPFKPAT 306

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 99  NDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF 158
            D  +T  MI+     K+  P+ ++  AQSL++ L K +PA RLG    G+ +IK+H +F
Sbjct: 230 KDRKETMTMILKA---KLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFF 286
Query: 159 QGFDWDGLRNQTLTPPIIP 177
              DW+ L  + + PP  P
Sbjct: 287 STIDWNKLYRREIHPPFKP 305

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 99  NDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF 158
            D  +T  MI+     K+  P+ ++  AQSL++ L K +PA RLG    G+ +IK+H +F
Sbjct: 229 KDRKETMTMILKA---KLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFF 285
Query: 159 QGFDWDGLRNQTLTPPIIP 177
              DW+ L  + + PP  P
Sbjct: 286 STIDWNKLYRREIHPPFKP 304

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ DI
Sbjct: 237 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI 292
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
             HKWF   DW  +  + +  P IP
Sbjct: 293 XNHKWFATTDWIAIYQRKVEAPFIP 317

>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein Kinase(92-227) Length = 139

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 41/56 (73%)
Query: 1  MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDG 56
          +DNDF+KNL+  Q++E+V+ M+  EY  D+ +I EG+ G+ ++V  +G+ +V K+G
Sbjct: 26 LDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG 81

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G    G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLPNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 99  NDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF 158
            D  +T  +I+     K+  P+ ++  AQSL++AL K +PA RLG    G  +IK+H ++
Sbjct: 233 KDRKETMTLILKA---KLGMPQFLSTEAQSLLRALFKRNPANRLGSGPDGAEEIKRHVFY 289
Query: 159 QGFDWDGLRNQTLTPPIIPVAS 180
              DW+ L  + + PP  P  +
Sbjct: 290 STIDWNKLYRREIKPPFKPAVA 311

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
           PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +  G  + G+ DI
Sbjct: 236 PPFFA-DQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKAFGNLKNGVNDI 291
Query: 153 KKHKWFQGFDWDGLRNQTLTPPIIP 177
           K HKWF   DW  +  + +  P IP
Sbjct: 292 KNHKWFATTDWIAIYQRKVEAPFIP 316

>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals Novel Site Of Interchain Communication Length = 299

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 41/56 (73%)
Query: 1  MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDG 56
          +DNDF+KNL+  Q++E+V+ M+  EY  D+ +I EG+ G+ ++V  +G+ +V K+G
Sbjct: 42 LDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG 97

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 116 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 175
           + +PK +++ A S+ K L  + PA+RLG    G  D+++H +F+  DW+ L N+ + PP 
Sbjct: 237 VSYPKSLSKEAVSICKGLMTKHPAKRLGCGPEGERDVREHAFFRRIDWEKLENREIQPPF 296
Query: 176 IP 177
            P
Sbjct: 297 KP 298

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 53  IKDGKILRLLSGRPPFC---VMNDPMQTYNMIIN------VGIDNIFSRPPFCVMNDPMQ 103
           IKDG  ++   G P +    V+ D    Y   ++      V  + +  R PF    D  +
Sbjct: 161 IKDGATMKXFCGTPEYLAPEVLED--NDYGRAVDWWGLGVVMYEMMCGRLPF-YNQDHEK 217
Query: 104 TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
            + +I+   +++I FP+ +   A+SL+  L K+ P +RLG       +I +H++F G  W
Sbjct: 218 LFELIL---MEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 274
Query: 164 DGLRNQTLTPPIIP 177
             +  + L+PP  P
Sbjct: 275 QHVYEKKLSPPFKP 288

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 53  IKDGKILRLLSGRPPFC---VMNDPMQTYNMIIN------VGIDNIFSRPPFCVMNDPMQ 103
           IKDG  ++   G P +    V+ D    Y   ++      V  + +  R PF    D  +
Sbjct: 160 IKDGATMKXFCGTPEYLAPEVLED--NDYGRAVDWWGLGVVMYEMMCGRLPF-YNQDHEK 216
Query: 104 TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
            + +I+   +++I FP+ +   A+SL+  L K+ P +RLG       +I +H++F G  W
Sbjct: 217 LFELIL---MEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 273
Query: 164 DGLRNQTLTPPIIP 177
             +  + L+PP  P
Sbjct: 274 QHVYEKKLSPPFKP 287

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 53  IKDGKILRLLSGRPPFC---VMNDPMQTYNMIIN------VGIDNIFSRPPFCVMNDPMQ 103
           IKDG  ++   G P +    V+ D    Y   ++      V  + +  R PF    D  +
Sbjct: 162 IKDGATMKXFCGTPEYLAPEVLED--NDYGRAVDWWGLGVVMYEMMCGRLPF-YNQDHEK 218
Query: 104 TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
            + +I+   +++I FP+ +   A+SL+  L K+ P +RLG       +I +H++F G  W
Sbjct: 219 LFELIL---MEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 275
Query: 164 DGLRNQTLTPPIIP 177
             +  + L+PP  P
Sbjct: 276 QHVYEKKLSPPFKP 289

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 53  IKDGKILRLLSGRPPFC---VMNDPMQTYNMIIN------VGIDNIFSRPPFCVMNDPMQ 103
           IKDG  ++   G P +    V+ D    Y   ++      V  + +  R PF    D  +
Sbjct: 303 IKDGATMKTFCGTPEYLAPEVLED--NDYGRAVDWWGLGVVMYEMMCGRLPF-YNQDHEK 359
Query: 104 TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
            + +I+   +++I FP+ +   A+SL+  L K+ P +RLG       +I +H++F G  W
Sbjct: 360 LFELIL---MEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 416
Query: 164 DGLRNQTLTPPIIP 177
             +  + L+PP  P
Sbjct: 417 QHVYEKKLSPPFKP 430

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 116 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 175
           + +PK +++ A ++ K L  + P +RLG    G  DIK+H +F+  DW+ L  + + PP 
Sbjct: 559 VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPY 618
Query: 176 IPVAS 180
            P AS
Sbjct: 619 KPKAS 623

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 53  IKDGKILRLLSGRPPFC---VMNDPMQTYNMIIN------VGIDNIFSRPPFCVMNDPMQ 103
           IKDG  ++   G P +    V+ D    Y   ++      V  + +  R PF    D  +
Sbjct: 300 IKDGATMKTFCGTPEYLAPEVLED--NDYGRAVDWWGLGVVMYEMMCGRLPF-YNQDHEK 356
Query: 104 TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
            + +I+   +++I FP+ +   A+SL+  L K+ P +RLG       +I +H++F G  W
Sbjct: 357 LFELIL---MEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVW 413
Query: 164 DGLRNQTLTPPIIP 177
             +  + L+PP  P
Sbjct: 414 QHVYEKKLSPPFKP 427

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 92  RPPFCVM----NDPMQTYNMIINVGIDK-IPFPKHVTRTAQSLIKALCKESPAERLG-YQ 145
           R PF ++    N    T + +  V ++K I  P+ ++  A S++K+   + P ERLG + 
Sbjct: 203 RSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHP 262
Query: 146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS 180
           + G  DI+ H +F+  DWD +  + + PP  P  S
Sbjct: 263 QTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNIS 297

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 92  RPPFCVM----NDPMQTYNMIINVGIDK-IPFPKHVTRTAQSLIKALCKESPAERLG-YQ 145
           R PF ++    N    T + +  V ++K I  P+ ++  A S++K+   + P ERLG + 
Sbjct: 250 RSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHP 309
Query: 146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           + G  DI+ H +F+  DWD +  + + PP  P
Sbjct: 310 QTGFADIQGHPFFRNVDWDMMEQKQVVPPFKP 341

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 91  SRPPFCVM----NDPMQTYNMIINVGIDK-IPFPKHVTRTAQSLIKALCKESPAERLG-Y 144
            R PF ++    N    T + +  V ++K I  P+ ++  A S++K+   + P ERLG +
Sbjct: 206 GRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCH 265
Query: 145 QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS 180
            + G  DI+ H +F+  DWD +  + + PP  P  S
Sbjct: 266 PQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNIS 301

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 116 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 175
           + +PK +++ A ++ K L  + P +RLG    G  DIK+H +F+  DW+ L  + + PP 
Sbjct: 238 VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPY 297
Query: 176 IPVA 179
            P A
Sbjct: 298 KPKA 301

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 12/96 (12%)
Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVT---RTAQSLIKAL-CKESPAERLGY 144
           ++   PF      ++TY  I+N   ++  FP HVT     A+ LI+ L C  S   RLG 
Sbjct: 291 LYGETPF-YAESLVETYGKIMN-HEERFQFPSHVTDVSEEAKDLIQRLIC--SRERRLG- 345
Query: 145 QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS 180
            + GI D KKH +F+G +W+ +RN  L  P IP  S
Sbjct: 346 -QNGIEDFKKHAFFEGLNWENIRN--LEAPYIPDVS 378

>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 12/96 (12%)
Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVT---RTAQSLIKAL-CKESPAERLGY 144
           ++   PF      ++TY  I+N   ++  FP HVT     A+ LI+ L C  S   RLG 
Sbjct: 275 LYGETPF-YAESLVETYGKIMN-HEERFQFPSHVTDVSEEAKDLIQRLIC--SRERRLG- 329
Query: 145 QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS 180
            + GI D KKH +F+G +W+ +RN  L  P IP  S
Sbjct: 330 -QNGIEDFKKHAFFEGLNWENIRN--LEAPYIPDVS 362

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 92  RPPFCVM----NDPMQTYNMIINVGIDK-IPFPKHVTRTAQSLIKALCKESPAERLG-YQ 145
           R PF ++    N    T + +  V ++K I  P+ ++  A S++K+   + P ERLG   
Sbjct: 218 RSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSMSVKAASVLKSFLNKDPKERLGCLP 277
Query: 146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           + G  DI+ H +F+  DWD +  + + PP  P
Sbjct: 278 QTGFADIQGHPFFRNVDWDMMEQKQVVPPFKP 309

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           I +R PF    + ++   +   V    + +P   +  ++   +AL ++ P +RLG++ G 
Sbjct: 383 IAARGPFRARGEKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGS 442
Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
              ++ H  F+   W  L    LTPP +P
Sbjct: 443 CDGLRTHPLFRDISWRQLEAGMLTPPFVP 471

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           I +R PF    + ++   +   V    + +P   +  ++   +AL ++ P +RLG++ G 
Sbjct: 383 IAARGPFRARGEKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGS 442
Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
              ++ H  F+   W  L    LTPP +P
Sbjct: 443 CDGLRTHPLFRDISWRQLEAGMLTPPFVP 471

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           I +R PF    + ++   +   V    + +P   +  ++   +AL ++ P +RLG++ G 
Sbjct: 383 IAARGPFRARGEKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGS 442
Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
              ++ H  F+   W  L    LTPP +P
Sbjct: 443 CDGLRTHPLFRDISWRQLEAGMLTPPFVP 471

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           I +R PF    + ++   +   V    + +P   +  ++   +AL ++ P +RLG++ G 
Sbjct: 383 IAARGPFRARGEKVENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGS 442
Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
              ++ H  F+   W  L    LTPP +P
Sbjct: 443 CDGLRTHPLFRDISWRQLEAGMLTPPFVP 471

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           ++  PPF   N   + Y+ I+N  +   P   ++T +A+ L++ L ++   +RLG  +  
Sbjct: 233 LYGLPPFYSRNT-AEMYDNILNKPLQLKP---NITNSARHLLEGLLQKDRTKRLG-AKDD 287
Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS 180
            ++IK H +F   +WD L N+ +TPP  P  S
Sbjct: 288 FMEIKSHVFFSLINWDDLINKKITPPFNPNVS 319

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 87  DNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR 146
           D +   PPF   N   +T + I+     K+  P ++T+ A+ L+K L K + A RLG   
Sbjct: 213 DMLTGAPPFTGENRK-KTIDKILKC---KLNLPPYLTQEARDLLKKLLKRNAASRLGAGP 268
Query: 147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPV 178
           G   +++ H +F+  +W+ L  + + PP  P+
Sbjct: 269 GDAGEVQAHPFFRHINWEELLARKVEPPFKPL 300

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 87  DNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR 146
           D +   PPF   N   +T + I+     K+  P ++T+ A+ L+K L K + A RLG   
Sbjct: 213 DMLTGAPPFTGENRK-KTIDKILKC---KLNLPPYLTQEARDLLKKLLKRNAASRLGAGP 268
Query: 147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPV 178
           G   +++ H +F+  +W+ L  + + PP  P+
Sbjct: 269 GDAGEVQAHPFFRHINWEELLARKVEPPFKPL 300

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVT---RTAQSLIKAL-CKESPAERLGY 144
           ++   PF      ++TY  I+N   ++  FP  VT     A+ LI+ L C  S   RLG 
Sbjct: 275 LYGETPF-YAESLVETYGKIMNHK-ERFQFPTQVTDVSENAKDLIRRLIC--SREHRLG- 329
Query: 145 QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS 180
            + GI D KKH +F G DWD +RN     P IP  S
Sbjct: 330 -QNGIEDFKKHPFFSGIDWDNIRN--CEAPYIPEVS 362

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 53  IKDGKILRLLSGRPPFC---VMNDPMQTYNMIIN------VGIDNIFSRPPFCVMNDPMQ 103
           I DG  ++   G P +    V+ D    Y   ++      V  + +  R PF    D  +
Sbjct: 161 ISDGATMKXFCGTPEYLAPEVLED--NDYGRAVDWWGLGVVMYEMMCGRLPF-YNQDHER 217
Query: 104 TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
            + +I+   +++I FP+ ++  A+SL+  L K+ P +RLG       ++ +H++F   +W
Sbjct: 218 LFELIL---MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 274
Query: 164 DGLRNQTLTPPIIP 177
             +  + L PP  P
Sbjct: 275 QDVVQKKLLPPFKP 288

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 53  IKDGKILRLLSGRPPFC---VMNDPMQTYNMIIN------VGIDNIFSRPPFCVMNDPMQ 103
           I DG  ++   G P +    V+ D    Y   ++      V  + +  R PF    D  +
Sbjct: 156 ISDGATMKXFCGTPEYLAPEVLED--NDYGRAVDWWGLGVVMYEMMCGRLPF-YNQDHER 212
Query: 104 TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
            + +I+   +++I FP+ ++  A+SL+  L K+ P +RLG       ++ +H++F   +W
Sbjct: 213 LFELIL---MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269
Query: 164 DGLRNQTLTPPIIP 177
             +  + L PP  P
Sbjct: 270 QDVVQKKLLPPFKP 283

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 53  IKDGKILRLLSGRPPFC---VMNDPMQTYNMIIN------VGIDNIFSRPPFCVMNDPMQ 103
           I DG  ++   G P +    V+ D    Y   ++      V  + +  R PF    D  +
Sbjct: 156 ISDGATMKXFCGTPEYLAPEVLED--NDYGRAVDWWGLGVVMYEMMCGRLPF-YNQDHER 212
Query: 104 TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
            + +I+   +++I FP+ ++  A+SL+  L K+ P +RLG       ++ +H++F   +W
Sbjct: 213 LFELIL---MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269
Query: 164 DGLRNQTLTPPIIP 177
             +  + L PP  P
Sbjct: 270 QDVVQKKLLPPFKP 283

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 53  IKDGKILRLLSGRPPFC---VMNDPMQTYNMIIN------VGIDNIFSRPPFCVMNDPMQ 103
           I DG  ++   G P +    V+ D    Y   ++      V  + +  R PF    D  +
Sbjct: 156 ISDGATMKXFCGTPEYLAPEVLED--NDYGRAVDWWGLGVVMYEMMCGRLPF-YNQDHER 212
Query: 104 TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
            + +I+   +++I FP+ ++  A+SL+  L K+ P +RLG       ++ +H++F   +W
Sbjct: 213 LFELIL---MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269
Query: 164 DGLRNQTLTPPIIP 177
             +  + L PP  P
Sbjct: 270 QDVVQKKLLPPFKP 283

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 53  IKDGKILRLLSGRPPFC---VMNDPMQTYNMIIN------VGIDNIFSRPPFCVMNDPMQ 103
           I DG  ++   G P +    V+ D    Y   ++      V  + +  R PF    D  +
Sbjct: 159 ISDGATMKTFCGTPEYLAPEVLED--NDYGRAVDWWGLGVVMYEMMCGRLPF-YNQDHER 215
Query: 104 TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
            + +I+   +++I FP+ ++  A+SL+  L K+ P +RLG       ++ +H++F   +W
Sbjct: 216 LFELIL---MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 272
Query: 164 DGLRNQTLTPPIIP 177
             +  + L PP  P
Sbjct: 273 QDVVQKKLLPPFKP 286

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 53  IKDGKILRLLSGRPPFC---VMNDPMQTYNMIIN------VGIDNIFSRPPFCVMNDPMQ 103
           I DG  ++   G P +    V+ D    Y   ++      V  + +  R PF    D  +
Sbjct: 156 ISDGATMKTFCGTPEYLAPEVLED--NDYGRAVDWWGLGVVMYEMMCGRLPF-YNQDHER 212
Query: 104 TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
            + +I+   +++I FP+ ++  A+SL+  L K+ P +RLG       ++ +H++F   +W
Sbjct: 213 LFELIL---MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269
Query: 164 DGLRNQTLTPPIIP 177
             +  + L PP  P
Sbjct: 270 QDVVQKKLLPPFKP 283

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 53  IKDGKILRLLSGRPPFC---VMNDPMQTYNMIIN------VGIDNIFSRPPFCVMNDPMQ 103
           I DG  ++   G P +    V+ D    Y   ++      V  + +  R PF    D  +
Sbjct: 156 ISDGATMKTFCGTPEYLAPEVLED--NDYGRAVDWWGLGVVMYEMMCGRLPF-YNQDHER 212
Query: 104 TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
            + +I+   +++I FP+ ++  A+SL+  L K+ P +RLG       ++ +H++F   +W
Sbjct: 213 LFELIL---MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINW 269
Query: 164 DGLRNQTLTPPIIP 177
             +  + L PP  P
Sbjct: 270 QDVVQKKLLPPFKP 283

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 117 PFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPII 176
           P+P+ ++  A+ LI+ L  + P +RLG       +IK+H +FQ  +WD L  + +  P  
Sbjct: 284 PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFK 343
Query: 177 PVASILRDE 185
           PV   +RDE
Sbjct: 344 PV---IRDE 349

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 99  NDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF 158
           ++ M+TY  I+N    ++ FP       + L+  L     ++RLG  + G  D+K H WF
Sbjct: 206 SNTMKTYEKILNA---ELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWF 262
Query: 159 QGFDWDGLRNQTLTPPIIP 177
           +   W+ L ++ +  P  P
Sbjct: 263 KEVVWEKLLSRNIETPYEP 281

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP---KHVTRTAQSLI-KALCKESPAERLGY 144
            + + PF   +   +TY  I++   + +  P   + V   A+  I + LC   P  RLG 
Sbjct: 264 FYGQTPF-YADSTAETYGKIVHYK-EHLSLPLVDEGVPEEARDFIQRLLC--PPETRLG- 318
Query: 145 QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
            RGG  D + H +F G DWDGLR+    PP  P
Sbjct: 319 -RGGAGDFRTHPFFFGLDWDGLRDS--VPPFTP 348

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 105 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG-YQRGGIVDIKKHKWFQGFDW 163
           +  I+N   D++ +P  +   A  ++K+   ++P  RLG   +GG   I +H +F+  DW
Sbjct: 233 FEAILN---DEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEIDW 289
Query: 164 DGLRNQTLTPPIIP 177
             L ++ + PP  P
Sbjct: 290 AQLNHRQIEPPFRP 303

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-29
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	1e-25
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	2e-21
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	7e-21
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	1e-20
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	3e-20
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	5e-20
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	3e-19
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	3e-19
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	6e-19
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	1e-18
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	2e-18
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	3e-18
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	4e-18
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	4e-18
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	5e-18
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	5e-18
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	7e-18
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	1e-17
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	5e-17
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	6e-17
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	1e-16
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	1e-14
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	2e-14
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	5e-13
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	1e-07
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	7e-13
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	7e-13
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	2e-06
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	2e-10
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	6e-06
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	4e-10
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	1e-09
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	2e-09
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	9e-06
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	3e-09
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	4e-09
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	5e-06
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	4e-07
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	5e-07
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	7e-07
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	1e-06
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-06
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	2e-06
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	4e-06
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	5e-06
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	6e-06
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	1e-04
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	9e-06
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	1e-05
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	2e-05
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	2e-05
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	4e-05
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-04
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	1e-04
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-04
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	3e-04
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	4e-04
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	5e-04
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	5e-04
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	6e-04
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	6e-04
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	8e-04
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	8e-04
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	8e-04
1ft9_A	222	Carbon monoxide oxidation system transcription reg	9e-04

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score =  109 bits (275), Expect = 2e-29
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
            PPF   + P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G+ D
Sbjct: 235 YPPFF-ADQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVND 290

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
           IK HKWF   DW  +  + +  P IP
Sbjct: 291 IKNHKWFATTDWIAIYQRKVEAPFIP 316

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 99.5 bits (249), Expect = 1e-25
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
             PF   ++ M+TY  I+N    ++ FP       + L+  L     ++RLG  + G  D
Sbjct: 200 YTPFYD-SNTMKTYEKILN---AELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTED 255

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
           +K H WF+   W+ L ++ +  P  P
Sbjct: 256 VKNHPWFKEVVWEKLLSRNIETPYEP 281

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 88.5 bits (220), Expect = 2e-21
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 92  RPPFCVM---NDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
             PF V    N   +    I+     + P+P+ ++  A+ LI+ L  + P +RLG     
Sbjct: 259 ASPFTVDGEKNSQAEISRRILK---SEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRD 315

Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
             +IK+H +FQ  +WD L  + +  P  P
Sbjct: 316 ADEIKEHLFFQKINWDDLAAKKVPAPFKP 344

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 86.5 bits (215), Expect = 7e-21
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY-QRGGIV 150
            PPF    +    +  II     +  FP+     A+ L++ L      +RLG  +  G  
Sbjct: 229 LPPFR-AGNEYLIFQKIIK---LEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYG 284

Query: 151 DIKKHKWFQGFDWDGLRNQTLTPPIIP 177
            +K H +F+   W+ L  Q  TPP + 
Sbjct: 285 PLKAHPFFESVTWENLHQQ--TPPKLT 309

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 85.7 bits (213), Expect = 1e-20
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
            PPF    +  +T + I+     K+  P ++T+ A+ L+K L K + A RLG   G   +
Sbjct: 218 APPFTG-ENRKKTIDKILK---CKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGE 273

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
           ++ H +F+  +W+ L  + + PP  P
Sbjct: 274 VQAHPFFRHINWEELLARKVEPPFKP 299

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 84.9 bits (211), Expect = 3e-20
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
             PF    D  +T  MI+     K+  P+ ++  AQSL++ L K +PA RLG    G+ +
Sbjct: 223 TLPFQG-KDRKETMTMILK---AKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEE 278

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
           IK+H +F   DW+ L  + + PP  P
Sbjct: 279 IKRHSFFSTIDWNKLYRREIHPPFKP 304

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 85.1 bits (211), Expect = 5e-20
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKH--VTRTAQSLIKALCKESPAERLGYQR 146
           +    PF   +  + TY+ I+N   + + FP    +++ A++LI A   +    RLG  R
Sbjct: 267 LVGDTPFYA-DSLVGTYSKIMN-HKNSLTFPDDNDISKEAKNLICAFLTD-REVRLG--R 321

Query: 147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
            G+ +IK+H +F+   W     +    P++P
Sbjct: 322 NGVEEIKRHLFFKNDQWAWETLRDTVAPVVP 352

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 82.7 bits (205), Expect = 3e-19
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 5/86 (5%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
            PPF    +  + Y+ I+N     +    ++T +A+ L++ L ++   +RLG +    ++
Sbjct: 236 LPPFYS-RNTAEMYDNILN---KPLQLKPNITNSARHLLEGLLQKDRTKRLGAK-DDFME 290

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
           IK H +F   +WD L N+ +TPP  P
Sbjct: 291 IKSHVFFSLINWDDLINKKITPPFNP 316

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 83.4 bits (206), Expect = 3e-19
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 92  RPPFCVMN--DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI 149
             PF      D  +   M +      +  P   +   +SL++ L +     RLG    G 
Sbjct: 388 HSPFRQHKTKDKHEIDRMTLT---MAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGA 444

Query: 150 VDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
            ++K+  +F+  DW  +  Q   PP+IP
Sbjct: 445 QEVKESPFFRSLDWQMVFLQKYPPPLIP 472

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 82.4 bits (203), Expect = 6e-19
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           + PF    D  + +  I+      + +PK +++ A ++ K L  + P +RLG    G  D
Sbjct: 539 QAPFE-GEDEDELFQSIME---HNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERD 594

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIPVAS 180
           IK+H +F+  DW+ L  + + PP  P AS
Sbjct: 595 IKEHAFFRYIDWEKLERKEIQPPYKPKAS 623

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 81.1 bits (201), Expect = 1e-18
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           + PF    D  + +  I+      + +PK +++ A ++ K L  + P +RLG    G  D
Sbjct: 218 QAPFE-GEDEDELFQSIME---HNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERD 273

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
           IK+H +F+  DW+ L  + + PP  P
Sbjct: 274 IKEHAFFRYIDWEKLERKEIQPPYKP 299

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 80.0 bits (198), Expect = 2e-18
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 23/117 (19%)

Query: 62  LSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKH 121
           ++GR PF ++                           N     + +I+     +I  P+ 
Sbjct: 204 MAGRSPFDIVGSSDNPDQ-------------------NTEDYLFQVILE---KQIRIPRS 241

Query: 122 VTRTAQSLIKALCKESPAERLGY-QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           ++  A S++K+   + P ERLG   + G  DI+ H +F+  DWD +  + + PP  P
Sbjct: 242 LSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKP 298

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 80.1 bits (198), Expect = 3e-18
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 89  IFSRPPF--CVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR 146
           +  R P+         +  +         + +P   ++   SL+K L + +P +R     
Sbjct: 211 LRGRRPYHIRSSTSSKEIVHTFET---TVVTYPSAWSQEMVSLLKKLLEPNPDQRFS--- 264

Query: 147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
             + D++   +    +WD +  + L P  IP
Sbjct: 265 -QLSDVQNFPYMNDINWDAVFQKRLIPGFIP 294

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 79.2 bits (196), Expect = 4e-18
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           R PF    D  + + +I+    ++I FP+ ++  A+SL+  L K+ P +RLG       +
Sbjct: 202 RLPFYN-QDHERLFELILM---EEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKE 257

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
           + +H++F   +W  +  + L PP  P
Sbjct: 258 VMEHRFFLSINWQDVVQKKLLPPFKP 283

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 79.8 bits (197), Expect = 4e-18
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP---KHVTRTAQSLIKALCKESPAERLGYQ 145
            + + PF   +   +TY  I++   + +  P   + V   A+  I+ L    P  RLG  
Sbjct: 264 FYGQTPFYA-DSTAETYGKIVH-YKEHLSLPLVDEGVPEEARDFIQRLLCP-PETRLG-- 318

Query: 146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           RGG  D + H +F G DWDGLR+    PP  P
Sbjct: 319 RGGAGDFRTHPFFFGLDWDGLRDS--VPPFTP 348

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 79.8 bits (197), Expect = 5e-18
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           R PF    D  + + +I+    ++I FP+ +   A+SL+  L K+ P +RLG       +
Sbjct: 346 RLPF-YNQDHEKLFELILM---EEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKE 401

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
           I +H++F G  W  +  + L+PP  P
Sbjct: 402 IMQHRFFAGIVWQHVYEKKLSPPFKP 427

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 79.3 bits (196), Expect = 5e-18
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 23/117 (19%)

Query: 62  LSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKH 121
           ++GR PF ++                           N     + +I+     +I  P+ 
Sbjct: 247 MAGRSPFDIVGSSDNPDQ-------------------NTEDYLFQVILE---KQIRIPRS 284

Query: 122 VTRTAQSLIKALCKESPAERLGY-QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           ++  A S++K+   + P ERLG   + G  DI+ H +F+  DWD +  + + PP  P
Sbjct: 285 LSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKP 341

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 78.8 bits (195), Expect = 7e-18
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 5/87 (5%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY-QRGGIV 150
             PF    +    +  I+N   D++ +P  +   A  ++K+   ++P  RLG   +GG  
Sbjct: 221 HAPFEA-ENEDDLFEAILN---DEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEH 276

Query: 151 DIKKHKWFQGFDWDGLRNQTLTPPIIP 177
            I +H +F+  DW  L ++ + PP  P
Sbjct: 277 AILRHPFFKEIDWAQLNHRQIEPPFRP 303

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKH---VTRTAQSLIKALCKESPAERLGYQ 145
           ++   PF      ++TY  I+N   ++  FP     V+  A+ LI+ L   S   RLG  
Sbjct: 275 LYGETPFYA-ESLVETYGKIMN-HKERFQFPTQVTDVSENAKDLIRRLIC-SREHRLG-- 329

Query: 146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           + GI D KKH +F G DWD +RN     P IP
Sbjct: 330 QNGIEDFKKHPFFSGIDWDNIRN--CEAPYIP 359

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 76.5 bits (189), Expect = 5e-17
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           + PF    D  + ++ I     D   +P+ + + A+ L+  L    P +RLG +     D
Sbjct: 215 QSPFHG-QDEEELFHSIRM---DNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRG----D 266

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
           I++H  F+  +W+ L  + + PP  P
Sbjct: 267 IRQHPLFREINWEELERKEIDPPFRP 292

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 76.7 bits (189), Expect = 6e-17
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 92  RPPFCVMNDPMQT---YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           R PF    + ++       ++      + +P   +  ++   +AL ++ P +RLG++ G 
Sbjct: 386 RGPFRARGEKVENKELKQRVLE---QAVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGS 442

Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
              ++ H  F+   W  L    LTPP +P
Sbjct: 443 CDGLRTHPLFRDISWRQLEAGMLTPPFVP 471

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 76.0 bits (187), Expect = 1e-16
 Identities = 22/86 (25%), Positives = 38/86 (44%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           + PF      ++   +   V      + +  +  A+SL   L  + PAERLG + G   +
Sbjct: 382 QSPFQQRKKKIKREEVERLVKEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSARE 441

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
           +K+H  F+  ++  L    L PP  P
Sbjct: 442 VKEHPLFKKLNFKRLGAGMLEPPFKP 467

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139

 Score = 66.6 bits (163), Expect = 1e-14
 Identities = 24/63 (38%), Positives = 43/63 (68%)

Query: 1  MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR 60
          +DNDF+KNL+  Q++E+V+ M+  EY  D+ +I EG+ G+ ++V  +G+ +V K+G  L 
Sbjct: 26 LDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLC 85

Query: 61 LLS 63
           + 
Sbjct: 86 TMG 88

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 1   MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR 60
             N    +LD  +  ++ ++M    + A   VI +G+ G++ +V  +GE  V  + +   
Sbjct: 41  EKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWAT 100

Query: 61  LLS 63
            + 
Sbjct: 101 SVG 103

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 64.1 bits (156), Expect = 5e-13
 Identities = 9/68 (13%), Positives = 24/68 (35%)

Query: 1  MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR 60
           +N     LD+   + ++  + +        +I +G+ G+  +V  +G      +   + 
Sbjct: 10 RNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVN 69

Query: 61 LLSGRPPF 68
                 F
Sbjct: 70 SSGPGSSF 77

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 1   MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
                LK+L T    ++ +++    Y+    +I EG+ G + ++   G   V K G+
Sbjct: 128 KSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQ 184

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161

 Score = 62.4 bits (152), Expect = 7e-13
 Identities = 15/57 (26%), Positives = 29/57 (50%)

Query: 1  MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
           D    KNLD  Q+ +++++M +   K   +VI +G+ G++ +V   G F +     
Sbjct: 41 KDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCD 97

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 64.2 bits (156), Expect = 7e-13
 Identities = 24/63 (38%), Positives = 43/63 (68%)

Query: 1   MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR 60
           +DNDF+KNL+  Q++E+V+ M+  EY  D+ +I EG+ G+ ++V  +G+ +V K+G  L 
Sbjct: 42  LDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLC 101

Query: 61  LLS 63
            + 
Sbjct: 102 TMG 104

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 9/55 (16%), Positives = 27/55 (49%)

Query: 3   NDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
               ++L    + ++ + + +  Y+   Y+I +G  G+  F+ ++G+  V ++  
Sbjct: 162 VPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDS 216

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 14/68 (20%), Positives = 30/68 (44%)

Query: 1   MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR 60
             N    +LD  +  ++ ++M    + A   VI +G+ G++ +V  +GE  V  + +   
Sbjct: 42  EKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWAT 101

Query: 61  LLSGRPPF 68
            +     F
Sbjct: 102 SVGEGGSF 109

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 10/57 (17%), Positives = 28/57 (49%)

Query: 1   MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
                L++LD  +   + +++   +++    ++ +GE G++ F+  EG   V++   
Sbjct: 160 SKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRS 216

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 56.7 bits (137), Expect = 4e-10
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 16/108 (14%)

Query: 61  LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
           +     PF +    ++ +N I           P          T                
Sbjct: 245 MFYNVVPFSLKISLVELFNNIRTK----NIEYPLDRNHFLYPLTNK-------KSTCSNN 293

Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRN 168
            ++      +K   +++PAER+        D  KH+W    + + LR 
Sbjct: 294 FLSNEDIDFLKLFLRKNPAERIT-----SEDALKHEWLADTNIEDLRE 336

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           +PPF   N   +TY  I  V   +  FP  VT  A+ LI  L K +P++R       + +
Sbjct: 204 KPPF-EANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLKHNPSQRP-----MLRE 254

Query: 152 IKKHKWFQGFDWDGLRNQT 170
           + +H W           Q 
Sbjct: 255 VLEHPWITANSSKPSNCQN 273

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 55.1 bits (132), Expect = 2e-09
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 1   MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR 60
             N    +LD  +  ++ ++M    + A   VI +G  G++ +V  +GE  V  +G+ + 
Sbjct: 133 SKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVT 192

Query: 61  LLSGRPPF 68
            +S    F
Sbjct: 193 NISEGGSF 200

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 43.9 bits (103), Expect = 9e-06
 Identities = 9/57 (15%), Positives = 28/57 (49%)

Query: 1   MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
                L++L+  +   + +++   +++    ++ +GE G+D ++  EG   V++   
Sbjct: 251 SKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRS 307

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 15/86 (17%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
            PPF       +T+  I+NV    + FP  ++  ++ LI  L +  P +RL      +  
Sbjct: 209 MPPF-DSPSHTETHRRIVNV---DLKFPPFLSDGSKDLISKLLRYHPPQRL-----PLKG 259

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
           + +H W +        ++ + PP+  
Sbjct: 260 VMEHPWVKAN------SRRVLPPVYQ 279

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 54.0 bits (129), Expect = 4e-09
 Identities = 15/57 (26%), Positives = 29/57 (50%)

Query: 1   MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
            D    KNLD  Q+ +++++M +   K   +VI +G+ G++ +V   G F +     
Sbjct: 148 KDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCD 204

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 44.7 bits (105), Expect = 5e-06
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query: 5   FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
           FLK+L+  +  ++V+ +    Y     +I +G+  +  F+   GE ++    K
Sbjct: 274 FLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRK 326

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
            + + PF  + + +   + II+    +I FP    +  Q ++K   K  P +R+      
Sbjct: 233 TYGKTPFQQIINQISKLHAIIDPN-HEIEFPDIPEKDLQDVLKCCLKRDPKQRI-----S 286

Query: 149 IVDIKKHKWFQ 159
           I ++  H + Q
Sbjct: 287 IPELLAHPYVQ 297

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 4  DFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILR-- 60
             + L    + E+V ++      A   +   GE G+ +F   EG   V   +   L   
Sbjct: 17 PLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGPG 76

Query: 61 -------LLSGRP 66
                 L+SG P
Sbjct: 77 AFFGEMALISGEP 89

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
            + + PF  + + +   + II+    +I FP    +  Q ++K   K  P +R+      
Sbjct: 214 TYGKTPFQQIINQISKLHAIIDPN-HEIEFPDIPEKDLQDVLKCCLKRDPKQRI-----S 267

Query: 149 IVDIKKHKWFQ 159
           I ++  H + Q
Sbjct: 268 IPELLAHPYVQ 278

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 4  DFLKNLDTLQVKEMVESMHQAEY-KADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLL 62
              N+     +E+   M      +A   ++ +G+  +  +V   G  ++      +  L
Sbjct: 22 PAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENL 81

Query: 63 S 63
           
Sbjct: 82 F 82

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
            + + PF  + + +   + II+    +I FP    +  Q ++K   K  P +R+      
Sbjct: 261 TYGKTPFQQIINQISKLHAIIDPN-HEIEFPDIPEKDLQDVLKCCLKRDPKQRI-----S 314

Query: 149 IVDIKKHKWFQ 159
           I ++  H + Q
Sbjct: 315 IPELLAHPYVQ 325

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 8/59 (13%), Positives = 22/59 (37%)

Query: 5  FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLS 63
            +      ++ +            + +   GE+ + L     G  +VI+D +++ +L 
Sbjct: 34 AFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILG 92

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 13/70 (18%)

Query: 92  RPPFCVMNDP--MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI 149
           RPPF   +      T N ++         P  ++  A+ LI  L + +PA+RL      +
Sbjct: 209 RPPF---DTDTVKNTLNKVVLA---DYEMPSFLSIEAKDLIHQLLRRNPADRL-----SL 257

Query: 150 VDIKKHKWFQ 159
             +  H +  
Sbjct: 258 SSVLDHPFMS 267

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 5   FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGKILRL 61
              +    +V+ +   M       D  ++TEG+ G+ L +   GE  VIK   +  I  +
Sbjct: 46  LFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTI 105

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 44.5 bits (104), Expect = 6e-06
 Identities = 4/55 (7%), Positives = 16/55 (29%)

Query: 3   NDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
               +      ++++    +    +    +  +G+ G + +    G   V     
Sbjct: 47  VKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 1   MDNDFLKNLDTLQVKEMVESMHQAEY-KADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
           +    L +L T   +E+   +    + K    +  +GE G   ++  +G   V+  GK
Sbjct: 340 LHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK 397

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 43.7 bits (104), Expect = 9e-06
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           +PPF   +   +TY  I      +   PKH+   A SLI+ + +  P  R       I +
Sbjct: 212 KPPF-ETSCLKETYLRIKKN---EYSIPKHINPVAASLIQKMLQTDPTARP-----TINE 262

Query: 152 IKKHKWFQ-GFDWDGLRNQTLT-PPIIPVA 179
           +   ++F  G+    L    LT PP   +A
Sbjct: 263 LLNDEFFTSGYIPARLPITCLTIPPRFSIA 292

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 10/84 (11%)

Query: 94  PFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIK 153
           P+   +D  Q Y+          P+ K +     +L+  +  E+P+ R+      I DIK
Sbjct: 207 PWDQPSDSCQEYSDWKEKKTYLNPW-KKIDSAPLALLHKILVENPSARIT-----IPDIK 260

Query: 154 KHKWFQGFDWDGLRNQTLTPPIIP 177
           K +W+       L+     P +  
Sbjct: 261 KDRWYN----KPLKKGAKRPRVTS 280

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           +PPF   +   +TY  I      +   PKH+   A SLI+ + +  P  R       I +
Sbjct: 238 KPPF-ETSCLKETYLRIKKN---EYSIPKHINPVAASLIQKMLQTDPTARP-----TINE 288

Query: 152 IKKHKWFQ-GFDWDGLRNQTLTPP 174
           +   ++F  G+    L    LT P
Sbjct: 289 LLNDEFFTSGYIPARLPITCLTIP 312

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 94  PFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIK 153
           P+   +D  Q Y+          P+ K +     +L+  +  E+P+ R+      I DIK
Sbjct: 207 PWDQPSDSCQEYSDWKEKKTYLNPW-KKIDSAPLALLHKILVENPSARIT-----IPDIK 260

Query: 154 KHKWFQ 159
           K +W+ 
Sbjct: 261 KDRWYN 266

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 9/59 (15%), Positives = 26/59 (44%)

Query: 5   FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLS 63
             ++     ++ +   +  +      ++I +G+A   ++    G  +V+KD  +L +L 
Sbjct: 82  LFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILG 140

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 8/51 (15%), Positives = 22/51 (43%)

Query: 5  FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKD 55
            +N+D   +  + E +    +   +Y++ EG+  N++     G  + +  
Sbjct: 13 LFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTT 63

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 8/87 (9%), Positives = 26/87 (29%), Gaps = 20/87 (22%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
             P    +  +     I           K++ +  ++L++   +    +RL         
Sbjct: 310 DLPI-TKDAALGGSEWIFR-------SCKNIPQPVRALLEGFLRYPKEDRLLPL-----Q 356

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIPV 178
             +   ++       + +T     +P+
Sbjct: 357 AMETPEYE-------QLRTELSAALPL 376

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 1  MDNDFLKN------LDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK 54
          +    L++      L  +Q++E++ S          YV  +GE  +  +    G  ++ +
Sbjct: 9  VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYR 68

Query: 55 ---DGK--ILRLLS 63
             +G+  IL + +
Sbjct: 69 LTPEGQEKILEVTN 82

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 6/69 (8%)

Query: 90  FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI 149
           F   P+ ++     +  + +   +  IP     +     L+ ++    P +R       I
Sbjct: 241 FGEGPYDMVFQKGDSVALAVQNQL-SIPQSPRHSSALWQLLNSMMTVDPHQRP-----HI 294

Query: 150 VDIKKHKWF 158
             +      
Sbjct: 295 PLLLSQLEA 303

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 5  FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--IL 59
              LD  Q  E+  SM +      + +  EG+ G+ L+V  EG+ ++ +   DG+  +L
Sbjct: 12 LFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENML 71

Query: 60 RLL 62
           ++
Sbjct: 72 AVV 74

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 53/199 (26%)

Query: 4   DFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLS 63
            F+ N D   V++M +S           ++++ E  + + +S +           LRL  
Sbjct: 28  AFVDNFDCKDVQDMPKS-----------ILSKEEI-DHIIMSKDAVSGT------LRLF- 68

Query: 64  GRPPFCVMNDPMQTYNMIINVGIDNIFS----------RPPFCVMNDPMQTYNMIINVGI 113
               + +++   +     +   +   +           R P  +    ++  + + N   
Sbjct: 69  ----WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--- 121

Query: 114 DKIPFPK-HVTR--TAQSLIKALCKESPAERLG-YQRGGI------------VDIKKHKW 157
           D   F K +V+R      L +AL +  PA+ +      G               ++    
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 158 FQGFDWDGLRNQTLTPPII 176
           F+ F W  L+N      ++
Sbjct: 182 FKIF-WLNLKNCNSPETVL 199

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 8/50 (16%), Positives = 21/50 (42%)

Query: 5  FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK 54
          F  +L   Q+K++     +  +   + +  E    ++L +  EG  ++  
Sbjct: 13 FFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFY 62

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 5   FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--IL 59
             K      ++  +   H  +Y + + +I +GE    L+   +G   V+    +GK  IL
Sbjct: 53  LGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMIL 112

Query: 60  RLLS 63
             L+
Sbjct: 113 SYLN 116

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIP-FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           P    M   +     + +V I+  P F  +  +  + +I+ L    P +R      G   
Sbjct: 227 PFSTGMER-VNILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRP-----GART 280

Query: 152 IKKHKWFQGFDWDGLRNQTL 171
           +    W      D +  + L
Sbjct: 281 LLNSGWLPVKHQDEVIKEAL 300

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 5   FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVI-KDGKILRLLS 63
           F    D+  V  +V  +    ++  +YVI EG  G+ +F   +G   +I  DG I   LS
Sbjct: 78  FFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLS 137

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 7/62 (11%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 7  KNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--ILRL 61
           +   + +K+++       ++    V  + +   D+ +  EG  +      +GK   +  
Sbjct: 8  HHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDE 67

Query: 62 LS 63
          + 
Sbjct: 68 IK 69

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 5   FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLS 63
              N D   V  M+  +    ++  +Y+I EG  G  ++    G   V+  G     LS
Sbjct: 79  LFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLS 137

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 10/65 (15%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 4  DFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--I 58
             + ++   +  + + +   ++   + V  EGE G+ L++   G+ ++ +   DG+  +
Sbjct: 12 GIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL 71

Query: 59 LRLLS 63
          L ++ 
Sbjct: 72 LTIMG 76

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 7/67 (10%), Positives = 18/67 (26%), Gaps = 11/67 (16%)

Query: 93  PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
            P     +  Q     +  G     F   ++   +S++  + +  P  R          +
Sbjct: 254 LPH--GGEGWQQ----LRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRA-----TAEAL 302

Query: 153 KKHKWFQ 159
                 +
Sbjct: 303 LALPVLR 309

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 10/63 (15%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 5  FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--IL 59
            +N+    ++E ++ + +  ++ D  V+ +   G  L +   G  +V +    G+  +L
Sbjct: 13 LFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVL 72

Query: 60 RLL 62
            +
Sbjct: 73 GDI 75

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222

 Score = 37.6 bits (88), Expect = 9e-04
 Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 4/64 (6%)

Query: 4  DFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK--DGK--IL 59
          +    L +   +          +   + V T     N +FV  +G  +V    + +   L
Sbjct: 6  NIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISL 65

Query: 60 RLLS 63
            L+
Sbjct: 66 FYLT 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.98
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.98
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.96
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.96
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.96
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.96
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.96
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.96
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.96
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.95
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.95
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.95
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.95
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.95
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.95
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.94
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.94
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.94
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.94
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.94
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.94
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.94
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.93
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.93
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.93
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.93
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.93
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.91
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.91
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.91
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.9
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.9
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.89
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.87
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.87
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.87
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.86
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.86
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.86
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.85
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.85
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.85
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.85
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.85
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.85
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.85
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.85
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.85
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.85
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.85
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.85
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.85
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.85
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.85
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.85
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.84
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.84
3niz_A	311	Rhodanese family protein; structural genomics, str	99.84
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.84
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.84
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.83
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.83
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.83
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.83
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.83
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.83
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.83
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.83
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.83
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.83
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.82
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.82
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.82
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.82
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.82
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.82
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.82
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.82
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.82
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.82
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.82
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.82
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.82
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.82
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.82
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.82
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.81
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.81
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.81
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.81
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.81
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.81
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.81
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.81
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.81
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.81
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.81
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.81
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.81
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.81
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.81
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.81
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.81
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.81
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.81
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.8
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.8
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.8
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.8
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.8
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.8
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.8
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.8
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.8
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.8
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.8
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.79
3bhy_A	283	Death-associated protein kinase 3; death associate	99.79
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.79
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.79
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.79
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.79
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.79
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.79
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.79
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.79
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.79
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.79
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.78
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.78
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.78
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.78
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.78
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.77
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.77
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.77
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.77
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.77
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.77
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.77
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.76
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.76
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.76
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.76
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.76
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.76
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.76
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.76
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.76
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.75
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.75
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.73
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.73
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.73
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.73
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.73
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.72
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.72
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.72
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.72
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.72
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.71
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.71
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.71
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.7
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.7
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.7
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.7
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.7
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.69
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.69
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.68
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.68
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.68
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.68
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.68
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.68
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.68
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.68
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.68
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.68
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.67
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.67
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.67
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.67
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.67
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.67
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.67
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.66
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.66
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.66
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.66
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.66
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.66
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.65
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.65
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.65
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.65
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.65
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.65
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.65
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.64
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.64
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.64
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.64
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.64
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.64
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.63
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.63
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.63
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.63
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.63
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.63
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.62
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.62
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.62
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.62
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.62
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.62
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.61
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.61
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.61
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.61
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.61
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.6
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.6
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.6
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.6
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.59
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.59
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.59
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.57
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.57
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.57
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.56
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.55
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.55
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.55
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.54
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.53
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.53
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.53
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.52
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.52
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.49
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.47
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.43
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.38
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.16
3uqc_A	286	Probable conserved transmembrane protein; structur	98.96
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	98.63
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	97.89
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	97.63
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	95.27

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=2.4e-35  Score=236.41  Aligned_cols=157  Identities=26%  Similarity=0.481  Sum_probs=138.2

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+..+.||+.||+|||++     ||||+|||++.+  + .+||+|||+++.... .....+.+||+.|||   |    |+
T Consensus       128 ~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~--g-~vKl~DFGla~~~~~~~~~~~~~~GT~~YmA---P----E~  197 (304)
T 3ubd_A          128 VKFYLAELALALDHLHSLGIIYRDLKPENILLDEE--G-HIKLTDFGLSKESIDHEKKAYSFCGTVEYMA---P----EV  197 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTT--S-CEEEESSEEEEC-----CCCCSCCCCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCC--C-CEEecccccceeccCCCccccccccCcccCC---H----HH
Confidence            345678999999999998     899999999885  3 499999999986543 345567899999999   9    99


Q ss_pred             hhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      +.+.+|+.              ++|.+||. +.+..+++.+|. .  ..+.+|..+|+++++||.+||.+||.+||++..
T Consensus       198 ~~~~~y~~~~DiwSlGvilyemltG~~PF~-~~~~~~~~~~i~-~--~~~~~p~~~s~~~~~li~~~L~~dP~~R~ta~~  273 (304)
T 3ubd_A          198 VNRRGHTQSADWWSFGVLMFEMLTGTLPFQ-GKDRKETMTMIL-K--AKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGP  273 (304)
T ss_dssp             HHTSCCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-H--CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCST
T ss_pred             hccCCCCCCCcccchHHHHHHHHhCCCCCC-CcCHHHHHHHHH-c--CCCCCCCcCCHHHHHHHHHHcccCHHHCCCCCc
Confidence            98888876              99999999 999999999998 3  477889999999999999999999999999877


Q ss_pred             CChhhhhcCCCCCCCChhhhhcccCCCCccC
Q psy3184         147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP  177 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p  177 (185)
                      .+++++++||||++++|..+..+++.|||+|
T Consensus       274 ~~~~eil~Hp~f~~idw~~l~~~~~~pP~~P  304 (304)
T 3ubd_A          274 DGVEEIKRHSFFSTIDWNKLYRREIHPPFKP  304 (304)
T ss_dssp             TTHHHHHTSGGGTTCCHHHHHTTCSCCSSCC
T ss_pred             CCHHHHHcCccccCCCHHHHHhCCCCcCcCC
Confidence            7789999999999999999999999999998

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.98  E-value=2.1e-32  Score=219.74  Aligned_cols=150  Identities=20%  Similarity=0.385  Sum_probs=128.1

Q ss_pred             hhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCccc
Q psy3184           6 LKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQT   77 (185)
Q Consensus         6 ~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~   77 (185)
                      ..+....||+.||+|||++     ||||+|||++.+.   .+||+|||+++.+...   ....++|||+.|||   |   
T Consensus       133 ~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g---~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmA---P---  203 (311)
T 4aw0_A          133 CTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDM---HIQITDFGTAKVLSPESKQARANSFVGTAQYVS---P---  203 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS---CEEECCCTTCEECCTTTTCCCBCCCCSCGGGCC---H---
T ss_pred             HHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCC---CEEEEEcCCceecCCCCCcccccCcccCcccCC---H---
Confidence            3455689999999999998     8999999998853   4999999999987542   34567899999999   9   


Q ss_pred             ccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          78 YNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        78 ~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                       |++.+.+|+.              ++|.+||. +.+..+++.+|. .  ..+.+|..+|+++++||.+||.+||.+|++
T Consensus       204 -Evl~~~~y~~~~DiWSlGvilyeml~G~~PF~-~~~~~~~~~~i~-~--~~~~~p~~~s~~~~dli~~lL~~dp~~R~t  278 (311)
T 4aw0_A          204 -ELLTEKSACKSSDLWALGCIIYQLVAGLPPFR-AGNEGLIFAKII-K--LEYDFPEKFFPKARDLVEKLLVLDATKRLG  278 (311)
T ss_dssp             -HHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-H--TCCCCCTTCCHHHHHHHHHHSCSSGGGSTT
T ss_pred             -HHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHH-c--CCCCCCcccCHHHHHHHHHHccCCHhHCcC
Confidence             9998888876              99999999 999999999998 3  478899999999999999999999999996


Q ss_pred             CCC-CChhhhhcCCCCCCCChhhhhcc
Q psy3184         144 YQR-GGIVDIKKHKWFQGFDWDGLRNQ  169 (185)
Q Consensus       144 ~~~-~~~~~ll~hp~f~~~~~~~~~~~  169 (185)
                      +.+ .....|++||||++++|+.+.++
T Consensus       279 ~~e~~~~~~i~~Hp~F~~idw~~l~~~  305 (311)
T 4aw0_A          279 CEEMEGYGPLKAHPFFESVTWENLHQQ  305 (311)
T ss_dssp             SGGGTCHHHHHTSGGGTTCCCTTGGGS
T ss_pred             hHHHcCCHHHHCCCCcCCCCHHHhcCC
Confidence            521 12334799999999999999876

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.98  E-value=3.3e-32  Score=236.88  Aligned_cols=162  Identities=21%  Similarity=0.355  Sum_probs=138.7

Q ss_pred             hhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccc
Q psy3184           6 LKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         6 ~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+++.++||+.||+|||++     ||||+||||+.+  + .++|+|||+++.+... ...+.|||+.|||   |    |+
T Consensus       293 ~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~--G-~vKL~DFGlA~~~~~~-~~~t~~GTp~YmA---P----Ev  361 (689)
T 3v5w_A          293 DMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEH--G-HVRISDLGLACDFSKK-KPHASVGTHGYMA---P----EV  361 (689)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTT--S-CEEECCCTTCEECSSC-CCCSCCSCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCC--C-CEEecccceeeecCCC-CCCCccCCcCccC---H----HH
Confidence            4567799999999999998     899999999986  3 3999999999876543 4567899999999   9    98


Q ss_pred             hhc-cCcce--------------eccCCCCCCCC---ChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCccc
Q psy3184          81 IIN-VGIDN--------------IFSRPPFCVMN---DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        81 ~~~-~~~~~--------------l~g~~Pf~~~~---~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                      +.. .+|+.              ++|.+||. +.   +..++...+.   ...+.+|..+|+++++||.+||.+||.+|+
T Consensus       362 l~~~~~y~~~vDiWSLGvilYEmLtG~~PF~-~~~~~~~~~i~~~i~---~~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl  437 (689)
T 3v5w_A          362 LQKGVAYDSSADWFSLGCMLFKLLRGHSPFR-QHKTKDKHEIDRMTL---TMAVELPDSFSPELRSLLEGLLQRDVNRRL  437 (689)
T ss_dssp             HSTTCCCCTHHHHHHHHHHHHHHHHSSCTTC-GGGCCCHHHHHHHHH---HCCCCCCTTSCHHHHHHHHHHTCSCGGGCT
T ss_pred             HhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHhhc---CCCCCCCccCCHHHHHHHHHHccCCHhHCC
Confidence            864 56765              99999997 43   4456666676   347889999999999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         143 GYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      ++..++++++++||||++++|+.+..+++.|||+|.+.+.
T Consensus       438 ~~~~~ga~ei~~HpfF~~idW~~l~~~~~~pP~~P~~~~~  477 (689)
T 3v5w_A          438 GCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEV  477 (689)
T ss_dssp             TCSSSTHHHHTTSGGGTTCCHHHHHTTCSCCSCCCCTTCS
T ss_pred             CCCCCCHHHHhcCccccCCCHHHHHcCCCCcCccCCCCCC
Confidence            9877789999999999999999999999999999977644

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.96  E-value=1.8e-29  Score=206.14  Aligned_cols=161  Identities=22%  Similarity=0.415  Sum_probs=141.5

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ...+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++... .+....+.+||+.|+|   |    |++
T Consensus       124 ~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g---~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~a---P----E~~  193 (353)
T 2i0e_A          124 VFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEG---HIKIADFGMCKENIWDGVTTKTFCGTPDYIA---P----EII  193 (353)
T ss_dssp             HHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS---CEEECCCTTCBCCCCTTCCBCCCCSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCC---cEEEEeCCcccccccCCcccccccCCccccC---h----hhh
Confidence            44688999999999998     8999999998853   49999999998643 3345667899999999   9    988


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...+|+.              ++|.+||. +.+..+++..|. .  ..+.+|..+|.++++||++||..||.+||++...
T Consensus       194 ~~~~~~~~~DiwslG~il~ell~G~~Pf~-~~~~~~~~~~i~-~--~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~  269 (353)
T 2i0e_A          194 AYQPYGKSVDWWAFGVLLYEMLAGQAPFE-GEDEDELFQSIM-E--HNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPE  269 (353)
T ss_dssp             TTCCBSTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-H--CCCCCCTTSCHHHHHHHHHHTCSCTTSCTTCSTT
T ss_pred             cCCCcCCcccccchHHHHHHHHcCCCCCC-CCCHHHHHHHHH-h--CCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCC
Confidence            8777765              89999999 899999999998 3  4778899999999999999999999999988777


Q ss_pred             ChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         148 GIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       148 ~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                      ++++++.||||++++|..+..+++.|||+|.+.++
T Consensus       270 ~~~~i~~h~~f~~~~w~~l~~~~~~~p~~p~~~~~  304 (353)
T 2i0e_A          270 GERDIKEHAFFRYIDWEKLERKEIQPPYKPKACGR  304 (353)
T ss_dssp             HHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCCC
T ss_pred             CHHHHhcCccccCCCHHHHHhCCCCCCcCCCCCCc
Confidence            88999999999999999999999999999998765

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.96  E-value=3.8e-29  Score=202.98  Aligned_cols=163  Identities=21%  Similarity=0.478  Sum_probs=141.7

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++... .+....+.+||+.|+|   |    |++
T Consensus       108 ~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g---~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~a---P----E~~  177 (337)
T 1o6l_A          108 RFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDG---HIKITDFGLCKEGISDGATMKTFCGTPEYLA---P----EVL  177 (337)
T ss_dssp             HHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS---CEEECCCTTCBCSCCTTCCBCCCEECGGGCC---G----GGG
T ss_pred             HHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCC---CEEEeeccchhhcccCCCcccccccChhhCC---h----hhh
Confidence            44578999999999997     8999999998853   49999999998643 3445667899999999   9    888


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .+..|+.              ++|..||. +.+...++..+. .  ..+.+|..+|+++++||.+||..||.+||+....
T Consensus       178 ~~~~~~~~~DiwslG~il~ell~g~~Pf~-~~~~~~~~~~i~-~--~~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~  253 (337)
T 1o6l_A          178 EDNDYGRAVDWWGLGVVMYEMMCGRLPFY-NQDHERLFELIL-M--EEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPS  253 (337)
T ss_dssp             SSSCBCTTHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-H--CCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTT
T ss_pred             cCCCCCchhhcccchhHHHHHhcCCCCCC-CCCHHHHHHHHH-c--CCCCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCC
Confidence            7776665              89999999 888888888888 2  4678899999999999999999999999977666


Q ss_pred             ChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         148 GIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       148 ~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      +++++++||||++++|..+..+++.|||.|.+.++.|
T Consensus       254 ~~~ei~~h~~f~~~~~~~~~~~~~~pp~~p~~~~~~d  290 (337)
T 1o6l_A          254 DAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVD  290 (337)
T ss_dssp             THHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCSSTTC
T ss_pred             CHHHHHcCCCcCCCCHHHHHhCCCCCCCCCCCCCcch
Confidence            8899999999999999999999999999999987765

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.96  E-value=2.4e-29  Score=205.35  Aligned_cols=164  Identities=20%  Similarity=0.412  Sum_probs=135.7

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++... ......+.+||+.|+|   |    |+
T Consensus       126 ~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g---~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~a---P----E~  195 (353)
T 3txo_A          126 ARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEG---HCKLADFGMCKEGICNGVTTATFCGTPDYIA---P----EI  195 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS---CEEECCCTTCBCSCC---------CCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCC---CEEEccccceeecccCCccccccCCCcCeEC---h----hh
Confidence            344689999999999998     8999999998863   39999999998543 2345567899999999   9    88


Q ss_pred             hhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC-
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ-  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~-  145 (185)
                      +.+..|+.              ++|.+||. +.+..+++..|. .  ..+.+|..++.++++||++||.+||.+|+++. 
T Consensus       196 ~~~~~~~~~~DiwslG~il~ell~G~~Pf~-~~~~~~~~~~i~-~--~~~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~  271 (353)
T 3txo_A          196 LQEMLYGPAVDWWAMGVLLYEMLCGHAPFE-AENEDDLFEAIL-N--DEVVYPTWLHEDATGILKSFMTKNPTMRLGSLT  271 (353)
T ss_dssp             HHHHHCTTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-H--CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSGG
T ss_pred             cCCCCcCCccCCCcchHHHHHHHhCCCCCC-CCCHHHHHHHHH-c--CCCCCCCCCCHHHHHHHHHHhhhCHHHccCCcc
Confidence            87766665              89999999 999999999998 3  47888999999999999999999999999763 


Q ss_pred             CCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      ..+++++++||||++++|..+..+.+.|||+|.+.++.|
T Consensus       272 ~~~~~~il~hp~f~~~~w~~l~~~~~~~p~~p~~~~~~~  310 (353)
T 3txo_A          272 QGGEHAILRHPFFKEIDWAQLNHRQIEPPFRPRIKSRED  310 (353)
T ss_dssp             GTCTHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCSTTC
T ss_pred             cCCHHHHhhCCcccCCCHHHHhcCcCCCCccCCCCCccc
Confidence            355689999999999999999999999999999887654

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.96  E-value=9.1e-29  Score=204.89  Aligned_cols=164  Identities=21%  Similarity=0.430  Sum_probs=137.2

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEe-ecCcccccccCCccccccCCCcccccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI-KDGKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~-~~~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.. ..+....+.+||+.|+|   |    |+
T Consensus       155 ~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g---~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~a---P----E~  224 (396)
T 4dc2_A          155 ARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEG---HIKLTDYGMCKEGLRPGDTTSTFCGTPNYIA---P----EI  224 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS---CEEECCCTTCBCCCCTTCCBCCCCBCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCC---CEEEeecceeeecccCCCccccccCCcccCC---c----hh
Confidence            345688999999999998     8999999998863   4999999999863 34456677899999999   9    98


Q ss_pred             hhccCcce--------------eccCCCCCCCC---------ChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMN---------DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKES  137 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~---------~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~d  137 (185)
                      +.+..|+.              ++|.+||. +.         ....++..+.   ...+.+|..+|.++++||++||..|
T Consensus       225 l~~~~~~~~~DiwslGvllyell~G~~Pf~-~~~~~~~~~~~~~~~~~~~i~---~~~~~~p~~~s~~~~~li~~lL~~d  300 (396)
T 4dc2_A          225 LRGEDYGFSVDWWALGVLMFEMMAGRSPFD-IVGSSDNPDQNTEDYLFQVIL---EKQIRIPRSLSVKAASVLKSFLNKD  300 (396)
T ss_dssp             HTTCCBCTHHHHHHHHHHHHHHHHSSCSST-TTTC------CCHHHHHHHHH---HCCCCCCTTSCHHHHHHHHHHTCSC
T ss_pred             hcCCCCChHHHHHHHHHHHHHHHhCCCCCc-ccccccccchhhHHHHHHHHh---ccccCCCCcCCHHHHHHHHHHhcCC
Confidence            88877775              89999996 32         2334566666   3478899999999999999999999


Q ss_pred             cCcccCCCC-CChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         138 PAERLGYQR-GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       138 p~~R~~~~~-~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      |.+|+++.. .+++++++||||++++|+.+..+++.|||+|.+.++.|
T Consensus       301 P~~R~~~~~~~~~~ei~~Hpff~~i~w~~l~~~~~~pp~~p~~~~~~d  348 (396)
T 4dc2_A          301 PKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFG  348 (396)
T ss_dssp             TTTSTTCSTTTHHHHHHHSTTTTTCCHHHHHTTCSCCSCCCCCCSSTT
T ss_pred             HhHcCCCCCCCCHHHHhcCccccCCCHHHHHcCCCCCCCcCCCCCccc
Confidence            999997632 24689999999999999999999999999999987655

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.96  E-value=7e-29  Score=217.74  Aligned_cols=161  Identities=23%  Similarity=0.422  Sum_probs=142.6

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ....+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++... .+....+++||+.|+|   |    |+
T Consensus       444 ~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g---~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~A---P----E~  513 (674)
T 3pfq_A          444 AVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEG---HIKIADFGMCKENIWDGVTTKTFCGTPDYIA---P----EI  513 (674)
T ss_dssp             HHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSS---CEEECCCTTCEECCCTTCCBCCCCSCSSSCC---H----HH
T ss_pred             HHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCC---cEEEeecceeeccccCCcccccccCCCcccC---H----hh
Confidence            345689999999999998     8999999999863   49999999998643 3445667899999999   9    98


Q ss_pred             hhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      +....|+.              ++|.+||. +.+..+++..|.   ...+.+|..+|.++++||++||.+||.+|+++..
T Consensus       514 l~~~~~~~~~DvwSlGvilyelltG~~Pf~-~~~~~~~~~~i~---~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~  589 (674)
T 3pfq_A          514 IAYQPYGKSVDWWAFGVLLYEMLAGQAPFE-GEDEDELFQSIM---EHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGP  589 (674)
T ss_dssp             HTCCCBSTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH---SSCCCCCTTSCHHHHHHHHHHSCSSSTTCTTCST
T ss_pred             hcCCCCCccceEechHHHHHHHHcCCCCCC-CCCHHHHHHHHH---hCCCCCCccCCHHHHHHHHHHccCCHHHCCCCCC
Confidence            88777775              89999999 999999999999   4578899999999999999999999999998766


Q ss_pred             CChhhhhcCCCCCCCChhhhhcccCCCCccCCCCC
Q psy3184         147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASI  181 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~  181 (185)
                      ++++++++||||++++|+.+..+++.|||+|.+.+
T Consensus       590 ~~~~ei~~h~ff~~i~w~~l~~~~~~pp~~p~~~~  624 (674)
T 3pfq_A          590 EGERDIKEHAFFRYIDWEKLERKEIQPPYKPKASG  624 (674)
T ss_dssp             THHHHHHSSGGGSSCCHHHHTTTCSCCSCCCBCCG
T ss_pred             CcHHHHhcCccccCCCHHHHHhCCCCCCCCCcCCC
Confidence            67799999999999999999999999999998764

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.96  E-value=7.9e-29  Score=203.72  Aligned_cols=162  Identities=21%  Similarity=0.451  Sum_probs=139.0

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++... ......+.+||+.|+|   |    |++
T Consensus       142 ~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g---~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~a---P----E~~  211 (373)
T 2r5t_A          142 RFYAAEIASALGYLHSLNIVYRDLKPENILLDSQG---HIVLTDFGLCKENIEHNSTTSTFCGTPEYLA---P----EVL  211 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS---CEEECCCCBCGGGBCCCCCCCSBSCCCCCCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCC---CEEEeeCccccccccCCCccccccCCccccC---H----HHh
Confidence            44688999999999997     8999999998853   49999999997532 3445667899999999   9    988


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .+..|+.              ++|.+||. +.+..+++..|. .  ....+|..++.++++||.+||..||.+|++.. +
T Consensus       212 ~~~~~~~~~DiwslG~il~ell~G~~Pf~-~~~~~~~~~~i~-~--~~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~-~  286 (373)
T 2r5t_A          212 HKQPYDRTVDWWCLGAVLYEMLYGLPPFY-SRNTAEMYDNIL-N--KPLQLKPNITNSARHLLEGLLQKDRTKRLGAK-D  286 (373)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHHHSSCTTC-CSBHHHHHHHHH-H--SCCCCCSSSCHHHHHHHHHHTCSSGGGSTTTT-T
T ss_pred             CCCCCCchhhhHHHHHHHHHHHcCCCCCC-CCCHHHHHHHHH-h--cccCCCCCCCHHHHHHHHHHcccCHHhCCCCC-C
Confidence            8777765              89999999 889999999998 3  36788889999999999999999999999873 5


Q ss_pred             ChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         148 GIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       148 ~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      .+.++++||||++++|+.+.++++.|||+|.+.++.|
T Consensus       287 ~~~~i~~h~~f~~~~w~~l~~~~~~pp~~p~~~~~~d  323 (373)
T 2r5t_A          287 DFMEIKSHVFFSLINWDDLINKKITPPFNPNVSGPND  323 (373)
T ss_dssp             THHHHHTSGGGTTCCHHHHHTTCSCCSCCCSCCC---
T ss_pred             CHHHHhCCccccCCCHHHHHhCCCCCCCCCCCCCcch
Confidence            6789999999999999999999999999999887654

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.96  E-value=2.7e-28  Score=198.82  Aligned_cols=161  Identities=28%  Similarity=0.520  Sum_probs=141.2

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ...+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++....  ...+.+||+.|+|   |    |++.
T Consensus       144 ~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g---~~kL~DFg~a~~~~~--~~~~~~gt~~y~a---P----E~~~  211 (350)
T 1rdq_E          144 RFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQG---YIQVTDFGFAKRVKG--RTWTLCGTPEALA---P----EIIL  211 (350)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS---CEEECCCTTCEECSS--CBCCCEECGGGCC---H----HHHT
T ss_pred             HHHHHHHHHHHHHHHHCCcccccCccceEEECCCC---CEEEcccccceeccC--CcccccCCccccC---H----HHhc
Confidence            34578999999999998     8999999998853   499999999986643  3456789999999   9    8888


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..|+.              ++|.+||. +.+..+++..+. .+  .+.+|..++.++++||.+||..||.+||+...++
T Consensus       212 ~~~~~~~~DiwslG~il~ell~g~~Pf~-~~~~~~~~~~i~-~~--~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~  287 (350)
T 1rdq_E          212 SKGYNKAVDWWALGVLIYEMAAGYPPFF-ADQPIQIYEKIV-SG--KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNG  287 (350)
T ss_dssp             TCCBCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HC--CCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTT
T ss_pred             CCCCCCcCCEecccHhHhHHhhCCCCCC-CCCHHHHHHHHH-cC--CCCCCCCCCHHHHHHHHHHhhcCHHhccCCccCC
Confidence            777665              89999999 888899999988 33  6788999999999999999999999999876777


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      ++++++||||++++|..+..+.+.|||+|.+.++.|
T Consensus       288 ~~ei~~h~~f~~~~w~~~~~~~~~~p~~p~~~~~~~  323 (350)
T 1rdq_E          288 VNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGD  323 (350)
T ss_dssp             THHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCSTTC
T ss_pred             HHHHHhCcCcCCCCHHHHhhccCCCCCCCCCCCccc
Confidence            999999999999999999999999999999887655

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.95  E-value=2.2e-28  Score=199.06  Aligned_cols=158  Identities=20%  Similarity=0.418  Sum_probs=128.6

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ...+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.... .....+.+||+.|+|   |    |++
T Consensus       121 ~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g---~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~a---P----E~~  190 (345)
T 1xjd_A          121 TFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDG---HIKIADFGMCKENMLGDAKTNTFCGTPDYIA---P----EIL  190 (345)
T ss_dssp             HHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS---CEEECCCTTCBCCCCTTCCBCCCCSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCC---CEEEeEChhhhhcccCCCcccCCCCCcccCC---h----hhh
Confidence            34588999999999998     8999999998853   499999999986533 334567899999999   9    988


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .+..|+.              ++|..||. +.+..+++..+. .  ..+.+|..+|.++++||.+||..||.+||+.   
T Consensus       191 ~~~~~~~~~DiwslG~il~ell~g~~Pf~-~~~~~~~~~~i~-~--~~~~~p~~~s~~~~~li~~lL~~dp~~R~~~---  263 (345)
T 1xjd_A          191 LGQKYNHSVDWWSFGVLLYEMLIGQSPFH-GQDEEELFHSIR-M--DNPFYPRWLEKEAKDLLVKLFVREPEKRLGV---  263 (345)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-H--CCCCCCTTSCHHHHHHHHHHSCSSGGGSBTT---
T ss_pred             cCCCCCChhhhHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHH-h--CCCCCCcccCHHHHHHHHHHhcCCHhHcCCC---
Confidence            8777765              89999999 889999999888 3  3678888999999999999999999999955   


Q ss_pred             Chh-hhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         148 GIV-DIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       148 ~~~-~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                        . ++++||||++++|..+..+++.|||+|.+.++.|
T Consensus       264 --~~~i~~hp~f~~~~w~~l~~~~~~~p~~p~~~~~~d  299 (345)
T 1xjd_A          264 --RGDIRQHPLFREINWEELERKEIDPPFRPKVKSPFD  299 (345)
T ss_dssp             --BSCGGGSGGGTTCCHHHHHTTCSCC-----------
T ss_pred             --hHHHHcCccccCCCHHHHhhCCCCCCcCCCCCCcch
Confidence              6 9999999999999999999999999999877654

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.95  E-value=5.2e-28  Score=194.72  Aligned_cols=158  Identities=22%  Similarity=0.458  Sum_probs=137.7

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ...+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++....  ...+.+||+.|+|   |    |++.
T Consensus       109 ~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g---~~kL~Dfg~a~~~~~--~~~~~~gt~~y~a---P----E~~~  176 (318)
T 1fot_A          109 KFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNG---HIKITDFGFAKYVPD--VTYTLCGTPDYIA---P----EVVS  176 (318)
T ss_dssp             HHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTS---CEEECCCSSCEECSS--CBCCCCSCTTTCC---H----HHHT
T ss_pred             HHHHHHHHHHHHHHHHCCccccCCChheEEEcCCC---CEEEeecCcceecCC--ccccccCCccccC---H----hHhc
Confidence            44578999999999997     8999999998753   499999999986533  3456799999999   9    8888


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..|+.              ++|..||. +.+....+..+. .  ..+.+|..++.++++||.+||..||.+|++..+.+
T Consensus       177 ~~~~~~~~DiwslG~il~ell~g~~pf~-~~~~~~~~~~i~-~--~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~  252 (318)
T 1fot_A          177 TKPYNKSIDWWSFGILIYEMLAGYTPFY-DSNTMKTYEKIL-N--AELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNG  252 (318)
T ss_dssp             TCCBCTTHHHHHHHHHHHHHHHSSCTTC-CSSHHHHHHHHH-H--CCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTT
T ss_pred             CCCCCcccchhhhHHHHHHHHhCCCCCC-CCCHHHHHHHHH-h--CCCCCCCCCCHHHHHHHHHHhccCHHHcCCCcCCC
Confidence            776665              89999999 888888998888 3  36788899999999999999999999999887778


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASI  181 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~  181 (185)
                      ++++++||||++++|..+..+.+.|||.|.+.+
T Consensus       253 ~~~i~~hp~f~~~~~~~~~~~~~~~p~~p~~~~  285 (318)
T 1fot_A          253 TEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQQ  285 (318)
T ss_dssp             THHHHTSGGGSSCCHHHHHTTCSCCSCCCCC--
T ss_pred             HHHHhcCccccCCCHHHHHhCCCCCCCCCCcCC
Confidence            899999999999999999999999999998863

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.95  E-value=7.1e-29  Score=196.32  Aligned_cols=134  Identities=23%  Similarity=0.375  Sum_probs=106.3

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+....||+.||+|||++     ||||+||+++.+.   +++|+|||+++.........+.+||+.|||   |    |++
T Consensus       114 ~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~---~vkl~DFGla~~~~~~~~~~~~~GT~~Y~A---P----E~~  183 (275)
T 3hyh_A          114 ARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHL---NVKIADFGLSNIMTDGNFLKTSCGSPNYAA---P----EVI  183 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTC---CEEECCSSCC---------------CTTSC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCC---CEEEeecCCCeecCCCCccCCeeECcccCC---h----hhh
Confidence            344578999999999998     8999999998853   499999999987766666678899999999   9    999


Q ss_pred             hccCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..|..               ++|.+||. +.+..+++..+. .  ..+.+|..+|+++++||.+||..||.+||    
T Consensus       184 ~~~~y~~~~~DiwSlGvily~lltg~~PF~-~~~~~~~~~~i~-~--~~~~~p~~~s~~~~~li~~~L~~dP~~R~----  255 (275)
T 3hyh_A          184 SGKLYAGPEVDVWSCGVILYVMLCRRLPFD-DESIPVLFKNIS-N--GVYTLPKFLSPGAAGLIKRMLIVNPLNRI----  255 (275)
T ss_dssp             SSSSCCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-H--TCCCCCTTSCHHHHHHHHHHSCSSGGGSC----
T ss_pred             cCCCCCCChhhhHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHH-c--CCCCCCCCCCHHHHHHHHHHccCChhHCc----
Confidence            8877653               99999999 889999999988 3  37788999999999999999999999999    


Q ss_pred             CChhhhhcCCCCC
Q psy3184         147 GGIVDIKKHKWFQ  159 (185)
Q Consensus       147 ~~~~~ll~hp~f~  159 (185)
                       +++++++||||+
T Consensus       256 -s~~eil~hpw~k  267 (275)
T 3hyh_A          256 -SIHEIMQDDWFK  267 (275)
T ss_dssp             -CHHHHHHCHHHH
T ss_pred             -CHHHHHcCcccc
Confidence             669999999996

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.95  E-value=9.5e-28  Score=200.94  Aligned_cols=162  Identities=22%  Similarity=0.491  Sum_probs=138.6

Q ss_pred             ccHHHHHHHHHHHhh-c-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccch
Q psy3184           9 LDTLQVKEMVESMHQ-A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~-~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ..+.||+.||+|||+ .     ||||+||+++.+.   .++|+|||+++... ........+||+.|+|   |    |++
T Consensus       252 ~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~---~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~a---P----E~~  321 (446)
T 4ejn_A          252 FYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDG---HIKITDFGLCKEGIKDGATMKTFCGTPEYLA---P----EVL  321 (446)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSS---CEEECCCCCCCTTCC-----CCSSSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCC---CEEEccCCCceeccCCCcccccccCCccccC---H----hhc
Confidence            347899999999997 5     8999999998853   49999999987532 2344556899999999   9    888


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .+..|+.              ++|..||. +.+...+...+.   .....+|..+++++.+||.+||..||.+||+....
T Consensus       322 ~~~~~~~~~DiwslG~il~ell~g~~Pf~-~~~~~~~~~~i~---~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~  397 (446)
T 4ejn_A          322 EDNDYGRAVDWWGLGVVMYEMMCGRLPFY-NQDHEKLFELIL---MEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSE  397 (446)
T ss_dssp             HTSCCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH---HCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTT
T ss_pred             CCCCCCCccchhhhHHHHHHHhhCCCCCC-CCCHHHHHHHHH---hCCCCCCccCCHHHHHHHHHHcccCHHHhCCCCCC
Confidence            7776665              89999999 888888888888   34678888999999999999999999999987777


Q ss_pred             ChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         148 GIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       148 ~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      +++++++||||++++|+.+..+.+.|||.|.+.++.|
T Consensus       398 t~~ell~hp~f~~~~~~~~~~~~~~pp~~p~~~~~~~  434 (446)
T 4ejn_A          398 DAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSETD  434 (446)
T ss_dssp             THHHHHTSGGGTTCCHHHHHTTCSCCSCCCSCSSTTC
T ss_pred             CHHHHHhCccccCCCHHHHhhCcCCCCccCCCCCccc
Confidence            8899999999999999999999999999999988765

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.95  E-value=1.1e-27  Score=194.77  Aligned_cols=164  Identities=22%  Similarity=0.439  Sum_probs=135.0

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee-cCcccccccCCccccccCCCcccccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~-~~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ....+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++... .+....+.+||+.|+|   |    |+
T Consensus       112 ~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g---~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~a---P----E~  181 (345)
T 3a8x_A          112 ARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEG---HIKLTDYGMCKEGLRPGDTTSTFCGTPNYIA---P----EI  181 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS---CEEECCGGGCBCSCCTTCCBCCCCSCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCC---CEEEEeccccccccCCCCcccccCCCccccC---c----cc
Confidence            344578999999999998     8999999998853   49999999998643 3445667899999999   9    88


Q ss_pred             hhccCcce--------------eccCCCCCCC---------CChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVM---------NDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKES  137 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~---------~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~d  137 (185)
                      +.+..|+.              ++|..||. .         .+...++..+. .  ..+.+|..+|.++++||++||..|
T Consensus       182 ~~~~~~~~~~DiwslG~il~ell~g~~pf~-~~~~~~~~~~~~~~~~~~~i~-~--~~~~~p~~~s~~~~~li~~lL~~d  257 (345)
T 3a8x_A          182 LRGEDYGFSVDWWALGVLMFEMMAGRSPFD-IVGSSDNPDQNTEDYLFQVIL-E--KQIRIPRSLSVKAASVLKSFLNKD  257 (345)
T ss_dssp             HTTCCBCTHHHHHHHHHHHHHHHHSSCTTT-TTTC-------CHHHHHHHHH-H--CCCCCCTTSCHHHHHHHHHHTCSS
T ss_pred             cCCCCCChHHhHHHHHHHHHHHHhCCCCcC-CcccccccccccHHHHHHHHH-c--CCCCCCCCCCHHHHHHHHHHhcCC
Confidence            88777765              89999997 4         23445566666 2  467889999999999999999999


Q ss_pred             cCcccCCC-CCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         138 PAERLGYQ-RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       138 p~~R~~~~-~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      |.+||++. ..++.++++||||++++|+.+..+.+.|||.|.+.++.|
T Consensus       258 P~~R~~~~~~~~~~~i~~hp~f~~~~w~~~~~~~~~~p~~p~~~~~~~  305 (345)
T 3a8x_A          258 PKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFG  305 (345)
T ss_dssp             TTTSTTCCTTTHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCTTTC
T ss_pred             HhHCCCCCCcCCHHHHhcCCccCCCCHHHHHhCCCCCCcCCCCCCcch
Confidence            99999752 224689999999999999999999999999999887654

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.95  E-value=9.1e-28  Score=195.36  Aligned_cols=138  Identities=18%  Similarity=0.299  Sum_probs=116.6

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .....||+.||+|||++     ||||+|||++.+.   ++||+|||+++.+... ....+++||+.|||   |    |++
T Consensus       173 ~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g---~vKl~DFGla~~~~~~~~~~~~~~GTp~YmA---P----Evl  242 (346)
T 4fih_A          173 AAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG---RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMA---P----ELI  242 (346)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC---CEEECCCTTCEECCSSSCCBCCCCSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCC---CEEEecCcCceecCCCCCcccccccCcCcCC---H----HHH
Confidence            44578999999999998     8999999998863   4999999999877543 45667899999999   9    999


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...+|+.              ++|.+||. +.+..+++..|.......+..+..+|+++++||.+||.+||.+||     
T Consensus       243 ~~~~y~~~~DiWSlGvilyeml~G~~PF~-~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~-----  316 (346)
T 4fih_A          243 SRLPYGPEVDIWSLGIMVIEMVDGEPPYF-NEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRA-----  316 (346)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCTTT-TSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSC-----
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCCChhHCc-----
Confidence            8888876              99999999 889899988887422223344467999999999999999999999     


Q ss_pred             ChhhhhcCCCCCCC
Q psy3184         148 GIVDIKKHKWFQGF  161 (185)
Q Consensus       148 ~~~~ll~hp~f~~~  161 (185)
                      +++++++||||+..
T Consensus       317 ta~e~l~Hp~~~~~  330 (346)
T 4fih_A          317 TAAELLKHPFLAKA  330 (346)
T ss_dssp             CHHHHTTCGGGGGC
T ss_pred             CHHHHhcCHhhcCC
Confidence            66999999999753

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.94  E-value=2.6e-27  Score=196.96  Aligned_cols=161  Identities=21%  Similarity=0.393  Sum_probs=134.4

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCccccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .+..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++......  ...+.+||+.|+|   |    |
T Consensus       170 ~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g---~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~A---P----E  239 (410)
T 3v8s_A          170 ARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSG---HLKLADFGTCMKMNKEGMVRCDTAVGTPDYIS---P----E  239 (410)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS---CEEECCCTTCEECCTTSEEECCSCCSCGGGCC---H----H
T ss_pred             HHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCC---CEEEeccceeEeeccCCcccccCCcCCccccC---H----H
Confidence            445689999999999998     8999999998853   49999999998775543  3447899999999   9    8


Q ss_pred             chhccC----cce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC--CCCHHHHHHHHHHhhcCcC
Q psy3184          80 MIINVG----IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        80 ~~~~~~----~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~--~~s~~~~~li~~~l~~dp~  139 (185)
                      ++...+    |+.              ++|.+||. +.+...++..|. .+...+.+|.  .+|.++++||.+||..+|.
T Consensus       240 ~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~-~~~~~~~~~~i~-~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~  317 (410)
T 3v8s_A          240 VLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFY-ADSLVGTYSKIM-NHKNSLTFPDDNDISKEAKNLICAFLTDREV  317 (410)
T ss_dssp             HHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTC-CSSHHHHHHHHH-THHHHCCCCTTCCCCHHHHHHHHHHSSCGGG
T ss_pred             HhhccCCCcCCCCcceEecchHHHHHHHhCCCCCC-CCChhhHHHHHH-hccccccCCCcccccHHHHHHHHHHccChhh
Confidence            887654    443              89999999 999999998887 3323455664  6999999999999997777


Q ss_pred             c--ccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         140 E--RLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       140 ~--R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      +  |+     +++++++||||++++|..+..+++.|||+|.+.++.|
T Consensus       318 rlgR~-----~~~ei~~Hp~f~~~~w~~~~~~~~~~p~~p~~~~~~d  359 (410)
T 3v8s_A          318 RLGRN-----GVEEIKRHLFFKNDQWAWETLRDTVAPVVPDLSSDID  359 (410)
T ss_dssp             CTTSS-----CHHHHHTSGGGCCSSCCSTTGGGSCCSCCCCCSSTTC
T ss_pred             hCCCC-----CHHHHhcCccccCCCHHHHhhcccCCCCCCcCCCccc
Confidence            6  77     7799999999999999999999999999999987765

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.94  E-value=4.3e-27  Score=195.87  Aligned_cols=138  Identities=19%  Similarity=0.317  Sum_probs=117.3

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .....||+.||+|||++     ||||+||||+.+  + .+||+|||+++.+... ....+++||+.|||   |    |++
T Consensus       250 ~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~--g-~vKl~DFGla~~~~~~~~~~~~~~GTp~YmA---P----Evl  319 (423)
T 4fie_A          250 AAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHD--G-RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMA---P----ELI  319 (423)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTT--C-CEEECCCTTCEECCSSCCCBCCCEECTTTCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCC--C-CEEEecCccceECCCCCccccccccCcCcCC---H----HHH
Confidence            34578999999999998     899999999886  3 3999999999877543 45667899999999   9    999


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .+..|+.              ++|.+||. +.+..+++..|.......+..+..+|+++++||.+||.+||.+|+     
T Consensus       320 ~~~~y~~~~DiWSlGvilyeml~G~~PF~-~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~-----  393 (423)
T 4fie_A          320 SRLPYGPEVDIWSLGIMVIEMVDGEPPYF-NEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRA-----  393 (423)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCTTT-TSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSC-----
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCChhHCc-----
Confidence            8888876              99999999 899999988887432233455567999999999999999999999     


Q ss_pred             ChhhhhcCCCCCCC
Q psy3184         148 GIVDIKKHKWFQGF  161 (185)
Q Consensus       148 ~~~~ll~hp~f~~~  161 (185)
                      ++.++|+||||+..
T Consensus       394 ta~ell~Hp~~~~~  407 (423)
T 4fie_A          394 TAAELLKHPFLAKA  407 (423)
T ss_dssp             CHHHHTTCGGGGGC
T ss_pred             CHHHHhcCHHhcCC
Confidence            66999999999754

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.94  E-value=1.1e-26  Score=199.13  Aligned_cols=159  Identities=23%  Similarity=0.485  Sum_probs=136.1

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc-cccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI-LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~-~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ...+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.+..+.. ....+||+.|+|   |    |++
T Consensus       292 ~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g---~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~A---P----E~l  361 (543)
T 3c4z_A          292 IFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDG---NVRISDLGLAVELKAGQTKTKGYAGTPGFMA---P----ELL  361 (543)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTS---CEEECCCTTCEECCTTCCCBCCCCSCTTTSC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCC---CEEEeecceeeeccCCCcccccccCCccccC---h----hhh
Confidence            34578999999999997     8999999998853   499999999987765433 445799999999   9    988


Q ss_pred             hccCcce--------------eccCCCCCCCC----ChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMN----DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~----~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                      .+..|+.              ++|.+||. +.    +...+...+.   .....+|..+|.++++||++||..||.+||+
T Consensus       362 ~~~~~~~~~DiwSlGvilyelltG~~PF~-~~~~~~~~~~~~~~i~---~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~  437 (543)
T 3c4z_A          362 LGEEYDFSVDYFALGVTLYEMIAARGPFR-ARGEKVENKELKQRVL---EQAVTYPDKFSPASKDFCEALLQKDPEKRLG  437 (543)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCSSC-CTTCCCCHHHHHHHHH---HCCCCCCTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             cCCCCChHHhcCcchHHHHHHHhCCCCCC-CCccchhHHHHHHHHh---hcccCCCcccCHHHHHHHHHhccCCHhHCCC
Confidence            8777765              89999998 54    3466777777   2467888999999999999999999999998


Q ss_pred             CCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCC
Q psy3184         144 YQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS  180 (185)
Q Consensus       144 ~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~  180 (185)
                      +..++++++++||||++++|..+..+.+.|||+|...
T Consensus       438 ~~~~~a~ei~~Hpff~~i~w~~l~~~~~~pp~~P~~~  474 (543)
T 3c4z_A          438 FRDGSCDGLRTHPLFRDISWRQLEAGMLTPPFVPDSR  474 (543)
T ss_dssp             CBTTBSHHHHTSGGGTTCCHHHHHTTCSCCSCCCCSS
T ss_pred             CcccCHHHHHcCccccCCCHHHHHcCCCCCCCCCCcc
Confidence            8666789999999999999999999999999999865

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.94  E-value=1.1e-26  Score=187.20  Aligned_cols=162  Identities=22%  Similarity=0.442  Sum_probs=130.9

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.... .......+||+.|+|   |    |++.
T Consensus       125 ~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  194 (327)
T 3a62_A          125 FYLAEISMALGHLHQKGIIYRDLKPENIMLNHQG---HVKLTDFGLCKESIHDGTVTHTFCGTIEYMA---P----EILM  194 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTS---CEEECCCSCC----------CTTSSCCTTSC---H----HHHT
T ss_pred             HHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCC---cEEEEeCCcccccccCCccccccCCCcCccC---H----hhCc
Confidence            3478999999999997     8999999998753   499999999875533 334456789999999   9    8887


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ...|+.              ++|..||. +.+.......+. .  ....+|..++.++++||.+||..||.+||++...+
T Consensus       195 ~~~~~~~~DiwslG~il~el~~g~~pf~-~~~~~~~~~~i~-~--~~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~  270 (327)
T 3a62_A          195 RSGHNRAVDWWSLGALMYDMLTGAPPFT-GENRKKTIDKIL-K--CKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGD  270 (327)
T ss_dssp             TSCCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHH-H--TCCCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTT
T ss_pred             CCCCCCcccchhHHHHHHHHHHCCCCCC-CCCHHHHHHHHH-h--CCCCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCC
Confidence            766654              89999999 888888888888 2  46788889999999999999999999999886678


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      ++++++||||++++|..+..+.+.|||.|.+.+..|
T Consensus       271 ~~e~l~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  306 (327)
T 3a62_A          271 AGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEED  306 (327)
T ss_dssp             HHHHHHSGGGSSCCHHHHHTTCSCCSCCCC------
T ss_pred             HHHHHcCCcccCCCHHHHhhccCCCCCCCCcCChhh
Confidence            899999999999999999999999999998876554

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.94  E-value=9.6e-27  Score=200.55  Aligned_cols=159  Identities=21%  Similarity=0.360  Sum_probs=136.4

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ...+.||+.||+|||++     ||||+||+++.+  + .++|+|||+++....+......+||+.|+|   |    |++.
T Consensus       289 ~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~--g-~vKL~DFGla~~~~~~~~~~~~~GT~~Y~A---P----Evl~  358 (576)
T 2acx_A          289 VFYAAEICCGLEDLHRERIVYRDLKPENILLDDH--G-HIRISDLGLAVHVPEGQTIKGRVGTVGYMA---P----EVVK  358 (576)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTT--S-CEEECCCTTCEECCTTCCEECCCSCGGGCC---H----HHHT
T ss_pred             HHHHHHHHHHHHHHHHCCEeccCCchheEEEeCC--C-CeEEEecccceecccCccccccCCCccccC---H----HHHc
Confidence            44578999999999997     899999999885  3 499999999998876666667899999999   9    8888


Q ss_pred             ccCcce--------------eccCCCCCCCC----ChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMN----DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~----~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      +..|+.              ++|.+||. +.    +...+...+.   ..+..+|..+|+++++||.+||..||.+|+++
T Consensus       359 ~~~~~~~~DiwSLGvilyeLltG~~PF~-~~~~~~~~~~i~~~i~---~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g~  434 (576)
T 2acx_A          359 NERYTFSPDWWALGCLLYEMIAGQSPFQ-QRKKKIKREEVERLVK---EVPEEYSERFSPQARSLCSQLLCKDPAERLGC  434 (576)
T ss_dssp             TCEESSHHHHHHHHHHHHHHHHSSCSSS-CSSSCCCHHHHHHHHH---HCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred             CCCCCccchHHHHHHHHHHHHhCCCCCc-ccccchhHHHHHHHhh---cccccCCccCCHHHHHHHHHhccCCHHHcCCC
Confidence            766665              89999998 54    3455666666   24677888999999999999999999999987


Q ss_pred             CCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCC
Q psy3184         145 QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS  180 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~  180 (185)
                      ..++++++++||||++++|..+..+.+.|||+|...
T Consensus       435 ~~~sa~eil~HpfF~~i~w~~l~~~~~~pp~~p~~~  470 (576)
T 2acx_A          435 RGGSAREVKEHPLFKKLNFKRLGAGMLEPPFKPDPQ  470 (576)
T ss_dssp             SSSHHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC
T ss_pred             CCCCHHHHHhChhhccCCHHHHhcCCCCCCCCCCcc
Confidence            666889999999999999999999999999999764

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.94  E-value=6e-27  Score=186.56  Aligned_cols=135  Identities=22%  Similarity=0.354  Sum_probs=108.6

Q ss_pred             ccHHHHHHHHHHHhhc-------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184           9 LDTLQVKEMVESMHQA-------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ..+.||+.||+|||++       ||||+|||+++.. + .+||+|||+++.. ......+.+|||.|||   |    |++
T Consensus       133 ~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~-g-~vKl~DFGla~~~-~~~~~~~~~GTp~YmA---P----E~~  202 (290)
T 3fpq_A          133 SWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPT-G-SVKIGDLGLATLK-RASFAKAVIGTPEFMA---P----EMY  202 (290)
T ss_dssp             HHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTT-S-CEEECCTTGGGGC-CTTSBEESCSSCCCCC---G----GGG
T ss_pred             HHHHHHHHHHHHHHHCCCCEEecccChhheeEECCC-C-CEEEEeCcCCEeC-CCCccCCcccCccccC---H----HHc
Confidence            3478999999999975       7899999997531 3 4999999999754 3345567899999999   9    877


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .+ +|+.              ++|.+||....+...++..+. .+..+..+|..+++++++||.+||.+||.+||     
T Consensus       203 ~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----  275 (290)
T 3fpq_A          203 EE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVT-SGVKPASFDKVAIPEVKEIIEGCIRQNKDERY-----  275 (290)
T ss_dssp             GT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHT-TTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSC-----
T ss_pred             CC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHH-cCCCCCCCCccCCHHHHHHHHHHccCChhHCc-----
Confidence            54 4665              999999983455666666666 44445566778999999999999999999999     


Q ss_pred             ChhhhhcCCCCCC
Q psy3184         148 GIVDIKKHKWFQG  160 (185)
Q Consensus       148 ~~~~ll~hp~f~~  160 (185)
                      +++++++||||+.
T Consensus       276 s~~e~l~Hp~~~~  288 (290)
T 3fpq_A          276 SIKDLLNHAFFQE  288 (290)
T ss_dssp             CHHHHHTSGGGC-
T ss_pred             CHHHHhcCccccC
Confidence            6699999999974

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.94  E-value=2.7e-27  Score=192.82  Aligned_cols=135  Identities=19%  Similarity=0.245  Sum_probs=116.0

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .....||+.||+|||++     ||||+|||++.+.   .+||+|||+++.+... ....+.+||+.|||   |    |++
T Consensus       128 ~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g---~vKl~DFGla~~~~~~~~~~~~~~GT~~YmA---P----E~l  197 (350)
T 4b9d_A          128 LDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDG---TVQLGDFGIARVLNSTVELARACIGTPYYLS---P----EIC  197 (350)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTC---CEEECSTTEESCCCHHHHHHHHHHSCCTTCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCC---CEEEcccccceeecCCcccccccCCCccccC---H----HHH
Confidence            34578999999999998     8999999998863   4999999999877543 23456899999999   9    999


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .+..|+.              ++|.+||. +.+..+++.+|.+ + ..+.++..+|+++++||.+||.+||.+||     
T Consensus       198 ~~~~y~~~~DiwSlGvilyemltG~~PF~-~~~~~~~~~~i~~-~-~~~~~~~~~s~~~~~li~~~L~~dP~~R~-----  269 (350)
T 4b9d_A          198 ENKPYNNKSDIWALGCVLYELCTLKHAFE-AGSMKNLVLKIIS-G-SFPPVSLHYSYDLRSLVSQLFKRNPRDRP-----  269 (350)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHH-T-CCCCCCTTSCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHc-C-CCCCCCccCCHHHHHHHHHHccCChhHCc-----
Confidence            8888876              99999999 9999999999883 3 34456778999999999999999999999     


Q ss_pred             ChhhhhcCCCCCC
Q psy3184         148 GIVDIKKHKWFQG  160 (185)
Q Consensus       148 ~~~~ll~hp~f~~  160 (185)
                      +++++++||||+.
T Consensus       270 s~~e~l~hp~~~~  282 (350)
T 4b9d_A          270 SVNSILEKGFIAK  282 (350)
T ss_dssp             CHHHHHTSHHHHT
T ss_pred             CHHHHhcCHHhhc
Confidence            6699999999964

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.93  E-value=2.1e-26  Score=191.63  Aligned_cols=161  Identities=24%  Similarity=0.483  Sum_probs=126.1

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCccccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .+..+.||+.||+|||++     ||||+||+++.+.   +++|+|||+++.......  ....+||+.|+|   |    |
T Consensus       164 ~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g---~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~A---P----E  233 (412)
T 2vd5_A          164 ARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCG---HIRLADFGSCLKLRADGTVRSLVAVGTPDYLS---P----E  233 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS---CEEECCCTTCEECCTTSCEECSSCCSCGGGCC---H----H
T ss_pred             HHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCC---CEEEeechhheeccCCCccccceeccccCcCC---H----H
Confidence            345688999999999997     8999999998853   499999999987755432  345799999999   9    8


Q ss_pred             chhc-------cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC---CCCCHHHHHHHHHHhh
Q psy3184          80 MIIN-------VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP---KHVTRTAQSLIKALCK  135 (185)
Q Consensus        80 ~~~~-------~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p---~~~s~~~~~li~~~l~  135 (185)
                      ++..       ..|+.              ++|.+||. +.+..+++.+|. .+.....+|   ..+|.++++||++||.
T Consensus       234 ~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~-~~~~~~~~~~i~-~~~~~~~~p~~~~~~s~~~~dli~~lL~  311 (412)
T 2vd5_A          234 ILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFY-ADSTAETYGKIV-HYKEHLSLPLVDEGVPEEARDFIQRLLC  311 (412)
T ss_dssp             HHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTC-CSSHHHHHHHHH-THHHHCCCC----CCCHHHHHHHHTTSS
T ss_pred             HHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCC-CCCHHHHHHHHH-hcccCcCCCccccCCCHHHHHHHHHHcC
Confidence            7763       23443              99999999 888888888887 221234444   5799999999999998


Q ss_pred             cCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         136 ESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       136 ~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                       +|.+|++.  .+++++++||||++++|+.+..  ..|||+|.+.++.|
T Consensus       312 -~p~~Rlgr--~~~~ei~~Hpff~~i~w~~l~~--~~~p~~p~~~~~~d  355 (412)
T 2vd5_A          312 -PPETRLGR--GGAGDFRTHPFFFGLDWDGLRD--SVPPFTPDFEGATD  355 (412)
T ss_dssp             -CGGGCTTT--TTHHHHHTSGGGTTCCSTTSTT--SCCSCCCC-----C
T ss_pred             -ChhhcCCC--CCHHHHhcCCCcCCCCHHHHhh--cCCCCCCcCCCccc
Confidence             99999853  4789999999999999999853  58999999876654

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.93  E-value=2.3e-26  Score=192.64  Aligned_cols=159  Identities=25%  Similarity=0.462  Sum_probs=128.9

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCccccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .+..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.......  ....+||+.|+|   |    |
T Consensus       177 ~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g---~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~A---P----E  246 (437)
T 4aw2_A          177 ARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNG---HIRLADFGSCLKLMEDGTVQSSVAVGTPDYIS---P----E  246 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS---CEEECCCTTCEECCTTSCEECCSCCSCGGGCC---H----H
T ss_pred             HHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCC---CEEEcchhhhhhcccCCCcccccccCCcCeeC---h----H
Confidence            344688999999999998     8999999998853   499999999987654332  334789999999   9    8


Q ss_pred             chh-----ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC---CCCHHHHHHHHHHhhcC
Q psy3184          80 MII-----NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK---HVTRTAQSLIKALCKES  137 (185)
Q Consensus        80 ~~~-----~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~---~~s~~~~~li~~~l~~d  137 (185)
                      ++.     ...|+.              ++|.+||. +.+..+.+.+|. .+...+.+|.   .+|+++++||++||..+
T Consensus       247 ~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~-~~~~~~~~~~i~-~~~~~~~~p~~~~~~s~~~~dLi~~lL~~~  324 (437)
T 4aw2_A          247 ILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFY-AESLVETYGKIM-NHKERFQFPTQVTDVSENAKDLIRRLICSR  324 (437)
T ss_dssp             HHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTC-CSSHHHHHHHHH-THHHHCCCCSSCCCSCHHHHHHHHTTSSCG
T ss_pred             HHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCC-CCChhHHHHhhh-hccccccCCcccccCCHHHHHHHHHHhccc
Confidence            776     233443              89999999 999999988887 3223456664   48999999999999887


Q ss_pred             cCc--ccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         138 PAE--RLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       138 p~~--R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      |.+  |+     +++++++||||++++|+.+.  .+.|||+|.+.++.|
T Consensus       325 ~~r~~r~-----~~~eil~Hpff~~i~w~~l~--~~~~p~~P~~~~~~d  366 (437)
T 4aw2_A          325 EHRLGQN-----GIEDFKKHPFFSGIDWDNIR--NCEAPYIPEVSSPTD  366 (437)
T ss_dssp             GGCTTTT-----TTHHHHTSGGGTTCCTTTGG--GSCCSCCCCCSSTTC
T ss_pred             ccccCCC-----CHHHHhCCCccCCCCHHHHh--hCCCCCCCcCCCccc
Confidence            776  66     66999999999999999984  578999999987765

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.93  E-value=3.7e-26  Score=185.29  Aligned_cols=140  Identities=15%  Similarity=0.173  Sum_probs=111.1

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc------ccccccCCccccccCCCc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK------ILRLLSGRPPFCVMNDPM   75 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~------~~~~~~gt~~y~a~~~P~   75 (185)
                      ....+.||+.||+|||++     ||||+|||++.+  +..+||+|||+++.+....      ...+++||+.|||   | 
T Consensus       152 ~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~--g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmA---P-  225 (336)
T 4g3f_A          152 ALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSD--GSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMA---P-  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTT--SCCEEECCCTTCEEC------------CCCCCCGGGCC---H-
T ss_pred             HHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCC--CCEEEEeeCCCCeEccCCCcccceecCCccccCccccC---H-
Confidence            344588999999999998     899999999885  3249999999998775432      2234689999999   9 


Q ss_pred             ccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcc
Q psy3184          76 QTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        76 ~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R  141 (185)
                         |++.+..|+.              ++|.+||. +.+..+++.+|.+.......+|..+|+++++||.+||.+||.+|
T Consensus       226 ---E~~~~~~y~~~~DiwSlGvilyemltG~~Pf~-~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  301 (336)
T 4g3f_A          226 ---EVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWT-QYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHR  301 (336)
T ss_dssp             ---HHHTTCCCCTHHHHHHHHHHHHHHHHSSCSST-TTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             ---HHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCC-CCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHccCCHhHC
Confidence               9998888876              99999999 88877888888732212235778899999999999999999999


Q ss_pred             cCCCCCChhhh-------------hcCCCCCCC
Q psy3184         142 LGYQRGGIVDI-------------KKHKWFQGF  161 (185)
Q Consensus       142 ~~~~~~~~~~l-------------l~hp~f~~~  161 (185)
                      |     ++.++             +.|||++..
T Consensus       302 ~-----sa~el~~~l~~~l~~~~~l~hPw~~~~  329 (336)
T 4g3f_A          302 A-----SAMELRRKVGKALQEVGGLKSPWKGEY  329 (336)
T ss_dssp             C-----CHHHHHHHHHHHHHHTTSSCSCSSSSC
T ss_pred             c-----CHHHHHHHHHHHHhhhhhccCCCcCCC
Confidence            9     55876             578888643

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.93  E-value=7.8e-26  Score=195.15  Aligned_cols=141  Identities=16%  Similarity=0.237  Sum_probs=122.2

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +....||+.||+|||++     ||||+||+++.+..+ .++|+|||+++.+.......+.+||+.|||   |    |++.
T Consensus       258 ~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~-~vKl~DFG~a~~~~~~~~~~~~~GT~~y~A---P----Ev~~  329 (573)
T 3uto_A          258 VEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSN-ELKLIDFGLTAHLDPKQSVKVTTGTAEFAA---P----EVAE  329 (573)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCC-CEEECCCSSCEECCTTSEEEEECSSGGGCC---H----HHHT
T ss_pred             HHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCC-CEEEeeccceeEccCCCceeeeEECccccC---H----HHhC
Confidence            44578999999999998     899999999875434 499999999998887777788899999999   9    9998


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      +.+|+.              ++|.+||. +.+..+++..|. .+  .+.+|    ..+|+++++||++||..||.+||  
T Consensus       330 ~~~y~~~~DiWSlGvilyeml~G~~Pf~-~~~~~~~~~~i~-~~--~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~--  403 (573)
T 3uto_A          330 GKPVGYYTDMWSVGVLSYILLSGLSPFG-GENDDETLRNVK-SC--DWNMDDSAFSGISEDGKDFIRKLLLADPNTRM--  403 (573)
T ss_dssp             TCCBCHHHHHHHHHHHHHHHHHSCCSSC-CSSHHHHHHHHH-TT--CCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSC--
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHH-hC--CCCCCcccccCCCHHHHHHHHHHccCChhHCc--
Confidence            888875              89999999 999999999988 33  44443    46899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCCCChhh
Q psy3184         145 QRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~~~~  165 (185)
                         ++.++++||||+...|..
T Consensus       404 ---t~~e~l~Hpw~~~~~~~~  421 (573)
T 3uto_A          404 ---TIHQALEHPWLTPGNAPG  421 (573)
T ss_dssp             ---CHHHHHHSTTTSCCCCTT
T ss_pred             ---CHHHHhcCcCcCCCCCCC
Confidence               669999999999888764

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.93  E-value=3.7e-25  Score=182.52  Aligned_cols=156  Identities=17%  Similarity=0.385  Sum_probs=130.3

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ...+.||+.||.|||++     ||||+||+++.+.   .++|+|||+++.+.......+.+||+.|+|   |    |++.
T Consensus       118 ~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g---~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~a---P----E~~~  187 (384)
T 4fr4_A          118 KLFICELVMALDYLQNQRIIHRDMKPDNILLDEHG---HVHITDFNIAAMLPRETQITTMAGTKPYMA---P----EMFS  187 (384)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS---CEEECCCTTCEECCTTCCBCCCCSCGGGCC---G----GGTC
T ss_pred             HHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCC---CEEEeccceeeeccCCCceeccCCCccccC---C----eeec
Confidence            44578999999999998     8999999998853   399999999998877667778899999999   9    8775


Q ss_pred             c---cCcce--------------eccCCCCCC--CCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          83 N---VGIDN--------------IFSRPPFCV--MNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        83 ~---~~~~~--------------l~g~~Pf~~--~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                      .   .+|+.              ++|..||..  ..+.......+.   .....+|..+|.++.+||.+||..||.+||+
T Consensus       188 ~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~---~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s  264 (384)
T 4fr4_A          188 SRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFE---TTVVTYPSAWSQEMVSLLKKLLEPNPDQRFS  264 (384)
T ss_dssp             CCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHH---HCCCCCCTTSCHHHHHHHHHHSCSSGGGSCC
T ss_pred             cCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHh---hcccCCCCcCCHHHHHHHHHHhcCCHhHhcc
Confidence            3   23443              899999972  223445555655   2467888899999999999999999999994


Q ss_pred             CCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCC
Q psy3184         144 YQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS  180 (185)
Q Consensus       144 ~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~  180 (185)
                      .    ++++++||||++++|+.+..+.+.|||+|...
T Consensus       265 ~----~~~l~~hp~f~~~~w~~~~~~~~~p~~~p~~~  297 (384)
T 4fr4_A          265 Q----LSDVQNFPYMNDINWDAVFQKRLIPGFIPNKG  297 (384)
T ss_dssp             S----HHHHHTSGGGTTCCHHHHHTTCSCCCCCCSCC
T ss_pred             c----HHHHHcChhhhcCCHHHHHhCCCCCCCCCCCC
Confidence            2    69999999999999999999999999998754

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.91  E-value=1.6e-24  Score=179.50  Aligned_cols=141  Identities=15%  Similarity=0.225  Sum_probs=110.6

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-----CcccccccCCccccccCCCcc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-----GKILRLLSGRPPFCVMNDPMQ   76 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-----~~~~~~~~gt~~y~a~~~P~~   76 (185)
                      .+..+.||+.||+|||++     ||||+||+++.+.   .++++|||+++.+..     .....+++||+.|||   |  
T Consensus       160 ~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~---~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~A---P--  231 (398)
T 4b99_A          160 VRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENC---ELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRA---P--  231 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTC---CEEECCCTTCBCC-------CCCCCSSCCCCTTCC---H--
T ss_pred             HHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCC---CEEEeecceeeecccCccccccccccceeChHhcC---H--
Confidence            345688999999999998     8999999999853   499999999986533     234557899999999   9  


Q ss_pred             cccchhccC-cce--------------eccCCCCCCCCChHHHHHHHHhcCCCcc------------------CCC----
Q psy3184          77 TYNMIINVG-IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKI------------------PFP----  119 (185)
Q Consensus        77 ~~E~~~~~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~------------------~~p----  119 (185)
                        |++.+.. |+.              ++|.+||. +.+..+.+..|.. ....+                  .+|    
T Consensus       232 --Ev~~~~~~~~~~~DiWSlG~il~ell~G~~pF~-g~~~~~~l~~I~~-~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~  307 (398)
T 4b99_A          232 --ELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFP-GKNYVHQLQLIMM-VLGTPSPAVIQAVGAERVRAYIQSLPPRQP  307 (398)
T ss_dssp             --HHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSC-CSSHHHHHHHHHH-HHCCCCGGGTC-----CHHHHHHSSCCCCC
T ss_pred             --HHhcCCCCCCChhheehhHHHHHHHHHCCCCCC-CCCHHHHHHHHHH-hcCCCChHHhhhhhhhhhhhhhhcCCCcCC
Confidence              9887654 343              99999999 8888888777752 11111                  011    


Q ss_pred             -------CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         120 -------KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       120 -------~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                             ..+|+++++||.+||..||.+|+     +++++|+||||+.....
T Consensus       308 ~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~-----ta~e~L~Hp~f~~~~~p  354 (398)
T 4b99_A          308 VPWETVYPGADRQALSLLGRMLRFEPSARI-----SAAAALRHPFLAKYHDP  354 (398)
T ss_dssp             CCHHHHSTTCCHHHHHHHHHHSCSSTTTSC-----CHHHHTTSGGGTTTCCG
T ss_pred             CCHHHhCCCCCHHHHHHHHHHCcCChhHCc-----CHHHHhcCHhhCcCCCC
Confidence                   24799999999999999999999     66999999999876544

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.91  E-value=1.5e-24  Score=177.69  Aligned_cols=141  Identities=19%  Similarity=0.268  Sum_probs=102.4

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--------------------------
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--------------------------   56 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--------------------------   56 (185)
                      +....||+.||+|||++     ||||+|||++.+. + .++|+|||+++.....                          
T Consensus       120 ~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~-~-~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (361)
T 4f9c_A          120 REYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRL-K-KYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICL  197 (361)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTT-T-EEEECCCTTCEECTTCSCGGGGGC------------------
T ss_pred             HHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCC-C-eEEECcCCCCcccCCccccccccccccccccccccccccccc
Confidence            44578999999999998     8999999998752 2 5999999999755321                          


Q ss_pred             ---cccccccCCccccccCCCcccccchhccC-cce--------------eccCCCCCCCCChHHHHHHHHhc-C-----
Q psy3184          57 ---KILRLLSGRPPFCVMNDPMQTYNMIINVG-IDN--------------IFSRPPFCVMNDPMQTYNMIINV-G-----  112 (185)
Q Consensus        57 ---~~~~~~~gt~~y~a~~~P~~~~E~~~~~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~-----  112 (185)
                         ....+.+||+.|||   |    |++.+.. |+.              ++|++||..+.+..+.+..|... |     
T Consensus       198 ~~~~~~~~~~GT~~Y~A---P----E~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~~~~~l~~I~~~~G~~~~~  270 (361)
T 4f9c_A          198 SRRQQVAPRAGTPGFRA---P----EVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETI  270 (361)
T ss_dssp             --------CCCCGGGCC---H----HHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHH
T ss_pred             cccccccccccCccccC---H----HHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhcCCccch
Confidence               12345689999999   9    9887643 554              89999997455555544443210 0     


Q ss_pred             -----------------------------CCc----------------cCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184         113 -----------------------------IDK----------------IPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus       113 -----------------------------~~~----------------~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                                                   ...                ......+|++++|||++||..||.+|+     
T Consensus       271 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~-----  345 (361)
T 4f9c_A          271 QAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRI-----  345 (361)
T ss_dssp             HHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHHHHHHHHHHTCSCTTTSC-----
T ss_pred             hhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCc-----
Confidence                                         000                011135799999999999999999999     


Q ss_pred             ChhhhhcCCCCCCCC
Q psy3184         148 GIVDIKKHKWFQGFD  162 (185)
Q Consensus       148 ~~~~ll~hp~f~~~~  162 (185)
                      +++++|+||||+++.
T Consensus       346 ta~eaL~Hp~f~~i~  360 (361)
T 4f9c_A          346 TAEEALLHPFFKDMS  360 (361)
T ss_dssp             CHHHHHTSGGGTTC-
T ss_pred             CHHHHhcCcccCCCC
Confidence            669999999999864

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.91  E-value=7e-24  Score=172.65  Aligned_cols=161  Identities=21%  Similarity=0.391  Sum_probs=130.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--cccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||+++.....  ......+||+.|+|   |    |++.
T Consensus       164 ~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~---~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  233 (355)
T 1vzo_A          164 YVGEIVLALEHLHKLGIIYRDIKLENILLDSNG---HVVLTDFGLSKEFVADETERAYDFCGTIEYMA---P----DIVR  233 (355)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS---CEEESCSSEEEECCGGGGGGGCGGGSCCTTCC---H----HHHT
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCHHHEEECCCC---cEEEeeCCCCeecccCCCCcccCcccCcCccC---h----hhhc
Confidence            467999999999997     8999999998853   4999999999866432  23445789999999   9    8776


Q ss_pred             cc--Ccce--------------eccCCCCCCCC----ChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCccc
Q psy3184          83 NV--GIDN--------------IFSRPPFCVMN----DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        83 ~~--~~~~--------------l~g~~Pf~~~~----~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                      +.  .++.              ++|..||. ..    ....+...+.   ...+.+|..++..+.+||.+||..||.+||
T Consensus       234 ~~~~~~~~~~DvwslG~il~ell~g~~pf~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~L~~dP~~R~  309 (355)
T 1vzo_A          234 GGDSGHDKAVDWWSLGVLMYELLTGASPFT-VDGEKNSQAEISRRIL---KSEPPYPQEMSALAKDLIQRLLMKDPKKRL  309 (355)
T ss_dssp             TCC---CTHHHHHHHHHHHHHHHHSSCTTS-CTTSCCCHHHHHHHHH---HCCCCCCTTSCHHHHHHHHHHTCSSGGGST
T ss_pred             CCCCCCCchhhHHHHHHHHHHHHHCCCCCc-cCCccchHHHHHHHHh---ccCCCCCcccCHHHHHHHHHHhhhCHHHhc
Confidence            42  2332              89999997 33    2344455555   236678888999999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         143 GYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      ++...+++++++||||+.++|..+..+.+++||.|.+.+..|
T Consensus       310 ~~~~~s~~ell~h~~f~~~~~~~l~~~~~~~p~~p~~~~~~d  351 (355)
T 1vzo_A          310 GCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIRDELD  351 (355)
T ss_dssp             TSSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCC-CC
T ss_pred             CCCCCCHHHHHcCcchhcCChhHhhhccCCCCCCCccccccc
Confidence            876678899999999999999999999999999999987665

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.90  E-value=2.9e-24  Score=171.74  Aligned_cols=135  Identities=20%  Similarity=0.274  Sum_probs=94.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-------------ccccccCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-------------ILRLLSGRPPFCVM   71 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-------------~~~~~~gt~~y~a~   71 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .+||+|||+++.+....             ...+.+||+.||| 
T Consensus       123 i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~---~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmA-  198 (299)
T 4g31_A          123 IFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDD---VVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMS-  198 (299)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC---CEEECCCCCC--------------------------CCCTTSC-
T ss_pred             HHHHHHHHHHHHHHCcCccccCcHHHeEECCCC---cEEEccCccceecCCCccccccccccccccccCCcccCccccC-
Confidence            467999999999998     8999999998863   49999999998765421             2235689999999 


Q ss_pred             CCCcccccchhccCcce-----------eccCCCCCCCCC-hHHHHHHHHhcCCCccCCC---CCCCHHHHHHHHHHhhc
Q psy3184          72 NDPMQTYNMIINVGIDN-----------IFSRPPFCVMND-PMQTYNMIINVGIDKIPFP---KHVTRTAQSLIKALCKE  136 (185)
Q Consensus        72 ~~P~~~~E~~~~~~~~~-----------l~g~~Pf~~~~~-~~~~~~~i~~~~~~~~~~p---~~~s~~~~~li~~~l~~  136 (185)
                        |    |++.+..|+.           ..-..||. +.. .......+.     ...+|   ...++++.+||.+||..
T Consensus       199 --P----E~~~~~~y~~~~DiwSlGvilyell~Pf~-~~~~~~~~~~~~~-----~~~~p~~~~~~~~~~~~li~~~L~~  266 (299)
T 4g31_A          199 --P----EQIHGNSYSHKVDIFSLGLILFELLYPFS-TQMERVRTLTDVR-----NLKFPPLFTQKYPCEYVMVQDMLSP  266 (299)
T ss_dssp             --H----HHHTTCCCCTHHHHHHHHHHHHHHHSCCS-SHHHHHHHHHHHH-----TTCCCHHHHHHCHHHHHHHHHHTCS
T ss_pred             --H----HHHcCCCCCCHHHHHHHHHHHHHHccCCC-CccHHHHHHHHHh-----cCCCCCCCcccCHHHHHHHHHHcCC
Confidence              9    9998888876           11124887 432 223344444     23344   34578899999999999


Q ss_pred             CcCcccCCCCCChhhhhcCCCCCCCChhh
Q psy3184         137 SPAERLGYQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       137 dp~~R~~~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                      ||.+||     ++.++++||||++++|..
T Consensus       267 dP~~Rp-----s~~eil~h~~~~~~~~p~  290 (299)
T 4g31_A          267 SPMERP-----EAINIIENAVFEDLDFPG  290 (299)
T ss_dssp             SGGGSC-----CHHHHHTSGGGCCC----
T ss_pred             ChhHCc-----CHHHHhcCHhhCCCCCCC
Confidence            999999     669999999999999853

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.90  E-value=3e-23  Score=167.54  Aligned_cols=135  Identities=20%  Similarity=0.321  Sum_probs=117.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ...||+.||+|||++     ||||+||+++.+.   +++|+|||++.....+......+||+.|+|   |    |++.+.
T Consensus       119 ~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~---~~kl~DFG~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~~  188 (328)
T 3fe3_A          119 KFRQIVSAVQYCHQKRIVHRDLKAENLLLDADM---NIKIADFGFSNEFTVGGKLDAFCGAPPYAA---P----ELFQGK  188 (328)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTS---CEEECSTTCCGGGSSSCGGGTTSSSGGGCC---H----HHHHTC
T ss_pred             HHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCC---CEEEeeccCceecCCCCccccccCCcceeC---c----ccccCC
Confidence            468999999999998     8999999998853   499999999987766666778899999999   9    988876


Q ss_pred             Ccce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .|..               ++|..||. +.+..++...+. .+  .+.+|..+|+++.+||++||..||.+||     ++
T Consensus       189 ~~~~~~~DiwslG~il~ell~g~~pf~-~~~~~~~~~~i~-~~--~~~~p~~~s~~~~~li~~~L~~dP~~R~-----t~  259 (328)
T 3fe3_A          189 KYDGPEVDVWSLGVILYTLVSGSLPFD-GQNLKELRERVL-RG--KYRIPFYMSTDCENLLKRFLVLNPIKRG-----TL  259 (328)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HC--CCCCCTTSCHHHHHHHHHHCCSSTTTSC-----CH
T ss_pred             CcCCchhhhhhhHHHHHHHHhCCCCCC-CCCHHHHHHHHH-hC--CCCCCCCCCHHHHHHHHHHCCCChhHCc-----CH
Confidence            6652               89999999 999999988888 33  6788889999999999999999999999     66


Q ss_pred             hhhhcCCCCCCCCh
Q psy3184         150 VDIKKHKWFQGFDW  163 (185)
Q Consensus       150 ~~ll~hp~f~~~~~  163 (185)
                      +++++||||+....
T Consensus       260 ~eil~h~~~~~~~~  273 (328)
T 3fe3_A          260 EQIMKDRWINAGHE  273 (328)
T ss_dssp             HHHTTCTTTTTTCT
T ss_pred             HHHhcCHhhcCCCc
Confidence            99999999986543

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.89  E-value=6.5e-23  Score=167.72  Aligned_cols=143  Identities=19%  Similarity=0.276  Sum_probs=120.7

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCC-CCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEA-GNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~-~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||++..+.. ...++|+|||+++....+......+||+.|+|   |    |++.
T Consensus       119 ~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~a---P----E~~~  191 (361)
T 2yab_A          119 SFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVA---P----EIVN  191 (361)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCCCCCCCSCGGGCC---H----HHHT
T ss_pred             HHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCccccCCCCccEEC---c----hHHc
Confidence            3478999999999998     89999999986531 12499999999998877666677899999999   9    8887


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ...|+.              ++|.+||. +.+..+++..+. .+  .+.++    ..+|.++++||.+||..||.+||  
T Consensus       192 ~~~~~~~~DiwslGvil~~ll~g~~Pf~-~~~~~~~~~~i~-~~--~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~--  265 (361)
T 2yab_A          192 YEPLGLEADMWSIGVITYILLSGASPFL-GDTKQETLANIT-AV--SYDFDEEFFSQTSELAKDFIRKLLVKETRKRL--  265 (361)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSCCSSC-CSSHHHHHHHHH-TT--CCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSC--
T ss_pred             CCCCCccccHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHH-hc--CCCCCchhccCCCHHHHHHHHHHCCCChhHCc--
Confidence            766665              89999999 888889988888 33  45554    56899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCCCChhhhh
Q psy3184         145 QRGGIVDIKKHKWFQGFDWDGLR  167 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~~~~~~  167 (185)
                         ++.++++||||++.+|....
T Consensus       266 ---t~~e~l~hp~~~~~~~~~~~  285 (361)
T 2yab_A          266 ---TIQEALRHPWITPVDTQQAM  285 (361)
T ss_dssp             ---CHHHHHTSTTTSCSSHHHHH
T ss_pred             ---CHHHHhcCcCcCCCchhhhh
Confidence               66999999999999997654

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.87  E-value=1.8e-22  Score=165.79  Aligned_cols=156  Identities=18%  Similarity=0.223  Sum_probs=110.7

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec----------------------Ccccc
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD----------------------GKILR   60 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~----------------------~~~~~   60 (185)
                      ...+.||+.||+|||+.     ||||+||+++.+.   .++|+|||+++....                      .....
T Consensus       112 ~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~---~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (388)
T 3oz6_A          112 QYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAEC---HVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILT  188 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC---CEEECCCTTCEESSSCCCCCCCGGGCCC--------------
T ss_pred             HHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCC---CEEecCCccccccccccccccccccccccccccccccccccc
Confidence            34577999999999997     8999999998863   499999999986532                      11234


Q ss_pred             cccCCccccccCCCcccccchhc-cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCcc---------
Q psy3184          61 LLSGRPPFCVMNDPMQTYNMIIN-VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKI---------  116 (185)
Q Consensus        61 ~~~gt~~y~a~~~P~~~~E~~~~-~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~---------  116 (185)
                      ..+||+.|+|   |    |++.+ ..|+.              ++|.+||. +.+....+..+.... ..+         
T Consensus       189 ~~~gt~~y~a---P----E~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~-~~~~~~~~~~i~~~~-~~p~~~~~~~~~  259 (388)
T 3oz6_A          189 DYVATRWYRA---P----EILLGSTKYTKGIDMWSLGCILGEILCGKPIFP-GSSTMNQLERIIGVI-DFPSNEDVESIQ  259 (388)
T ss_dssp             -CCCGGGGCC---H----HHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHH-CCCCHHHHHTSC
T ss_pred             CCcccCCcCC---H----HHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHhc-CCCCHHHHHhcc
Confidence            5789999999   9    88765 44554              89999999 888777766664110 000         


Q ss_pred             ------------------------------------CCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         117 ------------------------------------PFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       117 ------------------------------------~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                                                          ..+..+++++.+||.+||..||.+||     +++++++||||+.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----t~~e~l~Hp~~~~  334 (388)
T 3oz6_A          260 SPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRI-----SANDALKHPFVSI  334 (388)
T ss_dssp             CSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSC-----CHHHHTTSTTTTT
T ss_pred             CHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCC-----CHHHHhCCHHHHH
Confidence                                                01126789999999999999999999     6699999999876


Q ss_pred             CC---hhhhhcccCCCCccCCCC
Q psy3184         161 FD---WDGLRNQTLTPPIIPVAS  180 (185)
Q Consensus       161 ~~---~~~~~~~~~~~p~~p~~~  180 (185)
                      +.   |.......+.+||.+...
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~  357 (388)
T 3oz6_A          335 FHNPNEEPNCDHIITIPINDNVK  357 (388)
T ss_dssp             TCCGGGCCCCSSCCCCC------
T ss_pred             hcCCccCCCCCCCCCCCcccccc
Confidence            54   444444456677766544

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.87  E-value=3.2e-22  Score=160.84  Aligned_cols=152  Identities=22%  Similarity=0.249  Sum_probs=111.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||++     ||||+||+++.......++|+|||.++...........+||+.|+|   |    |++...
T Consensus       136 i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~~  208 (327)
T 3lm5_A          136 LIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLA---P----EILNYD  208 (327)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---------CCCGGGCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccccccccCCcCccC---C----eeecCC
Confidence            478999999999998     8999999998732222499999999988766555667789999999   9    888776


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCC--ccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID--KIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~--~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      .|+.              ++|..||. +.+..+....+. ....  ....+..++.++.+||.+||..||.+||     +
T Consensus       209 ~~~~~~DiwslG~il~~ll~g~~pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----t  281 (327)
T 3lm5_A          209 PITTATDMWNIGIIAYMLLTHTSPFV-GEDNQETYLNIS-QVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRP-----T  281 (327)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSC-----C
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCC-CCCchHHHHHHH-hcccccCchhhcccCHHHHHHHHHHcCCChhhCc-----C
Confidence            6654              89999999 888777777766 2211  1222246899999999999999999999     6


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCc
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPI  175 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~  175 (185)
                      ++++++||||++.+|..+......++.
T Consensus       282 ~~~ll~h~~~~~~~~~~~~~~~~~~~~  308 (327)
T 3lm5_A          282 AEICLSHSWLQQWDFENLFHPEETSSS  308 (327)
T ss_dssp             HHHHTTCGGGCCCCTTCC---------
T ss_pred             HHHHhCCHhhcccccccccCccCCCCc
Confidence            699999999999999987766554443

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.87  E-value=1.3e-21  Score=157.53  Aligned_cols=142  Identities=18%  Similarity=0.267  Sum_probs=117.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCC-CCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEA-GNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~-~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||++     ||||+||++..+.. ...++|+|||.++....+......+||+.|+|   |    |++..
T Consensus       119 i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~  191 (326)
T 2y0a_A          119 FLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA---P----EIVNY  191 (326)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSCCCCCCSCTTTCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCccccccCCcCcCC---c----eeecC
Confidence            478999999999997     89999999987531 22499999999998876666667889999999   9    88876


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      ..|+.              ++|..||. +.+..+....+. ..  ...++    ..++.++++||.+||..||.+||   
T Consensus       192 ~~~~~~~DiwslG~il~~ll~g~~pf~-~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp---  264 (326)
T 2y0a_A          192 EPLGLEADMWSIGVITYILLSGASPFL-GDTKQETLANVS-AV--NYEFEDEYFSNTSALAKDFIRRLLVKDPKKRM---  264 (326)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSCCSSC-CSSHHHHHHHHH-HT--CCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSC---
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCcCCCC-CCCHHHHHHHHH-hc--CCCcCccccccCCHHHHHHHHHHccCChhhCC---
Confidence            66654              89999999 888888887776 22  34444    46899999999999999999999   


Q ss_pred             CCChhhhhcCCCCCCCChhhhh
Q psy3184         146 RGGIVDIKKHKWFQGFDWDGLR  167 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~~~~~~~~  167 (185)
                        ++.++++||||+..+|....
T Consensus       265 --t~~e~l~hp~~~~~~~~~~~  284 (326)
T 2y0a_A          265 --TIQDSLQHPWIKPKDTQQAL  284 (326)
T ss_dssp             --CHHHHHHSTTTSCCSHHHHH
T ss_pred             --CHHHHhcCCCccCCcchhhh
Confidence              66999999999999887653

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.86  E-value=8.8e-22  Score=159.30  Aligned_cols=128  Identities=13%  Similarity=0.163  Sum_probs=100.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+|||++.+.   .+||+|||+++.+....   .....+||+.|||   |    |++
T Consensus       163 i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~---~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymA---P----E~~  232 (329)
T 4aoj_A          163 VASQVAAGMVYLAGLHFVHRDLATRNCLVGQGL---VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMP---P----ESI  232 (329)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTT---EEEECCCC----------------CCCCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHhcCCeecccccHhhEEECCCC---cEEEcccccceeccCCCcceecCcccccccccC---h----hhh
Confidence            478999999999997     8999999999863   59999999998664432   2345689999999   9    988


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....|+.              ++ |+.||. +.+..+++..+. .+ ..+..|..+++++.+|+.+||..||.+||    
T Consensus       233 ~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~-~~~~~~~~~~i~-~g-~~~~~p~~~~~~~~~li~~cl~~dP~~RP----  305 (329)
T 4aoj_A          233 LYRKFTTESDVWSFGVVLWEIFTYGKQPWY-QLSNTEAIDCIT-QG-RELERPRACPPEVYAIMRGCWQREPQQRH----  305 (329)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHTTSCCTTC-SSCHHHHHHHHH-HT-CCCCCCTTCCHHHHHHHHHHCCSSTTTSC----
T ss_pred             cCCCCCccccccchHHHHHHHHcCCCCCCC-CCCHHHHHHHHH-cC-CCCCCcccccHHHHHHHHHHcCcChhHCc----
Confidence            8877775              56 899999 888888888887 33 46788889999999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.+++.+
T Consensus       306 -s~~ei~~~  313 (329)
T 4aoj_A          306 -SIKDVHAR  313 (329)
T ss_dssp             -CHHHHHHH
T ss_pred             -CHHHHHHH
Confidence             55887653

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.86  E-value=7.4e-22  Score=160.20  Aligned_cols=152  Identities=20%  Similarity=0.355  Sum_probs=119.8

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCC-CCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccch
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGE-AGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~-~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ..+.||+.||+|||++     ||||+||++..+. ....++|+|||+++..... ....+.+||+.|+|   |    |++
T Consensus       120 ~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~a---P----E~~  192 (342)
T 2qr7_A          120 AVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVA---P----EVL  192 (342)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccC---H----HHh
Confidence            4578999999999998     8999999986532 1224999999999876543 34557799999999   9    888


Q ss_pred             hccCcce--------------eccCCCCCCC---CChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCc
Q psy3184          82 INVGIDN--------------IFSRPPFCVM---NDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~---~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~  140 (185)
                      .+..|+.              ++|..||. +   .+..+++..+. .+  .+.++    ..+|+++++||++||..||.+
T Consensus       193 ~~~~~~~~~DiwslG~il~ell~g~~Pf~-~~~~~~~~~~~~~i~-~~--~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  268 (342)
T 2qr7_A          193 ERQGYDAACDIWSLGVLLYTMLTGYTPFA-NGPDDTPEEILARIG-SG--KFSLSGGYWNSVSDTAKDLVSKMLHVDPHQ  268 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCSSC-SSTTSCHHHHHHHHH-HC--CCCCCSTTTTTSCHHHHHHHHHHTCSSTTT
T ss_pred             cCCCCCCccCeeeHhHHHHHHhcCCCCCC-CCCcCCHHHHHHHHc-cC--CcccCccccccCCHHHHHHHHHHCCCChhH
Confidence            7665554              89999997 4   45667777777 33  33333    568999999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCC
Q psy3184         141 RLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPV  178 (185)
Q Consensus       141 R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~  178 (185)
                      ||     ++.++++||||.  +|..+....+.+|+.|.
T Consensus       269 R~-----t~~~il~hp~~~--~~~~~~~~~~~~~~~p~  299 (342)
T 2qr7_A          269 RL-----TAALVLRHPWIV--HWDQLPQYQLNRQDAPH  299 (342)
T ss_dssp             SC-----CHHHHTTSHHHH--TGGGSCCSCCCCCCCHH
T ss_pred             Cc-----CHHHHhcCCeec--CccccccccCCCccchh
Confidence            99     669999999994  68887777777777653

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.86  E-value=1.2e-21  Score=157.23  Aligned_cols=128  Identities=17%  Similarity=0.211  Sum_probs=106.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+|||++.+.   .+||+|||+++.+...   ......+||+.|||   |    |++
T Consensus       150 i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~---~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymA---P----E~l  219 (308)
T 4gt4_A          150 LVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKL---NVKISDLGLFREVYAADYYKLLGNSLLPIRWMA---P----EAI  219 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG---CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCccccceEECCCC---CEEECCcccceeccCCCceeEecccccCCcccC---H----HHH
Confidence            478999999999997     8999999999863   4999999999866432   23345689999999   9    988


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....|+.              ++ |..||. +.+..++...+. .+ ..+..|..+++++.+|+.+||..||.+||    
T Consensus       220 ~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~-~~~~~~~~~~i~-~~-~~~~~p~~~~~~~~~li~~C~~~dP~~RP----  292 (308)
T 4gt4_A          220 MYGKFSIDSDIWSYGVVLWEVFSYGLQPYC-GYSNQDVVEMIR-NR-QVLPCPDDCPAWVYALMIECWNEFPSRRP----  292 (308)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTTCCTTT-TCCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             hCCCCCccchhhhHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-cC-CCCCCcccchHHHHHHHHHHcCCChhHCc----
Confidence            8877776              55 899999 888889988888 33 35677889999999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.+|+.+
T Consensus       293 -s~~ei~~~  300 (308)
T 4gt4_A          293 -RFKDIHSR  300 (308)
T ss_dssp             -CHHHHHHH
T ss_pred             -CHHHHHHH
Confidence             45887764

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.85  E-value=3.3e-21  Score=153.12  Aligned_cols=136  Identities=14%  Similarity=0.265  Sum_probs=112.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.||+|||++     ||||+||+++.+.   .++|+|||++...... ......+||+.|+|   |    |++.+
T Consensus       121 ~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~~  190 (297)
T 3fxz_A          121 VCRECLQALEFLHSNQVIHRDIKSDNILLGMDG---SVKLTDFGFCAQITPEQSKRSTMVGTPYWMA---P----EVVTR  190 (297)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC---CEEECCCTTCEECCSTTCCBCCCCSCGGGCC---H----HHHHC
T ss_pred             HHHHHHHHHHHHHhCCceeCCCCHHHEEECCCC---CEEEeeCCCceecCCcccccCCccCCcCccC---h----hhhcC
Confidence            478999999999998     8999999998863   4999999999876543 33456789999999   9    98887


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..|+.              ++|..||. +.+.......+...+......|..++..+.+||.+||..||.+||     ++
T Consensus       191 ~~~~~~~DiwslG~il~ell~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp-----s~  264 (297)
T 3fxz_A          191 KAYGPKVDIWSLGIMAIEMIEGEPPYL-NENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRG-----SA  264 (297)
T ss_dssp             SCBCTHHHHHHHHHHHHHHHHSSCTTT-TSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHHHHHSCSSTTTSC-----CH
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHhCCCCCCCCccccCHHHHHHHHHHccCChhHCc-----CH
Confidence            77765              89999999 777766666655344345566778999999999999999999999     66


Q ss_pred             hhhhcCCCCCCC
Q psy3184         150 VDIKKHKWFQGF  161 (185)
Q Consensus       150 ~~ll~hp~f~~~  161 (185)
                      .++++||||+..
T Consensus       265 ~ell~h~~~~~~  276 (297)
T 3fxz_A          265 KELLQHQFLKIA  276 (297)
T ss_dssp             HHHTTCGGGGGC
T ss_pred             HHHhhChhhccc
Confidence            999999999754

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.85  E-value=2e-21  Score=155.79  Aligned_cols=124  Identities=15%  Similarity=0.184  Sum_probs=91.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+|||++.+.   ++||+|||+++.....   ....+.+||+.|||   |    |++
T Consensus       137 i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~---~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymA---P----E~l  206 (307)
T 3omv_A          137 IARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGL---TVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMA---P----EVI  206 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTE---EEEECCCSSCBC------------CCCCTTSCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHCCccCCccCHHHEEECCCC---cEEEeeccCceecccCCcceeecccccCCCccC---H----HHh
Confidence            478999999999997     8999999999853   5999999999865432   23456799999999   9    887


Q ss_pred             hcc---Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCcc---CCCCCCCHHHHHHHHHHhhcCcCcc
Q psy3184          82 INV---GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKI---PFPKHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        82 ~~~---~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~---~~p~~~s~~~~~li~~~l~~dp~~R  141 (185)
                      ...   .|+.              ++|..||. +.+.......+...+...+   ..|..+++++.+|+.+||..||.+|
T Consensus       207 ~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~R  285 (307)
T 3omv_A          207 RMQDNNPFSFQSDVYSYGIVLYELMTGELPYS-HINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEER  285 (307)
T ss_dssp             HCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTT-TCCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTS
T ss_pred             hccCCCCCCcHHHhHhHHHHHHHHHHCCCCCC-CCChHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHcCCCHhHC
Confidence            643   3554              89999998 6555444444332443232   3456789999999999999999999


Q ss_pred             cCC
Q psy3184         142 LGY  144 (185)
Q Consensus       142 ~~~  144 (185)
                      |++
T Consensus       286 Ps~  288 (307)
T 3omv_A          286 PLF  288 (307)
T ss_dssp             CCH
T ss_pred             cCH
Confidence            944

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.85  E-value=6e-22  Score=161.68  Aligned_cols=128  Identities=13%  Similarity=0.104  Sum_probs=103.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+|||++.+.   .+||+|||+++.+....   ...+.+||+.|||   |    |++
T Consensus       190 ~~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~---~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymA---P----E~l  259 (353)
T 4ase_A          190 YSFQVAKGMEFLASRKCIHRDLAARNILLSEKN---VVKICDFGLARDIYKDPDYVRKGDARLPLKWMA---P----ETI  259 (353)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG---CEEECCCGGGSCTTTCTTSEEETTEEECGGGCC---H----HHH
T ss_pred             HHHHHHHHHHhHhhCCeecCccCccceeeCCCC---CEEECcchhhhhcccCCCceeeccccccccccC---H----HHH
Confidence            367999999999998     8999999999853   49999999998664332   2345689999999   9    999


Q ss_pred             hccCcce--------------ec-cCCCCCCCCCh-HHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDP-MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~-~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      .+..|+.              ++ |..||. +.+. ..+...+. .+ ..+..|..+++++.+|+.+||..||.+||   
T Consensus       260 ~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~-~~~~~~~~~~~i~-~g-~~~~~p~~~~~~~~~li~~c~~~dP~~RP---  333 (353)
T 4ase_A          260 FDRVYTIQSDVWSFGVLLWEIFSLGASPYP-GVKIDEEFCRRLK-EG-TRMRAPDYTTPEMYQTMLDCWHGEPSQRP---  333 (353)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHTTTSCCSST-TCCCSHHHHHHHH-HT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC---
T ss_pred             hcCCCCCcccEeehHHHHHHHHhCCCCCCC-CCCHHHHHHHHHH-cC-CCCCCCccCCHHHHHHHHHHcCcChhHCc---
Confidence            8887876              55 899998 6554 44444554 33 46788889999999999999999999999   


Q ss_pred             CCChhhhhcC
Q psy3184         146 RGGIVDIKKH  155 (185)
Q Consensus       146 ~~~~~~ll~h  155 (185)
                        ++.+|++|
T Consensus       334 --t~~eil~~  341 (353)
T 4ase_A          334 --TFSELVEH  341 (353)
T ss_dssp             --CHHHHHHH
T ss_pred             --CHHHHHHH
Confidence              55998876

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.85  E-value=1.4e-21  Score=159.73  Aligned_cols=135  Identities=21%  Similarity=0.365  Sum_probs=112.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ...||+.||.|||++     ||||+||+++.+.....++|+|||++............+||+.|+|   |    |++.+.
T Consensus       133 ~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~~  205 (362)
T 2bdw_A          133 CIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLS---P----EVLKKD  205 (362)
T ss_dssp             HHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSCCCSCSCTTTCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcccccCCCCccccC---H----HHHccC
Confidence            467999999999998     8999999998764444599999999987765555566899999999   9    888776


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .|+.              ++|.+||. +.+...++..+. .+  .+.+|    ..+++++++||.+||..||.+||    
T Consensus       206 ~~~~~~DiwslG~il~~ll~g~~Pf~-~~~~~~~~~~i~-~~--~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~----  277 (362)
T 2bdw_A          206 PYSKPVDIWACGVILYILLVGYPPFW-DEDQHRLYAQIK-AG--AYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRI----  277 (362)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HT--CCCCCTTGGGGSCHHHHHHHHHHSCSSGGGSC----
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHH-hC--CCCCCcccccCCCHHHHHHHHHHcCCChhhCc----
Confidence            6665              89999999 888888888887 33  34444    35899999999999999999999    


Q ss_pred             CChhhhhcCCCCCC
Q psy3184         147 GGIVDIKKHKWFQG  160 (185)
Q Consensus       147 ~~~~~ll~hp~f~~  160 (185)
                       ++.++++||||..
T Consensus       278 -t~~e~l~hp~~~~  290 (362)
T 2bdw_A          278 -TADQALKVPWICN  290 (362)
T ss_dssp             -CHHHHTTSHHHHT
T ss_pred             -CHHHHhcCcccCC
Confidence             6699999999964

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.85  E-value=3.4e-21  Score=158.92  Aligned_cols=144  Identities=19%  Similarity=0.254  Sum_probs=112.0

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ...+.||+.||.|||++     ||||+||+++... + .++|+|||.++....+......+||+.|+|   |    |++.
T Consensus       144 ~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~-~-~~kL~DFG~a~~~~~~~~~~~~~~t~~y~a---P----E~~~  214 (394)
T 4e7w_A          144 KLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPS-G-VLKLIDFGSAKILIAGEPNVSYICSRYYRA---P----ELIF  214 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTT-T-EEEECCCTTCEECCTTCCCCSSCSCGGGCC---H----HHHT
T ss_pred             HHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCC-C-cEEEeeCCCcccccCCCCCcccccCcCccC---H----HHHc
Confidence            34578999999999997     8999999998321 3 599999999998766666667889999999   9    8776


Q ss_pred             cc-Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CCC-------------cc------------CCCCC
Q psy3184          83 NV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GID-------------KI------------PFPKH  121 (185)
Q Consensus        83 ~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~-------------~~------------~~p~~  121 (185)
                      +. .|+.              ++|.+||. +.+..+.+..+... +..             ..            .++..
T Consensus       215 ~~~~~~~~~DiwSlG~il~ell~g~~pf~-~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (394)
T 4e7w_A          215 GATNYTTNIDIWSTGCVMAELMQGQPLFP-GESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPR  293 (394)
T ss_dssp             TCSSCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTT
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhcccc
Confidence            53 3544              89999999 77766665555411 000             01            12345


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhh
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGL  166 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~  166 (185)
                      +++++.+||.+||..||.+||     ++.+++.||||+.+.|...
T Consensus       294 ~~~~~~~li~~~L~~dP~~R~-----t~~e~l~hp~f~~~~~~~~  333 (394)
T 4e7w_A          294 TPPDAIDLISRLLEYTPSARL-----TAIEALCHPFFDELRTGEA  333 (394)
T ss_dssp             CCHHHHHHHHHHCCSSGGGSC-----CHHHHHTSGGGSTTTSSCC
T ss_pred             CCHHHHHHHHHHhCCChhhCC-----CHHHHhcChhhhhhccccc
Confidence            899999999999999999999     6699999999999877643

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.85  E-value=8.1e-22  Score=166.09  Aligned_cols=136  Identities=18%  Similarity=0.282  Sum_probs=101.0

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++...........+||+.|+|   |    |++.+
T Consensus       168 ~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~---~~kl~DFG~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~  237 (464)
T 3ttj_A          168 YLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC---TLKILDFGLARTAGTSFMMTPYVVTRYYRA---P----EVILG  237 (464)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS---CEEECCCCCC-----CCCC----CCCTTCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCC---CEEEEEEEeeeecCCCcccCCCcccccccC---H----HHHcC
Confidence            3578999999999997     8999999999863   499999999987766656677899999999   9    98887


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CCC-----------------------ccC----CCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GID-----------------------KIP----FPKH  121 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~-----------------------~~~----~p~~  121 (185)
                      ..|+.              ++|.+||. +.+..+.+..|... |..                       ...    +|..
T Consensus       238 ~~~~~~~DiwSlG~il~ell~g~~pF~-g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (464)
T 3ttj_A          238 MGYKENVDIWSVGCIMGEMVRHKILFP-GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDS  316 (464)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCccc
Confidence            77775              89999999 88877776666521 000                       000    1111


Q ss_pred             -----------CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         122 -----------VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       122 -----------~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                                 .++++++||.+||..||.+||     +++++++||||+.
T Consensus       317 ~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~-----ta~e~L~Hp~~~~  361 (464)
T 3ttj_A          317 LFPADSEHNKLKASQARDLLSKMLVIDPAKRI-----SVDDALQHPYINV  361 (464)
T ss_dssp             GSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSC-----CHHHHHTSTTTGG
T ss_pred             ccccccccccccCHHHHHHHHHHcCCChhhCC-----CHHHHhcChhhhh
Confidence                       167899999999999999999     6699999999973

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.85  E-value=1.1e-21  Score=157.67  Aligned_cols=135  Identities=18%  Similarity=0.304  Sum_probs=113.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ...||+.||+|||++     ||||+||+++.+..+ .++|+|||.+.....+......+||+.|+|   |    |++.+.
T Consensus       107 i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~-~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~~  178 (321)
T 1tki_A          107 YVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSS-TIKIIEFGQARQLKPGDNFRLLFTAPEYYA---P----EVHQHD  178 (321)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCC-CEEECCCTTCEECCTTCEEEEEESCGGGSC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCC-CEEEEECCCCeECCCCCccccccCChhhcC---c----HHhcCC
Confidence            468999999999998     899999999874323 499999999998877666667889999999   9    888766


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .++.              ++|..||. +.+..+....+. .+  .+.++    ..+|.++.+||.+||..||.+||    
T Consensus       179 ~~~~~~DiwslG~il~~ll~g~~pf~-~~~~~~~~~~i~-~~--~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rp----  250 (321)
T 1tki_A          179 VVSTATDMWSLGTLVYVLLSGINPFL-AETNQQIIENIM-NA--EYTFDEEAFKEISIEAMDFVDRLLVKERKSRM----  250 (321)
T ss_dssp             EECHHHHHHHHHHHHHHHHHSSCTTC-CSSHHHHHHHHH-HT--CCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSC----
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCc-CCCHHHHHHHHH-cC--CCCCChhhhccCCHHHHHHHHHHcCCChhHCc----
Confidence            5554              89999999 888888888887 33  44444    46899999999999999999999    


Q ss_pred             CChhhhhcCCCCCCC
Q psy3184         147 GGIVDIKKHKWFQGF  161 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~  161 (185)
                       ++.++++||||+..
T Consensus       251 -t~~e~l~hp~~~~~  264 (321)
T 1tki_A          251 -TASEALQHPWLKQK  264 (321)
T ss_dssp             -CHHHHHHSHHHHSC
T ss_pred             -CHHHHhcChhhccC
Confidence             66999999999753

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.85  E-value=1.9e-22  Score=163.47  Aligned_cols=132  Identities=21%  Similarity=0.369  Sum_probs=110.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ...||+.||+|||+.     ||||+||+++.+.   +++|+|||++.....+......+||+.|+|   |    |++.+.
T Consensus       113 i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~---~~kl~DFG~s~~~~~~~~~~~~~gt~~y~a---P----E~~~~~  182 (336)
T 3h4j_B          113 FFQQIICAIEYCHRHKIVHRDLKPENLLLDDNL---NVKIADFGLSNIMTDGNFLKTSCGSPNYAA---P----EVINGK  182 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTC---CEEECCSSCTBTTTTSBTTCCCTTSTTTSC---G----GGSCCS
T ss_pred             HHHHHHHHHHHHHHCCeEecCCchhhEEEcCCC---CEEEEEeccceeccCCcccccccCCcCcCC---H----HHHcCC
Confidence            468999999999997     8999999999853   499999999987766666677899999999   9    887766


Q ss_pred             Ccce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .|..               ++|..||. +.+...+...+.   .....+|..+|+++.+||++||..||.+||     ++
T Consensus       183 ~~~~~~~DiwslG~il~~ll~g~~Pf~-~~~~~~~~~~i~---~~~~~~p~~~s~~~~~li~~~L~~dP~~Rp-----t~  253 (336)
T 3h4j_B          183 LYAGPEVDVWSCGIVLYVMLVGRLPFD-DEFIPNLFKKVN---SCVYVMPDFLSPGAQSLIRRMIVADPMQRI-----TI  253 (336)
T ss_dssp             GGGCHHHHHHHHHHHHHHHHHSSCSSB-CSSSTTCBCCCC---SSCCCCCTTSCHHHHHHHHTTSCSSGGGSC-----CH
T ss_pred             CCCCCccchhHHHHHHHHHHhCCCCCC-CccHHHHHHHHH---cCCCCCcccCCHHHHHHHHHHcCCChhHCc-----CH
Confidence            5532               89999998 666555554444   236678888999999999999999999999     66


Q ss_pred             hhhhcCCCCCC
Q psy3184         150 VDIKKHKWFQG  160 (185)
Q Consensus       150 ~~ll~hp~f~~  160 (185)
                      +++++||||+.
T Consensus       254 ~eil~hp~~~~  264 (336)
T 3h4j_B          254 QEIRRDPWFNV  264 (336)
T ss_dssp             HHHTTCHHHHT
T ss_pred             HHHHhChhhcc
Confidence            99999999964

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.85  E-value=4.8e-21  Score=157.99  Aligned_cols=137  Identities=20%  Similarity=0.331  Sum_probs=113.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||++     ||||+||+++.+..+ .++|+|||+++...........+||+.|+|   |    |++...
T Consensus       154 i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~-~vkL~DFG~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~~  225 (387)
T 1kob_A          154 YMRQACEGLKHMHEHSIVHLDIKPENIMCETKKAS-SVKIIDFGLATKLNPDEIVKVTTATAEFAA---P----EIVDRE  225 (387)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCC-CEEECCCTTCEECCTTSCEEEECSSGGGCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHhCCeeecccchHHeEEecCCCC-ceEEEecccceecCCCcceeeeccCCCccC---c----hhccCC
Confidence            478999999999997     899999999864333 499999999998766655666789999999   9    888776


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .|+.              ++|..||. +.+..+....+. .+  ...++    ..+++++++||.+||..||.+||    
T Consensus       226 ~~~~~~DiwSlG~il~elltg~~Pf~-~~~~~~~~~~i~-~~--~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp----  297 (387)
T 1kob_A          226 PVGFYTDMWAIGVLGYVLLSGLSPFA-GEDDLETLQNVK-RC--DWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRL----  297 (387)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHSCCSSC-CSSHHHHHHHHH-HC--CCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSC----
T ss_pred             CCCCcccEeeHhHHHHHHHhCCCCCC-CCCHHHHHHHHH-hC--CCCCCccccccCCHHHHHHHHHHcCCChhHCc----
Confidence            6654              89999999 888888887777 22  23232    46899999999999999999999    


Q ss_pred             CChhhhhcCCCCCCCCh
Q psy3184         147 GGIVDIKKHKWFQGFDW  163 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~~~  163 (185)
                       ++.++++||||++..+
T Consensus       298 -t~~ell~hp~~~~~~~  313 (387)
T 1kob_A          298 -TVHDALEHPWLKGDHS  313 (387)
T ss_dssp             -CHHHHHTSTTTSSCCT
T ss_pred             -CHHHHhhCccccCCcc
Confidence             6699999999987543

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.85  E-value=1.4e-21  Score=156.22  Aligned_cols=125  Identities=12%  Similarity=0.109  Sum_probs=104.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+|||++.+.   .+||+|||+++......   .....+||+.|||   |    |++
T Consensus       133 i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~---~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymA---P----E~~  202 (299)
T 4asz_A          133 IAQQIAAGMVYLASQHFVHRDLATRNCLVGENL---LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMP---P----ESI  202 (299)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG---CEEECCCSCHHHHTGGGCEEETTTEEECGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCcccCccCHhhEEECCCC---cEEECCcccceecCCCCceeecCceecChhhcC---H----HHH
Confidence            478999999999998     8999999999863   49999999998654332   2234579999999   9    999


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....|+.              ++ |+.||. +.+..++...+. .+ ..+..|..+|+++.+|+.+||..||.+||    
T Consensus       203 ~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~-~~~~~~~~~~i~-~~-~~~~~p~~~~~~~~~li~~cl~~dP~~RP----  275 (299)
T 4asz_A          203 MYRKFTTESDVWSLGVVLWEIFTYGKQPWY-QLSNNEVIECIT-QG-RVLQRPRTCPQEVYELMLGCWQREPHMRK----  275 (299)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTTCCTTT-TSCHHHHHHHHH-HT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             cCCCCCchhhHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCccchHHHHHHHHHHcCCChhHCc----
Confidence            8877776              56 899999 888889988888 33 35678889999999999999999999999    


Q ss_pred             CChhhh
Q psy3184         147 GGIVDI  152 (185)
Q Consensus       147 ~~~~~l  152 (185)
                       ++.++
T Consensus       276 -s~~~i  280 (299)
T 4asz_A          276 -NIKGI  280 (299)
T ss_dssp             -CHHHH
T ss_pred             -CHHHH
Confidence             55887

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.85  E-value=6.1e-21  Score=160.04  Aligned_cols=135  Identities=23%  Similarity=0.374  Sum_probs=111.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...||+.||.|||++     ||||+||+++.+.....++|+|||++...... ......+||+.|+|   |    |++.+
T Consensus       115 i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~A---P----E~l~~  187 (444)
T 3soa_A          115 CIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLS---P----EVLRK  187 (444)
T ss_dssp             HHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCcccCC---H----HHhcC
Confidence            468999999999998     89999999987543345999999999766543 23456789999999   9    88877


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      ..|+.              ++|.+||. +.+...++..+. .+  .+.+|    ..+|+++++||.+||..||.+||   
T Consensus       188 ~~~~~~~DIwSlGvilyell~G~~Pf~-~~~~~~~~~~i~-~~--~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp---  260 (444)
T 3soa_A          188 DPYGKPVDLWACGVILYILLVGYPPFW-DEDQHRLYQQIK-AG--AYDFPSPEWDTVTPEAKDLINKMLTINPSKRI---  260 (444)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHH-HT--CCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSC---
T ss_pred             CCCCCccccHHHHHHHHHHHhCCCCCC-CccHHHHHHHHH-hC--CCCCCccccccCCHHHHHHHHHHcCCChhHCC---
Confidence            66665              89999999 888888888888 34  33333    36899999999999999999999   


Q ss_pred             CCChhhhhcCCCCCC
Q psy3184         146 RGGIVDIKKHKWFQG  160 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~  160 (185)
                        ++.++++||||+.
T Consensus       261 --ta~e~L~hp~~~~  273 (444)
T 3soa_A          261 --TAAEALKHPWISH  273 (444)
T ss_dssp             --CHHHHHHSCTTHH
T ss_pred             --CHHHHhcCccccC
Confidence              6699999999953

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.85  E-value=7.7e-21  Score=152.19  Aligned_cols=143  Identities=20%  Similarity=0.291  Sum_probs=118.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCC-CeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAG-NDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~-~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||+.     ||||+||+++.+... ..++|+|||.+.............||+.|+|   |    |++..
T Consensus       120 i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~a---P----E~~~~  192 (321)
T 2a2a_A          120 FIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVA---P----EIVNY  192 (321)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCCCCCCCSCGGGCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCccceecCccccccccCCCCCccC---c----ccccC
Confidence            478999999999997     899999999875321 1499999999988766655667789999999   9    88876


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      ..++.              ++|..||. +.+..+....+. .+  ...++    ..++.++.+||.+||..||.+||   
T Consensus       193 ~~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~i~-~~--~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp---  265 (321)
T 2a2a_A          193 EPLGLEADMWSIGVITYILLSGASPFL-GDTKQETLANIT-SV--SYDFDEEFFSHTSELAKDFIRKLLVKETRKRL---  265 (321)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSCCSSC-CSSHHHHHHHHH-TT--CCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSC---
T ss_pred             CCCCCccccHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHH-hc--ccccChhhhcccCHHHHHHHHHHcCCChhhCc---
Confidence            66554              89999999 888888888877 22  34444    56899999999999999999999   


Q ss_pred             CCChhhhhcCCCCCCCChhhhhc
Q psy3184         146 RGGIVDIKKHKWFQGFDWDGLRN  168 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~~~~~~~~~  168 (185)
                        ++.++++||||++++|+....
T Consensus       266 --s~~e~l~hp~~~~~~~~~~~~  286 (321)
T 2a2a_A          266 --TIQEALRHPWITPVDNQQAMV  286 (321)
T ss_dssp             --CHHHHHHSTTTSCSSHHHHHH
T ss_pred             --CHHHHhcCccccCCCcccccc
Confidence              669999999999999886543

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.85  E-value=3.1e-21  Score=163.12  Aligned_cols=133  Identities=23%  Similarity=0.366  Sum_probs=115.4

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ....||+.||+|||++     ||||+||+++.+.   +++|+|||++.....+....+.+||+.|+|   |    |++.+
T Consensus       120 ~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~---~vkL~DFG~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~  189 (476)
T 2y94_A          120 RLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHM---NAKIADFGLSNMMSDGEFLRTSCGSPNYAA---P----EVISG  189 (476)
T ss_dssp             HHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTC---CEEECCCSSCEECCTTCCBCCCCSCSTTCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHHCCCCcccccHHHEEEecCC---CeEEEeccchhhccccccccccCCCcCeEC---h----hhccC
Confidence            3478999999999997     8999999998853   499999999998776666677899999999   9    88877


Q ss_pred             cCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          84 VGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        84 ~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ..|..               ++|..||. +.+...++..+. .+  .+..|..+++++.+||++||..||.+||     +
T Consensus       190 ~~~~~~~~DiwSlGvil~elltG~~Pf~-~~~~~~~~~~i~-~~--~~~~p~~~s~~~~~Li~~~L~~dP~~Rp-----t  260 (476)
T 2y94_A          190 RLYAGPEVDIWSSGVILYALLCGTLPFD-DDHVPTLFKKIC-DG--IFYTPQYLNPSVISLLKHMLQVDPMKRA-----T  260 (476)
T ss_dssp             CCBCSHHHHHHHHHHHHHHHHHSSCSSC-CSSSHHHHHHHH-TT--CCCCCTTCCHHHHHHHHHHTCSSTTTSC-----C
T ss_pred             CCCCCCcceehhhHHHHHHHhhCCCCCC-CCCHHHHHHHHh-cC--CcCCCccCCHHHHHHHHHHcCCCchhCc-----C
Confidence            65532               89999999 888888888888 33  6778888999999999999999999999     6


Q ss_pred             hhhhhcCCCCCC
Q psy3184         149 IVDIKKHKWFQG  160 (185)
Q Consensus       149 ~~~ll~hp~f~~  160 (185)
                      +.++++||||+.
T Consensus       261 ~~eil~hp~~~~  272 (476)
T 2y94_A          261 IKDIREHEWFKQ  272 (476)
T ss_dssp             HHHHHTCHHHHT
T ss_pred             HHHHHhCHHhhh
Confidence            699999999964

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.85  E-value=9.4e-22  Score=160.84  Aligned_cols=154  Identities=18%  Similarity=0.264  Sum_probs=105.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++...........+||+.|+|   |    |++.+.
T Consensus       132 i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~---~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~~  201 (371)
T 2xrw_A          132 LLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC---TLKILDFGLARTAGTSFMMTPYVVTRYYRA---P----EVILGM  201 (371)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTS---CEEECCCCC----------------CTTCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHHCCeecccCCHHHEEEcCCC---CEEEEEeecccccccccccCCceecCCccC---H----HHhcCC
Confidence            467999999999998     8999999999853   499999999987765545556789999999   9    888776


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCc--------------------cC-------------
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK--------------------IP-------------  117 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~--------------------~~-------------  117 (185)
                      .|+.              ++|..||. +.+..+.+..+. .....                    +.             
T Consensus       202 ~~~~~~DiwslG~il~el~~g~~pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (371)
T 2xrw_A          202 GYKENVDIWSVGCIMGEMIKGGVLFP-GTDHIDQWNKVI-EQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDV  279 (371)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-C-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGG
T ss_pred             CCCchHhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHH-HHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccc
Confidence            6664              89999999 888777776665 21100                    00             


Q ss_pred             -CCC------CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCC
Q psy3184         118 -FPK------HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASIL  182 (185)
Q Consensus       118 -~p~------~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~  182 (185)
                       +|.      ..+.++++||.+||..||.+||     +++++++||||+.  |........++|.+|.....
T Consensus       280 ~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~-----t~~e~l~hp~~~~--~~~~~~~~~~~~~~~~~~~~  344 (371)
T 2xrw_A          280 LFPADSEHNKLKASQARDLLSKMLVIDASKRI-----SVDEALQHPYINV--WYDPSEAEAPPPKIPDKQLD  344 (371)
T ss_dssp             GSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSC-----CHHHHHHSHHHHT--TCCHHHHTCCCCCCCTTTTC
T ss_pred             cCcccccccccccHHHHHHHHHHCcCChhhCC-----CHHHHhCCcchhh--hcCccccCCCCCCCCChhhc
Confidence             110      1257899999999999999999     6699999999974  44433444567777665543

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.84  E-value=6.8e-21  Score=151.45  Aligned_cols=137  Identities=13%  Similarity=0.180  Sum_probs=107.2

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++...........+||+.|+|   |    |++..
T Consensus       124 ~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~---~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~  193 (308)
T 3g33_A          124 DLMRQFLRGLDFLHANCIVHRDLKPENILVTSGG---TVKLADFGLARIYSYQMALTPVVVTLWYRA---P----EVLLQ  193 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTS---CEEECSCSCTTTSTTCCCSGGGGCCCSSCC---H----HHHHT
T ss_pred             HHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCC---CEEEeeCccccccCCCcccCCccccccccC---c----hHHcC
Confidence            3578999999999998     8899999998753   499999999987665555667899999999   9    88877


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCC--CccC----------------------CCCCCCHH
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI--DKIP----------------------FPKHVTRT  125 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~--~~~~----------------------~p~~~s~~  125 (185)
                      ..|+.              ++|.+||. +.+.......+.....  ....                      ....++.+
T Consensus       194 ~~~~~~~DiwslG~il~~l~~g~~pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (308)
T 3g33_A          194 STYATPVDMWSVGCIFAEMFRRKPLFC-GNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEES  272 (308)
T ss_dssp             SCCCSTHHHHHHHHHHHHTTTSSCSCC-CSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHH
T ss_pred             CCCCchHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHH
Confidence            66664              89999999 8877777666652100  0000                      11357899


Q ss_pred             HHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         126 AQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       126 ~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      +.+||.+||..||.+||     ++.++++||||+..
T Consensus       273 ~~~li~~~L~~dP~~R~-----t~~e~l~h~~~~~~  303 (308)
T 3g33_A          273 GAQLLLEMLTFNPHKRI-----SAFRALQHSYLHKD  303 (308)
T ss_dssp             HHHHHHHHTCSSTTTSC-----CHHHHHTSTTC---
T ss_pred             HHHHHHHHhcCCCccCC-----CHHHHhcCccccCC
Confidence            99999999999999999     66999999999753

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.84  E-value=2e-21  Score=159.45  Aligned_cols=139  Identities=19%  Similarity=0.287  Sum_probs=114.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||+.     ||||+||++..+..+ .++|+|||+++...........+||+.|+|   |    |++...
T Consensus       192 i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~-~~kl~DFG~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~~  263 (373)
T 2x4f_A          192 FMKQICEGIRHMHQMYILHLDLKPENILCVNRDAK-QIKIIDFGLARRYKPREKLKVNFGTPEFLA---P----EVVNYD  263 (373)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTT-EEEECCCSSCEECCTTCBCCCCCSSCTTCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCC-cEEEEeCCCceecCCccccccccCCCcEeC---h----hhccCC
Confidence            367999999999998     899999999643333 599999999998876666667789999999   9    887766


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .++.              ++|..||. +.+..+.+..+.. .  .+.++    ..+++++++||.+||..||.+||    
T Consensus       264 ~~~~~~DiwslG~il~elltg~~pf~-~~~~~~~~~~i~~-~--~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rp----  335 (373)
T 2x4f_A          264 FVSFPTDMWSVGVIAYMLLSGLSPFL-GDNDAETLNNILA-C--RWDLEDEEFQDISEEAKEFISKLLIKEKSWRI----  335 (373)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHSSCTTC-CSSHHHHHHHHHH-T--CCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSC----
T ss_pred             CCCcHHhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHh-c--cCCCChhhhccCCHHHHHHHHHHcCCChhhCC----
Confidence            5554              89999999 8888888888872 2  33333    46899999999999999999999    


Q ss_pred             CChhhhhcCCCCCCCChhh
Q psy3184         147 GGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~~~~~  165 (185)
                       ++.++++||||++..+..
T Consensus       336 -s~~e~l~hp~~~~~~~~~  353 (373)
T 2x4f_A          336 -SASEALKHPWLSDHKLHS  353 (373)
T ss_dssp             -CHHHHHHSHHHHCHHHHH
T ss_pred             -CHHHHhcCcCcCCCchhh
Confidence             669999999999877654

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.84  E-value=5.7e-21  Score=152.66  Aligned_cols=139  Identities=16%  Similarity=0.180  Sum_probs=104.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.++..... ......+||+.|+|   |    |++.+
T Consensus       124 ~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~a---P----E~~~~  193 (311)
T 3niz_A          124 YLYQLLRGVAHCHQHRILHRDLKPQNLLINSDG---ALKLADFGLARAFGIPVRSYTHEVVTLWYRA---P----DVLMG  193 (311)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC---CEEECCCTTCEETTSCCC---CCCCCCTTCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHCCcccCCCchHhEEECCCC---CEEEccCcCceecCCCcccccCCcccCCcCC---H----HHhcC
Confidence            478999999999998     8999999998863   4999999999876533 33445689999999   9    88765


Q ss_pred             -cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CC-Ccc-------------------------CCCCC
Q psy3184          84 -VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI-DKI-------------------------PFPKH  121 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~-~~~-------------------------~~p~~  121 (185)
                       ..|+.              ++|..||. +.+..+....+... +. ...                         .....
T Consensus       194 ~~~~~~~~DiwslG~il~~ll~g~~pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (311)
T 3niz_A          194 SKKYSTSVDIWSIGCIFAEMITGKPLFP-GVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPG  272 (311)
T ss_dssp             CCSCCTHHHHHHHHHHHHHHHHSSCSCC-CSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTT
T ss_pred             CCCCCchHHhHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcc
Confidence             33443              89999998 66555554444310 00 000                         01134


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                      ++.++.+||.+||..||.+||     ++.++++||||++++++
T Consensus       273 ~~~~~~~li~~~L~~dP~~Rp-----t~~ell~hp~f~~~~~~  310 (311)
T 3niz_A          273 FCQEGIDLLSNMLCFDPNKRI-----SARDAMNHPYFKDLDPQ  310 (311)
T ss_dssp             CCHHHHHHHHHHSCSCTTTSC-----CHHHHHTSGGGTTSCTT
T ss_pred             cCHHHHHHHHHHcCCChhHCC-----CHHHHhcCcccccCCcc
Confidence            789999999999999999999     66999999999988764

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.84  E-value=5.8e-21  Score=158.81  Aligned_cols=142  Identities=18%  Similarity=0.241  Sum_probs=109.7

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||.|||++     ||||+||+++.+.  ..++|+|||+++.+..+......+||+.|+|   |    |++.+
T Consensus       160 ~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~--~~~kl~DFG~a~~~~~~~~~~~~~~t~~y~a---P----E~~~~  230 (420)
T 1j1b_A          160 LYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDT--AVLKLCDFGSAKQLVRGEPNVSYICSRYYRA---P----ELIFG  230 (420)
T ss_dssp             HHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTT--TEEEECCCTTCEECCTTCCCCSCCSCTTSCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHHCCccccCCChhhEEEeCCC--CeEEeccchhhhhcccCCCceeeeeCCCcCC---H----HHHcC
Confidence            3478999999999997     8999999998642  2489999999998766655667889999999   9    87765


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CC-------------CccC------------CCCCC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI-------------DKIP------------FPKHV  122 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~-------------~~~~------------~p~~~  122 (185)
                      . .|+.              ++|.+||. +.+..+.+..+... |.             ..+.            ++..+
T Consensus       231 ~~~~~~~~DiwSlG~il~ell~G~~pf~-~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  309 (420)
T 1j1b_A          231 ATDYTSSIDVWSAGCVLAELLLGQPIFP-GDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRT  309 (420)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTS
T ss_pred             CCCCCchhhhHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCC
Confidence            3 4554              89999999 77766555554411 00             1112            23457


Q ss_pred             CHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhh
Q psy3184         123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       123 s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                      ++++.+||.+||..||.+||     ++.+++.||||+.+.+..
T Consensus       310 ~~~~~~Li~~~L~~dP~~R~-----t~~e~l~hp~f~~~~~~~  347 (420)
T 1j1b_A          310 PPEAIALCSRLLEYTPTARL-----TPLEACAHSFFDELRDPN  347 (420)
T ss_dssp             CHHHHHHHHHHSCSSGGGSC-----CHHHHHTSGGGGGGGCTT
T ss_pred             CHHHHHHHHHhccCChhHCC-----CHHHHhCCHhhccccccc
Confidence            89999999999999999999     669999999998765543

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.84  E-value=1.5e-20  Score=147.40  Aligned_cols=140  Identities=21%  Similarity=0.341  Sum_probs=115.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||++     ||||+||+++.+.....++|+|||.+.............||+.|+|   |    |++.+.
T Consensus       110 ~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  182 (284)
T 3kk8_A          110 CIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLS---P----EVLKKD  182 (284)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBCCCSCSCGGGCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccccCCCCCcCCcC---c----hhhcCC
Confidence            468999999999998     8999999998765444599999999987766655667889999999   9    888776


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .++.              ++|..||. +.+.......+. .+  ...+|    ..+++++.+||.+||..||.+||    
T Consensus       183 ~~~~~~Di~slG~~l~~l~~g~~pf~-~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp----  254 (284)
T 3kk8_A          183 PYSKPVDIWACGVILYILLVGYPPFW-DEDQHRLYAQIK-AG--AYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRI----  254 (284)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HT--CCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSC----
T ss_pred             CCCcccchHHHHHHHHHHHHCCCCCC-CCchhHHHHHHH-hc--cccCCchhhcccCHHHHHHHHHHcccChhhCC----
Confidence            6654              89999999 888888887777 33  33333    46899999999999999999999    


Q ss_pred             CChhhhhcCCCCCCCChhh
Q psy3184         147 GGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~~~~~  165 (185)
                       ++.++++||||++..+..
T Consensus       255 -s~~~~l~h~~~~~~~~~~  272 (284)
T 3kk8_A          255 -TADQALKVPWICNRERVA  272 (284)
T ss_dssp             -CHHHHTTSHHHHSCCCGG
T ss_pred             -CHHHHhcCccccCChhHH
Confidence             669999999998765553

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.83  E-value=1.2e-20  Score=148.37  Aligned_cols=144  Identities=19%  Similarity=0.326  Sum_probs=114.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||++     ||+|+||+++.+.   .++|+|||.+...... .....+|++.|+|   |    |++.+.
T Consensus       119 ~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~---~~kl~Dfg~~~~~~~~-~~~~~~~~~~y~a---P----E~~~~~  187 (284)
T 2vgo_A          119 FMEELADALHYCHERKVIHRDIKPENLLMGYKG---ELKIADFGWSVHAPSL-RRRTMCGTLDYLP---P----EMIEGK  187 (284)
T ss_dssp             HHHHHHHHHHHHHTTTEECCCCSGGGEEECTTC---CEEECCCTTCEECSSS-CBCCCCSCGGGCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHHCCceecCCCHHHEEEcCCC---CEEEecccccccCccc-ccccccCCCCcCC---H----HHhccC
Confidence            467999999999997     8999999998753   4999999998765432 3345789999999   9    888766


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|..||. ..+.......+.   .....+|..++.++++||.+||..||.+||     ++.
T Consensus       188 ~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~  258 (284)
T 2vgo_A          188 THDEKVDLWCAGVLCYEFLVGMPPFD-SPSHTETHRRIV---NVDLKFPPFLSDGSKDLISKLLRYHPPQRL-----PLK  258 (284)
T ss_dssp             CBCTTHHHHHHHHHHHHHHHSSCTTC-CSSHHHHHHHHH---TTCCCCCTTSCHHHHHHHHHHSCSSGGGSC-----CHH
T ss_pred             CCCcccchhhHHHHHHHHHHCCCCCC-CCCHhHHHHHHh---ccccCCCCcCCHHHHHHHHHHhhcCHhhCC-----CHH
Confidence            5554              89999998 878777777777   346778888999999999999999999999     669


Q ss_pred             hhhcCCCCCCCChhhhhcccCCCCccCCC
Q psy3184         151 DIKKHKWFQGFDWDGLRNQTLTPPIIPVA  179 (185)
Q Consensus       151 ~ll~hp~f~~~~~~~~~~~~~~~p~~p~~  179 (185)
                      ++++||||+..      ...+.||..+..
T Consensus       259 ~ll~h~~~~~~------~~~~~p~~~~~~  281 (284)
T 2vgo_A          259 GVMEHPWVKAN------SRRVLPPVYQST  281 (284)
T ss_dssp             HHHTCHHHHHH------CCCCCCCCC---
T ss_pred             HHhhCHHHHhh------ccccCCCccccC
Confidence            99999999632      334555554443

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.83  E-value=1.1e-20  Score=154.22  Aligned_cols=134  Identities=22%  Similarity=0.308  Sum_probs=95.3

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||.|||++     ||||+||+++.+..+ .++|+|||+++...........+||+.|+|   |    |++.+
T Consensus       120 ~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~-~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~  191 (361)
T 3uc3_A          120 FFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAP-RLKICDFGYSKSSVLHSQPKSTVGTPAYIA---P----EVLLR  191 (361)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSC-CEEECCCCCC---------------CTTSC---H----HHHHC
T ss_pred             HHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCc-eEEEeecCccccccccCCCCCCcCCCCcCC---h----hhhcC
Confidence            3478999999999998     889999999876433 399999999986555555566789999999   9    88876


Q ss_pred             cCcce---------------eccCCCCCCCCC----hHHHHHHHHhcCCCccCCCC--CCCHHHHHHHHHHhhcCcCccc
Q psy3184          84 VGIDN---------------IFSRPPFCVMND----PMQTYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        84 ~~~~~---------------l~g~~Pf~~~~~----~~~~~~~i~~~~~~~~~~p~--~~s~~~~~li~~~l~~dp~~R~  142 (185)
                      ..|+.               ++|..||. +.+    .......+.   .....+|.  .+|+++.+||.+||..||.+||
T Consensus       192 ~~~~~~~~DiwslG~il~ell~g~~Pf~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  267 (361)
T 3uc3_A          192 QEYDGKIADVWSCGVTLYVMLVGAYPFE-DPEEPRDYRKTIQRIL---SVKYSIPDDIRISPECCHLISRIFVADPATRI  267 (361)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHSSCSCC-----CCCHHHHHHHHH---TTCCCCCTTSCCCHHHHHHHHHHSCSCTTTSC
T ss_pred             CCCCCCeeeeehhHHHHHHHHhCCCCCC-CCccHHHHHHHHHHHh---cCCCCCCCcCCCCHHHHHHHHHHccCChhHCc
Confidence            65543               89999998 432    345555565   23445553  6899999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCC
Q psy3184         143 GYQRGGIVDIKKHKWFQ  159 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~  159 (185)
                           ++.++++||||.
T Consensus       268 -----s~~ell~hp~f~  279 (361)
T 3uc3_A          268 -----SIPEIKTHSWFL  279 (361)
T ss_dssp             -----CHHHHHTSHHHH
T ss_pred             -----CHHHHHhCcchh
Confidence                 669999999994

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.83  E-value=1.8e-20  Score=157.07  Aligned_cols=148  Identities=16%  Similarity=0.176  Sum_probs=100.5

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--------------------------
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--------------------------   56 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--------------------------   56 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.....                          
T Consensus       159 ~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~---~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (458)
T 3rp9_A          159 KTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDC---SVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKN  235 (458)
T ss_dssp             HHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTC---CEEECCCTTCBCTTSCTTCCCCCC------------------
T ss_pred             HHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCC---CEeecccccchhccCccccccccccCcccccccccccccccc
Confidence            34578999999999998     8999999999863   4999999999865421                          


Q ss_pred             --cccccccCCccccccCCCcccccchh-ccCcce--------------ec-----------cCCCCCCCCCh-------
Q psy3184          57 --KILRLLSGRPPFCVMNDPMQTYNMII-NVGIDN--------------IF-----------SRPPFCVMNDP-------  101 (185)
Q Consensus        57 --~~~~~~~gt~~y~a~~~P~~~~E~~~-~~~~~~--------------l~-----------g~~Pf~~~~~~-------  101 (185)
                        ......+||+.|+|   |    |++. ...|+.              ++           |.++|. +.+.       
T Consensus       236 ~~~~~~~~~gt~~Y~a---P----E~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~-g~~~~~~~~~~  307 (458)
T 3rp9_A          236 LKRQLTGHVVTRWYRA---P----ELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFP-GSSCFPLSPDQ  307 (458)
T ss_dssp             ---------CCCTTCC---H----HHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC------------
T ss_pred             ccccccCCcccccccC---h----HHhhCCCCCCcHhHHHHHHHHHHHHHHhccccccccccccccCC-CCccccccccc
Confidence              12345689999999   9    8764 344554              44           777786 5431       


Q ss_pred             -------------HHHHHHHHhc-CCCc---------------------------cCCCCCCCHHHHHHHHHHhhcCcCc
Q psy3184         102 -------------MQTYNMIINV-GIDK---------------------------IPFPKHVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus       102 -------------~~~~~~i~~~-~~~~---------------------------~~~p~~~s~~~~~li~~~l~~dp~~  140 (185)
                                   ...+..|... |...                           ......+++++.+||++||..||.+
T Consensus       308 ~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~  387 (458)
T 3rp9_A          308 KAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNK  387 (458)
T ss_dssp             ---------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTTSCHHHHHHHHHHSCSSTTT
T ss_pred             cccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCCCCHHHHHHHHHHhccCccc
Confidence                         1111211100 0000                           0011246999999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCCChhhhhcccC
Q psy3184         141 RLGYQRGGIVDIKKHKWFQGFDWDGLRNQTL  171 (185)
Q Consensus       141 R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~  171 (185)
                      ||     +++++++||||++++|........
T Consensus       388 R~-----t~~e~L~Hp~f~~~~~~~~e~~~~  413 (458)
T 3rp9_A          388 RI-----TINECLAHPFFKEVRIAEVETNAT  413 (458)
T ss_dssp             SC-----CHHHHHHSGGGTTTCCGGGCCCCS
T ss_pred             cC-----CHHHHhcCHhhhhcCCCccCCCCC
Confidence            99     669999999999999998765543

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.83  E-value=1.9e-20  Score=152.10  Aligned_cols=141  Identities=18%  Similarity=0.345  Sum_probs=97.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||+.     ||||+||+++.......++|+|||.++...........+||+.|+|   |    |++.+.
T Consensus       153 i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~~  225 (349)
T 2w4o_A          153 AVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCA---P----EILRGC  225 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC----------------CGGGSC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCcccccccccCCCCccC---H----HHhcCC
Confidence            468999999999997     8999999998622223499999999987765555567789999999   9    888776


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCcc--CCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKI--PFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~--~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      .|+.              ++|..||.........+..+. .+....  .+...++.++.+||.+||..||.+||     +
T Consensus       226 ~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----t  299 (349)
T 2w4o_A          226 AYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRIL-NCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRL-----T  299 (349)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHH-TTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSC-----C
T ss_pred             CCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHH-hCCCccCCchhhhCCHHHHHHHHHHccCChhhCc-----C
Confidence            6654              899999983334444666776 321111  12246899999999999999999999     6


Q ss_pred             hhhhhcCCCCCCCCh
Q psy3184         149 IVDIKKHKWFQGFDW  163 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~  163 (185)
                      +.++++||||.+..+
T Consensus       300 ~~e~l~hp~~~~~~~  314 (349)
T 2w4o_A          300 TFQALQHPWVTGKAA  314 (349)
T ss_dssp             HHHHHHSTTTTSTTC
T ss_pred             HHHHhcCcccCCCcc
Confidence            699999999987654

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.83  E-value=6.1e-21  Score=161.17  Aligned_cols=137  Identities=18%  Similarity=0.331  Sum_probs=109.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||++     ||||+||+++.......++|+|||+++...........+||+.|+|   |    |++.+.
T Consensus       126 i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~~  198 (486)
T 3mwu_A          126 IIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIA---P----EVLRGT  198 (486)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC----CCTTGGGGCC---G----GGGGSC
T ss_pred             HHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCccCCCcCCCCCCC---H----HHhCCC
Confidence            478999999999998     8899999997643334599999999986665555667789999999   9    877643


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                       |+.              ++|.+||. +.+..+....+. .+...+..|  ..+|+++++||.+||..||.+||     +
T Consensus       199 -~~~~~DiwslG~il~~ll~g~~pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~-----t  270 (486)
T 3mwu_A          199 -YDEKCDVWSAGVILYILLSGTPPFY-GKNEYDILKRVE-TGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRI-----T  270 (486)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HTCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSC-----C
T ss_pred             -CCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHH-hCCCCCCCcccCCCCHHHHHHHHHHcCCChhhCc-----C
Confidence             543              89999999 888888888887 442233333  46899999999999999999999     6


Q ss_pred             hhhhhcCCCCCCC
Q psy3184         149 IVDIKKHKWFQGF  161 (185)
Q Consensus       149 ~~~ll~hp~f~~~  161 (185)
                      +.++++||||+..
T Consensus       271 ~~~~l~hp~~~~~  283 (486)
T 3mwu_A          271 ATQCLEHPWIQKY  283 (486)
T ss_dssp             HHHHHHCHHHHHT
T ss_pred             HHHHhcCHhhccC
Confidence            6999999999754

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.83  E-value=2.3e-21  Score=163.48  Aligned_cols=140  Identities=19%  Similarity=0.326  Sum_probs=113.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||++     ||||+||+++.......++|+|||++............+||+.|+|   |    |++.+ 
T Consensus       131 i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~-  202 (484)
T 3nyv_A          131 IIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIA---P----EVLHG-  202 (484)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCC---H----HHHHT-
T ss_pred             HHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccccccCCCCccccC---c----eeecC-
Confidence            478999999999998     8899999997533333599999999987766666667889999999   9    87765 


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      .|+.              ++|.+||. +.+..+....+. .+...+..|  ..+|+++++||.+||..||.+||     +
T Consensus       203 ~~~~~~DiwslG~il~~ll~g~~pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~-----s  275 (484)
T 3nyv_A          203 TYDEKCDVWSTGVILYILLSGCPPFN-GANEYDILKKVE-KGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRI-----S  275 (484)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGSC-----C
T ss_pred             CCCCcceeHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHH-cCCCCCCCcccccCCHHHHHHHHHHCCCChhHCc-----C
Confidence            3554              89999999 888888888888 442233333  46899999999999999999999     6


Q ss_pred             hhhhhcCCCCCCCChh
Q psy3184         149 IVDIKKHKWFQGFDWD  164 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~  164 (185)
                      +.++++||||+...+.
T Consensus       276 ~~e~l~h~~~~~~~~~  291 (484)
T 3nyv_A          276 ARDALDHEWIQTYTKE  291 (484)
T ss_dssp             HHHHHTSHHHHHHTC-
T ss_pred             HHHHhhChhhcccccc
Confidence            6999999999765443

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.83  E-value=7.4e-21  Score=157.31  Aligned_cols=136  Identities=21%  Similarity=0.347  Sum_probs=99.4

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.....++|+|||+++.........+.+||+.|+|   |    |++..
T Consensus       165 ~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~  237 (400)
T 1nxk_A          165 EIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVA---P----EVLGP  237 (400)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-----------CTTCC---G----GGSCC
T ss_pred             HHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccCCCCccccCCCCCCccC---H----hhcCC
Confidence            3478999999999987     8999999998743223499999999987765555667899999999   9    88877


Q ss_pred             cCcce--------------eccCCCCCCCCChH----HHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcc
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPM----QTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~----~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R  141 (185)
                      ..|+.              ++|..||. +.+..    .....+. .+  .+.+|    ..+|.++++||++||..||.+|
T Consensus       238 ~~~~~~~DiwslG~il~ell~g~~pf~-~~~~~~~~~~~~~~i~-~~--~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  313 (400)
T 1nxk_A          238 EKYDKSCDMWSLGVIMYILLCGYPPFY-SNHGLAISPGMKTRIR-MG--QYEFPNPEWSEVSEEVKMLIRNLLKTEPTQR  313 (400)
T ss_dssp             CCSSSHHHHHHHHHHHHHHHHSSCSCC-CCTTCSSCCSHHHHHH-HT--CCCCCTTTTTTSCHHHHHHHHTTSCSSGGGS
T ss_pred             CCCCCcccHHHHHHHHHHHHhCCCCCC-CCccccccHHHHHHHH-cC--cccCCCcccccCCHHHHHHHHHHCCCChhHC
Confidence            66665              89999997 54432    2344454 23  33444    4689999999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCC
Q psy3184         142 LGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       142 ~~~~~~~~~~ll~hp~f~~  160 (185)
                      |     ++.++++||||..
T Consensus       314 p-----t~~eil~hp~~~~  327 (400)
T 1nxk_A          314 M-----TITEFMNHPWIMQ  327 (400)
T ss_dssp             C-----CHHHHHHSHHHHT
T ss_pred             c-----CHHHHhcCccccC
Confidence            9     6699999999964

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.83  E-value=1.8e-20  Score=149.77  Aligned_cols=140  Identities=14%  Similarity=0.202  Sum_probs=111.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.   .++|+|||.+.............||+.|+|   |    |++.+.
T Consensus       125 ~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  194 (326)
T 1blx_A          125 MMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSG---QIKLADFGLARIYSFQMALTSVVVTLWYRA---P----EVLLQS  194 (326)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC---CEEECSCCSCCCCCGGGGGCCCCCCCTTCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHHCCceeccCCHHHeEEcCCC---CEEEecCcccccccCCCCccccccccceeC---H----HHHhcC
Confidence            467999999999998     7899999998853   499999999987765555566789999999   9    888766


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCC--Cc----------------------cCCCCCCCHHH
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI--DK----------------------IPFPKHVTRTA  126 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~--~~----------------------~~~p~~~s~~~  126 (185)
                      .++.              ++|..||. +.+.......+.....  ..                      ..++..++.++
T Consensus       195 ~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (326)
T 1blx_A          195 SYATPVDLWSVGCIFAEMFRRKPLFR-GSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELG  273 (326)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHH
T ss_pred             CCCcchhHHHHHHHHHHHHcCCCCCC-CCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHH
Confidence            5554              89999999 7777666666541100  00                      12234689999


Q ss_pred             HHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhh
Q psy3184         127 QSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       127 ~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                      ++||.+||..||.+||     ++.++++||||+.+.+..
T Consensus       274 ~~li~~~L~~dP~~Rp-----t~~e~l~hp~~~~~~~~~  307 (326)
T 1blx_A          274 KDLLLKCLTFNPAKRI-----SAYSALSHPYFQDLERCK  307 (326)
T ss_dssp             HHHHHHHSCSSTTTSC-----CHHHHHTSGGGTTCCCCC
T ss_pred             HHHHHHHcCCCcccCC-----CHHHHhcCccccccchhh
Confidence            9999999999999999     669999999999887764

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.83  E-value=3.2e-20  Score=146.30  Aligned_cols=134  Identities=14%  Similarity=0.253  Sum_probs=100.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||+.     ||||+||++..+.....++|+|||.+............+||+.|+|   |    |++.. 
T Consensus       129 i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~a---P----E~~~~-  200 (285)
T 3is5_A          129 LMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMA---P----EVFKR-  200 (285)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----------CTTGGGCC---H----HHHTT-
T ss_pred             HHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccCcCcccccCcCC---h----HHhcc-
Confidence            468999999999998     8899999996543333599999999987665555667789999999   9    87653 


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC---CCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP---KHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p---~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .++.              ++|..||. +.+.......+. ..  ...++   ..+++++.+||.+||..||.+||     
T Consensus       201 ~~~~~~Di~slG~il~~ll~g~~pf~-~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----  271 (285)
T 3is5_A          201 DVTFKCDIWSAGVVMYFLLTGCLPFT-GTSLEEVQQKAT-YK--EPNYAVECRPLTPQAVDLLKQMLTKDPERRP-----  271 (285)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HC--CCCCCC--CCCCHHHHHHHHHHTCSCTTTSC-----
T ss_pred             CCCcccCeehHHHHHHHHHhCCCCCC-CCCHHHHHhhhc-cC--CcccccccCcCCHHHHHHHHHHccCChhhCc-----
Confidence            3333              89999999 888777777666 22  22222   34799999999999999999999     


Q ss_pred             ChhhhhcCCCCCC
Q psy3184         148 GIVDIKKHKWFQG  160 (185)
Q Consensus       148 ~~~~ll~hp~f~~  160 (185)
                      ++.++++||||+.
T Consensus       272 s~~e~l~hp~f~~  284 (285)
T 3is5_A          272 SAAQVLHHEWFKQ  284 (285)
T ss_dssp             CHHHHHTSGGGGC
T ss_pred             CHHHHhcCHHhhc
Confidence            6699999999975

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.83  E-value=8.3e-21  Score=157.83  Aligned_cols=145  Identities=22%  Similarity=0.403  Sum_probs=103.0

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.....++|+|||+++...........+||+.|+|   |    |++..
T Consensus       243 ~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~  315 (419)
T 3i6u_A          243 LYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLA---P----EVLVS  315 (419)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC-----------CTTCC---T----TTTC-
T ss_pred             HHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeecccceecCCCccccccCCCCCccC---c----eeeec
Confidence            3468999999999998     8999999998654333599999999987766555667899999999   9    77643


Q ss_pred             ---cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCccc
Q psy3184          84 ---VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        84 ---~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                         ..|+.              ++|..||........+...+. .+  ...++    ..++.++.+||.+||..||.+||
T Consensus       316 ~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~-~~--~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp  392 (419)
T 3i6u_A          316 VGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQIT-SG--KYNFIPEVWAEVSEKALDLVKKLLVVDPKARF  392 (419)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHH-TT--CCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSC
T ss_pred             CCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHh-cC--CCCCCchhhcccCHHHHHHHHHHccCChhHCc
Confidence               33433              899999983333344445555 23  33332    46899999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCChhhhhc
Q psy3184         143 GYQRGGIVDIKKHKWFQGFDWDGLRN  168 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~~~~~~~~~  168 (185)
                           ++.++++||||++.+|.....
T Consensus       393 -----s~~e~l~hp~~~~~~~~~~~~  413 (419)
T 3i6u_A          393 -----TTEEALRHPWLQDEDMKRKFQ  413 (419)
T ss_dssp             -----CHHHHHHSGGGCCHHHHHHHH
T ss_pred             -----CHHHHhCCcccCChhHHHHHH
Confidence                 669999999999988876443

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.82  E-value=2.1e-20  Score=158.27  Aligned_cols=137  Identities=20%  Similarity=0.293  Sum_probs=112.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ...||+.||.|||++     ||||+||+++.......++|+|||++............+||+.|+|   |    |++.. 
T Consensus       141 i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~a---P----E~l~~-  212 (494)
T 3lij_A          141 IIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIA---P----EVLRK-  212 (494)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCBCCCCSCTTTCC---H----HHHTT-
T ss_pred             HHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccccccCCCcCeeC---H----HHHcc-
Confidence            478999999999998     8999999998754333499999999988776666677899999999   9    87753 


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      .|+.              ++|.+||. +.+..+++..+. .+...+..|  ..+|+++++||++||..||.+||     +
T Consensus       213 ~~~~~~DiwslG~il~~ll~g~~pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~-----s  285 (494)
T 3lij_A          213 KYDEKCDVWSIGVILFILLAGYPPFG-GQTDQEILRKVE-KGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRI-----S  285 (494)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HTCCCCCSGGGTTSCHHHHHHHHHHTCSSTTTSC-----C
T ss_pred             cCCCchhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHH-hCCCCCCchhcccCCHHHHHHHHHHCCCChhhCc-----c
Confidence            3554              89999999 888888888887 332222222  35899999999999999999999     6


Q ss_pred             hhhhhcCCCCCCC
Q psy3184         149 IVDIKKHKWFQGF  161 (185)
Q Consensus       149 ~~~ll~hp~f~~~  161 (185)
                      +.++++||||+..
T Consensus       286 ~~e~l~hp~~~~~  298 (494)
T 3lij_A          286 AQQALEHPWIKEM  298 (494)
T ss_dssp             HHHHHTCHHHHHH
T ss_pred             HHHHhcCcccccC
Confidence            6999999999764

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.82  E-value=2.9e-20  Score=148.86  Aligned_cols=141  Identities=19%  Similarity=0.241  Sum_probs=104.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      .+.||+.||+|||++     ||||+||+++.+.  ..++|+|||.++...........+||+.|+|   |    |++.. 
T Consensus       135 ~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~--~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  205 (330)
T 3nsz_A          135 YMYEILKALDYCHSMGIMHRDVKPHNVMIDHEH--RKLRLIDWGLAEFYHPGQEYNVRVASRYFKG---P----ELLVDY  205 (330)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEEETTT--TEEEECCCTTCEECCTTCCCCSCCSCGGGCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCC--CEEEEEeCCCceEcCCCCccccccccccccC---h----hhhcCC
Confidence            468999999999998     8999999998753  2599999999988776666667889999999   9    88765 


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhc-C---------CCcc-----------------------
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-G---------IDKI-----------------------  116 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~---------~~~~-----------------------  116 (185)
                      ..|+.              ++|..||..+.+.......+... +         ....                       
T Consensus       206 ~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (330)
T 3nsz_A          206 QMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVH  285 (330)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCC
T ss_pred             CcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhcc
Confidence            33443              89999996344433333222100 0         0000                       


Q ss_pred             -CCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         117 -PFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       117 -~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                       ..+..+++++.+||.+||..||.+||     +++++++||||+++.|+
T Consensus       286 ~~~~~~~~~~~~~li~~~L~~dP~~Rp-----ta~e~l~hp~f~~~~~~  329 (330)
T 3nsz_A          286 SENQHLVSPEALDFLDKLLRYDHQSRL-----TAREAMEHPYFYTVVKD  329 (330)
T ss_dssp             TTTGGGCCHHHHHHHHTTSCSSGGGSC-----CHHHHHTSGGGTTCC--
T ss_pred             ccccccCCHHHHHHHHHHhcCCcccCC-----CHHHHhcCccHhhhccC
Confidence             11123799999999999999999999     66999999999998775

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.82  E-value=1.5e-20  Score=152.78  Aligned_cols=137  Identities=19%  Similarity=0.314  Sum_probs=109.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...||+.||+|||++     ||||+||+++.+.....++|+|||++....... .....+||+.|+|   |    |++..
T Consensus       135 i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~a---P----E~~~~  207 (351)
T 3c0i_A          135 YMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMA---P----EVVKR  207 (351)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccC---H----HHHcC
Confidence            467999999999998     899999999875433349999999998775543 2446789999999   9    88877


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      ..|+.              ++|..||. +. ...++..+. .+  ...++    ..+|.++++||.+||..||.+||   
T Consensus       208 ~~~~~~~DiwslG~il~~ll~g~~pf~-~~-~~~~~~~i~-~~--~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~---  279 (351)
T 3c0i_A          208 EPYGKPVDVWGCGVILFILLSGCLPFY-GT-KERLFEGII-KG--KYKMNPRQWSHISESAKDLVRRMLMLDPAERI---  279 (351)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCSSC-SS-HHHHHHHHH-HT--CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSC---
T ss_pred             CCCCchHhhHHHHHHHHHHHHCCCCCC-Cc-HHHHHHHHH-cC--CCCCCccccccCCHHHHHHHHHHCCCChhHCc---
Confidence            66665              89999998 54 456666666 23  33333    46899999999999999999999   


Q ss_pred             CCChhhhhcCCCCCCCCh
Q psy3184         146 RGGIVDIKKHKWFQGFDW  163 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~~~~  163 (185)
                        ++.++++||||+..++
T Consensus       280 --s~~e~l~hp~~~~~~~  295 (351)
T 3c0i_A          280 --TVYEALNHPWLKERDR  295 (351)
T ss_dssp             --CHHHHHTSHHHHTHHH
T ss_pred             --CHHHHhcChhhcCCcc
Confidence              6699999999986543

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.82  E-value=6.5e-20  Score=147.86  Aligned_cols=139  Identities=21%  Similarity=0.378  Sum_probs=113.0

Q ss_pred             cHHHHHHHHHHHhh-c-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQ-A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~-~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||+ .     ||+|+||+++.+.   .++|+|||.+...... ......|++.|+|   |    |++.+
T Consensus       156 i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~~~---~~kl~dfg~~~~~~~~-~~~~~~~~~~y~a---P----E~~~~  224 (348)
T 2pml_X          156 IIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNG---RVKLSDFGESEYMVDK-KIKGSRGTYEFMP---P----EFFSN  224 (348)
T ss_dssp             HHHHHHHHHHHHHHTSCEECCCCCGGGEEECTTS---CEEECCCTTCEECBTT-EECSSCSCGGGCC---G----GGGSS
T ss_pred             HHHHHHHHHHHHhccCCEeecCCChHhEEEcCCC---cEEEeccccccccccc-cccCCCCCcCccC---c----hhhcC
Confidence            47899999999998 6     8999999998853   4999999999876443 4456789999999   9    87765


Q ss_pred             c-Ccce---------------eccCCCCCCCCCh-HHHHHHHHhcCCCccCCC-------------------CCCCHHHH
Q psy3184          84 V-GIDN---------------IFSRPPFCVMNDP-MQTYNMIINVGIDKIPFP-------------------KHVTRTAQ  127 (185)
Q Consensus        84 ~-~~~~---------------l~g~~Pf~~~~~~-~~~~~~i~~~~~~~~~~p-------------------~~~s~~~~  127 (185)
                      . .|+.               ++|..||. +.+. .+....+. .+  ...+|                   ..++.++.
T Consensus       225 ~~~~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~~i~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  300 (348)
T 2pml_X          225 ESSYNGAKVDIWSLGICLYVMFYNVVPFS-LKISLVELFNNIR-TK--NIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDI  300 (348)
T ss_dssp             CCCEEHHHHHHHHHHHHHHHHHHSSCSSC-CSSCSHHHHHHHT-SC--CCCCCCSSSSSTTTTCC--------CCCHHHH
T ss_pred             CCCCCcchhhHHHHHHHHHHHHhCCCCCC-CCCcHHHHHHHHh-cc--CcCCccchhhhhccccccccccchhhcCHHHH
Confidence            5 3332               89999998 5555 77777776 33  45555                   56899999


Q ss_pred             HHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhc
Q psy3184         128 SLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRN  168 (185)
Q Consensus       128 ~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~  168 (185)
                      +||.+||..||.+||     ++.++++||||++..|..+..
T Consensus       301 ~li~~~L~~dP~~Rp-----s~~e~l~hp~f~~~~~~~~~~  336 (348)
T 2pml_X          301 DFLKLFLRKNPAERI-----TSEDALKHEWLADTNIEDLRE  336 (348)
T ss_dssp             HHHHHHCCSSGGGSC-----CHHHHHTSGGGTTCCHHHHHH
T ss_pred             HHHHHHccCChhhCC-----CHHHHhcCccccCCCHHHHHH
Confidence            999999999999999     669999999999999987643

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.82  E-value=5e-20  Score=145.77  Aligned_cols=131  Identities=21%  Similarity=0.363  Sum_probs=105.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||++...... ......+||+.|+|   |    |++..
T Consensus       142 ~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~~  211 (298)
T 2zv2_A          142 YFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDG---HIKIADFGVSNEFKGSDALLSNTVGTPAFMA---P----ESLSE  211 (298)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEECTTS---CEEECCCTTCEECSSSSCEECCCCSCGGGCC---G----GGCCT
T ss_pred             HHHHHHHHHHHHHHCCeeccCCCHHHEEECCCC---CEEEecCCCccccccccccccCCcCCccccC---h----hhhcc
Confidence            478999999999997     8999999998853   4999999999876543 23445789999999   9    77764


Q ss_pred             cCc---ce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          84 VGI---DN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        84 ~~~---~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ...   +.              ++|..||. +.+.......+. .+  ...+|  ..+++++.+||.+||..||.+||  
T Consensus       212 ~~~~~~~~~~Di~slG~~l~~l~~g~~pf~-~~~~~~~~~~~~-~~--~~~~~~~~~~~~~l~~li~~~l~~dp~~R~--  285 (298)
T 2zv2_A          212 TRKIFSGKALDVWAMGVTLYCFVFGQCPFM-DERIMCLHSKIK-SQ--ALEFPDQPDIAEDLKDLITRMLDKNPESRI--  285 (298)
T ss_dssp             TCCCEESHHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HC--CCCCCSSSCCCHHHHHHHHHHTCSCTTTSC--
T ss_pred             CCCCCCCchhhhHhHHHHHHHHHHCCCCCC-CccHHHHHHHHh-cc--cCCCCCccccCHHHHHHHHHHhhcChhhCC--
Confidence            331   21              89999999 887777777776 23  33444  46899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQ  159 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~  159 (185)
                         ++.++++||||+
T Consensus       286 ---s~~e~l~hp~~~  297 (298)
T 2zv2_A          286 ---VVPEIKLHPWVT  297 (298)
T ss_dssp             ---CHHHHTTCHHHH
T ss_pred             ---CHHHHhcCcccc
Confidence               669999999984

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.82  E-value=1.2e-20  Score=151.92  Aligned_cols=150  Identities=14%  Similarity=0.177  Sum_probs=105.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCC----------------CCCeeEEcccCceeEeecCcccccccCCccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGE----------------AGNDLFVSAEGEFQVIKDGKILRLLSGRPPF   68 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~----------------~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y   68 (185)
                      .+.||+.||+|||++     ||||+||++..+.                ....++|+|||.++....  .....+||+.|
T Consensus       128 i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~--~~~~~~gt~~y  205 (355)
T 2eu9_A          128 MAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHE--HHTTIVATRHY  205 (355)
T ss_dssp             HHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTS--CCCSSCSCGGG
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCccccccc--cccCCcCCCcc
Confidence            478999999999998     8999999994321                122499999999976432  33457899999


Q ss_pred             cccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCcc------------------
Q psy3184          69 CVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKI------------------  116 (185)
Q Consensus        69 ~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~------------------  116 (185)
                      +|   |    |++.+..|+.              ++|..||. +.+..+....+.......+                  
T Consensus       206 ~a---P----E~~~~~~~~~~~Di~slG~il~el~~g~~pf~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  277 (355)
T 2eu9_A          206 RP---P----EVILELGWAQPCDVWSIGCILFEYYRGFTLFQ-THENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGL  277 (355)
T ss_dssp             CC---H----HHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEE
T ss_pred             cC---C----eeeecCCCCCccchHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHcCCCcHHHhhhccchhhhccccc
Confidence            99   9    8887766664              89999998 7665554443321000000                  


Q ss_pred             C-----------------------CCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCC
Q psy3184         117 P-----------------------FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTP  173 (185)
Q Consensus       117 ~-----------------------~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~  173 (185)
                      .                       .....+.++.+||.+||..||.+||     ++.++++||||++++|+.........
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp-----t~~e~l~hp~f~~~~~~~~~~~~~~~  352 (355)
T 2eu9_A          278 VWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRI-----TLAEALLHPFFAGLTPEERSFHTSRN  352 (355)
T ss_dssp             CCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC-----CHHHHTTSGGGGGCCHHHHC------
T ss_pred             ccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCc-----CHHHHhcChhhcCCChhhccccccCC
Confidence            0                       0011246889999999999999999     66999999999999998776655444


Q ss_pred             C
Q psy3184         174 P  174 (185)
Q Consensus       174 p  174 (185)
                      |
T Consensus       353 p  353 (355)
T 2eu9_A          353 P  353 (355)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.82  E-value=8.5e-20  Score=144.08  Aligned_cols=138  Identities=15%  Similarity=0.177  Sum_probs=103.6

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++..... ......+||+.|+|   |    |++.
T Consensus       105 ~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~a---P----E~~~  174 (292)
T 3o0g_A          105 SFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNG---ELKLANFGLARAFGIPVRCYSAEVVTLWYRP---P----DVLF  174 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS---CEEECCCTTCEECCSCCSCCCSCCSCGGGCC---H----HHHT
T ss_pred             HHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCC---CEEEeecccceecCCccccccCCccccCCcC---h----HHHc
Confidence            3478999999999998     8999999999863   4999999999876543 34456789999999   9    8876


Q ss_pred             ccC-cce--------------eccCCCCCCCCChHHHHHHHHhcCCC--------------------------ccCCCCC
Q psy3184          83 NVG-IDN--------------IFSRPPFCVMNDPMQTYNMIINVGID--------------------------KIPFPKH  121 (185)
Q Consensus        83 ~~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~--------------------------~~~~p~~  121 (185)
                      +.. |+.              ++|..||..+.+..+....+......                          .......
T Consensus       175 ~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (292)
T 3o0g_A          175 GAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPK  254 (292)
T ss_dssp             TCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTT
T ss_pred             CCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccc
Confidence            544 443              55766644277776666665411000                          0011235


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      ++.++++||.+||..||.+||     +++++++||||+++
T Consensus       255 ~~~~~~~li~~~L~~dP~~R~-----t~~e~l~hp~f~~~  289 (292)
T 3o0g_A          255 LNATGRDLLQNLLKCNPVQRI-----SAEEALQHPYFSDF  289 (292)
T ss_dssp             CCHHHHHHHHHHSCSSGGGSC-----CHHHHHTSGGGTTC
T ss_pred             cChHHHHHHHHHhccChhhCC-----CHHHHhcCcccccC
Confidence            789999999999999999999     66999999999864

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.82  E-value=6.1e-20  Score=147.33  Aligned_cols=137  Identities=17%  Similarity=0.258  Sum_probs=110.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||+.     ||||+||+++.+.   .++|+|||++...... ......+||+.|+|   |    |++..
T Consensus       146 i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~~  215 (321)
T 2c30_A          146 VCEAVLQALAYLHAQGVIHRDIKSDSILLTLDG---RVKLSDFGFCAQISKDVPKRKSLVGTPYWMA---P----EVISR  215 (321)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC---CEEECCCTTCEECCSSSCCBCCCCSCGGGCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHEEECCCC---cEEEeeeeeeeecccCccccccccCCccccC---H----hhhcC
Confidence            478999999999998     8999999998753   4999999999876543 23456789999999   9    88876


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..|+.              ++|..||. +.+..+....+..........+..+++++.+||.+||..||.+||     ++
T Consensus       216 ~~~~~~~Dv~slG~il~el~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp-----s~  289 (321)
T 2c30_A          216 SLYATEVDIWSLGIMVIEMVDGEPPYF-SDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERA-----TA  289 (321)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCTTT-TSCHHHHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSC-----CH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCc-----CH
Confidence            65554              89999999 888777777776322122233456899999999999999999999     66


Q ss_pred             hhhhcCCCCCCCC
Q psy3184         150 VDIKKHKWFQGFD  162 (185)
Q Consensus       150 ~~ll~hp~f~~~~  162 (185)
                      .++++||||....
T Consensus       290 ~ell~hp~~~~~~  302 (321)
T 2c30_A          290 QELLDHPFLLQTG  302 (321)
T ss_dssp             HHHHTSGGGGGCC
T ss_pred             HHHhcChhhccCC
Confidence            9999999997544

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.82  E-value=7.4e-20  Score=152.57  Aligned_cols=145  Identities=17%  Similarity=0.219  Sum_probs=99.8

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-----------------------cc
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-----------------------IL   59 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-----------------------~~   59 (185)
                      ...+.||+.||.|||++     ||||+||+++.+.   .++|+|||+++......                       ..
T Consensus       132 ~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~---~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (432)
T 3n9x_A          132 KTILYNLLLGENFIHESGIIHRDLKPANCLLNQDC---SVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQL  208 (432)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC---CEEECCCTTCEEC-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCC---CEEEccCCCcccccccccccccccccccccccccccchhccc
Confidence            34578999999999998     8999999998863   49999999998764421                       23


Q ss_pred             ccccCCccccccCCCcccccchh-ccCcce--------------ec-----------cCCCCCCCCCh------------
Q psy3184          60 RLLSGRPPFCVMNDPMQTYNMII-NVGIDN--------------IF-----------SRPPFCVMNDP------------  101 (185)
Q Consensus        60 ~~~~gt~~y~a~~~P~~~~E~~~-~~~~~~--------------l~-----------g~~Pf~~~~~~------------  101 (185)
                      ...+||+.|+|   |    |++. ...|+.              ++           |.++|. +.+.            
T Consensus       209 ~~~~gt~~Y~A---P----E~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~-g~~~~~~~~~~~~~~~  280 (432)
T 3n9x_A          209 TSHVVTRWYRA---P----ELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFP-GSSCFPLSPDRNSKKV  280 (432)
T ss_dssp             --CCCCCTTCC---H----HHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCC-CSCSCC----------
T ss_pred             cCCCCCccccC---H----HHHhcCCCCCcccccchHHHHHHHHHhcccccccccccccccCC-CccccccCcccccccc
Confidence            56799999999   9    8753 344554              43           555665 4331            


Q ss_pred             -----HHHHHHHHh-cC--------------------CCccCCC-------CCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184         102 -----MQTYNMIIN-VG--------------------IDKIPFP-------KHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus       102 -----~~~~~~i~~-~~--------------------~~~~~~p-------~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                           ...+..|.. .|                    ..+...+       ..+++++.+||++||..||.+||     +
T Consensus       281 ~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~-----t  355 (432)
T 3n9x_A          281 HEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLLESMLKFNPNKRI-----T  355 (432)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSTTTSC-----C
T ss_pred             cccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHhcCCcccCC-----C
Confidence                 111111110 00                    0001111       35899999999999999999999     6


Q ss_pred             hhhhhcCCCCCCCChhhhhc
Q psy3184         149 IVDIKKHKWFQGFDWDGLRN  168 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~  168 (185)
                      ++++++||||++++|.....
T Consensus       356 a~e~L~Hp~f~~~~~~~~e~  375 (432)
T 3n9x_A          356 IDQALDHPYLKDVRKKKLEN  375 (432)
T ss_dssp             HHHHHTCGGGTTTCCTTTC-
T ss_pred             HHHHhcChhhhhccCcccCc
Confidence            69999999999999987654

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.82  E-value=2.7e-20  Score=157.91  Aligned_cols=135  Identities=16%  Similarity=0.255  Sum_probs=113.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||++     ||||+||+++.+.....++|+|||++............+||+.|+|   |    |++.. 
T Consensus       151 i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~-  222 (504)
T 3q5i_A          151 IMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIA---P----EVLKK-  222 (504)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCC---H----HHHTT-
T ss_pred             HHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCCccccccCCcCCCC---H----HHhcc-
Confidence            478999999999998     8999999998764333599999999998776666677899999999   9    87764 


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .|+.              ++|.+||. +.+..+++..+. .+  .+.++    ..+|+++++||++||..||.+||    
T Consensus       223 ~~~~~~DiwslG~il~~ll~g~~pf~-~~~~~~~~~~i~-~~--~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~----  294 (504)
T 3q5i_A          223 KYNEKCDVWSCGVIMYILLCGYPPFG-GQNDQDIIKKVE-KG--KYYFDFNDWKNISDEAKELIKLMLTYDYNKRC----  294 (504)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HC--CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSC----
T ss_pred             CCCchHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHH-cC--CCCCCccccCCCCHHHHHHHHHHcCCChhHCC----
Confidence            3554              89999999 888889988888 33  44444    56899999999999999999999    


Q ss_pred             CChhhhhcCCCCCCC
Q psy3184         147 GGIVDIKKHKWFQGF  161 (185)
Q Consensus       147 ~~~~~ll~hp~f~~~  161 (185)
                       ++.++++||||+..
T Consensus       295 -t~~e~l~h~~~~~~  308 (504)
T 3q5i_A          295 -TAEEALNSRWIKKY  308 (504)
T ss_dssp             -CHHHHHTSHHHHHT
T ss_pred             -CHHHHhcCHhhhhc
Confidence             66999999999643

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.82  E-value=4.4e-20  Score=149.15  Aligned_cols=135  Identities=20%  Similarity=0.397  Sum_probs=108.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.+............+||+.|+|   |    |++.+.
T Consensus       135 i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~---~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~~  204 (335)
T 3dls_A          135 IFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDF---TIKLIDFGSAAYLERGKLFYTFCGTIEYCA---P----EVLMGN  204 (335)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS---CEEECCCTTCEECCTTCCBCEECSCGGGCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCC---cEEEeecccceECCCCCceeccCCCccccC---h----hhhcCC
Confidence            478999999999998     8999999998853   499999999998877666677899999999   9    888766


Q ss_pred             Cc-ce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GI-DN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~-~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .+ +.              ++|..||. ...  +    ..   ......|..++.++.+||.+||..||.+||     ++
T Consensus       205 ~~~~~~~DiwslG~il~el~~g~~pf~-~~~--~----~~---~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp-----s~  269 (335)
T 3dls_A          205 PYRGPELEMWSLGVTLYTLVFEENPFC-ELE--E----TV---EAAIHPPYLVSKELMSLVSGLLQPVPERRT-----TL  269 (335)
T ss_dssp             CBCSHHHHHHHHHHHHHHHHHSSCSCS-SGG--G----GT---TTCCCCSSCCCHHHHHHHHHHTCSSGGGSC-----CH
T ss_pred             CCCCCcccchhHHHHHHHHHhCCCchh-hHH--H----HH---hhccCCCcccCHHHHHHHHHHccCChhhCc-----CH
Confidence            55 32              89999997 421  1    11   234556677999999999999999999999     66


Q ss_pred             hhhhcCCCCCC------CChhhhhcc
Q psy3184         150 VDIKKHKWFQG------FDWDGLRNQ  169 (185)
Q Consensus       150 ~~ll~hp~f~~------~~~~~~~~~  169 (185)
                      .++++||||+.      ..|..+...
T Consensus       270 ~ell~hp~~~~~~~~~~~~~~~~~~~  295 (335)
T 3dls_A          270 EKLVTDPWVTQPVNLADYTWEEVFRV  295 (335)
T ss_dssp             HHHHHCTTTTCCCCGGGCCHHHHC--
T ss_pred             HHHhcCccccCCccccccCHHHHhhh
Confidence            99999999965      567665443

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.82  E-value=8.6e-20  Score=144.04  Aligned_cols=141  Identities=21%  Similarity=0.371  Sum_probs=110.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      .+.||+.||+|||++     ||+|+||+++.+.   .++|+|||.+.....+......+|++.|+|   |    |++.. 
T Consensus       129 ~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  198 (298)
T 1phk_A          129 IMRALLEVICALHKLNIVHRDLKPENILLDDDM---NIKLTDFGFSCQLDPGEKLREVCGTPSYLA---P----EIIECS  198 (298)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC---CEEECCCTTCEECCTTCCBCCCCSCGGGCC---H----HHHHHH
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCcceEEEcCCC---cEEEecccchhhcCCCcccccccCCccccC---H----HHhccc
Confidence            478999999999998     8999999998753   399999999988766666667889999999   9    77642 


Q ss_pred             -----cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCccc
Q psy3184          84 -----VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        84 -----~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                           ..++.              ++|..||. +.+.......+. .+......|  ..++.++.+||.+||..||.+||
T Consensus       199 ~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp  276 (298)
T 1phk_A          199 MNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFW-HRKQMLMLRMIM-SGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRY  276 (298)
T ss_dssp             HCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSC
T ss_pred             cccccccCCcccccHhHHHHHHHHHHCCCCCc-CccHHHHHHHHh-cCCcccCcccccccCHHHHHHHHHHccCCcccCC
Confidence                 22332              89999998 888777777777 332222222  35899999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCChhhhh
Q psy3184         143 GYQRGGIVDIKKHKWFQGFDWDGLR  167 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~~~~~~~~  167 (185)
                           ++.++++||||+...++.+.
T Consensus       277 -----s~~~ll~h~~~~~~~~~~~~  296 (298)
T 1phk_A          277 -----TAEEALAHPFFQQYVVEEVR  296 (298)
T ss_dssp             -----CHHHHTTSGGGCTTC-----
T ss_pred             -----CHHHHHhChHhhhccchhhc
Confidence                 66999999999998887654

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.82  E-value=4e-20  Score=148.01  Aligned_cols=140  Identities=14%  Similarity=0.218  Sum_probs=106.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.++..... ......+||+.|+|   |    |++.+
T Consensus       113 ~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~a---P----E~~~~  182 (317)
T 2pmi_A          113 FQWQLLQGLAFCHENKILHRDLKPQNLLINKRG---QLKLGDFGLARAFGIPVNTFSSEVVTLWYRA---P----DVLMG  182 (317)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC---CEEECCCSSCEETTSCCCCCCCCCSCCTTCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCC---CEEECcCccceecCCCcccCCCCcccccccC---c----hHhhC
Confidence            356999999999998     8999999998853   4999999999876433 23445689999999   9    88765


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CCC------------------------------ccC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GID------------------------------KIP  117 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~------------------------------~~~  117 (185)
                      . .|+.              ++|..||. +.+..+....+... +..                              ...
T Consensus       183 ~~~~~~~~DiwslG~il~el~~g~~pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (317)
T 2pmi_A          183 SRTYSTSIDIWSCGCILAEMITGKPLFP-GTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPH  261 (317)
T ss_dssp             CCCCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGG
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhccc
Confidence            3 3443              89999999 87777766665411 000                              001


Q ss_pred             CCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhh
Q psy3184         118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       118 ~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                      .+..++.++.+||.+||..||.+||     ++.++++||||+...|..
T Consensus       262 ~~~~~~~~l~~li~~~L~~dP~~Rp-----t~~e~l~hp~f~~~~~~~  304 (317)
T 2pmi_A          262 TKEPLDGNLMDFLHGLLQLNPDMRL-----SAKQALHHPWFAEYYHHA  304 (317)
T ss_dssp             CSSCCCHHHHHHHHHHSCSSGGGSC-----CHHHHTTSGGGGGGCC--
T ss_pred             ccccCCHHHHHHHHHHCCCCcccCC-----CHHHHhCChhhhcccchh
Confidence            1235789999999999999999999     669999999998776653

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.82  E-value=2e-20  Score=150.49  Aligned_cols=143  Identities=16%  Similarity=0.209  Sum_probs=101.1

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCC--CCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGE--AGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~--~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ..+.||+.||+|||++     ||||+||++..+.  ....++|+|||.+...... ......+||+.|+|   |    |+
T Consensus       136 ~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~a---P----E~  208 (329)
T 3gbz_A          136 SFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRP---P----EI  208 (329)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCC---H----HH
T ss_pred             HHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccC---H----HH
Confidence            3478999999999998     8899999996432  1224899999999765432 33445688999999   9    88


Q ss_pred             hhccC-cce--------------eccCCCCCCCCChHHHHHHHHhcCC--CccC-------------CC-----------
Q psy3184          81 IINVG-IDN--------------IFSRPPFCVMNDPMQTYNMIINVGI--DKIP-------------FP-----------  119 (185)
Q Consensus        81 ~~~~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~--~~~~-------------~p-----------  119 (185)
                      +.+.. |+.              ++|..||. +.+..+....+.....  ....             +|           
T Consensus       209 ~~~~~~~~~~~DiwslG~il~ell~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (329)
T 3gbz_A          209 LLGSRHYSTSVDIWSIACIWAEMLMKTPLFP-GDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVL  287 (329)
T ss_dssp             HTTCCCCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHH
T ss_pred             hcCCCCCCcHHHHHHHHHHHHHHHHCCCCcC-CCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhc
Confidence            76533 443              89999999 7777666665542100  0000             01           


Q ss_pred             -CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         120 -KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       120 -~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                       ..+++++.+||.+||..||.+||     ++.++++||||++.+|+
T Consensus       288 ~~~~~~~~~~li~~~L~~dP~~R~-----t~~e~l~hp~f~~~~~~  328 (329)
T 3gbz_A          288 GALLDDEGLDLLTAMLEMDPVKRI-----SAKNALEHPYFSHNDFD  328 (329)
T ss_dssp             GGGSCHHHHHHHHHHTCSSGGGSC-----CHHHHHTSGGGSSSCSC
T ss_pred             ccccCHHHHHHHHHHccCChhhCC-----CHHHHhCCcccCCCCCC
Confidence             12789999999999999999999     66999999999999986

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.82  E-value=4.2e-20  Score=146.81  Aligned_cols=149  Identities=16%  Similarity=0.186  Sum_probs=98.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.|++.||.|||+.     ||||+||+++.+.   .++|+|||.+...... ......+||+.|+|   |    |++.+
T Consensus       107 i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  176 (311)
T 4agu_A          107 ITWQTLQAVNFCHKHNCIHRDVKPENILITKHS---VIKLCDFGFARLLTGPSDYYDDEVATRWYRS---P----ELLVG  176 (311)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS---CEEECCCTTCEECC------------GGGCC---H----HHHHT
T ss_pred             HHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCC---CEEEeeCCCchhccCcccccCCCcCCccccC---h----HHHhc
Confidence            467999999999998     8999999998753   4999999999876533 33446689999999   9    88765


Q ss_pred             -cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCC----------------ccCCC------------C
Q psy3184          84 -VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID----------------KIPFP------------K  120 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~----------------~~~~p------------~  120 (185)
                       ..|+.              ++|..||. +.+..+....+......                ....|            .
T Consensus       177 ~~~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (311)
T 4agu_A          177 DTQYGPPVDVWAIGCVFAELLSGVPLWP-GKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFP  255 (311)
T ss_dssp             CSCCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCT
T ss_pred             CCCCCcchhhHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcc
Confidence             33443              89999998 77665554443310000                00111            3


Q ss_pred             CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCC
Q psy3184         121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPP  174 (185)
Q Consensus       121 ~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p  174 (185)
                      .++.++.+||.+||..||.+||     +++++++||||+++.+.....+....|
T Consensus       256 ~~~~~~~~li~~~L~~dP~~Rp-----t~~ell~hp~f~~~~~~~~~~~~~~~~  304 (311)
T 4agu_A          256 NISYPALGLLKGCLHMDPTERL-----TCEQLLHHPYFENIREIEDLAKEHDKP  304 (311)
T ss_dssp             TCCHHHHHHHHHHCCSSTTTSC-----CHHHHHTSGGGTTCC------------
T ss_pred             cccHHHHHHHHHHccCChhhcC-----CHHHHhcChHHHhccCHHHHHHhhccH
Confidence            5789999999999999999999     669999999999998887665555444

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.82  E-value=5.1e-20  Score=150.00  Aligned_cols=153  Identities=16%  Similarity=0.229  Sum_probs=110.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.+.......    .....+||+.|+|   |    |+
T Consensus       133 i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~a---P----E~  202 (364)
T 3qyz_A          133 FLYQILRGLKYIHSANVLHRDLKPSNLLLNTTC---DLKICDFGLARVADPDHDHTGFLTEYVATRWYRA---P----EI  202 (364)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC---CEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHHCCeecCCCChHhEEECCCC---CEEEEeCcceEecCCCCCccccccccccccCCCC---C----HH
Confidence            478999999999998     8999999998853   39999999998765432    2345689999999   9    87


Q ss_pred             hhc-cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCc-----------------------c-----C
Q psy3184          81 IIN-VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK-----------------------I-----P  117 (185)
Q Consensus        81 ~~~-~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~-----------------------~-----~  117 (185)
                      +.. ..|+.              ++|.+||. +.+..+....+......+                       .     .
T Consensus       203 ~~~~~~~~~~~DiwslG~il~ell~g~~pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (364)
T 3qyz_A          203 MLNSKGYTKSIDIWSVGCILAEMLSNRPIFP-GKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNR  281 (364)
T ss_dssp             HHTBCSCSTHHHHHHHHHHHHHHHHSSCSSC-CSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHH
T ss_pred             hcCCCCCCcchhHHHHHHHHHHHHHCCCCCC-CCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHH
Confidence            654 33443              89999998 777666555543100000                       0     0


Q ss_pred             CCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCC
Q psy3184         118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVA  179 (185)
Q Consensus       118 ~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~  179 (185)
                      +...++.++.+||.+||..||.+||     ++.++++||||+.. |.........+||..+.
T Consensus       282 ~~~~~~~~~~~li~~~L~~dP~~R~-----t~~e~l~hp~~~~~-~~~~~~~~~~~~~~~~~  337 (364)
T 3qyz_A          282 LFPNADSKALDLLDKMLTFNPHKRI-----EVEQALAHPYLEQY-YDPSDEPIAEAPFKFDM  337 (364)
T ss_dssp             HCTTSCHHHHHHHHHHTCSSTTTSC-----CHHHHHTSGGGTTT-CCGGGSCCCSSCCCCC-
T ss_pred             hCCCCCHHHHHHHHHHcCCChhhCC-----CHHHHhcCcchhhc-cCcccccCCCCcCCccc
Confidence            1135789999999999999999999     66999999999875 33333333445665443

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.81  E-value=8.7e-20  Score=149.20  Aligned_cols=139  Identities=16%  Similarity=0.197  Sum_probs=106.5

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++....  .....+||+.|+|   |    |++.+
T Consensus       132 ~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~---~~kl~Dfg~a~~~~~--~~~~~~~t~~y~a---P----E~~~~  199 (367)
T 1cm8_A          132 FLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDC---ELKILDFGLARQADS--EMTGYVVTRWYRA---P----EVILN  199 (367)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC---CEEECCCTTCEECCS--SCCSSCSCGGGCC---T----HHHHT
T ss_pred             HHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCC---CEEEEeeeccccccc--ccCcCcCCCCcCC---H----HHHhC
Confidence            3467999999999998     8999999998853   499999999987543  3445789999999   9    87765


Q ss_pred             -cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CCC---------------------------ccCCCC
Q psy3184          84 -VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GID---------------------------KIPFPK  120 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~---------------------------~~~~p~  120 (185)
                       ..|+.              ++|.+||. +.+....+..|... |..                           -..+..
T Consensus       200 ~~~~~~~~DiwslG~il~ell~g~~pf~-~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (367)
T 1cm8_A          200 WMRYTQTVDIWSVGCIMAEMITGKTLFK-GSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILT  278 (367)
T ss_dssp             TTCCCTTHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCT
T ss_pred             CCCCChhhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCC
Confidence             44544              89999999 87776666555411 100                           001224


Q ss_pred             CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhh
Q psy3184         121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       121 ~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                      .+++++.+||.+||..||.+||     +++++++||||+...+..
T Consensus       279 ~~~~~~~~ll~~mL~~dP~~R~-----t~~e~l~hp~f~~~~~~~  318 (367)
T 1cm8_A          279 NASPLAVNLLEKMLVLDAEQRV-----TAGEALAHPYFESLHDTE  318 (367)
T ss_dssp             TCCHHHHHHHHHHSCSSTTTSC-----CHHHHHHSGGGTTTC---
T ss_pred             CCCHHHHHHHHHHccCChhHCC-----CHHHHhcChHHHhhcCCc
Confidence            5799999999999999999999     669999999999876554

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.81  E-value=8.4e-20  Score=152.24  Aligned_cols=137  Identities=12%  Similarity=0.162  Sum_probs=104.2

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||+|||++     ||||+||+++.+... .++|+|||.+....  ....+.+||+.|+|   |    |++.+
T Consensus       204 ~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~-~vkL~DFG~a~~~~--~~~~~~~gt~~y~a---P----E~~~~  273 (429)
T 3kvw_A          204 KFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRS-GIKVIDFGSSCYEH--QRVYTYIQSRFYRA---P----EVILG  273 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSC-CEEECCCTTCEETT--CCCCSSCSCGGGCC---H----HHHHT
T ss_pred             HHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCc-ceEEeecccceecC--CcccccCCCCCccC---h----HHHhC
Confidence            3478999999999987     899999999986432 38999999996543  33456789999999   9    98887


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CCCc-------------------c-------------
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GIDK-------------------I-------------  116 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~~-------------------~-------------  116 (185)
                      ..|+.              ++|.+||. +.+..+.+..+... +...                   +             
T Consensus       274 ~~~~~~~DiwSlG~il~elltG~~pf~-~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (429)
T 3kvw_A          274 ARYGMPIDMWSLGCILAELLTGYPLLP-GEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSV  352 (429)
T ss_dssp             BCCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC--C
T ss_pred             CCCCchHHHHhHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCcccccccccccccc
Confidence            76665              89999999 77776665554411 0000                   0             


Q ss_pred             -----------------------CCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         117 -----------------------PFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       117 -----------------------~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                                             .++...++++.+||++||..||.+||     ++.++++||||+..
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rp-----ta~e~L~Hpw~~~~  415 (429)
T 3kvw_A          353 VLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRM-----TPGQALRHPWLRRR  415 (429)
T ss_dssp             EECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSC-----CHHHHHTSTTTC--
T ss_pred             cccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCC-----CHHHHhCChhhccC
Confidence                                   01123478999999999999999999     66999999999853

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.81  E-value=4e-20  Score=148.91  Aligned_cols=140  Identities=15%  Similarity=0.231  Sum_probs=106.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-----ccccccCCccccccCCCccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-----ILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-----~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .+.||+.||+|||++     ||||+||+++.+... .++|+|||.++.+....     ......||+.|+|   |    |
T Consensus       173 i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~-~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~a---P----E  244 (345)
T 3hko_A          173 IMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSF-EIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVA---P----E  244 (345)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSC-CEEECCCTTCEEGGGTTCC--------CCCGGGCC---H----H
T ss_pred             HHHHHHHHHHHHHHCCccccCCChhhEEEecCCCc-eEEEeeccccccccccCccccccccccCCCccccC---c----h
Confidence            478999999999998     899999999875433 49999999998664321     2345789999999   9    8


Q ss_pred             chhc--cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCcc
Q psy3184          80 MIIN--VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        80 ~~~~--~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R  141 (185)
                      ++..  ..|+.              ++|..||. +.+..+....+. .+......|  ..+++++.+||.+||..||.+|
T Consensus       245 ~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  322 (345)
T 3hko_A          245 VLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFP-GVNDADTISQVL-NKKLCFENPNYNVLSPLARDLLSNLLNRNVDER  322 (345)
T ss_dssp             HHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTS
T ss_pred             hhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCC-CCChHHHHHHHH-hcccccCCcccccCCHHHHHHHHHHcCCChhHC
Confidence            7764  33433              89999999 888777777777 232222222  2489999999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCCCChh
Q psy3184         142 LGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       142 ~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                      |     ++.++++||||+...+.
T Consensus       323 p-----s~~~~l~hp~~~~~~~~  340 (345)
T 3hko_A          323 F-----DAMRALQHPWISQFSDK  340 (345)
T ss_dssp             C-----CHHHHHHSHHHHTTSSC
T ss_pred             C-----CHHHHhcChhhccChHh
Confidence            9     66999999999876553

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.81  E-value=1.3e-19  Score=145.60  Aligned_cols=136  Identities=21%  Similarity=0.313  Sum_probs=104.2

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++......   .....+||+.|+|   |    |+
T Consensus       109 ~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~a---P----E~  178 (323)
T 3tki_A          109 RFFHQLMAGVVYLHGIGITHRDIKPENLLLDERD---NLKISDFGLATVFRYNNRERLLNKMCGTLPYVA---P----EL  178 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC---CEEECCCTTCEECEETTEECCBCSCCSCGGGSC---H----HH
T ss_pred             HHHHHHHHHHHHHHHCCccccccchHHEEEeCCC---CEEEEEeeccceeccCCcccccCCCccCcCccC---c----HH
Confidence            3478999999999998     8999999998853   49999999998765432   3346789999999   9    88


Q ss_pred             hhccCc-ce--------------eccCCCCCCCCCh-HHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          81 IINVGI-DN--------------IFSRPPFCVMNDP-MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        81 ~~~~~~-~~--------------l~g~~Pf~~~~~~-~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      +.+..+ +.              ++|..||. +.+. ...+.... ...........++.++.+||.+||..||.+||  
T Consensus       179 ~~~~~~~~~~~DiwslG~il~~ll~g~~pf~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~--  254 (323)
T 3tki_A          179 LKRREFHAEPVDVWSCGIVLTAMLAGELPWD-QPSDSCQEYSDWK-EKKTYLNPWKKIDSAPLALLHKILVENPSARI--  254 (323)
T ss_dssp             HHCSSBCHHHHHHHHHHHHHHHHHHSSCSCS-SSCTTSHHHHHHH-TTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSC--
T ss_pred             hccCCCCCCcccHHHHHHHHHHHHhCCCCCC-CCchHHHHHHHHh-cccccCCccccCCHHHHHHHHHHccCChhhCc--
Confidence            876654 22              89999998 4433 34444444 22122222256899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~  161 (185)
                         ++.++++||||+..
T Consensus       255 ---t~~eil~h~~~~~~  268 (323)
T 3tki_A          255 ---TIPDIKKDRWYNKP  268 (323)
T ss_dssp             ---CHHHHTTCTTTTCC
T ss_pred             ---CHHHHhhChhhccc
Confidence               66999999999764

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.81  E-value=5.8e-20  Score=147.77  Aligned_cols=137  Identities=20%  Similarity=0.354  Sum_probs=89.2

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||++..+.....++|+|||+++..... ......+||+.|+|   |    |++.
T Consensus       110 ~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~a---P----E~~~  182 (325)
T 3kn6_A          110 YIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAA---P----ELLN  182 (325)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC----------------------------
T ss_pred             HHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCccC---H----HHhc
Confidence            3478999999999998     89999999987543335999999999866443 33456789999999   9    8887


Q ss_pred             ccCcce--------------eccCCCCCCCCC-------hHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMND-------PMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKES  137 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~-------~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~d  137 (185)
                      +..|+.              ++|..||. +.+       ..+....+. .+  .+.++    ..+|+++++||.+||..|
T Consensus       183 ~~~~~~~~DiwslG~il~~ll~g~~pf~-~~~~~~~~~~~~~~~~~i~-~~--~~~~~~~~~~~~s~~~~~li~~~L~~d  258 (325)
T 3kn6_A          183 QNGYDESCDLWSLGVILYTMLSGQVPFQ-SHDRSLTCTSAVEIMKKIK-KG--DFSFEGEAWKNVSQEAKDLIQGLLTVD  258 (325)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHSSCTTC--------CCCHHHHHHHHT-TT--CCCCCSHHHHTSCHHHHHHHHHHHCCC
T ss_pred             CCCCCCccchHHHHHHHHHHHhCCCCCC-CCccccccccHHHHHHHHH-cC--CCCCCcccccCCCHHHHHHHHHHCCCC
Confidence            766665              88999997 433       345666666 33  44444    358999999999999999


Q ss_pred             cCcccCCCCCChhhhhcCCCCCCC
Q psy3184         138 PAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       138 p~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      |.+||     ++.++++||||++.
T Consensus       259 P~~Rp-----t~~ell~h~w~~~~  277 (325)
T 3kn6_A          259 PNKRL-----KMSGLRYNEWLQDG  277 (325)
T ss_dssp             TTTCC-----CTTTSTTCGGGCTT
T ss_pred             hhHCC-----CHHHHhcChhhccC
Confidence            99999     55999999999864

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.81  E-value=1.4e-20  Score=157.23  Aligned_cols=155  Identities=19%  Similarity=0.224  Sum_probs=103.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCC--CCCeeEEcccCceeEeecC----cccccccCCccccccCCCcccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGE--AGNDLFVSAEGEFQVIKDG----KILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~--~~~~i~l~d~g~~~~~~~~----~~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      .+.||+.||+|||++     ||||+||++..+.  ....++|+|||+++....+    ......+||+.|+|   |    
T Consensus       123 i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~A---P----  195 (432)
T 3p23_A          123 LLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIA---P----  195 (432)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCC---G----
T ss_pred             HHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccC---h----
Confidence            468999999999998     8999999996421  1123789999999876543    23345789999999   9    


Q ss_pred             cchhc---cCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCC-CccCCCCCCCHHHHHHHHHHhhcCcC
Q psy3184          79 NMIIN---VGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGI-DKIPFPKHVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        79 E~~~~---~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~-~~~~~p~~~s~~~~~li~~~l~~dp~  139 (185)
                      |++..   ..++.              ++ |..||. ..........+. ... .....+...+..+++||.+||..||.
T Consensus       196 E~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~L~~dP~  273 (432)
T 3p23_A          196 EMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFG-KSLQRQANILLG-ACSLDCLHPEKHEDVIARELIEKMIAMDPQ  273 (432)
T ss_dssp             GGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTB-STTTHHHHHHTT-CCCCTTSCTTCHHHHHHHHHHHHHSCSSGG
T ss_pred             hhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcc-hhhHHHHHHHhc-cCCccccCccccccHHHHHHHHHHHhCCHh
Confidence            77753   22322              66 899997 554444332222 110 11111233567789999999999999


Q ss_pred             cccCCCCCChhhhhcCCCCCCCChh---------hhhcccCCCCccCC
Q psy3184         140 ERLGYQRGGIVDIKKHKWFQGFDWD---------GLRNQTLTPPIIPV  178 (185)
Q Consensus       140 ~R~~~~~~~~~~ll~hp~f~~~~~~---------~~~~~~~~~p~~p~  178 (185)
                      +||     ++.++++||||.++.|.         .+......+|+++.
T Consensus       274 ~Rp-----s~~evl~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (432)
T 3p23_A          274 KRP-----SAKHVLKHPFFWSLEKQLQFFQDVSDRIEKESLDGPIVKQ  316 (432)
T ss_dssp             GSC-----CHHHHHTSTTTCCHHHHHHHHHHHHHHCSCSCSSCHHHHH
T ss_pred             hCC-----CHHHHHhCccccChHHHHHHHHHHHHHhhcccccchHHHH
Confidence            999     66999999999998883         33344455565543

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.81  E-value=6.1e-20  Score=146.16  Aligned_cols=140  Identities=21%  Similarity=0.298  Sum_probs=99.0

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--------cccccccCCccccccCCCc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--------KILRLLSGRPPFCVMNDPM   75 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--------~~~~~~~gt~~y~a~~~P~   75 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.....++|+|||++......        ......+||+.|+|   | 
T Consensus       115 ~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a---P-  190 (316)
T 2ac3_A          115 VVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMA---P-  190 (316)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCC---H-
T ss_pred             HHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccC---h-
Confidence            3478999999999998     89999999987643334899999998765422        12234579999999   9 


Q ss_pred             ccccchhc-----cCcce--------------eccCCCCCCCCC---------------hHHHHHHHHhcCCCccCCC--
Q psy3184          76 QTYNMIIN-----VGIDN--------------IFSRPPFCVMND---------------PMQTYNMIINVGIDKIPFP--  119 (185)
Q Consensus        76 ~~~E~~~~-----~~~~~--------------l~g~~Pf~~~~~---------------~~~~~~~i~~~~~~~~~~p--  119 (185)
                         |++..     ..|+.              ++|..||. +.+               ...+...+. .+  ...+|  
T Consensus       191 ---E~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~--~~~~~~~  263 (316)
T 2ac3_A          191 ---EVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFV-GRCGSDCGWDRGEACPACQNMLFESIQ-EG--KYEFPDK  263 (316)
T ss_dssp             ---HHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCC-CCCCSCSCC----CCHHHHHHHHHHHH-HC--CCCCCHH
T ss_pred             ---HHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCc-ccccccccccccccchhHHHHHHHHHh-cc--CcccCch
Confidence               87753     22332              89999997 543               234555665 23  45555  


Q ss_pred             --CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         120 --KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       120 --~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                        ..++.++++||.+||..||.+||     ++.++++||||++..+.
T Consensus       264 ~~~~~~~~~~~li~~~L~~dP~~Rp-----s~~e~l~hp~~~~~~~~  305 (316)
T 2ac3_A          264 DWAHISCAAKDLISKLLVRDAKQRL-----SAAQVLQHPWVQGCAPE  305 (316)
T ss_dssp             HHTTSCHHHHHHHHHHSCSSTTTSC-----CHHHHHHSTTCC-----
T ss_pred             hcccCCHHHHHHHHHHhhCChhhCC-----CHHHHhcChhhcCCCCc
Confidence              36899999999999999999999     66999999999987665

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.81  E-value=6.6e-20  Score=143.43  Aligned_cols=134  Identities=25%  Similarity=0.432  Sum_probs=109.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.||+|||++     ||||+||++..+.....++|+|||.+.............||+.|+|   |    |++.+.
T Consensus       111 i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~a---P----E~~~~~  183 (277)
T 3f3z_A          111 IMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVS---P----QVLEGL  183 (277)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCBCCCCSCTTTCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccchhccCCCCCccC---h----HHhccc
Confidence            478999999999998     8999999995433333599999999988776666677889999999   9    776543


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCC----CCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK----HVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~----~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                       ++.              ++|..||. +.+..+....+. .+  ...+|.    .+++++.+||.+||..||.+||    
T Consensus       184 -~~~~~Di~slG~~l~~l~~g~~p~~-~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~----  254 (277)
T 3f3z_A          184 -YGPECDEWSAGVMMYVLLCGYPPFS-APTDSEVMLKIR-EG--TFTFPEKDWLNVSPQAESLIRRLLTKSPKQRI----  254 (277)
T ss_dssp             -BCTTHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HC--CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSC----
T ss_pred             -CCchhhehhHHHHHHHHHHCCCCCC-CCCHHHHHHHHH-hC--CCCCCchhhhcCCHHHHHHHHHHccCChhhCc----
Confidence             333              88999999 888888887777 33  455553    6899999999999999999999    


Q ss_pred             CChhhhhcCCCCCC
Q psy3184         147 GGIVDIKKHKWFQG  160 (185)
Q Consensus       147 ~~~~~ll~hp~f~~  160 (185)
                       ++.++++||||+.
T Consensus       255 -s~~~~l~h~~~~~  267 (277)
T 3f3z_A          255 -TSLQALEHEWFEK  267 (277)
T ss_dssp             -CHHHHTTSHHHHH
T ss_pred             -CHHHHhcCHHHhc
Confidence             6699999999964

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.81  E-value=7.2e-20  Score=149.49  Aligned_cols=132  Identities=23%  Similarity=0.397  Sum_probs=108.4

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||.|||+.     |+||+||+++.+.   .++++|||++..+.........+||+.|+|   |    |++.+
T Consensus       204 ~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~---~ikl~DfG~~~~~~~~~~~~~~~gt~~y~a---P----E~~~~  273 (365)
T 2y7j_A          204 SIMRSLLEAVSFLHANNIVHRDLKPENILLDDNM---QIRLSDFGFSCHLEPGEKLRELCGTPGYLA---P----EILKC  273 (365)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC---CEEECCCTTCEECCTTCCBCCCCSCGGGCC---H----HHHHH
T ss_pred             HHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCC---CEEEEecCcccccCCCcccccCCCCCCccC---h----hhccc
Confidence            3477999999999998     8999999998853   399999999988876666677899999999   9    77653


Q ss_pred             c------Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcC
Q psy3184          84 V------GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        84 ~------~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~  139 (185)
                      .      .|+.              ++|..||. +.+.......+. .+  ...++    ..++.++.+||.+||..||.
T Consensus       274 ~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~-~~~~~~~~~~i~-~~--~~~~~~~~~~~~~~~~~~li~~~L~~dP~  349 (365)
T 2y7j_A          274 SMDETHPGYGKEVDLWACGVILFTLLAGSPPFW-HRRQILMLRMIM-EG--QYQFSSPEWDDRSSTVKDLISRLLQVDPE  349 (365)
T ss_dssp             TTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HT--CCCCCHHHHSSSCHHHHHHHHHHSCSSTT
T ss_pred             cccccCcCCCchhhHHhHHHHHHHHHHCCCCCC-CCCHHHHHHHHH-hC--CCCCCCcccccCCHHHHHHHHHHcCCChh
Confidence            2      2332              89999999 777777777777 33  33333    46899999999999999999


Q ss_pred             cccCCCCCChhhhhcCCCCC
Q psy3184         140 ERLGYQRGGIVDIKKHKWFQ  159 (185)
Q Consensus       140 ~R~~~~~~~~~~ll~hp~f~  159 (185)
                      +||     ++.++++||||+
T Consensus       350 ~Rp-----s~~ell~hp~f~  364 (365)
T 2y7j_A          350 ARL-----TAEQALQHPFFE  364 (365)
T ss_dssp             TSC-----CHHHHHHSGGGC
T ss_pred             HCc-----CHHHHhcCcccC
Confidence            999     669999999996

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.81  E-value=4.4e-20  Score=144.51  Aligned_cols=134  Identities=19%  Similarity=0.334  Sum_probs=86.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||++     ||+|+||+++.+.   .++|+|||.+...... ......+||+.|+|   |    |++..
T Consensus       117 ~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  186 (278)
T 3cok_A          117 FMHQIITGMLYLHSHGILHRDLTLSNLLLTRNM---NIKIADFGLATQLKMPHEKHYTLCGTPNYIS---P----EIATR  186 (278)
T ss_dssp             HHHHHHHHHHHHHHTTEECSSCCGGGEEECTTC---CEEECCCTTCEECC------------------------------
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCC---CEEEEeecceeeccCCCCcceeccCCCCcCC---c----chhcC
Confidence            478999999999998     8999999998753   4999999999876533 23345789999999   9    87765


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. ..+.......+.   ......|..++.++.+||.+||..||.+||     ++
T Consensus       187 ~~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp-----s~  257 (278)
T 3cok_A          187 SAHGLESDVWSLGCMFYTLLIGRPPFD-TDTVKNTLNKVV---LADYEMPSFLSIEAKDLIHQLLRRNPADRL-----SL  257 (278)
T ss_dssp             -----CTHHHHHHHHHHHHHHSSCSSC-CCSCC-----CC---SSCCCCCTTSCHHHHHHHHHHSCSSGGGSC-----CH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHh---hcccCCccccCHHHHHHHHHHcccCHhhCC-----CH
Confidence            54443              89999998 666666655554   235677888999999999999999999999     66


Q ss_pred             hhhhcCCCCCCCC
Q psy3184         150 VDIKKHKWFQGFD  162 (185)
Q Consensus       150 ~~ll~hp~f~~~~  162 (185)
                      .++++||||....
T Consensus       258 ~~~l~h~~~~~~~  270 (278)
T 3cok_A          258 SSVLDHPFMSRNS  270 (278)
T ss_dssp             HHHTTSTTTC---
T ss_pred             HHHhcCccccCCC
Confidence            9999999997643

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.81  E-value=9.4e-20  Score=149.45  Aligned_cols=139  Identities=15%  Similarity=0.273  Sum_probs=109.2

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||.|||++     ||||+||+++... + .++|+|||.++...........+||+.|+|   |    |++.+
T Consensus       145 ~i~~qi~~aL~~LH~~gi~H~Dikp~Nil~~~~~-~-~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~a---P----E~~~~  215 (383)
T 3eb0_A          145 IYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKD-N-TLKLCDFGSAKKLIPSEPSVAYICSRFYRA---P----ELMLG  215 (383)
T ss_dssp             HHHHHHHHHHHHHHTTTEECSCCCGGGEEEETTT-T-EEEECCCTTCEECCTTSCCCCCCCCSSCCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHHCcCccCccCHHHEEEcCCC-C-cEEEEECCCCcccCCCCCCcCcccCCCccC---H----HHhcC
Confidence            3478999999999998     8999999997532 2 599999999998766666667889999999   9    87765


Q ss_pred             cC-cce--------------eccCCCCCCCCChHHHHHHHHhc-CC-------------Ccc------------CCCCCC
Q psy3184          84 VG-IDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI-------------DKI------------PFPKHV  122 (185)
Q Consensus        84 ~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~-------------~~~------------~~p~~~  122 (185)
                      .. |+.              ++|.+||. +.+..+.+..+... |.             ...            .+|..+
T Consensus       216 ~~~~~~~~DiwslG~il~ell~g~~pf~-~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (383)
T 3eb0_A          216 ATEYTPSIDLWSIGCVFGELILGKPLFS-GETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGT  294 (383)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTC
T ss_pred             CCCCCcchhhhhHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCC
Confidence            33 444              89999999 77776666555411 00             001            145568


Q ss_pred             CHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCC
Q psy3184         123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       123 s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~  162 (185)
                      +.++.+||.+||..||.+||     ++.++++||||+.+.
T Consensus       295 ~~~~~~li~~~L~~dP~~R~-----t~~e~l~hp~f~~~~  329 (383)
T 3eb0_A          295 PSLAIDLLEQILRYEPDLRI-----NPYEAMAHPFFDHLR  329 (383)
T ss_dssp             CHHHHHHHHHHCCSSGGGSC-----CHHHHHTSGGGHHHH
T ss_pred             CHHHHHHHHHHccCChhhCC-----CHHHHhcCHHHHHHH
Confidence            99999999999999999999     669999999997653

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.81  E-value=1.8e-19  Score=142.26  Aligned_cols=134  Identities=21%  Similarity=0.341  Sum_probs=112.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||+.     ||+|+||+++.+.   .++|+|||.+...... .......||+.|+|   |    |++..
T Consensus       120 i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  189 (294)
T 2rku_A          120 YLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDL---EVKIGDFGLATKVEYDGERKKVLCGTPNYIA---P----EVLSK  189 (294)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC---CEEECCCTTCEECCSTTCCBCCCCSCCSSCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHCCccccCCChHhEEEcCCC---CEEEEeccCceecccCccccccccCCCCcCC---c----chhcc
Confidence            478999999999998     8999999998853   3999999999877543 33445789999999   9    88776


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. +.+..+.+..+.   .....+|..++.++.++|.+||..||.+||     ++
T Consensus       190 ~~~~~~~Di~slG~~l~~l~~g~~p~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~  260 (294)
T 2rku_A          190 KGHSFEVDVWSIGCIMYTLLVGKPPFE-TSCLKETYLRIK---KNEYSIPKHINPVAASLIQKMLQTDPTARP-----TI  260 (294)
T ss_dssp             SCBCTHHHHHHHHHHHHHHHHSSCTTC-CSSHHHHHHHHH---TTCCCCCTTSCHHHHHHHHHHTCSSGGGSC-----CG
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHh---hccCCCccccCHHHHHHHHHHcccChhhCc-----CH
Confidence            65553              89999999 888777777777   346778889999999999999999999999     55


Q ss_pred             hhhhcCCCCCCCC
Q psy3184         150 VDIKKHKWFQGFD  162 (185)
Q Consensus       150 ~~ll~hp~f~~~~  162 (185)
                      .++++||||+...
T Consensus       261 ~~ll~~~~~~~~~  273 (294)
T 2rku_A          261 NELLNDEFFTSGY  273 (294)
T ss_dssp             GGGGGSHHHHTSC
T ss_pred             HHHhhChheecCC
Confidence            9999999997543

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.81  E-value=4.2e-20  Score=148.26  Aligned_cols=140  Identities=15%  Similarity=0.151  Sum_probs=101.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.   .++|+|||.+...... ......+||+.|+|   |    |++.+
T Consensus       105 ~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~a---P----E~~~~  174 (324)
T 3mtl_A          105 FLFQLLRGLAYCHRQKVLHRDLKPQNLLINERG---ELKLADFGLARAKSIPTKTYDNEVVTLWYRP---P----DILLG  174 (324)
T ss_dssp             HHHHHHHHHHHHHHTTEEESSCCGGGEEECTTC---CEEECSSSEEECC------------CGGGCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHCCccCCCcCHHHEEECCCC---CEEEccCcccccccCCccccccccCcccccC---h----hhhcC
Confidence            467999999999998     8999999998863   4999999999765432 33445688999999   9    87765


Q ss_pred             -cCcce--------------eccCCCCCCCCChHHHHHHHHhcCC--CccC--------------C-----------CCC
Q psy3184          84 -VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI--DKIP--------------F-----------PKH  121 (185)
Q Consensus        84 -~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~--~~~~--------------~-----------p~~  121 (185)
                       ..|+.              ++|..||. +.+..+....+.....  ....              +           +..
T Consensus       175 ~~~~~~~~DiwslG~il~~l~~g~~pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (324)
T 3mtl_A          175 STDYSTQIDMWGVGCIFYEMATGRPLFP-GSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPR  253 (324)
T ss_dssp             CCCCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTT
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCC
Confidence             33443              89999999 8877776665542100  0001              1           124


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhh
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                      +++++.+||.+||..||.+||     +++++++||||.+.....
T Consensus       254 ~~~~~~~li~~~L~~dP~~R~-----t~~e~l~hp~f~~~~~~~  292 (324)
T 3mtl_A          254 LDSDGADLLTKLLQFEGRNRI-----SAEDAMKHPFFLSLGERI  292 (324)
T ss_dssp             SCHHHHHHHHHHSCSSGGGSC-----CHHHHTTSGGGGGGCSTT
T ss_pred             CCHHHHHHHHHHcCcCcccCC-----CHHHHhcChhhhhccccc
Confidence            789999999999999999999     669999999998765543

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.81  E-value=4.3e-20  Score=144.29  Aligned_cols=132  Identities=21%  Similarity=0.366  Sum_probs=100.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||++     ||+|+||+++.+.   .++|+|||.+............+|++.|+|   |    |++.+.
T Consensus       116 ~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~---~~~l~dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  185 (276)
T 2h6d_A          116 LFQQILSAVDYCHRHMVVHRDLKPENVLLDAHM---NAKIADFGLSNMMSDGEFLRTSCGSPNYAA---P----EVISGR  185 (276)
T ss_dssp             HHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTS---CEEECCCCGGGCCCC-------------CC---T----GGGTTS
T ss_pred             HHHHHHHHHHHHHHCCCccCCCChhhEEECCCC---CEEEeecccccccCCCcceecccCCccccC---H----HHHcCC
Confidence            468999999999997     8899999998753   499999999987655555556789999999   9    887765


Q ss_pred             Ccc-e--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GID-N--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~-~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .+. .              ++|..||. ..+.......+. .  ....+|..++.++.++|.+||..||.+||     ++
T Consensus       186 ~~~~~~~Di~slG~~l~~l~~g~~p~~-~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-----s~  256 (276)
T 2h6d_A          186 LYAGPEVDIWSCGVILYALLCGTLPFD-DEHVPTLFKKIR-G--GVFYIPEYLNRSVATLLMHMLQVDPLKRA-----TI  256 (276)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-H--CCCCCCTTSCHHHHHHHHHHTCSSGGGSC-----CH
T ss_pred             CCCCccchHHHHHHHHHHHHhCCCCCC-CCcHHHHHHHhh-c--CcccCchhcCHHHHHHHHHHccCChhhCC-----CH
Confidence            442 2              89999998 888888888777 3  35667888999999999999999999999     66


Q ss_pred             hhhhcCCCCCC
Q psy3184         150 VDIKKHKWFQG  160 (185)
Q Consensus       150 ~~ll~hp~f~~  160 (185)
                      .++++||||+.
T Consensus       257 ~~~l~h~~~~~  267 (276)
T 2h6d_A          257 KDIREHEWFKQ  267 (276)
T ss_dssp             HHHHHSHHHHT
T ss_pred             HHHHhChhhcc
Confidence            99999999964

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.81  E-value=4.5e-20  Score=145.50  Aligned_cols=136  Identities=15%  Similarity=0.202  Sum_probs=99.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.+...... ......+||+.|+|   |    |++.+
T Consensus       105 ~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~a---P----E~~~~  174 (288)
T 1ob3_A          105 FLLQLLNGIAYCHDRRVLHRDLKPQNLLINREG---ELKIADFGLARAFGIPVRKYTHEIVTLWYRA---P----DVLMG  174 (288)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTS---CEEECCTTHHHHHCC---------CCCTTCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCC---CEEEeECccccccCccccccccccccccccC---c----hheeC
Confidence            468999999999998     8899999998853   4999999998765432 23345688999999   9    87765


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CC-Cc------------------------cCCCCCC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI-DK------------------------IPFPKHV  122 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~-~~------------------------~~~p~~~  122 (185)
                      . .|+.              ++|.+||. +.+..+....+... +. ..                        ..+...+
T Consensus       175 ~~~~~~~~DiwslG~il~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (288)
T 1ob3_A          175 SKKYSTTIDIWSVGCIFAEMVNGTPLFP-GVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGL  253 (288)
T ss_dssp             CCSCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSC
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhc
Confidence            3 3443              89999998 77766665554311 00 00                        0112357


Q ss_pred             CHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       123 s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      +.++.+||.+||..||.+||     ++.++++||||++.
T Consensus       254 ~~~~~~li~~~L~~dP~~Rp-----t~~e~l~hp~f~~~  287 (288)
T 1ob3_A          254 DESGIDLLSKMLKLDPNQRI-----TAKQALEHAYFKEN  287 (288)
T ss_dssp             CHHHHHHHHHHTCSSTTTSC-----CHHHHHTSGGGGC-
T ss_pred             CHHHHHHHHHHcCCCcccCC-----CHHHHhcCcchhhc
Confidence            99999999999999999999     66999999999864

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.81  E-value=2.8e-19  Score=146.14  Aligned_cols=151  Identities=15%  Similarity=0.153  Sum_probs=108.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++....  .....+||+.|+|   |    |++.+ 
T Consensus       149 i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~---~~kL~Dfg~a~~~~~--~~~~~~~t~~y~a---P----E~~~~~  216 (371)
T 4exu_A          149 LVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDC---ELKILDFGLARHADA--EMTGYVVTRWYRA---P----EVILSW  216 (371)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC---CEEECSTTCC----------CTTCCCTTSC---H----HHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCC---CEEEEecCccccccc--CcCCcccCccccC---H----HHhcCC
Confidence            477999999999998     8899999998863   399999999976543  3445789999999   9    87765 


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCc----------------------------cCCCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK----------------------------IPFPKH  121 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~----------------------------~~~p~~  121 (185)
                      ..|+.              ++|..||. +.+..+....+......+                            ...+..
T Consensus       217 ~~~~~~~DiwslG~il~el~~g~~pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (371)
T 4exu_A          217 MHYNQTVDIWSVGCIMAEMLTGKTLFK-GKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPR  295 (371)
T ss_dssp             SCCCTTHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTT
T ss_pred             CCCCcHHhHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccc
Confidence            34443              89999999 777766665554110000                            011235


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVA  179 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~  179 (185)
                      +++++.+||.+||..||.+||     ++.++++||||+......... ....||.+.+
T Consensus       296 ~~~~~~~li~~~L~~dP~~Rp-----t~~ell~hp~f~~~~~~~~~~-~~~~~~~~~~  347 (371)
T 4exu_A          296 ASPQAADLLEKMLELDVDKRL-----TAAQALTHPFFEPFRDPEEET-EAQQPFDDSL  347 (371)
T ss_dssp             SCHHHHHHHHHHSCSCTTTSC-----CHHHHHTSGGGTTTCCGGGCC-CCSSCCCCTT
T ss_pred             cChHHHHHHHHHCCCChhhcC-----CHHHHhcCcccccCCCccccc-ccccCcCcch
Confidence            799999999999999999999     669999999999876664332 3345665544

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.81  E-value=1.1e-19  Score=147.07  Aligned_cols=140  Identities=17%  Similarity=0.127  Sum_probs=105.4

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-----cccccccCCccccccCCCcccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-----KILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-----~~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++.....     ......+||+.|+|   |    
T Consensus       128 ~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~a---P----  197 (351)
T 3mi9_A          128 RVMQMLLNGLYYIHRNKILHRDMKAANVLITRDG---VLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRP---P----  197 (351)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS---CEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCC---H----
T ss_pred             HHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCC---CEEEccchhcccccccccccccccCCcccccCccC---c----
Confidence            3478999999999998     8999999998853   4999999999876532     23345689999999   9    


Q ss_pred             cchhc-cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CC-CccCCCC---------------------
Q psy3184          79 NMIIN-VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI-DKIPFPK---------------------  120 (185)
Q Consensus        79 E~~~~-~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~-~~~~~p~---------------------  120 (185)
                      |++.+ ..|+.              ++|.+||. +.+.......+... +. ....+|.                     
T Consensus       198 E~~~~~~~~~~~~DiwslG~il~ell~g~~pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
T 3mi9_A          198 ELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQ-GNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVK  276 (351)
T ss_dssp             HHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHH
T ss_pred             hhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHH
Confidence            87765 33443              89999999 87777766655411 10 1111111                     


Q ss_pred             ------CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         121 ------HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       121 ------~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                            ..++++.+||.+||..||.+||     ++.++++||||+...+.
T Consensus       277 ~~~~~~~~~~~~~~li~~~L~~dP~~R~-----t~~e~l~hp~f~~~~~~  321 (351)
T 3mi9_A          277 DRLKAYVRDPYALDLIDKLLVLDPAQRI-----DSDDALNHDFFWSDPMP  321 (351)
T ss_dssp             HHHHHHHCCHHHHHHHHHHSCSSGGGSC-----CHHHHHTSGGGGSSSCC
T ss_pred             HHhhhccCChHHHHHHHHHhcCChhhCC-----CHHHHhCCCCcCCCCCc
Confidence                  0278899999999999999999     66999999999765544

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.81  E-value=1.3e-19  Score=143.54  Aligned_cols=136  Identities=22%  Similarity=0.328  Sum_probs=111.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec---CcccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD---GKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~---~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ...||+.||+|||++     ||||+||+++.+.   .++|+|||.+.....   ........||+.|+|   |    |++
T Consensus       114 ~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  183 (305)
T 2wtk_C          114 YFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGG---TLKISALGVAEALHPFAADDTCRTSQGSPAFQP---P----EIA  183 (305)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC---CEEECCCTTCEECCTTCSSCEECCCCSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHCCeeecCCCcccEEEcCCC---cEEeeccccccccCccccccccccCCCCCCCcC---h----hhc
Confidence            367999999999998     8999999998753   499999999987643   223345679999999   9    877


Q ss_pred             hccCc--ce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          82 INVGI--DN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        82 ~~~~~--~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      .+...  +.              ++|..||. +.+..+....+. .  ....+|..+++++.+||.+||..||.+||   
T Consensus       184 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~i~-~--~~~~~~~~~~~~l~~li~~~l~~dp~~Rp---  256 (305)
T 2wtk_C          184 NGLDTFSGFKVDIWSAGVTLYNITTGLYPFE-GDNIYKLFENIG-K--GSYAIPGDCGPPLSDLLKGMLEYEPAKRF---  256 (305)
T ss_dssp             TCCSCEESHHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHH-H--CCCCCCSSSCHHHHHHHHHHTCSSTTTSC---
T ss_pred             cCcccCCcchhhHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHh-c--CCCCCCCccCHHHHHHHHHHccCChhhCC---
Confidence            65321  21              89999999 888888888887 3  36778888999999999999999999999   


Q ss_pred             CCChhhhhcCCCCCCCChh
Q psy3184         146 RGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~~~~~  164 (185)
                        ++.++++||||+.....
T Consensus       257 --s~~~ll~~~~~~~~~~~  273 (305)
T 2wtk_C          257 --SIRQIRQHSWFRKKHPP  273 (305)
T ss_dssp             --CHHHHHHSHHHHSCCCC
T ss_pred             --CHHHHhcCcccccCCCC
Confidence              66999999999876544

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.81  E-value=8.6e-20  Score=150.41  Aligned_cols=136  Identities=21%  Similarity=0.326  Sum_probs=103.5

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ..+.||+.||+|||++     ||||+||+++.   + .++|+|||+++.+....   .....+||+.|+|   |    |+
T Consensus       159 ~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~---~-~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~a---P----E~  227 (390)
T 2zmd_A          159 SYWKNMLEAVHTIHQHGIVHSDLKPANFLIVD---G-MLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMP---P----EA  227 (390)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCCCCGGGEEESS---S-CEEECCCSSSCCC---------CCSCCCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHHHCCeeecCCCHHHEEEEC---C-eEEEEecCccccccCCCccccCCCCCcCCCccC---h----HH
Confidence            3468999999999998     89999999964   2 49999999998664432   2345789999999   9    77


Q ss_pred             hhc-----------cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhh
Q psy3184          81 IIN-----------VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCK  135 (185)
Q Consensus        81 ~~~-----------~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~  135 (185)
                      +..           ..|+.              ++|..||....+....+..+. .+.....+|...+.++.+||.+||.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~  306 (390)
T 2zmd_A          228 IKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAII-DPNHEIEFPDIPEKDLQDVLKCCLK  306 (390)
T ss_dssp             HHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHH-CTTSCCCCCCCSCHHHHHHHHHHTC
T ss_pred             hhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHh-CccccCCCCccchHHHHHHHHHHcc
Confidence            654           12332              899999983334445566666 3334566778889999999999999


Q ss_pred             cCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         136 ESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       136 ~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      .||.+||     ++.++++||||+..
T Consensus       307 ~dP~~Rp-----s~~ell~hp~~~~~  327 (390)
T 2zmd_A          307 RDPKQRI-----SIPELLAHPYVQIQ  327 (390)
T ss_dssp             SSTTTSC-----CHHHHHTSHHHHSC
T ss_pred             cChhhCC-----CHHHHhhCcCcccc
Confidence            9999999     66999999999654

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.80  E-value=5e-20  Score=151.02  Aligned_cols=139  Identities=13%  Similarity=0.104  Sum_probs=102.7

Q ss_pred             ccHHHHHHHHHHHhh--c-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184           9 LDTLQVKEMVESMHQ--A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~--~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ..+.||+.||.|||+  .     ||||+||++..+..+ .++|+|||.+.....  .....+||+.|+|   |    |++
T Consensus       161 ~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~-~~kL~DFG~a~~~~~--~~~~~~~t~~y~a---P----E~~  230 (382)
T 2vx3_A          161 KFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRS-AIKIVDFGSSCQLGQ--RIYQYIQSRFYRS---P----EVL  230 (382)
T ss_dssp             HHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSC-CEEECCCTTCEETTC--CCCSSCSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCC-cEEEEeccCceeccc--ccccccCCccccC---h----HHH
Confidence            457899999999994  2     899999999764334 499999999986633  3456789999999   9    888


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCcc---------------CCCC------------
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKI---------------PFPK------------  120 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~---------------~~p~------------  120 (185)
                      .+..|+.              ++|.+||. +.+..+.+..+......++               .+|.            
T Consensus       231 ~~~~~~~~~DiwSlG~il~elltg~~pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (382)
T 2vx3_A          231 LGMPYDLAIDMWSLGCILVEMHTGEPLFS-GANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGK  309 (382)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCCCTTC
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCCHHHHHhhHHHHHHHHhccccccccccccccc
Confidence            7766665              89999999 8877777666552100000               0000            


Q ss_pred             ------C----------------------------CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCCh
Q psy3184         121 ------H----------------------------VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW  163 (185)
Q Consensus       121 ------~----------------------------~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~  163 (185)
                            .                            .++++++||.+||..||.+||     ++.++++||||+...+
T Consensus       310 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rp-----ta~e~L~hp~f~~~~~  381 (382)
T 2vx3_A          310 REYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRI-----QPYYALQHSFFKKTAD  381 (382)
T ss_dssp             CCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSC-----CHHHHTTSGGGCC---
T ss_pred             cccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhhCC-----CHHHHhcCcccccCCC
Confidence                  0                            014789999999999999999     6699999999987543

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.80  E-value=7.1e-20  Score=143.51  Aligned_cols=131  Identities=24%  Similarity=0.360  Sum_probs=106.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.   .++|+|||.+...... ......|++.|+|   |    |++.+.
T Consensus       114 ~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~---~~~l~Dfg~~~~~~~~-~~~~~~~~~~y~a---P----E~~~~~  182 (279)
T 3fdn_A          114 YITELANALSYCHSKRVIHRDIKPENLLLGSAG---ELKIADFGWSVHAPSS-RRTDLCGTLDYLP---P----EMIEGR  182 (279)
T ss_dssp             HHHHHHHHHHHHHTTTCEECCCCGGGEEECTTS---CEEECSCCEESCC---------CCCCTTCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHhCCEecccCChHhEEEcCCC---CEEEEeccccccCCcc-cccccCCCCCccC---H----hHhccC
Confidence            468999999999998     8899999998753   4999999988644332 3345689999999   9    887765


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|..||. +.+..+....+. .  ....+|..++.++.+||.+||..||.+||     ++.
T Consensus       183 ~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~  253 (279)
T 3fdn_A          183 MHDEKVDLWSLGVLCYEFLVGKPPFE-ANTYQETYKRIS-R--VEFTFPDFVTEGARDLISRLLKHNPSQRP-----MLR  253 (279)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHSSCTTC-CSSHHHHHHHHH-H--TCCCCCTTSCHHHHHHHHHHCCSSGGGSC-----CHH
T ss_pred             CCCccchhHhHHHHHHHHHHCCCCCC-CCcHHHHHHHHH-h--CCCCCCCcCCHHHHHHHHHHhccChhhCC-----CHH
Confidence            5543              89999999 888888888887 2  36778888999999999999999999999     669


Q ss_pred             hhhcCCCCCC
Q psy3184         151 DIKKHKWFQG  160 (185)
Q Consensus       151 ~ll~hp~f~~  160 (185)
                      ++++||||+.
T Consensus       254 e~l~h~~~~~  263 (279)
T 3fdn_A          254 EVLEHPWITA  263 (279)
T ss_dssp             HHHHCHHHHH
T ss_pred             HHhhCccccC
Confidence            9999999964

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.80  E-value=8.3e-20  Score=145.79  Aligned_cols=130  Identities=9%  Similarity=0.090  Sum_probs=97.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||+.     ||||+||+++.+.   +++|+|||.+.............||+.|+|   |    |++.+ 
T Consensus       162 i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~---~~kl~DFG~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~-  230 (311)
T 3p1a_A          162 YLRDTLLALAHLHSQGLVHLDVKPANIFLGPRG---RCKLGDFGLLVELGTAGAGEVQEGDPRYMA---P----ELLQG-  230 (311)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEECGGG---CEEECCCTTCEECC------CCCCCGGGCC---G----GGGGT-
T ss_pred             HHHHHHHHHHHHHHCCEecCCCCHHHEEECCCC---CEEEccceeeeecccCCCCcccCCCccccC---H----hHhcC-
Confidence            467999999999998     8999999998753   499999999987766555566789999999   9    77664 


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .|+.              ++|..||. +.   .....+. .+..+..++..+++++.+||.+||..||.+||     ++.
T Consensus       231 ~~~~~~DiwslG~il~el~~g~~~~~-~~---~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp-----t~~  300 (311)
T 3p1a_A          231 SYGTAADVFSLGLTILEVACNMELPH-GG---EGWQQLR-QGYLPPEFTAGLSSELRSVLVMMLEPDPKLRA-----TAE  300 (311)
T ss_dssp             CCSTHHHHHHHHHHHHHHHHTCCCCS-SH---HHHHHHT-TTCCCHHHHTTSCHHHHHHHHHHSCSSTTTSC-----CHH
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCC-Cc---cHHHHHh-ccCCCcccccCCCHHHHHHHHHHcCCChhhCc-----CHH
Confidence            3443              67866665 32   2233333 22234445567899999999999999999999     669


Q ss_pred             hhhcCCCCCC
Q psy3184         151 DIKKHKWFQG  160 (185)
Q Consensus       151 ~ll~hp~f~~  160 (185)
                      ++++||||+.
T Consensus       301 ell~hp~~~~  310 (311)
T 3p1a_A          301 ALLALPVLRQ  310 (311)
T ss_dssp             HHHTSGGGSC
T ss_pred             HHHhCccccC
Confidence            9999999974

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.80  E-value=8.5e-20  Score=146.46  Aligned_cols=158  Identities=10%  Similarity=0.080  Sum_probs=103.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++......   ......|++.|+|   |    |++
T Consensus       120 ~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  189 (325)
T 3kex_A          120 WGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPS---QVQVADFGVADLLPPDDKQLLYSEAKTPIKWMA---L----ESI  189 (325)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSS---CEEECSCSGGGGSCCCTTCCC-----CCTTTSC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCccchheEEECCCC---eEEECCCCcccccCcccccccccCCCCcccccC---h----HHh
Confidence            368999999999998     8899999998753   49999999998664432   2344678889999   9    888


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....|+.              ++ |..||. +.+..+....+. .+ .....|..++.++.++|.+||..||.+||++  
T Consensus       190 ~~~~~~~~~Di~slG~~l~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~--  264 (325)
T 3kex_A          190 HFGKYTHQSDVWSYGVTVWELMTFGAEPYA-GLRLAEVPDLLE-KG-ERLAQPQICTIDVYMVMVKCWMIDENIRPTF--  264 (325)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TSCTTHHHHHHH-TT-CBCCCCTTBCTTTTHHHHHHTCSCTTTSCCH--
T ss_pred             ccCCCChhhHhHHhHHHHHHHHhCCCCCcc-ccCHHHHHHHHH-cC-CCCCCCCcCcHHHHHHHHHHcCCChhhCcCH--
Confidence            7666664              77 999999 777777777776 22 4667777889999999999999999999954  


Q ss_pred             CChhhhh-------------------------cCCCCCCCChhhhhcccCCCCccCCCCCCCCC
Q psy3184         147 GGIVDIK-------------------------KHKWFQGFDWDGLRNQTLTPPIIPVASILRDE  185 (185)
Q Consensus       147 ~~~~~ll-------------------------~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~~  185 (185)
                         .+++                         .+|.+.++.|..+....+.|||.|+...+.||
T Consensus       265 ---~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~d~e~e~  325 (325)
T 3kex_A          265 ---KELANEFTRMARDPPRYLVIKRESGPGIAPGPEPHGLTNKKLEEVELEPELDLDLDLEAEE  325 (325)
T ss_dssp             ---HHHHHHHHHHTTSHHHHBCCCSSSSCCCBCCCCCCC-------------------------
T ss_pred             ---HHHHHHHHHHHhcchhhhccccCCCCCCCCCCccccchhhcccccccchhccCCcccccCC
Confidence               5543                         46788999999999999999999988777765

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.80  E-value=1.5e-19  Score=145.67  Aligned_cols=134  Identities=21%  Similarity=0.342  Sum_probs=112.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...||+.||+|||++     ||||+||+++.+.   .++|+|||.+...... ......+||+.|+|   |    |++..
T Consensus       146 i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~~  215 (335)
T 2owb_A          146 YLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDL---EVKIGDFGLATKVEYDGERKKVLCGTPNYIA---P----EVLSK  215 (335)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCGGGEEECTTC---CEEECCCTTCEECCSTTCCBCCCCSCCSSCC---H----HHHHT
T ss_pred             HHHHHHHHHHHHHHCCCEecCCCchhEEEcCCC---CEEEeeccCceecccCcccccccCCCccccC---H----HHhcc
Confidence            468999999999998     8999999998853   3999999999877543 33456789999999   9    88876


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. ..+..+.+..+. .  ....+|..++.++.+||.+||..||.+||     ++
T Consensus       216 ~~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~li~~~l~~dp~~Rp-----s~  286 (335)
T 2owb_A          216 KGHSFEVDVWSIGCIMYTLLVGKPPFE-TSCLKETYLRIK-K--NEYSIPKHINPVAASLIQKMLQTDPTARP-----TI  286 (335)
T ss_dssp             SCBCTHHHHHHHHHHHHHHHHSSCTTC-CSSHHHHHHHHH-H--TCCCCCTTSCHHHHHHHHHHTCSSGGGSC-----CG
T ss_pred             CCCCchhhHHHHHHHHHHHHHCcCCCC-CCCHHHHHHHHh-c--CCCCCCccCCHHHHHHHHHHccCChhHCc-----CH
Confidence            66554              89999999 887777777776 2  36678888999999999999999999999     56


Q ss_pred             hhhhcCCCCCCCC
Q psy3184         150 VDIKKHKWFQGFD  162 (185)
Q Consensus       150 ~~ll~hp~f~~~~  162 (185)
                      .++++||||+...
T Consensus       287 ~ell~~~~~~~~~  299 (335)
T 2owb_A          287 NELLNDEFFTSGY  299 (335)
T ss_dssp             GGGGGSHHHHTSC
T ss_pred             HHHhcCccccCCC
Confidence            9999999997543

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.80  E-value=9.5e-20  Score=147.50  Aligned_cols=141  Identities=16%  Similarity=0.207  Sum_probs=107.5

Q ss_pred             ccHHHHHHHHHHHh--hc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184           9 LDTLQVKEMVESMH--QA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         9 ~~~~qi~~~l~~lH--~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ..+.||+.||.|||  +.     ||||+||+++... + .++|+|||.+............+||+.|+|   |    |++
T Consensus       133 ~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~-~-~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~a---P----E~~  203 (360)
T 3e3p_A          133 VFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEAD-G-TLKLCDFGSAKKLSPSEPNVAYICSRYYRA---P----ELI  203 (360)
T ss_dssp             HHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTT-T-EEEECCCTTCBCCCTTSCCCSTTSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCC-C-cEEEeeCCCceecCCCCCcccccCCcceeC---H----HHH
Confidence            34789999999999  65     8999999998621 2 599999999987766666667789999999   9    877


Q ss_pred             hccC-cce--------------eccCCCCCCCCChHHHHHHHHhcCCCc-----------------------------cC
Q psy3184          82 INVG-IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK-----------------------------IP  117 (185)
Q Consensus        82 ~~~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~-----------------------------~~  117 (185)
                      .+.. |+.              ++|..||. +.+....+..+......+                             ..
T Consensus       204 ~~~~~~~~~~Di~slG~il~ell~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (360)
T 3e3p_A          204 FGNQHYTTAVDIWSVGCIFAEMMLGEPIFR-GDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSD  282 (360)
T ss_dssp             TTCSSCCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTT
T ss_pred             cCCCCCCcHHHHHHHHHHHHHHHhCCCCcC-CCChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccch
Confidence            5433 443              89999999 777776666554110000                             01


Q ss_pred             CCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       118 ~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                      .+...+.++.+||.+||..||.+||     ++.++++||||+.+...
T Consensus       283 ~~~~~~~~~~~li~~~L~~dP~~Rp-----t~~e~l~hp~f~~~~~~  324 (360)
T 3e3p_A          283 HSLKDAKEAYDLLSALLQYLPEERM-----KPYEALCHPYFDELHDP  324 (360)
T ss_dssp             CCCTTHHHHHHHHHHHTCSSGGGSC-----CHHHHTTSGGGGGGGCT
T ss_pred             hhccccHHHHHHHHHHhccCccccC-----CHHHHhcCccccccCCc
Confidence            1123578999999999999999999     66999999999876543

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.80  E-value=7e-20  Score=150.30  Aligned_cols=141  Identities=13%  Similarity=0.204  Sum_probs=99.1

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--------cccccccCCccccccCCCc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--------KILRLLSGRPPFCVMNDPM   75 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--------~~~~~~~gt~~y~a~~~P~   75 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||.+......        ......+||+.|+|   | 
T Consensus       132 ~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a---P-  204 (389)
T 3gni_B          132 YILQGVLKALDYIHHMGYVHRSVKASHILISVDG---KVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLS---P-  204 (389)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC---CEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSC---H-
T ss_pred             HHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCC---CEEEcccccceeeccccccccccccccccccccccccC---H-
Confidence            3467999999999998     8999999998753   4999999987654322        12233589999999   9 


Q ss_pred             ccccchhc--cCcce--------------eccCCCCCCCCChHHHHHHHHhcCC--------------------------
Q psy3184          76 QTYNMIIN--VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI--------------------------  113 (185)
Q Consensus        76 ~~~E~~~~--~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~--------------------------  113 (185)
                         |++.+  ..|+.              ++|..||. +.+..+....+.....                          
T Consensus       205 ---E~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (389)
T 3gni_B          205 ---EVLQQNLQGYDAKSDIYSVGITACELANGHVPFK-DMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSG  280 (389)
T ss_dssp             ---HHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTT-TCCSTTHHHHC-------------------------------
T ss_pred             ---HHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHhcCCCCccccccccccccccccccccccccc
Confidence               88776  34554              89999998 6554443332220000                          


Q ss_pred             -----------------CccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhh
Q psy3184         114 -----------------DKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       114 -----------------~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                                       ....++..+++++.+||.+||..||.+||     ++.++++||||+.+.|..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp-----ta~ell~hp~f~~~~~~~  344 (389)
T 3gni_B          281 LSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARP-----SASTLLNHSFFKQIKRRA  344 (389)
T ss_dssp             -------------------------CCHHHHHHHHHHTCSCTTTSC-----CHHHHTTSGGGGGC---C
T ss_pred             cccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCC-----CHHHHhcCHHHHHHhhcc
Confidence                             01123456899999999999999999999     669999999999887653

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.80  E-value=1.4e-19  Score=146.85  Aligned_cols=139  Identities=12%  Similarity=0.142  Sum_probs=97.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.+............+||+.|+|   |    |++.+ 
T Consensus       139 ~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~a---P----E~~~~~  208 (362)
T 3pg1_A          139 FMYHILLGLHVLHEAGVVHRDLHPGNILLADNN---DITICDFNLAREDTADANKTHYVTHRWYRA---P----ELVMQF  208 (362)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC---CEEECCTTC---------------CGGGCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHHCcCEecCCChHHEEEcCCC---CEEEEecCcccccccccccceecccceecC---c----HHhcCC
Confidence            478999999999998     8899999998753   499999999986655555566789999999   9    87765 


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCC---------------------c--------cCCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID---------------------K--------IPFPK  120 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~---------------------~--------~~~p~  120 (185)
                      ..++.              ++|..||. +.+..+....+......                     .        ...+.
T Consensus       209 ~~~~~~~DiwslG~il~~l~~g~~pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (362)
T 3pg1_A          209 KGFTKLVDMWSAGCVMAEMFNRKALFR-GSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVP  287 (362)
T ss_dssp             TTCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHST
T ss_pred             CCCCcHhHHHhHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCC
Confidence            34443              89999999 77766666555410000                     0        01123


Q ss_pred             CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       121 ~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                      .+++++.+||.+||..||.+||     ++.++++||||+.+...
T Consensus       288 ~~~~~~~~li~~~L~~dP~~Rp-----t~~ell~hp~f~~~~~~  326 (362)
T 3pg1_A          288 TADPVALDLIAKMLEFNPQRRI-----STEQALRHPYFESLFDP  326 (362)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSC-----CHHHHHTSGGGTTTCCG
T ss_pred             CCCHHHHHHHHHHhcCChhhCC-----CHHHHHcCchhhhccCc
Confidence            5689999999999999999999     66999999999876433

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.80  E-value=1.3e-19  Score=146.41  Aligned_cols=135  Identities=21%  Similarity=0.336  Sum_probs=100.8

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ..+.||+.||+|||++     ||||+||+++.+    .++|+|||+++......   .....+||+.|+|   |    |+
T Consensus       112 ~i~~qi~~al~~lH~~~iiHrDikp~NIll~~~----~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~a---P----E~  180 (343)
T 3dbq_A          112 SYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG----MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMP---P----EA  180 (343)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETT----EEEECCCSSSCCC------------CCCCSSCC---H----HH
T ss_pred             HHHHHHHHHHHHHHhCCeecCCCCcceEEEECC----cEEEeecccccccCcccccccCCCCcCCcCcCC---H----HH
Confidence            3478999999999998     899999999753    49999999998664432   2345789999999   9    77


Q ss_pred             hhc-----------cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhh
Q psy3184          81 IIN-----------VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCK  135 (185)
Q Consensus        81 ~~~-----------~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~  135 (185)
                      +..           ..|+.              ++|..||....+.......+. .......+|...+.++.+||.+||.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~L~  259 (343)
T 3dbq_A          181 IKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAII-DPNHEIEFPDIPEKDLQDVLKCCLK  259 (343)
T ss_dssp             HHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHH-CTTSCCCCCCCSCHHHHHHHHHHTC
T ss_pred             HhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHh-cCCcccCCcccCCHHHHHHHHHHcC
Confidence            653           22332              899999983344445555555 3334667788889999999999999


Q ss_pred             cCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         136 ESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       136 ~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                      .||.+||     ++.++++||||+.
T Consensus       260 ~dp~~Rp-----t~~e~l~hp~~~~  279 (343)
T 3dbq_A          260 RDPKQRI-----SIPELLAHPYVQI  279 (343)
T ss_dssp             SSTTTSC-----CHHHHHTSHHHHS
T ss_pred             CChhHCC-----CHHHHHhCccccc
Confidence            9999999     6699999999963

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.80  E-value=1.2e-19  Score=147.10  Aligned_cols=134  Identities=14%  Similarity=0.240  Sum_probs=101.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCC----------------------CCCeeEEcccCceeEeecCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGE----------------------AGNDLFVSAEGEFQVIKDGKILRLL   62 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~----------------------~~~~i~l~d~g~~~~~~~~~~~~~~   62 (185)
                      .+.||+.||+|||++     ||||+||+++.+.                      ....++|+|||.+.....  .....
T Consensus       142 i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~--~~~~~  219 (360)
T 3llt_A          142 YCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSD--YHGSI  219 (360)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTS--CCCSC
T ss_pred             HHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCC--CCcCc
Confidence            478999999999998     8999999997521                      122499999999975432  34467


Q ss_pred             cCCccccccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCc-------------
Q psy3184          63 SGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK-------------  115 (185)
Q Consensus        63 ~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~-------------  115 (185)
                      +||+.|+|   |    |++.+..|+.              ++|..||. +.+..+....+.. ....             
T Consensus       220 ~gt~~y~a---P----E~~~~~~~~~~~DiwslG~il~ell~g~~pf~-~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~  290 (360)
T 3llt_A          220 INTRQYRA---P----EVILNLGWDVSSDMWSFGCVLAELYTGSLLFR-THEHMEHLAMMES-IIQPIPKNMLYEATKTN  290 (360)
T ss_dssp             CSCGGGCC---H----HHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHH-HTCCCCHHHHHHHTTSG
T ss_pred             cCcccccC---c----HHHcCCCCCCccchHHHHHHHHHHHHCCCCCC-CCcHHHHHHHHHH-hcCCCCHHHHhhhhhcc
Confidence            89999999   9    8888776665              89999998 7776666555441 1000             


Q ss_pred             -----------cCCC--------------------CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCC
Q psy3184         116 -----------IPFP--------------------KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ  159 (185)
Q Consensus       116 -----------~~~p--------------------~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~  159 (185)
                                 ..+|                    ...++++.+||.+||..||.+||     ++.++++||||+
T Consensus       291 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp-----ta~elL~hp~f~  360 (360)
T 3llt_A          291 GSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRP-----SPAELLKHKFLE  360 (360)
T ss_dssp             GGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSC-----CHHHHTTSGGGC
T ss_pred             CccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCC-----CHHHHhcCcccC
Confidence                       0111                    11347888999999999999999     669999999996

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.80  E-value=5.5e-19  Score=143.14  Aligned_cols=152  Identities=15%  Similarity=0.197  Sum_probs=108.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.+.....  .....+||+.|+|   |    |++.+ 
T Consensus       131 i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~---~~kl~Dfg~~~~~~~--~~~~~~~t~~y~a---P----E~~~~~  198 (353)
T 3coi_A          131 LVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDC---ELKILDFGLARHADA--EMTGYVVTRWYRA---P----EVILSW  198 (353)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTC---CEEECSTTCTTC----------CCSBCCSC---H----HHHSCC
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCHHHEeECCCC---cEEEeecccccCCCC--CccccccCcCcCC---H----HHHhCc
Confidence            478999999999998     7899999999853   499999999875533  2345689999999   9    87765 


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CC------------------------Cc---cCCCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI------------------------DK---IPFPKH  121 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~------------------------~~---~~~p~~  121 (185)
                      ..++.              ++|..||. +.+..+.+..+... +.                        ..   ...+..
T Consensus       199 ~~~~~~~Di~slG~il~el~~g~~pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (353)
T 3coi_A          199 MHYNQTVDIWSVGCIMAEMLTGKTLFK-GKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPR  277 (353)
T ss_dssp             SCCCTTHHHHHHHHHHHHHHHSSCSSB-SSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTT
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCC
Confidence            33443              89999999 77766665554310 00                        00   112246


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS  180 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~  180 (185)
                      +++++.+||.+||..||.+||     ++.++++||||+........ .....||.+.+.
T Consensus       278 ~~~~~~~li~~~L~~dp~~Rp-----t~~e~l~hp~f~~~~~~~~~-~~~~~~~~~~~~  330 (353)
T 3coi_A          278 ASPQAADLLEKMLELDVDKRL-----TAAQALTHPFFEPFRDPEEE-TEAQQPFDDSLE  330 (353)
T ss_dssp             SCHHHHHHHHHHSCSCTTTSC-----CHHHHHTSGGGTTTCCGGGC-CCCSSCCCCTTT
T ss_pred             cCHHHHHHHHHHcCCCcccCC-----CHHHHhcCcchhhccCcccc-ccCCCCCccchh
Confidence            799999999999999999999     66999999999987665432 223455654443

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.79  E-value=4.2e-20  Score=145.48  Aligned_cols=139  Identities=18%  Similarity=0.319  Sum_probs=110.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||++     ||+|+||+++.+.....++|+|||.+.............||+.|+|   |    |++.+.
T Consensus       126 i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  198 (287)
T 2wei_A          126 IIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIA---P----EVLRGT  198 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSCHHHHHTTCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCccccccCcccccC---h----HHhcCC
Confidence            468999999999998     7899999998754333599999999876655544556678999999   9    876543


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                       ++.              ++|..||. +.+..+....+. .+......|  ..++.++.+||.+||..||.+||     +
T Consensus       199 -~~~~~Di~slG~~l~~l~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp-----s  270 (287)
T 2wei_A          199 -YDEKCDVWSAGVILYILLSGTPPFY-GKNEYDILKRVE-TGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRI-----T  270 (287)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSC-----C
T ss_pred             -CCCchhhHhHHHHHHHHHhCCCCCC-CCCHHHHHHHHH-cCCCCCCchhhhhcCHHHHHHHHHHcccChhhCc-----C
Confidence             333              88999999 888888877777 332222333  46899999999999999999999     6


Q ss_pred             hhhhhcCCCCCCCCh
Q psy3184         149 IVDIKKHKWFQGFDW  163 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~  163 (185)
                      +.++++||||+...+
T Consensus       271 ~~ell~hp~~~~~~~  285 (287)
T 2wei_A          271 ATQCLEHPWIQKYSS  285 (287)
T ss_dssp             HHHHHHSHHHHHHCC
T ss_pred             HHHHhcCHHHhcccc
Confidence            699999999976544

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.79  E-value=6.7e-20  Score=143.66  Aligned_cols=140  Identities=18%  Similarity=0.309  Sum_probs=108.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCC-CCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEA-GNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~-~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||++     ||+|+||+++.+.. ...++|+|||.+.............|++.|+|   |    |++..
T Consensus       113 ~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  185 (283)
T 3bhy_A          113 FLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVA---P----EIVNY  185 (283)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC--------CCCGGGCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCcccccCCCcCccC---c----ceecC
Confidence            478999999999997     89999999987531 12499999999987766555566789999999   9    88876


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      ..++.              ++|..||. +.+..+....+. ..  ...++    ..++.++.+||.+||..||.+||   
T Consensus       186 ~~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp---  258 (283)
T 3bhy_A          186 EPLGLEADMWSIGVITYILLSGASPFL-GETKQETLTNIS-AV--NYDFDEEYFSNTSELAKDFIRRLLVKDPKRRM---  258 (283)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCTTC-CSSHHHHHHHHH-TT--CCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSC---
T ss_pred             CCCCcchhhhhHHHHHHHHHHCCCCCC-CcchHHHHHHhH-hc--ccCCcchhcccCCHHHHHHHHHHccCCHhHCc---
Confidence            65554              89999999 888888877776 22  33333    56899999999999999999999   


Q ss_pred             CCChhhhhcCCCCCCCChhh
Q psy3184         146 RGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~~~~~~  165 (185)
                        ++.++++||||+.+.+..
T Consensus       259 --s~~~~l~h~~~~~~~~~~  276 (283)
T 3bhy_A          259 --TIAQSLEHSWIKAIRRRN  276 (283)
T ss_dssp             --CHHHHHHCHHHHHHHHCC
T ss_pred             --CHHHHHhCHHHHHHHHHh
Confidence              669999999998765543

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.79  E-value=3.7e-19  Score=141.49  Aligned_cols=143  Identities=17%  Similarity=0.216  Sum_probs=112.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||+.     ||+|+||+++.+.   .++|+|||.+...... .......||+.|+|   |    |++..
T Consensus       130 i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  199 (314)
T 3com_A          130 ILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEG---HAKLADFGVAGQLTDTMAKRNTVIGTPFWMA---P----EVIQE  199 (314)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC---CEEECCCTTCEECBTTBSCBCCCCSCGGGCC---H----HHHSS
T ss_pred             HHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCC---CEEEeecccchhhhhhccccCccCCCCCccC---h----hhcCC
Confidence            478999999999997     8999999998853   4999999999876543 23445689999999   9    88776


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. ..+.......+..........|..++.++.+||.+||..||.+||     ++
T Consensus       200 ~~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp-----t~  273 (314)
T 3com_A          200 IGYNCVADIWSLGITAIEMAEGKPPYA-DIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRA-----TA  273 (314)
T ss_dssp             SCBCTTHHHHHHHHHHHHHHHSSCTTT-TSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHTCSCTTTSC-----CH
T ss_pred             CCCCccccHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHhcCCCcccCCcccCCHHHHHHHHHHccCChhhCc-----CH
Confidence            65554              89999998 766666555555222223444567899999999999999999999     66


Q ss_pred             hhhhcCCCCCCCChhhhhc
Q psy3184         150 VDIKKHKWFQGFDWDGLRN  168 (185)
Q Consensus       150 ~~ll~hp~f~~~~~~~~~~  168 (185)
                      .++++||||++..+.....
T Consensus       274 ~~ll~~~~~~~~~~~~~~~  292 (314)
T 3com_A          274 TQLLQHPFVRSAKGVSILR  292 (314)
T ss_dssp             HHHTTSHHHHTCCCGGGGH
T ss_pred             HHHHhCHHHhcCCcchHHH
Confidence            9999999999887665443

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.79  E-value=2.6e-19  Score=144.92  Aligned_cols=141  Identities=15%  Similarity=0.153  Sum_probs=107.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++..... ......+||+.|+|   |    |++.+
T Consensus       117 ~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~a---P----E~~~~  186 (346)
T 1ua2_A          117 YMLMTLQGLEYLHQHWILHRDLKPNNLLLDENG---VLKLADFGLAKSFGSPNRAYTHQVVTRWYRA---P----ELLFG  186 (346)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC---CEEECCCGGGSTTTSCCCCCCCSCCCCTTCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCC---CEEEEecccceeccCCcccCCcccccccccC---c----hHhhC
Confidence            478999999999998     8999999998853   4999999999765432 33456789999999   9    87754


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CC-CccCC-----------------------CCCCC
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI-DKIPF-----------------------PKHVT  123 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~-~~~~~-----------------------p~~~s  123 (185)
                      . .|+.              ++|.+||. +.+..+.+..+... +. ....+                       ...++
T Consensus       187 ~~~~~~~~DiwslG~il~ell~g~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (346)
T 1ua2_A          187 ARMYGVGVDMWAVGCILAELLLRVPFLP-GDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAG  265 (346)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCC
T ss_pred             CCCCCchhhhHhHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCC
Confidence            3 3443              88999998 77777776666521 10 00011                       13567


Q ss_pred             HHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhh
Q psy3184         124 RTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGL  166 (185)
Q Consensus       124 ~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~  166 (185)
                      .++++||.+||..||.+||     ++.++++||||++..+...
T Consensus       266 ~~~~~li~~~L~~dP~~Rp-----t~~ell~h~~f~~~~~~~~  303 (346)
T 1ua2_A          266 DDLLDLIQGLFLFNPCARI-----TATQALKMKYFSNRPGPTP  303 (346)
T ss_dssp             HHHHHHHHHHHCSSTTTSC-----CHHHHHTSGGGTSSSCCCC
T ss_pred             HHHHHHHHHHhccChhhCC-----CHHHHhcChhhhcCCCCCC
Confidence            9999999999999999999     6699999999998766543

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.79  E-value=4.6e-19  Score=143.14  Aligned_cols=141  Identities=17%  Similarity=0.201  Sum_probs=104.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-----------ccccccCCccccccCC
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-----------ILRLLSGRPPFCVMND   73 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-----------~~~~~~gt~~y~a~~~   73 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.+.......           .....+||+.|+|   
T Consensus       117 ~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a---  190 (353)
T 2b9h_A          117 FIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNC---DLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRA---  190 (353)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCGGGEEECTTC---CEEECCCTTCEECC----------------CCCCCCGGGCC---
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCC---cEEEEecccccccccccccccCccccccchhhccccccccC---
Confidence            478999999999998     8999999998853   49999999998764321           1234689999999   


Q ss_pred             Ccccccchhc-cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCc---------------------cC
Q psy3184          74 PMQTYNMIIN-VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK---------------------IP  117 (185)
Q Consensus        74 P~~~~E~~~~-~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~---------------------~~  117 (185)
                      |    |++.. ..++.              ++|.+||. +.+.......+......+                     ..
T Consensus       191 P----E~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (353)
T 2b9h_A          191 P----EVMLTSAKYSRAMDVWSCGCILAELFLRRPIFP-GRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPM  265 (353)
T ss_dssp             H----HHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCC
T ss_pred             C----eeeccCCCccchhhHHHHHHHHHHHHhCCCCCC-CCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhcccC
Confidence            9    87654 33443              89999998 777655444332100000                     00


Q ss_pred             --------CCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhh
Q psy3184         118 --------FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGL  166 (185)
Q Consensus       118 --------~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~  166 (185)
                              .+..+++++.+||.+||..||.+||     ++.++++||||+...+...
T Consensus       266 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----t~~ell~hp~~~~~~~~~~  317 (353)
T 2b9h_A          266 YPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRI-----TAKEALEHPYLQTYHDPND  317 (353)
T ss_dssp             CCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSC-----CHHHHHTSGGGTTTCCTTS
T ss_pred             CCCcchhhhcccCCHHHHHHHHHhcCcCcccCC-----CHHHHhcCccccccCCccc
Confidence                    1136899999999999999999999     6699999999998877653

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.79  E-value=3.1e-19  Score=146.05  Aligned_cols=138  Identities=16%  Similarity=0.241  Sum_probs=95.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN-   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~-   83 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||+++....  .....+||+.|+|   |    |++.+ 
T Consensus       137 i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~---~~kL~DFG~a~~~~~--~~~~~~~t~~y~a---P----E~~~~~  204 (367)
T 2fst_X          137 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDC---ELKILDFGLARHTAD--EMTGYVATRWYRA---P----EIMLNW  204 (367)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC---CEEECC-----------------CCCTTCC---H----HHHTTC
T ss_pred             HHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCC---CEEEeeccccccccc--cCCCcCcCcCccC---h----HHHcCC
Confidence            468999999999998     8899999998853   499999999976533  2445789999999   9    87765 


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhc-CCC-------------------ccCCC--------CC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GID-------------------KIPFP--------KH  121 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~-------------------~~~~p--------~~  121 (185)
                      ..|+.              ++|.+||. +.+....+..+... |..                   -...|        ..
T Consensus       205 ~~~~~~~DiwslG~il~ell~g~~pf~-~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (367)
T 2fst_X          205 MHYNQTVDIWSVGCIMAELLTGRTLFP-GTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIG  283 (367)
T ss_dssp             CSCCTTHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTT
T ss_pred             cCCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCC
Confidence            34443              89999999 87776666555411 000                   00011        24


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhh
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                      +++++.+||.+||..||.+||     ++.+++.||||+......
T Consensus       284 ~~~~~~dLl~~mL~~dP~~R~-----t~~e~L~hp~~~~~~~~~  322 (367)
T 2fst_X          284 ANPLAVDLLEKMLVLDSDKRI-----TAAQALAHAYFAQYHDPD  322 (367)
T ss_dssp             CCHHHHHHHHHHSCSSGGGSC-----CHHHHHTSGGGTTTCCGG
T ss_pred             CCHHHHHHHHHhCCCCcccCc-----CHHHHhcChhhhhccCCC
Confidence            689999999999999999999     669999999998765543

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.79  E-value=5e-19  Score=139.38  Aligned_cols=134  Identities=22%  Similarity=0.366  Sum_probs=103.8

Q ss_pred             cHHHHHHHHHHHhhc-------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||.|||+.       ||||+||+++.+. + .++|+|||.+..... .......||+.|+|   |    |++.
T Consensus       134 ~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~-~-~~kl~Dfg~~~~~~~-~~~~~~~~t~~y~a---P----E~~~  203 (290)
T 1t4h_A          134 WCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPT-G-SVKIGDLGLATLKRA-SFAKAVIGTPEFMA---P----EMYE  203 (290)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTT-S-CEEECCTTGGGGCCT-TSBEESCSSCCCCC---G----GGGG
T ss_pred             HHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCC-C-CEEEeeCCCcccccc-cccccccCCcCcCC---H----HHHh
Confidence            368999999999986       6799999998431 2 499999999864433 33445689999999   9    7765


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +. ++.              ++|..||....+.......+. .+.....++...++++.+||.+||..||.+||     +
T Consensus       204 ~~-~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp-----s  276 (290)
T 1t4h_A          204 EK-YDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVT-SGVKPASFDKVAIPEVKEIIEGCIRQNKDERY-----S  276 (290)
T ss_dssp             TC-CCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHT-TTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSC-----C
T ss_pred             cc-CCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHh-ccCCccccCCCCCHHHHHHHHHHccCChhhCC-----C
Confidence            43 443              899999983355566666665 44345566677899999999999999999999     6


Q ss_pred             hhhhhcCCCCCC
Q psy3184         149 IVDIKKHKWFQG  160 (185)
Q Consensus       149 ~~~ll~hp~f~~  160 (185)
                      +.++++||||++
T Consensus       277 ~~ell~h~~f~~  288 (290)
T 1t4h_A          277 IKDLLNHAFFQE  288 (290)
T ss_dssp             HHHHHTSGGGC-
T ss_pred             HHHHhhCccccc
Confidence            699999999975

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.79  E-value=1.5e-19  Score=144.63  Aligned_cols=141  Identities=22%  Similarity=0.409  Sum_probs=107.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh--
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII--   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~--   82 (185)
                      ...||+.||+|||++     ||||+||+++.+.....++|+|||.+............+||+.|+|   |    |++.  
T Consensus       119 ~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~a---P----E~~~~~  191 (322)
T 2ycf_A          119 YFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLA---P----EVLVSV  191 (322)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHHHHHHHSCCTTCC---H----HHHHHT
T ss_pred             HHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccceecccccccccccCCcCccC---c----hhhccC
Confidence            467999999999998     8999999998754333499999999987766555556789999999   9    8764  


Q ss_pred             -ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCC----CCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          83 -NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPF----PKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        83 -~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~----p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                       ...|+.              ++|..||........+...+. .+  ...+    +..++.++.+||.+||..||.+|| 
T Consensus       192 ~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rp-  267 (322)
T 2ycf_A          192 GTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQIT-SG--KYNFIPEVWAEVSEKALDLVKKLLVVDPKARF-  267 (322)
T ss_dssp             TTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHH-HT--CCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSC-
T ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHH-hC--ccccCchhhhhcCHHHHHHHHHHcccCHhhCC-
Confidence             233333              899999983333334444444 22  2222    246899999999999999999999 


Q ss_pred             CCCCChhhhhcCCCCCCCChhh
Q psy3184         144 YQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       144 ~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                          ++.++++||||++.+|..
T Consensus       268 ----s~~~~l~h~~~~~~~~~~  285 (322)
T 2ycf_A          268 ----TTEEALRHPWLQDEDMKR  285 (322)
T ss_dssp             ----CHHHHHTSGGGCCHHHHH
T ss_pred             ----CHHHHhhCcCcCCHHHHH
Confidence                669999999999887654

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.79  E-value=1.3e-18  Score=135.73  Aligned_cols=135  Identities=21%  Similarity=0.324  Sum_probs=103.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||+.     ||+|+||+++.+.   .++|+|||.+.......   .....+||+.|+|   |    |++
T Consensus       110 ~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  179 (276)
T 2yex_A          110 FFHQLMAGVVYLHGIGITHRDIKPENLLLDERD---NLKISDFGLATVFRYNNRERLLNKMCGTLPYVA---P----ELL  179 (276)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC---CEEECCCTTCEECEETTEECCBCCCCSCGGGCC---G----GGG
T ss_pred             HHHHHHHHHHHHHhCCeeccCCChHHEEEccCC---CEEEeeCCCccccCCCcchhcccCCccccCccC---h----HHH
Confidence            478999999999998     8999999998753   39999999998765432   2345789999999   9    887


Q ss_pred             hccCc-ce--------------eccCCCCCCCCC-hHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          82 INVGI-DN--------------IFSRPPFCVMND-PMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        82 ~~~~~-~~--------------l~g~~Pf~~~~~-~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      ....+ +.              ++|..||. +.+ ....+..+. ........+..++.++.+||.+||..||.+||   
T Consensus       180 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp---  254 (276)
T 2yex_A          180 KRREFHAEPVDVWSCGIVLTAMLAGELPWD-QPSDSCQEYSDWK-EKKTYLNPWKKIDSAPLALLHKILVENPSARI---  254 (276)
T ss_dssp             TCSSBCHHHHHHHHHHHHHHHHHHSSCCCS-CSCTTSHHHHHHH-TTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSC---
T ss_pred             hcCCCCCCcchHHHHHHHHHHHHhCCCCCC-CCchHHHHHHHhh-hcccccCchhhcCHHHHHHHHHHCCCCchhCC---
Confidence            66554 22              89999998 443 333444444 22122222356899999999999999999999   


Q ss_pred             CCChhhhhcCCCCCCC
Q psy3184         146 RGGIVDIKKHKWFQGF  161 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~~  161 (185)
                        ++.++++||||+..
T Consensus       255 --s~~~il~~~~~~~~  268 (276)
T 2yex_A          255 --TIPDIKKDRWYNKP  268 (276)
T ss_dssp             --CHHHHTTCTTTTCC
T ss_pred             --CHHHHhcCccccCh
Confidence              66999999999764

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.79  E-value=1.9e-19  Score=141.38  Aligned_cols=134  Identities=16%  Similarity=0.249  Sum_probs=92.1

Q ss_pred             cHHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch--
Q psy3184          10 DTLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI--   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~--   81 (185)
                      .+.||+.||.|||++      ||||+||+++.+.   .++|+|||.+.............||+.|+|   |    |++  
T Consensus       114 i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~a---P----E~~~~  183 (290)
T 3fme_A          114 IAVSIVKALEHLHSKLSVIHRDVKPSNVLINALG---QVKMCDFGISGYLVDDVAKDIDAGCKPYMA---P----ERINP  183 (290)
T ss_dssp             HHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTC---CEEBCCC---------------CCCCCCSC---H----HHHSC
T ss_pred             HHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCC---CEEEeecCCcccccccccccccCCCccccC---h----hhcCh
Confidence            478999999999975      7899999998853   499999999987766555556689999999   9    775  


Q ss_pred             --hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC-CCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          82 --INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP-KHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        82 --~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p-~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                        ....++.              ++|..||................  .....+ ..++.++.+||.+||..||.+||  
T Consensus       184 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp--  259 (290)
T 3fme_A          184 ELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEE--PSPQLPADKFSAEFVDFTSQCLKKNSKERP--  259 (290)
T ss_dssp             CTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHS--CCCCCCTTTSCHHHHHHHHHHTCSSGGGSC--
T ss_pred             hhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhcc--CCCCcccccCCHHHHHHHHHHhhcChhhCc--
Confidence              3333443              89999998334555555544422  233333 56899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQG  160 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~  160 (185)
                         ++.++++||||+.
T Consensus       260 ---t~~e~l~hp~f~~  272 (290)
T 3fme_A          260 ---TYPELMQHPFFTL  272 (290)
T ss_dssp             ---CHHHHTTSHHHHH
T ss_pred             ---CHHHHHhCccccc
Confidence               6699999999953

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.79  E-value=3e-19  Score=147.48  Aligned_cols=144  Identities=14%  Similarity=0.179  Sum_probs=95.1

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccC-CCCCeeEEcccCceeEeecC----cccccccCCccccccCCCcccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEG-EAGNDLFVSAEGEFQVIKDG----KILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~-~~~~~i~l~d~g~~~~~~~~----~~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      ..+.||+.||.|||++     ||||+||++..+ .....++|+|||+++.....    ......+||+.|+|   |    
T Consensus       132 ~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~a---P----  204 (405)
T 3rgf_A          132 SLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRA---P----  204 (405)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCC---H----
T ss_pred             HHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccC---c----
Confidence            3477999999999997     899999999532 11224999999999866432    23445789999999   9    


Q ss_pred             cchhccC-cce--------------eccCCCCCCCCCh---------HHHHHHHHhc-CCC-ccCC--------------
Q psy3184          79 NMIINVG-IDN--------------IFSRPPFCVMNDP---------MQTYNMIINV-GID-KIPF--------------  118 (185)
Q Consensus        79 E~~~~~~-~~~--------------l~g~~Pf~~~~~~---------~~~~~~i~~~-~~~-~~~~--------------  118 (185)
                      |++.+.. |+.              ++|.+||. +.+.         .+.+..+... |.. ...+              
T Consensus       205 E~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~-~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~  283 (405)
T 3rgf_A          205 ELLLGARHYTKAIDIWAIGCIFAELLTSEPIFH-CRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMK  283 (405)
T ss_dssp             HHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTC-CCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHH
T ss_pred             hhhcCCCcccchhhhHHHHHHHHHHHhCCCCCC-CccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhh
Confidence            8887633 443              89999997 5443         2333333210 000 0000              


Q ss_pred             -------------------CCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhh
Q psy3184         119 -------------------PKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       119 -------------------p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                                         ....+.++.+||.+||..||.+||     +++++++||||+...+..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~-----ta~e~L~hp~f~~~~~~~  344 (405)
T 3rgf_A          284 DFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRI-----TSEQAMQDPYFLEDPLPT  344 (405)
T ss_dssp             HCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSC-----CHHHHHTSGGGTSSSCCC
T ss_pred             hccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCC-----CHHHHhcChhhccCCCCc
Confidence                               011278999999999999999999     669999999998766553

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.79  E-value=2.5e-19  Score=142.13  Aligned_cols=137  Identities=20%  Similarity=0.393  Sum_probs=107.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ...||+.||+|||+.     ||||+||++..+.....++|+|||.+..... ......+||+.|+|   |    |++.+.
T Consensus       111 ~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~-~~~~~~~~~~~y~a---P----E~~~~~  182 (304)
T 2jam_A          111 VIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQN-GIMSTACGTPGYVA---P----EVLAQK  182 (304)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCC-BTTHHHHSCCCBCC---T----TTBSSC
T ss_pred             HHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCC-CccccccCCCCccC---h----HHhccC
Confidence            468999999999997     7899999994322233599999999875433 23445679999999   9    887766


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCcc--CCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKI--PFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~--~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      .|+.              ++|..||. +.+...+...+. .+....  ..+..++.++.+||.+||..||.+||     +
T Consensus       183 ~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp-----s  255 (304)
T 2jam_A          183 PYSKAVDCWSIGVITYILLCGYPPFY-EETESKLFEKIK-EGYYEFESPFWDDISESAKDFICHLLEKDPNERY-----T  255 (304)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHSSCTTT-TSCHHHHHHHHH-HCCCCCCTTTTTTSCHHHHHHHHHHHCSSTTTSC-----C
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHH-cCCCCCCccccccCCHHHHHHHHHHcCCChhHCc-----C
Confidence            6554              89999999 888888888877 332111  22356899999999999999999999     6


Q ss_pred             hhhhhcCCCCCCC
Q psy3184         149 IVDIKKHKWFQGF  161 (185)
Q Consensus       149 ~~~ll~hp~f~~~  161 (185)
                      +.++++||||++.
T Consensus       256 ~~~~l~h~~~~~~  268 (304)
T 2jam_A          256 CEKALSHPWIDGN  268 (304)
T ss_dssp             HHHHHTSHHHHSS
T ss_pred             HHHHhcCccccCC
Confidence            6999999999653

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.78  E-value=5.4e-19  Score=141.20  Aligned_cols=151  Identities=15%  Similarity=0.147  Sum_probs=98.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.++......   ......+++.|+|   |    |++
T Consensus       142 i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  211 (323)
T 3qup_A          142 FMVDIACGMEYLSSRNFIHRDLAARNCMLAEDM---TVCVADFGLSRKIYSGDYYRQGCASKLPVKWLA---L----ESL  211 (323)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTS---CEEECCCCC-----------------CCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHcCCcccCCCCcceEEEcCCC---CEEEeeccccccccccccccccccccCcccccC---c----hhh
Confidence            478999999999998     8899999998853   49999999998664432   2233456788999   9    888


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC-
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ-  145 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~-  145 (185)
                      .+..|+.              ++ |..||. +.+..+....+.. + .....|..++.++.+||.+||..||.+||++. 
T Consensus       212 ~~~~~~~~~Di~slG~il~ell~~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~  288 (323)
T 3qup_A          212 ADNLYTVHSDVWAFGVTMWEIMTRGQTPYA-GIENAEIYNYLIG-G-NRLKQPPECMEEVYDLMYQCWSADPKQRPSFTC  288 (323)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TCCGGGHHHHHHT-T-CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             cCCCCCCccchhhHHHHHHHHHhCCCCCcc-ccChHHHHHHHhc-C-CCCCCCCccCHHHHHHHHHHccCChhhCcCHHH
Confidence            7766664              67 899999 8888888877772 2 35677788999999999999999999999521 


Q ss_pred             -CCChhhhhcCCCCCCCChhhhhcccCCC
Q psy3184         146 -RGGIVDIKKHKWFQGFDWDGLRNQTLTP  173 (185)
Q Consensus       146 -~~~~~~ll~hp~f~~~~~~~~~~~~~~~  173 (185)
                       ...+++++.|+|+.+..+..+.....++
T Consensus       289 l~~~l~~~l~~~~~~~~~~~pl~~~~~~~  317 (323)
T 3qup_A          289 LRMELENILGHLSVLSTSQDPLYINIERA  317 (323)
T ss_dssp             HHHHHHHHHHC------------------
T ss_pred             HHHHHHHHHHHhhhcCCCCCCCCCCCCcC
Confidence             0116889999999988887776665443

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.78  E-value=6.6e-20  Score=149.68  Aligned_cols=138  Identities=13%  Similarity=0.144  Sum_probs=102.9

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++....  ......||+.|+|   |    |++..
T Consensus       198 ~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~---~~kL~DFG~a~~~~~--~~~~~~~t~~y~a---P----E~~~~  265 (371)
T 3q60_A          198 ILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDG---RLMLGDVSALWKVGT--RGPASSVPVTYAP---R----EFLNA  265 (371)
T ss_dssp             HHHHHHHHHHHHHHHTTEEETTCSGGGEEECTTS---CEEECCGGGEEETTC--EEEGGGSCGGGCC---H----HHHTC
T ss_pred             HHHHHHHHHHHHHHHCCCccCcCCHHHEEECCCC---CEEEEecceeeecCC--CccCccCCcCCcC---h----hhccC
Confidence            4458999999999997     8999999998853   499999999986532  2324566799999   9    88865


Q ss_pred             --cCcce--------------eccCCCCCCCCChHH--HHHH---HHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCc
Q psy3184          84 --VGIDN--------------IFSRPPFCVMNDPMQ--TYNM---IINVGIDKIPFP--KHVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        84 --~~~~~--------------l~g~~Pf~~~~~~~~--~~~~---i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~  140 (185)
                        ..|+.              ++|..||. +.+...  .+..   .. .+...+.+|  ..+++++.+||.+||..||.+
T Consensus       266 ~~~~~~~~~DiwSlG~il~elltg~~Pf~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  343 (371)
T 3q60_A          266 STATFTHALNAWQLGLSIYRVWCLFLPFG-LVTPGIKGSWKRPSLRV-PGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRR  343 (371)
T ss_dssp             SEEECCHHHHHHHHHHHHHHHHHSSCSTT-BCCTTCTTCCCBCCTTS-CCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTT
T ss_pred             CCCCcCccccHHHHHHHHHHHHhCCCCCC-CcCcccccchhhhhhhh-ccccccchhhccCCCHHHHHHHHHHcCCChhh
Confidence              44554              88999998 543211  1110   00 011233333  478999999999999999999


Q ss_pred             ccCCCCCChhhhhcCCCCCCCChhh
Q psy3184         141 RLGYQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       141 R~~~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                      ||     ++.++++||||+.+.|..
T Consensus       344 Rp-----t~~e~l~hp~f~~~~~~~  363 (371)
T 3q60_A          344 RL-----LPLEAMETPEFLQLQNEI  363 (371)
T ss_dssp             CC-----CHHHHTTSHHHHHHHHHH
T ss_pred             CC-----CHHHHhcCHHHHHHHHHH
Confidence            99     669999999999887764

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.78  E-value=2.2e-19  Score=143.60  Aligned_cols=137  Identities=17%  Similarity=0.229  Sum_probs=101.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCC----------------CCeeEEcccCceeEeecCcccccccCCccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEA----------------GNDLFVSAEGEFQVIKDGKILRLLSGRPPF   68 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~----------------~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y   68 (185)
                      .+.||+.||+|||++     ||||+||+++.+..                ...++|+|||.+.....  .....+||+.|
T Consensus       123 ~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~--~~~~~~gt~~y  200 (339)
T 1z57_A          123 MAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDE--HHSTLVSTRHY  200 (339)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTS--CCCSSCSCGGG
T ss_pred             HHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCcc--ccccccCCccc
Confidence            478999999999998     89999999987421                11389999999976432  34467899999


Q ss_pred             cccCCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCc-------------------
Q psy3184          69 CVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK-------------------  115 (185)
Q Consensus        69 ~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~-------------------  115 (185)
                      +|   |    |++.+..|+.              ++|..||. +.+..+....+.......                   
T Consensus       201 ~a---P----E~~~~~~~~~~~Di~slG~il~el~~g~~pf~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  272 (339)
T 1z57_A          201 RA---P----EVILALGWSQPCDVWSIGCILIEYYLGFTVFP-THDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRL  272 (339)
T ss_dssp             CC---H----HHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCC-CSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEE
T ss_pred             cC---h----HHhhCCCCCcchhhHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHhCCCCHHHHhhccchhHHhhccc
Confidence            99   9    8887766664              89999998 776655544332100000                   


Q ss_pred             ----------------------cCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         116 ----------------------IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       116 ----------------------~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                                            ...+...++++.+||.+||..||.+||     ++.++++||||+.+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp-----t~~ell~hp~f~~~  335 (339)
T 1z57_A          273 DWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRI-----TLREALKHPFFDLL  335 (339)
T ss_dssp             CCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC-----CHHHHTTSGGGGGG
T ss_pred             cccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccccc-----CHHHHhcCHHHHHH
Confidence                                  001122357889999999999999999     66999999999754

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.78  E-value=3.2e-19  Score=142.40  Aligned_cols=129  Identities=18%  Similarity=0.268  Sum_probs=97.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-------------ccccccCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-------------ILRLLSGRPPFCVM   71 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-------------~~~~~~gt~~y~a~   71 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++......             .....+||+.|+| 
T Consensus       169 i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~---~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a-  244 (332)
T 3qd2_B          169 IFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDD---VVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMS-  244 (332)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC---CEEECCCTTCEECSCC--------------CCCSCC-CGGGSC-
T ss_pred             HHHHHHHHHHHHHhCCeeecCCCcccEEEeCCC---CEEEeecCcccccccchhhccccccccccccccccCCCcCccC-
Confidence            478999999999998     8999999998753   49999999998775431             2234679999999 


Q ss_pred             CCCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC---CCCCHHHHHHHHHHh
Q psy3184          72 NDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP---KHVTRTAQSLIKALC  134 (185)
Q Consensus        72 ~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p---~~~s~~~~~li~~~l  134 (185)
                        |    |++.+..|+.              ++|..|+.   +.......+.     ...+|   ...++++.+||.+||
T Consensus       245 --P----E~~~~~~~~~~~Di~slG~il~el~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~li~~~l  310 (332)
T 3qd2_B          245 --P----EQIHGNNYSHKVDIFSLGLILFELLYSFSTQM---ERVRIITDVR-----NLKFPLLFTQKYPQEHMMVQDML  310 (332)
T ss_dssp             --H----HHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHH---HHHHHHHHHH-----TTCCCHHHHHHCHHHHHHHHHHH
T ss_pred             --h----HHhcCCCCcchhhHHHHHHHHHHHHHcCCChh---HHHHHHHHhh-----ccCCCcccccCChhHHHHHHHHc
Confidence              9    8887766665              66655543   2233333443     22333   346789999999999


Q ss_pred             hcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         135 KESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       135 ~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      ..||.+||     ++.++++||||+++
T Consensus       311 ~~~p~~Rp-----s~~~~l~~~~f~~~  332 (332)
T 3qd2_B          311 SPSPTERP-----EATDIIENAIFENL  332 (332)
T ss_dssp             CSSGGGSC-----CHHHHHHSTTCCCC
T ss_pred             cCCCCcCC-----CHHHHhhchhhhcC
Confidence            99999999     66999999999874

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.78  E-value=2.4e-19  Score=141.78  Aligned_cols=142  Identities=16%  Similarity=0.204  Sum_probs=106.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccchh-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMII-   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~~-   82 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.   .++|+|||.+..... ........||+.|+|   |    |++. 
T Consensus       122 ~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  191 (302)
T 2j7t_A          122 VCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEG---DIRLADFGVSAKNLKTLQKRDSFIGTPYWMA---P----EVVMC  191 (302)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTS---CEEECCCHHHHHHHHHHHC-----CCGGGCC---H----HHHHH
T ss_pred             HHHHHHHHHHHHhcCCcccCCCCHHHEEECCCC---CEEEEECCCCccccccccccccccCChhhcC---C----eeecc
Confidence            467999999999998     7899999998753   499999998753322 122345689999999   9    7763 


Q ss_pred             ----ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 ----NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 ----~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                          ...++.              ++|..||. ..+.......+..........|..++.++.+||.+||..||.+||  
T Consensus       192 ~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp--  268 (302)
T 2j7t_A          192 ETMKDTPYDYKADIWSLGITLIEMAQIEPPHH-ELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRP--  268 (302)
T ss_dssp             HHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTT-TSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSCTTTSC--
T ss_pred             ccCCCCCCchhhhHHHHHHHHHHHhcCCCCCc-cCCHHHHHHHHhccCCcccCCccccCHHHHHHHHHHcccChhhCC--
Confidence                233332              89999999 777777776666322122344567899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCCCChhhhh
Q psy3184         145 QRGGIVDIKKHKWFQGFDWDGLR  167 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~~~~~~  167 (185)
                         ++.++++||||+...|....
T Consensus       269 ---s~~~ll~h~~~~~~~~~~~~  288 (302)
T 2j7t_A          269 ---SAAQLLEHPFVSSITSNKAL  288 (302)
T ss_dssp             ---CHHHHTTSTTTTTCCCCHHH
T ss_pred             ---CHHHHhcChHHhhhccchhH
Confidence               66999999999999887643

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.77  E-value=6e-19  Score=140.97  Aligned_cols=139  Identities=18%  Similarity=0.236  Sum_probs=101.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchh-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMII-   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~-   82 (185)
                      .+.||+.||.|||+.     ||+|+||+++.+.   .++|+|||.+...... .......||+.|+|   |    |++. 
T Consensus       134 i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  203 (326)
T 2x7f_A          134 ICREILRGLSHLHQHKVIHRDIKGQNVLLTENA---EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMA---P----EVIAC  203 (326)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTC---CEEECCCTTTC-------------CCGGGCC---H----HHHC-
T ss_pred             HHHHHHHHHHHHHHCCccccCCcHHHEEEcCCC---CEEEeeCcCceecCcCccccccccCCccccC---h----hhhcc
Confidence            467999999999998     7899999998753   3999999998765432 23345689999999   9    8775 


Q ss_pred             ----ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 ----NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 ----~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                          ...++.              ++|..||. +.+.......+. ........+..++.++.+||.+||..||.+||  
T Consensus       204 ~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp--  279 (326)
T 2x7f_A          204 DENPDATYDFKSDLWSLGITAIEMAEGAPPLC-DMHPMRALFLIP-RNPAPRLKSKKWSKKFQSFIESCLVKNHSQRP--  279 (326)
T ss_dssp             -------CCTTHHHHHHHHHHHHHHHSSCTTT-TSCHHHHHHHHH-HSCCCCCSCSCSCHHHHHHHHHHCCSSGGGSC--
T ss_pred             ccccCcCCCccchHHHHHHHHHHHHhCCCCCC-CCcHHHHHHHhh-cCccccCCccccCHHHHHHHHHHhccChhhCC--
Confidence                222332              89999998 777666666665 22122233457899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCCCChhh
Q psy3184         145 QRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~~~~  165 (185)
                         ++.++++||||+...+..
T Consensus       280 ---s~~~ll~hp~~~~~~~~~  297 (326)
T 2x7f_A          280 ---ATEQLMKHPFIRDQPNER  297 (326)
T ss_dssp             ---CHHHHHTSHHHHCCTTHH
T ss_pred             ---CHHHHhhChHHhhCcccc
Confidence               669999999998876654

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.77  E-value=7.6e-19  Score=142.71  Aligned_cols=132  Identities=16%  Similarity=0.205  Sum_probs=104.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh--
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII--   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~--   82 (185)
                      .+.|++.||+|||++     ||||+||+++.+.   .++|+|||.+.....   ....+||+.|+|   |    |++.  
T Consensus       159 i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~---~~kL~DfG~a~~~~~---~~~~~gt~~y~a---P----E~~~~~  225 (348)
T 1u5q_A          159 VTHGALQGLAYLHSHNMIHRDVKAGNILLSEPG---LVKLGDFGSASIMAP---ANSFVGTPYWMA---P----EVILAM  225 (348)
T ss_dssp             HHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTT---EEEECCCTTCBSSSS---BCCCCSCGGGCC---H----HHHHTT
T ss_pred             HHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCC---CEEEeeccCceecCC---CCcccCCcceeC---H----hhhccc
Confidence            467999999999998     8999999998753   499999999876533   335689999999   9    8774  


Q ss_pred             -ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 -NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 -~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                       ...|+.              ++|..||. +.+.......+. .+..+...+..++.++++||.+||..||.+||     
T Consensus       226 ~~~~~~~~~DiwslG~il~ell~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp-----  298 (348)
T 1u5q_A          226 DEGQYDGKVDVWSLGITCIELAERKPPLF-NMNAMSALYHIA-QNESPALQSGHWSEYFRNFVDSCLQKIPQDRP-----  298 (348)
T ss_dssp             SSCCBCTHHHHHHHHHHHHHHHHSSCTTT-TSCHHHHHHHHH-HSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHH-hcCCCCCCCCCCCHHHHHHHHHHcccChhhCc-----
Confidence             233443              89999998 777776666666 23233334467899999999999999999999     


Q ss_pred             ChhhhhcCCCCCCC
Q psy3184         148 GIVDIKKHKWFQGF  161 (185)
Q Consensus       148 ~~~~ll~hp~f~~~  161 (185)
                      +++++++||||...
T Consensus       299 s~~~ll~h~~~~~~  312 (348)
T 1u5q_A          299 TSEVLLKHRFVLRE  312 (348)
T ss_dssp             CHHHHTTCHHHHSC
T ss_pred             CHHHHhhChhhhcc
Confidence            66999999999553

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.77  E-value=1.2e-18  Score=137.06  Aligned_cols=139  Identities=18%  Similarity=0.228  Sum_probs=101.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||+.     ||+|+||+++... + .++|+|||.+...... .......||+.|+|   |    |++..
T Consensus       127 ~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~-~-~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  197 (295)
T 2clq_A          127 YTKQILEGLKYLHDNQIVHRDIKGDNVLINTYS-G-VLKISDFGTSKRLAGINPCTETFTGTLQYMA---P----EIIDK  197 (295)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEEETTT-C-CEEECCTTTCEESCC-----CCCCCCGGGCC---H----HHHHH
T ss_pred             HHHHHHHHHHHHHhCCEEccCCChhhEEEECCC-C-CEEEeecccccccCCCCCcccccCCCccccC---h----hhhcC
Confidence            467999999999998     8999999998732 2 4999999999866432 23445789999999   9    87765


Q ss_pred             cC--cce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          84 VG--IDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        84 ~~--~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ..  ++.              ++|..||.............. .......+|..++.++.+||.+||..||.+||     
T Consensus       198 ~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp-----  271 (295)
T 2clq_A          198 GPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVG-MFKVHPEIPESMSAEAKAFILKCFEPDPDKRA-----  271 (295)
T ss_dssp             GGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHH-HHCCCCCCCTTSCHHHHHHHHHTTCSSTTTSC-----
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhc-cccccccccccCCHHHHHHHHHHccCChhhCC-----
Confidence            32  332              899999972223332222221 11235677888999999999999999999999     


Q ss_pred             ChhhhhcCCCCCCCCh
Q psy3184         148 GIVDIKKHKWFQGFDW  163 (185)
Q Consensus       148 ~~~~ll~hp~f~~~~~  163 (185)
                      ++.+++.||||+....
T Consensus       272 s~~~ll~~~~~~~~~~  287 (295)
T 2clq_A          272 CANDLLVDEFLKVSSK  287 (295)
T ss_dssp             CHHHHHTSGGGCC---
T ss_pred             CHHHHhcChhhhhccc
Confidence            6699999999986543

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.77  E-value=9.3e-19  Score=140.20  Aligned_cols=133  Identities=23%  Similarity=0.321  Sum_probs=105.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||+.     ||||+||+++.+. + .++|+|||.+...... ......||+.|+|   |    |++...
T Consensus       154 i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~-~-~~kL~Dfg~~~~~~~~-~~~~~~gt~~y~a---P----E~~~~~  223 (320)
T 3a99_A          154 FFWQVLEAVRHCHNCGVLHRDIKDENILIDLNR-G-ELKLIDFGSGALLKDT-VYTDFDGTRVYSP---P----EWIRYH  223 (320)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEEETTT-T-EEEECCCTTCEECCSS-CBCCCCSCGGGSC---H----HHHHHS
T ss_pred             HHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCC-C-CEEEeeCccccccccc-cccCCCCCccCCC---h----HHhccC
Confidence            467999999999998     8999999998431 2 4999999999876543 3445689999999   9    877665


Q ss_pred             Ccc-e--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GID-N--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~-~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .+. .              ++|..||. ..+      .+. .  ....++..+++++.+||.+||..||.+||     ++
T Consensus       224 ~~~~~~~Di~slG~il~el~~g~~pf~-~~~------~~~-~--~~~~~~~~~~~~~~~li~~~l~~dp~~Rp-----s~  288 (320)
T 3a99_A          224 RYHGRSAAVWSLGILLYDMVCGDIPFE-HDE------EII-R--GQVFFRQRVSSECQHLIRWCLALRPSDRP-----TF  288 (320)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHSSCSCC-SHH------HHH-H--CCCCCSSCCCHHHHHHHHHHTCSSGGGSC-----CH
T ss_pred             CCCCccchHHhHHHHHHHHHHCCCCCC-Chh------hhh-c--ccccccccCCHHHHHHHHHHccCChhhCc-----CH
Confidence            542 2              89999997 431      223 1  25567788999999999999999999999     66


Q ss_pred             hhhhcCCCCCCCChhhhh
Q psy3184         150 VDIKKHKWFQGFDWDGLR  167 (185)
Q Consensus       150 ~~ll~hp~f~~~~~~~~~  167 (185)
                      .++++||||++..+..-.
T Consensus       289 ~~ll~hp~~~~~~~~~~~  306 (320)
T 3a99_A          289 EEIQNHPWMQDVLLPQET  306 (320)
T ss_dssp             HHHHTSGGGSSCCCHHHH
T ss_pred             HHHhcCHhhcCccCcccc
Confidence            999999999988766433

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.77  E-value=1.9e-18  Score=136.81  Aligned_cols=132  Identities=17%  Similarity=0.288  Sum_probs=109.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||+.     ||+|+||+++.+.   .++|+|||.+....... ......||+.|+|   |    |++..
T Consensus       124 ~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  193 (303)
T 3a7i_A          124 ILREILKGLDYLHSEKKIHRDIKAANVLLSEHG---EVKLADFGVAGQLTDTQIKRNTFVGTPFWMA---P----EVIKQ  193 (303)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS---CEEECCCTTCEECBTTBCCBCCCCSCGGGCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHCCCccCCCChheEEECCCC---CEEEeecccceecCccccccCccCCCcCccC---H----HHHhc
Confidence            478999999999998     8999999998753   49999999998765432 3445789999999   9    88876


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      ..++.              ++|..||. ..+.......+.. + ....++..++.++.+||.+||..||.+||     ++
T Consensus       194 ~~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rp-----s~  265 (303)
T 3a7i_A          194 SAYDSKADIWSLGITAIELARGEPPHS-ELHPMKVLFLIPK-N-NPPTLEGNYSKPLKEFVEACLNKEPSFRP-----TA  265 (303)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCTTT-TSCHHHHHHHHHH-S-CCCCCCSSCCHHHHHHHHHHCCSSGGGSC-----CH
T ss_pred             CCCCchhhhHHHHHHHHHHccCCCCCC-CcCHHHHHHHhhc-C-CCCCCccccCHHHHHHHHHHcCCChhhCc-----CH
Confidence            65554              89999998 7777777666662 2 35566778999999999999999999999     66


Q ss_pred             hhhhcCCCCC
Q psy3184         150 VDIKKHKWFQ  159 (185)
Q Consensus       150 ~~ll~hp~f~  159 (185)
                      .++++||||.
T Consensus       266 ~~ll~~~~~~  275 (303)
T 3a7i_A          266 KELLKHKFIL  275 (303)
T ss_dssp             HHHTTCHHHH
T ss_pred             HHHhhChhhh
Confidence            9999999994

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.77  E-value=1.5e-18  Score=135.62  Aligned_cols=131  Identities=16%  Similarity=0.174  Sum_probs=95.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCC----------------CCCeeEEcccCceeEeecCcccccccCCccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGE----------------AGNDLFVSAEGEFQVIKDGKILRLLSGRPPF   68 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~----------------~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y   68 (185)
                      .+.||+.||+|||++     ||||+||+++.+.                ....++++|||.+......   ....||+.|
T Consensus       120 i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~---~~~~gt~~y  196 (289)
T 1x8b_A          120 LLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSP---QVEEGDSRF  196 (289)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCS---CCCCCCGGG
T ss_pred             HHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCc---cccCCCccc
Confidence            478999999999998     8999999998542                2224899999999866443   234699999


Q ss_pred             cccCCCcccccchhcc-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHH
Q psy3184          69 CVMNDPMQTYNMIINV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKAL  133 (185)
Q Consensus        69 ~a~~~P~~~~E~~~~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~  133 (185)
                      +|   |    |++... .++.              ++|.+++. ..   .....+. .+ ....+|..+++++.+||.+|
T Consensus       197 ~a---P----E~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~-~~---~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~  263 (289)
T 1x8b_A          197 LA---N----EVLQENYTHLPKADIFALALTVVCAAGAEPLPR-NG---DQWHEIR-QG-RLPRIPQVLSQEFTELLKVM  263 (289)
T ss_dssp             CC---H----HHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCS-SS---HHHHHHH-TT-CCCCCSSCCCHHHHHHHHHH
T ss_pred             cC---h----hHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCc-ch---hHHHHHH-cC-CCCCCCcccCHHHHHHHHHH
Confidence            99   9    877654 2322              66666665 33   2334444 22 34567788999999999999


Q ss_pred             hhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         134 CKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       134 l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      |..||.+||     ++.++++||||++.
T Consensus       264 l~~dp~~Rp-----s~~~ll~h~~~~~~  286 (289)
T 1x8b_A          264 IHPDPERRP-----SAMALVKHSVLLSA  286 (289)
T ss_dssp             TCSSGGGSC-----CHHHHHTCTTC---
T ss_pred             hCCCcccCC-----CHHHHhhChHhhhh
Confidence            999999999     66999999999864

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.76  E-value=4.4e-19  Score=142.51  Aligned_cols=144  Identities=13%  Similarity=0.188  Sum_probs=102.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.   .++|+|||.+...... ......+||+.|+|   |    |++.+
T Consensus       129 ~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~a---P----E~~~~  198 (331)
T 4aaa_A          129 YLFQIINGIGFCHSHNIIHRDIKPENILVSQSG---VVKLCDFGFARTLAAPGEVYDDEVATRWYRA---P----ELLVG  198 (331)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS---CEEECCCTTC------------CCCCCTTCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHCCEEccCcChheEEEcCCC---cEEEEeCCCceeecCCccccCCCcCCccccC---c----ccccC
Confidence            478999999999998     8899999998753   4999999999766442 33455789999999   9    87765


Q ss_pred             c-Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CC---------------CccCCC------------C
Q psy3184          84 V-GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI---------------DKIPFP------------K  120 (185)
Q Consensus        84 ~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~---------------~~~~~p------------~  120 (185)
                      . .++.              ++|..||. +.+..+....+... +.               .....|            .
T Consensus       199 ~~~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (331)
T 4aaa_A          199 DVKYGKAVDVWAIGCLVTEMFMGEPLFP-GDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYP  277 (331)
T ss_dssp             CTTCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHST
T ss_pred             CCCcchHHHHHHHHHHHHHHHhCCCCCC-CCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhccc
Confidence            4 3443              89999998 76665554443310 00               001111            2


Q ss_pred             CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcc
Q psy3184         121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQ  169 (185)
Q Consensus       121 ~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~  169 (185)
                      .+++++.+||.+||..||.+||     ++.++++||||+...+.....+
T Consensus       278 ~~~~~l~~li~~~L~~dP~~Rp-----t~~ell~hp~f~~~~~~~~~~~  321 (331)
T 4aaa_A          278 KLSEVVIDLAKKCLHIDPDKRP-----FCAELLHHDFFQMDGFAERFSQ  321 (331)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSC-----CGGGGGGSHHHHGGGHHHHHHH
T ss_pred             chhHHHHHHHHHHhccCcccCC-----CHHHHhcCchhccCChhhhhhH
Confidence            5799999999999999999999     5599999999998777665444

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.76  E-value=2e-19  Score=147.28  Aligned_cols=126  Identities=13%  Similarity=0.162  Sum_probs=97.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++..  +......+| +.|+|   |    |++...
T Consensus       211 i~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~---~~kL~DFG~a~~~--~~~~~~~~g-~~y~a---P----E~~~~~  277 (377)
T 3byv_A          211 LTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRG---GVFLTGFEHLVRD--GARVVSSVS-RGFEP---P----ELEARR  277 (377)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCGGGEEECTTC---CEEECCGGGCEET--TCEEECCCC-TTCCC---H----HHHHHH
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCC---CEEEEechhheec--CCcccCCCC-cCccC---h----hhhccc
Confidence            578999999999998     8999999999763   4999999999853  334556788 99999   9    887765


Q ss_pred             -----------Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcC
Q psy3184          85 -----------GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        85 -----------~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~  139 (185)
                                 .|+.              ++|..||. +.+.......+.       ..+..+++++.+||.+||..||.
T Consensus       278 ~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~-~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~L~~dp~  349 (377)
T 3byv_A          278 ATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPIT-KDAALGGSEWIF-------RSCKNIPQPVRALLEGFLRYPKE  349 (377)
T ss_dssp             TSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC-------CCSGGGG-------SSCCCCCHHHHHHHHHHTCSSGG
T ss_pred             ccccccccccccCChhhhHHHHHHHHHHHHHCCCCCc-ccccccchhhhh-------hhccCCCHHHHHHHHHHcCCCch
Confidence                       5554              89999998 555443333332       22357899999999999999999


Q ss_pred             cccCCCCCChhhhhcCCCCCCC
Q psy3184         140 ERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       140 ~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      +||     ++.++++||||+.+
T Consensus       350 ~Rp-----t~~e~l~hp~f~~~  366 (377)
T 3byv_A          350 DRL-----LPLQAMETPEYEQL  366 (377)
T ss_dssp             GCC-----CHHHHHTSHHHHHH
T ss_pred             hCC-----CHHHHhhChHHHHH
Confidence            999     66999999999754

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.76  E-value=4.1e-19  Score=143.36  Aligned_cols=134  Identities=23%  Similarity=0.352  Sum_probs=80.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||++     ||||+||+++.+.....++|+|||.+...... .....+||+.|+|   |    |++...
T Consensus       133 i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~t~~y~a---P----E~~~~~  204 (336)
T 3fhr_A          133 IMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQN-ALQTPCYTPYYVA---P----EVLGPE  204 (336)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC------------------------------C
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccceecccc-ccccCCCCcCccC---h----hhhCCC
Confidence            478999999999998     89999999987543334999999999866432 3445688999999   9    877655


Q ss_pred             Ccce--------------eccCCCCCCCCChHHH----HHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCccc
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQT----YNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~----~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                      .|+.              ++|..||. +.+....    ...+. .  ....+|    ..++.++++||.+||..||.+||
T Consensus       205 ~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp  280 (336)
T 3fhr_A          205 KYDKSCDMWSLGVIMYILLCGFPPFY-SNTGQAISPGMKRRIR-L--GQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERL  280 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCC-------------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSC
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCC-CccchhhhhhHHHhhh-c--cccccCchhhccCCHHHHHHHHHHCCCChhHCc
Confidence            5543              89999997 5543332    12222 1  122222    46899999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCC
Q psy3184         143 GYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~  160 (185)
                           ++.++++||||+.
T Consensus       281 -----t~~ell~hp~~~~  293 (336)
T 3fhr_A          281 -----TITQFMNHPWINQ  293 (336)
T ss_dssp             -----CHHHHHHSHHHHT
T ss_pred             -----CHHHHhcCccccc
Confidence                 6699999999964

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.76  E-value=2.8e-19  Score=145.15  Aligned_cols=138  Identities=14%  Similarity=0.193  Sum_probs=101.6

Q ss_pred             ccHHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.|++.||.|||+.      ||||+||+++.+.   .++|+|||.+..... ......+||+.|+|   |    |++.
T Consensus       135 ~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~-~~~~~~~gt~~y~a---P----E~~~  203 (360)
T 3eqc_A          135 KVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRG---EIKLCDFGVSGQLID-SMANSFVGTRSYMS---P----ERLQ  203 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTC---CEEECCCCCCHHHHH-HC----CCCCTTCC---H----HHHT
T ss_pred             HHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCC---CEEEEECCCCccccc-ccccCCCCCCCeEC---H----HHHc
Confidence            3478999999999973      8899999999863   499999999865432 23345689999999   9    8887


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHH------------------------------------------H
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTY------------------------------------------N  106 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~------------------------------------------~  106 (185)
                      +..|+.              ++|..||. ..+.....                                          .
T Consensus       204 ~~~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (360)
T 3eqc_A          204 GTHYSVQSDIWSMGLSLVEMAVGRYPIP-PPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLD  282 (360)
T ss_dssp             TCCCSHHHHHHHHHHHHHHHHHTSCCSS-CCCHHHHHHHHC------------------------------CCCHHHHHH
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhhhh
Confidence            766654              89999998 65544332                                          2


Q ss_pred             HHHhcCCCccCCC-CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhh
Q psy3184         107 MIINVGIDKIPFP-KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       107 ~i~~~~~~~~~~p-~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                      .+. .+ .....+ ..++.++.+||.+||..||.+||     ++.++++||||+...|..
T Consensus       283 ~~~-~~-~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----t~~ell~hp~~~~~~~~~  335 (360)
T 3eqc_A          283 YIV-NE-PPPKLPSGVFSLEFQDFVNKCLIKNPAERA-----DLKQLMVHAFIKRSDAEE  335 (360)
T ss_dssp             HHH-HS-CCCCCCTTTSCHHHHHHHHHHHCSSTTTSC-----CHHHHHTSHHHHHHHHSC
T ss_pred             HHh-cc-CCCCCCcccccHHHHHHHHHHhhcChhhCC-----CHHHHhhChHhhcchHhh
Confidence            222 11 122222 35799999999999999999999     669999999997765544

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.76  E-value=9.5e-19  Score=138.93  Aligned_cols=141  Identities=13%  Similarity=0.177  Sum_probs=104.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC----cccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG----KILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~----~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||+|||++     ||||+||+++.+.  ..++|+|||.++.....    .......||+.|+|   |    |+
T Consensus       125 ~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~--~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  195 (320)
T 2i6l_A          125 FMYQLLRGLKYIHSANVLHRDLKPANLFINTED--LVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRS---P----RL  195 (320)
T ss_dssp             HHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTT--TEEEECCCTTCBCC--------CCCGGGSCCTTCC---H----HH
T ss_pred             HHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCC--CeEEEccCccccccCCCcccccccccccccccccC---c----HH
Confidence            478999999999998     8899999997532  25999999999865432    23345678999999   9    87


Q ss_pred             hhc-cCcce--------------eccCCCCCCCCChHHHHHHHHhcCC----------------------Ccc-----CC
Q psy3184          81 IIN-VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI----------------------DKI-----PF  118 (185)
Q Consensus        81 ~~~-~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~----------------------~~~-----~~  118 (185)
                      +.. ..++.              ++|..||. +.+..+....+.....                      ...     ..
T Consensus       196 ~~~~~~~~~~~Di~slG~il~el~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (320)
T 2i6l_A          196 LLSPNNYTKAIDMWAAGCIFAEMLTGKTLFA-GAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQL  274 (320)
T ss_dssp             HHCTTCCCHHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHH
T ss_pred             hcCcccCCchhhhHhHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHh
Confidence            654 33443              89999999 7777666665542110                      000     11


Q ss_pred             CCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhh
Q psy3184         119 PKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDG  165 (185)
Q Consensus       119 p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~  165 (185)
                      +..++.++++||++||..||.+||     ++.++++||||+..+|..
T Consensus       275 ~~~~~~~~~~li~~~L~~dP~~Rp-----t~~ell~hp~~~~~~~p~  316 (320)
T 2i6l_A          275 LPGISREAVDFLEQILTFSPMDRL-----TAEEALSHPYMSIYSFPM  316 (320)
T ss_dssp             STTCCHHHHHHHHTTSCSSGGGSC-----CHHHHHTSHHHHTTCC--
T ss_pred             cchhhHHHHHHHHHHcCCCccccC-----CHHHHhCCcccccccCcc
Confidence            245899999999999999999999     669999999999887764

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.76  E-value=1.2e-18  Score=137.39  Aligned_cols=143  Identities=19%  Similarity=0.303  Sum_probs=95.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC------cccccccCCccccccCCCcccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG------KILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~------~~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      .+.||+.||.|||+.     ||+|+||+++.+.   .++|+|||.+......      .......||+.|+|   |    
T Consensus       126 i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~a---P----  195 (303)
T 2vwi_A          126 ILREVLEGLEYLHKNGQIHRDVKAGNILLGEDG---SVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMA---P----  195 (303)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTC---CEEECCCHHHHHCC---------------CCCTTCC---H----
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCC---CEEEEeccchheeccCCCccchhhhcccCCCccccC---H----
Confidence            367999999999998     7899999998753   3999999988654332      12345689999999   9    


Q ss_pred             cchhc-cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCC-------ccCCCCCCCHHHHHHHHHHhhc
Q psy3184          79 NMIIN-VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID-------KIPFPKHVTRTAQSLIKALCKE  136 (185)
Q Consensus        79 E~~~~-~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~-------~~~~p~~~s~~~~~li~~~l~~  136 (185)
                      |++.. ..++.              ++|..||. +.+..............       ....+..++.++.+||.+||..
T Consensus       196 E~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  274 (303)
T 2vwi_A          196 EVMEQVRGYDFKADIWSFGITAIELATGAAPYH-KYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQK  274 (303)
T ss_dssp             HHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTT-TSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHHHHHCCS
T ss_pred             HHhccccCCCchhhHHHHHHHHHHHHhCCCCCc-cCchhhHHHHHhccCCCccccccccchhhhhhhHHHHHHHHHHccC
Confidence            87754 33443              89999998 66655554444411111       1122346789999999999999


Q ss_pred             CcCcccCCCCCChhhhhcCCCCCCCChhhhhc
Q psy3184         137 SPAERLGYQRGGIVDIKKHKWFQGFDWDGLRN  168 (185)
Q Consensus       137 dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~  168 (185)
                      ||.+||     ++.++++||||+...+..+.+
T Consensus       275 dp~~Rp-----s~~~ll~h~~~~~~~~~~~~q  301 (303)
T 2vwi_A          275 DPEKRP-----TAAELLRHKFFQKAKNKEFLQ  301 (303)
T ss_dssp             SGGGSC-----CHHHHHTSTTC----------
T ss_pred             ChhhCc-----CHHHHhhChhhhcCCCCcccc
Confidence            999999     669999999999877765443

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.76  E-value=1.6e-18  Score=137.99  Aligned_cols=135  Identities=21%  Similarity=0.335  Sum_probs=98.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     ||||+||+++.   + .++|+|||.++......   .....+||+.|+|   |    |++
T Consensus       132 i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~---~-~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~a---P----E~~  200 (313)
T 3cek_A          132 YWKNMLEAVHTIHQHGIVHSDLKPANFLIVD---G-MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMP---P----EAI  200 (313)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGGEEEET---T-EEEECCCSSSCC--------------CCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHCCceecCCCcccEEEEC---C-eEEEeeccccccccCccccccccCCCCCCCcCC---H----HHH
Confidence            468999999999998     88999999965   2 49999999998664432   2235679999999   9    776


Q ss_pred             hc-----------cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhc
Q psy3184          82 IN-----------VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKE  136 (185)
Q Consensus        82 ~~-----------~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~  136 (185)
                      ..           ..++.              ++|..||....+.......+. .......+|...+.++.+||.+||..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~  279 (313)
T 3cek_A          201 KDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAII-DPNHEIEFPDIPEKDLQDVLKCCLKR  279 (313)
T ss_dssp             TTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHH-CTTSCCCCCCCSCHHHHHHHHHHTCS
T ss_pred             hhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH-hcccccCCcccchHHHHHHHHHHccC
Confidence            53           12332              899999983334444555555 33345667778899999999999999


Q ss_pred             CcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         137 SPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       137 dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      ||.+||     ++.++++||||+..
T Consensus       280 dp~~Rp-----s~~ell~h~~~~~~  299 (313)
T 3cek_A          280 DPKQRI-----SIPELLAHPYVQIQ  299 (313)
T ss_dssp             STTTSC-----CHHHHHTSHHHHCC
T ss_pred             CcccCc-----CHHHHhcCccccCC
Confidence            999999     66999999999653

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.76  E-value=8.3e-19  Score=142.46  Aligned_cols=137  Identities=14%  Similarity=0.200  Sum_probs=97.7

Q ss_pred             cHHHHHHHHHHHhhc------CCCCCceEEccCC---CCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA------EYKADNYVITEGE---AGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~------~lkp~Nili~~~~---~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||+|||++      ||||+||+++.+.   ....++|+|||.+.....  .....+||+.|+|   |    |+
T Consensus       136 i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~~t~~y~a---P----E~  206 (373)
T 1q8y_A          136 ISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDE--HYTNSIQTREYRS---P----EV  206 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTB--CCCSCCSCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCC--CCCCCCCCccccC---c----HH
Confidence            478999999999985      7999999996431   112489999999976543  3345689999999   9    88


Q ss_pred             hhccCcce--------------eccCCCCCCCCCh------HHHHHHHHh-cC---------------------------
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDP------MQTYNMIIN-VG---------------------------  112 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~------~~~~~~i~~-~~---------------------------  112 (185)
                      +.+..|+.              ++|..||. +.+.      ......+.. .+                           
T Consensus       207 ~~~~~~~~~~Di~slG~il~el~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  285 (373)
T 1q8y_A          207 LLGAPWGCGADIWSTACLIFELITGDFLFE-PDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNIS  285 (373)
T ss_dssp             HHTCCCCTHHHHHHHHHHHHHHHHSSCCC----------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCC
T ss_pred             HhCCCCCchHhHHHHHHHHHHHHhCCCCCC-CCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccc
Confidence            87766654              89999997 5431      111211110 00                           


Q ss_pred             -----------CCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         113 -----------IDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       113 -----------~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                                 .....+|..++.++.+||.+||..||.+||     ++.++++||||++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp-----t~~ell~hp~f~~~  340 (373)
T 1q8y_A          286 KLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA-----DAGGLVNHPWLKDT  340 (373)
T ss_dssp             CCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB-----CHHHHHTCGGGTTC
T ss_pred             cccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccC-----CHHHHhhChhhhcc
Confidence                       001234455678999999999999999999     66999999999864

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.75  E-value=3.2e-18  Score=136.06  Aligned_cols=136  Identities=13%  Similarity=0.184  Sum_probs=95.1

Q ss_pred             ccHHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||.|||+.      ||||+||+++.+.   .++|+|||.+.............||+.|+|   |    |++.
T Consensus       128 ~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  197 (318)
T 2dyl_A          128 KMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERG---QIKLCDFGISGRLVDDKAKDRSAGCAAYMA---P----ERID  197 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTS---CEEECCCTTC--------------CCTTCC---H----HHHC
T ss_pred             HHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCC---CEEEEECCCchhccCCccccccCCCccccC---h----hhcc
Confidence            3478999999999973      7899999998753   499999999987655555556789999999   9    8774


Q ss_pred             -----ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcCcc
Q psy3184          83 -----NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        83 -----~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~~R  141 (185)
                           ...++.              ++|..||....+..+....+.. + ....+|  ..++.++.+||.+||..||.+|
T Consensus       198 ~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~li~~~l~~dp~~R  275 (318)
T 2dyl_A          198 PPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQ-E-EPPLLPGHMGFSGDFQSFVKDCLTKDHRKR  275 (318)
T ss_dssp             --------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHH-S-CCCCCCSSSCCCHHHHHHHHHHTCSCTTTS
T ss_pred             cccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhc-c-CCCCCCccCCCCHHHHHHHHHHccCChhHC
Confidence                 222332              8899999833455566666663 2 233344  4589999999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCCC
Q psy3184         142 LGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       142 ~~~~~~~~~~ll~hp~f~~~  161 (185)
                      |     ++.++++||||+..
T Consensus       276 p-----s~~~ll~h~~~~~~  290 (318)
T 2dyl_A          276 P-----KYNKLLEHSFIKRY  290 (318)
T ss_dssp             C-----CHHHHTTSHHHHHH
T ss_pred             c-----CHHHHhhCHHHHhc
Confidence            9     66999999999643

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.75  E-value=8.4e-19  Score=143.29  Aligned_cols=137  Identities=13%  Similarity=0.201  Sum_probs=98.5

Q ss_pred             ccHHHHHHHHHHHhhc------CCCCCceEEccCC---------------------------------------------
Q psy3184           9 LDTLQVKEMVESMHQA------EYKADNYVITEGE---------------------------------------------   37 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~------~lkp~Nili~~~~---------------------------------------------   37 (185)
                      ..+.||+.||+|||++      ||||+||+++.+.                                             
T Consensus       150 ~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (397)
T 1wak_A          150 KIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKN  229 (397)
T ss_dssp             HHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGG
T ss_pred             HHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCccccccccccccccc
Confidence            3478999999999975      7899999998642                                             


Q ss_pred             -CCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhccCcce--------------eccCCCCCCCCCh-
Q psy3184          38 -AGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDP-  101 (185)
Q Consensus        38 -~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~-  101 (185)
                       ....++|+|||.+.....  .....+||+.|+|   |    |++.+..|+.              ++|..||. +.+. 
T Consensus       230 ~~~~~~kl~DfG~a~~~~~--~~~~~~gt~~y~a---P----E~~~~~~~~~~~DiwslG~il~elltg~~pf~-~~~~~  299 (397)
T 1wak_A          230 AEKLKVKIADLGNACWVHK--HFTEDIQTRQYRS---L----EVLIGSGYNTPADIWSTACMAFELATGDYLFE-PHSGE  299 (397)
T ss_dssp             GGGCCEEECCGGGCEETTB--CSCSCCSCGGGCC---H----HHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCC-CCCCS
T ss_pred             ccccceEeccccccccccc--cCccCCCCCcccC---C----hhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCC-CCccc
Confidence             001499999999976543  3445689999999   9    9888776665              89999997 4431 


Q ss_pred             -----HHHHHHHHh-cCC--------------------------------------CccCCCCCCCHHHHHHHHHHhhcC
Q psy3184         102 -----MQTYNMIIN-VGI--------------------------------------DKIPFPKHVTRTAQSLIKALCKES  137 (185)
Q Consensus       102 -----~~~~~~i~~-~~~--------------------------------------~~~~~p~~~s~~~~~li~~~l~~d  137 (185)
                           ......+.. .+.                                      ....++...+.++.+||.+||..|
T Consensus       300 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~d  379 (397)
T 1wak_A          300 EYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELI  379 (397)
T ss_dssp             SSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSS
T ss_pred             ccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccC
Confidence                 122222210 000                                      011223344678899999999999


Q ss_pred             cCcccCCCCCChhhhhcCCCCCC
Q psy3184         138 PAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       138 p~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                      |.+||     ++.++++||||++
T Consensus       380 P~~Rp-----t~~e~l~hp~~~~  397 (397)
T 1wak_A          380 PEKRA-----TAAECLRHPWLNS  397 (397)
T ss_dssp             GGGSC-----CHHHHHTSGGGGC
T ss_pred             hhhcC-----CHHHHhhCccccC
Confidence            99999     6699999999963

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.73  E-value=5.2e-18  Score=132.61  Aligned_cols=133  Identities=13%  Similarity=0.201  Sum_probs=106.6

Q ss_pred             cHHHHHHHHHHHhhc----------CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccc
Q psy3184          10 DTLQVKEMVESMHQA----------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~----------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      .+.||+.||+|||+.          ||+|+||+++.+.   .++|+|||.+....... ......||+.|+|   |    
T Consensus       116 i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~a---P----  185 (279)
T 2w5a_A          116 VMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQ---NVKLGDFGLARILNHDTSFAKTFVGTPYYMS---P----  185 (279)
T ss_dssp             HHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSS---CEEECCCCHHHHC---CHHHHHHHSCCTTCC---H----
T ss_pred             HHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCC---CEEEecCchheeeccccccccccCCCccccC---h----
Confidence            468999999999974          6899999998753   49999999987654332 2345689999999   9    


Q ss_pred             cchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          79 NMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        79 E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      |++....++.              ++|..||. ..+..++...+. .+ ....+|..++.++.++|.+||..||.+||  
T Consensus       186 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp--  260 (279)
T 2w5a_A          186 EQMNRMSYNEKSDIWSLGCLLYELCALMPPFT-AFSQKELAGKIR-EG-KFRRIPYRYSDELNEIITRMLNLKDYHRP--  260 (279)
T ss_dssp             HHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSC--
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHHCCCCCc-ccCHHHHHHHHh-hc-ccccCCcccCHHHHHHHHHHcCCCcccCC--
Confidence            8887665554              89999999 888777777777 33 34467778999999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQG  160 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~  160 (185)
                         ++.++++|+|+..
T Consensus       261 ---s~~~ll~~~~~~~  273 (279)
T 2w5a_A          261 ---SVEEILENPLILE  273 (279)
T ss_dssp             ---CHHHHHTSTTCCG
T ss_pred             ---CHHHHHhChhhhh
Confidence               6699999999964

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.73  E-value=9.9e-19  Score=145.07  Aligned_cols=125  Identities=14%  Similarity=0.153  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh---
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII---   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~---   82 (185)
                      +.||+.||+|||++     ||||+||+++.+.   .++|+|||+++....  .....+| +.|+|   |    |++.   
T Consensus       217 ~~qi~~aL~~LH~~~iiHrDiKp~NILl~~~~---~~kL~DFG~a~~~~~--~~~~~~g-~~y~a---P----E~~~~~~  283 (413)
T 3dzo_A          217 TLQVIRLLASLHHYGLVHTYLRPVDIVLDQRG---GVFLTGFEHLVRDGA--SAVSPIG-RGFAP---P----ETTAERM  283 (413)
T ss_dssp             HHHHHHHHHHHHHTTEECSCCCGGGEEECTTC---CEEECCGGGCEETTE--EECCCCC-TTTCC---H----HHHHHHT
T ss_pred             HHHHHHHHHHHHhCCcccCCcccceEEEecCC---eEEEEeccceeecCC--ccccCCC-CceeC---c----hhhhccc
Confidence            58999999999998     8999999999863   399999999876533  3556788 99999   9    8772   


Q ss_pred             -------ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcc
Q psy3184          83 -------NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        83 -------~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R  141 (185)
                             ...|+.              ++|..||. +.+.......+.       .....+++++.+||.+||..||.+|
T Consensus       284 ~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~-~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~l~~dP~~R  355 (413)
T 3dzo_A          284 LPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNT-DDAALGGSEWIF-------RSCKNIPQPVRALLEGFLRYPKEDR  355 (413)
T ss_dssp             STTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCC-TTGGGSCSGGGG-------SSCCCCCHHHHHHHHHHTCSSGGGS
T ss_pred             cccccccCcCCCchhhHHHHHHHHHHHHHCCCCCC-CcchhhhHHHHH-------hhcccCCHHHHHHHHHHccCChhhC
Confidence                   223333              88999998 665544443333       1123578999999999999999999


Q ss_pred             cCCCCCChhhhhcCCCCCCC
Q psy3184         142 LGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       142 ~~~~~~~~~~ll~hp~f~~~  161 (185)
                      |     ++.++++||||+.+
T Consensus       356 p-----t~~~~l~~~~~~~~  370 (413)
T 3dzo_A          356 L-----LPLQAMETPEYEQL  370 (413)
T ss_dssp             C-----CHHHHTTSHHHHHH
T ss_pred             c-----CHHHHHhCHHHHHH
Confidence            9     66999999999765

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.73  E-value=4e-18  Score=135.94  Aligned_cols=147  Identities=12%  Similarity=0.115  Sum_probs=111.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++......   ......||+.|+|   |    |++
T Consensus       143 i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  212 (322)
T 1p4o_A          143 MAGEIADGMAYLNANKFVHRDLAARNCMVAEDF---TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMS---P----ESL  212 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTC---CEEECCTTCCCGGGGGGCEEGGGSSEECGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHCCCccCCCccceEEEcCCC---eEEECcCccccccccccccccccCCCCCCCccC---h----hhh
Confidence            367999999999997     8899999999853   49999999987554322   2234467889999   9    888


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..++.              ++ |..||. +.+..+....+.. + .....|..++.++.+||.+||..||.+||    
T Consensus       213 ~~~~~~~~~Di~slG~il~el~~~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rp----  285 (322)
T 1p4o_A          213 KDGVFTTYSDVWSFGVVLWEIATLAEQPYQ-GLSNEQVLRFVME-G-GLLDKPDNCPDMLFELMRMCWQYNPKMRP----  285 (322)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHHTSCCTTT-TSCHHHHHHHHHT-T-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             ccCCCCchhhHHHHHHHHHHHHhcCCCccc-cCCHHHHHHHHHc-C-CcCCCCCCCCHHHHHHHHHHcCCCcccCc----
Confidence            7665554              66 899999 8888888877772 2 34566778999999999999999999999    


Q ss_pred             CChhhhhcC------CCCCCCChhhhhcccCCCC
Q psy3184         147 GGIVDIKKH------KWFQGFDWDGLRNQTLTPP  174 (185)
Q Consensus       147 ~~~~~ll~h------p~f~~~~~~~~~~~~~~~p  174 (185)
                       ++.++++|      ++|+.++|.......+++|
T Consensus       286 -s~~e~l~~L~~~~~~~~~~~~~~~~~~~~~~~~  318 (322)
T 1p4o_A          286 -SFLEIISSIKEEMEPGFREVSFYYSEENKLPEP  318 (322)
T ss_dssp             -CHHHHHHHHGGGSCTTHHHHCSTTSTTC-----
T ss_pred             -CHHHHHHHHHHhhccCCcccccccccccCCCCh
Confidence             55887765      7887777776555544443

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.73  E-value=1.7e-17  Score=138.45  Aligned_cols=136  Identities=18%  Similarity=0.288  Sum_probs=93.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCC----------CCCeeEEcccCceeEeecCc-----ccccccCCcccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGE----------AGNDLFVSAEGEFQVIKDGK-----ILRLLSGRPPFC   69 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~----------~~~~i~l~d~g~~~~~~~~~-----~~~~~~gt~~y~   69 (185)
                      .+.||+.||+|||++     ||||+||+++.+.          ....++|+|||.++....+.     .....+||+.|+
T Consensus       120 i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~  199 (434)
T 2rio_A          120 LLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWR  199 (434)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTS
T ss_pred             HHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCcc
Confidence            578999999999998     8999999997531          12359999999998775532     233568999999


Q ss_pred             ccCCCcccccchhc-------cCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCcc-CC----CCCC
Q psy3184          70 VMNDPMQTYNMIIN-------VGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKI-PF----PKHV  122 (185)
Q Consensus        70 a~~~P~~~~E~~~~-------~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~-~~----p~~~  122 (185)
                      |   |    |++.+       ..++.              ++ |..||. ......  ..+. .+.... ..    +..+
T Consensus       200 a---P----E~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~-~~~~~~--~~i~-~~~~~~~~~~~~~~~~~  268 (434)
T 2rio_A          200 A---P----ELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFG-DKYSRE--SNII-RGIFSLDEMKCLHDRSL  268 (434)
T ss_dssp             C---H----HHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTC-STTTHH--HHHH-HTCCCCCCCTTCCCHHH
T ss_pred             C---H----HHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCC-CchhhH--HHHh-cCCCCcccccccccccc
Confidence            9   9    87754       23333              66 899997 443332  2333 111111 11    1235


Q ss_pred             CHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       123 s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      +.++.+||.+||..||.+||     ++.++++||||.+.
T Consensus       269 ~~~~~~li~~~L~~dP~~Rp-----s~~eil~hp~f~~~  302 (434)
T 2rio_A          269 IAEATDLISQMIDHDPLKRP-----TAMKVLRHPLFWPK  302 (434)
T ss_dssp             HHHHHHHHHHHTCSSGGGSC-----CHHHHHTSGGGSCH
T ss_pred             hHHHHHHHHHHhhCChhhCC-----CHHHHHhCCccCCc
Confidence            68999999999999999999     66999999999754

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.73  E-value=1.1e-17  Score=141.56  Aligned_cols=155  Identities=17%  Similarity=0.190  Sum_probs=107.8

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--------cccccCCccccccCCCc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--------LRLLSGRPPFCVMNDPM   75 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--------~~~~~gt~~y~a~~~P~   75 (185)
                      ..+.||+.||+|||++     ||||+||++..+.....++|+|||+++.......        ....+||+.|+|   | 
T Consensus       107 ~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~a---P-  182 (483)
T 3sv0_A          107 MLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYAS---V-  182 (483)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCC---H-
T ss_pred             HHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccC---H-
Confidence            3478999999999998     8999999995221122499999999987755322        226789999999   9 


Q ss_pred             ccccchhccCcce--------------eccCCCCCCCCC---hHHHHHHHHhcC--CCccCCCCCCCHHHHHHHHHHhhc
Q psy3184          76 QTYNMIINVGIDN--------------IFSRPPFCVMND---PMQTYNMIINVG--IDKIPFPKHVTRTAQSLIKALCKE  136 (185)
Q Consensus        76 ~~~E~~~~~~~~~--------------l~g~~Pf~~~~~---~~~~~~~i~~~~--~~~~~~p~~~s~~~~~li~~~l~~  136 (185)
                         |++.+..|+.              ++|..||. +..   ..+.+..+....  .....++..++.++.+||.+||..
T Consensus       183 ---E~~~~~~~s~~sDvwSlGvil~elltG~~Pf~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~  258 (483)
T 3sv0_A          183 ---NTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQ-GLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSL  258 (483)
T ss_dssp             ---HHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTS-SCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTC
T ss_pred             ---HHhcCCCCChHHHHHHHHHHHHHHHhCCCCCc-cccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcC
Confidence               8887766654              89999998 533   334444443100  011122356899999999999999


Q ss_pred             CcCcccCCCCCChhhhh----------cCCCCCCCChhhhhcccCCCCcc
Q psy3184         137 SPAERLGYQRGGIVDIK----------KHKWFQGFDWDGLRNQTLTPPII  176 (185)
Q Consensus       137 dp~~R~~~~~~~~~~ll----------~hp~f~~~~~~~~~~~~~~~p~~  176 (185)
                      ||.+||++     .+|+          .++|+..++|..+..+....+..
T Consensus       259 dP~~RPs~-----~el~~~L~~l~~~~~~~~~~~~dW~~~~~~~~~~~~~  303 (483)
T 3sv0_A          259 RFDDKPDY-----SYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIASA  303 (483)
T ss_dssp             CTTCCCCH-----HHHHHHHHHHHHHTTCCCSSCCHHHHHTC--------
T ss_pred             ChhhCcCH-----HHHHHHHHHHHHHcCCCccCCcCchhhccccccccCC
Confidence            99999955     4433          48999999999987776554443

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.72  E-value=1.4e-17  Score=132.28  Aligned_cols=129  Identities=20%  Similarity=0.256  Sum_probs=101.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||++     ||||+||+++.+. + .++|+|||.+...... ......||+.|+|   |    |++...
T Consensus       144 ~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~-~-~~kl~dfg~~~~~~~~-~~~~~~~~~~y~a---P----E~~~~~  213 (312)
T 2iwi_A          144 FFGQVVAAIQHCHSRGVVHRDIKDENILIDLRR-G-CAKLIDFGSGALLHDE-PYTDFDGTRVYSP---P----EWISRH  213 (312)
T ss_dssp             HHHHHHHHHHHHHHHTEECCCCSGGGEEEETTT-T-EEEECCCSSCEECCSS-CBCCCCSCTTTSC---H----HHHHHS
T ss_pred             HHHHHHHHHHHHHHCCeeecCCChhhEEEeCCC-C-eEEEEEcchhhhcccC-cccccCCcccccC---c----eeeecC
Confidence            478999999999997     8999999998321 2 4999999999876543 3446789999999   9    877655


Q ss_pred             Ccce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .+..               ++|..||. ..  .    .+.   .....+|..++.++.+||.+||..||.+||     ++
T Consensus       214 ~~~~~~~Di~slG~il~~l~~g~~pf~-~~--~----~~~---~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~  278 (312)
T 2iwi_A          214 QYHALPATVWSLGILLYDMVCGDIPFE-RD--Q----EIL---EAELHFPAHVSPDCCALIRRCLAPKPSSRP-----SL  278 (312)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHSSCSCC-SH--H----HHH---HTCCCCCTTSCHHHHHHHHHHTCSSTTTSC-----CH
T ss_pred             CCCCccchHHHHHHHHHHHHHCCCCCC-Ch--H----HHh---hhccCCcccCCHHHHHHHHHHccCChhhCc-----CH
Confidence            4422               89999997 32  1    223   135677888999999999999999999999     66


Q ss_pred             hhhhcCCCCCCCCh
Q psy3184         150 VDIKKHKWFQGFDW  163 (185)
Q Consensus       150 ~~ll~hp~f~~~~~  163 (185)
                      .++++||||+....
T Consensus       279 ~e~l~~~~~~~~~~  292 (312)
T 2iwi_A          279 EEILLDPWMQTPAE  292 (312)
T ss_dssp             HHHHHSTTTCC---
T ss_pred             HHHhcChhhcCchh
Confidence            99999999987543

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.72  E-value=1.7e-17  Score=130.56  Aligned_cols=143  Identities=14%  Similarity=0.169  Sum_probs=97.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec---------------CcccccccCCcccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD---------------GKILRLLSGRPPFC   69 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~---------------~~~~~~~~gt~~y~   69 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.+.....               ........||+.|+
T Consensus       121 i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  197 (303)
T 1zy4_A          121 LFRQILEALSYIHSQGIIHRDLKPMNIFIDESR---NVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYV  197 (303)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTS---CEEECCCCCCSCTTC-------------------------CTTS
T ss_pred             HHHHHHHHHHHHHhCCeecccCCHHhEEEcCCC---CEEEeeCcchhhcccccchhccccccccccccccccCCCccccc
Confidence            467999999999998     7899999998753   499999999875432               12234567999999


Q ss_pred             ccCCCcccccchhcc-Ccce-----------eccCCCCCCCCChHHHHHHHHhcCC--CccCCCCCCCHHHHHHHHHHhh
Q psy3184          70 VMNDPMQTYNMIINV-GIDN-----------IFSRPPFCVMNDPMQTYNMIINVGI--DKIPFPKHVTRTAQSLIKALCK  135 (185)
Q Consensus        70 a~~~P~~~~E~~~~~-~~~~-----------l~g~~Pf~~~~~~~~~~~~i~~~~~--~~~~~p~~~s~~~~~li~~~l~  135 (185)
                      |   |    |++.+. .++.           ..-..||..+.+.......+. ...  .+..++...+..+++||.+||.
T Consensus       198 a---P----E~~~~~~~~~~~~Di~slG~il~~l~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~  269 (303)
T 1zy4_A          198 A---T----EVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLR-SVSIEFPPDFDDNKMKVEKKIIRLLID  269 (303)
T ss_dssp             C---H----HHHTSCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHH-STTCCCCTTCCTTTSHHHHHHHHHHTC
T ss_pred             C---c----ccccCCCCCcchhhHHHHHHHHHHHHhccCCchhHHHHHHhcc-ccccccCccccccchHHHHHHHHHHHh
Confidence            9   9    887653 3443           001126652334445555555 221  1223345677889999999999


Q ss_pred             cCcCcccCCCCCChhhhhcCCCCCCCChhhhhc
Q psy3184         136 ESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRN  168 (185)
Q Consensus       136 ~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~  168 (185)
                      .||.+||     ++.++++||||+...++....
T Consensus       270 ~dp~~Rp-----s~~~ll~h~~~~~~~~~~~~~  297 (303)
T 1zy4_A          270 HDPNKRP-----GARTLLNSGWLPVKHQDEVIK  297 (303)
T ss_dssp             SSGGGSC-----CHHHHHHSSCSCCCCHHHHHH
T ss_pred             cCcccCc-----CHHHHhCCCCcCCCChHHHHH
Confidence            9999999     669999999999888876544

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.72  E-value=7.7e-18  Score=134.14  Aligned_cols=134  Identities=13%  Similarity=0.173  Sum_probs=97.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC----cccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG----KILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~----~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.+..+...    ......+||+.|+|   |    |+
T Consensus       121 ~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~a---P----E~  190 (311)
T 3ork_A          121 VIADACQALNFSHQNGIIHRDVKPANIMISATN---AVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLS---P----EQ  190 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTS---CEEECCCSCC------------------CCTTCC---H----HH
T ss_pred             HHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCC---CEEEeeccCcccccccccccccccccCcCcccCC---H----HH
Confidence            468999999999998     8899999998753   4999999999866443    12334679999999   9    88


Q ss_pred             hhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCC-CccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI-DKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~-~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +.+..++.              ++|..||. +.+.......+..... .....+..++.++.+||.+||..||.+||+. 
T Consensus       191 ~~~~~~~~~~Di~slG~~l~~ll~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~-  268 (311)
T 3ork_A          191 ARGDSVDARSDVYSLGCVLYEVLTGEPPFT-GDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQT-  268 (311)
T ss_dssp             HHTCCCCHHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSS-
T ss_pred             hcCCCCCchHhHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhhChhh-
Confidence            87766654              89999999 8877777666552211 0111224689999999999999999999955 


Q ss_pred             CCChhhhhcCCCCC
Q psy3184         146 RGGIVDIKKHKWFQ  159 (185)
Q Consensus       146 ~~~~~~ll~hp~f~  159 (185)
                          .+++.|+|++
T Consensus       269 ----~~~l~~~l~~  278 (311)
T 3ork_A          269 ----AAEMRADLVR  278 (311)
T ss_dssp             ----HHHHHHHHHH
T ss_pred             ----HHHHHHHHHH
Confidence                9999999985

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.72  E-value=3.1e-17  Score=130.92  Aligned_cols=128  Identities=13%  Similarity=0.225  Sum_probs=94.7

Q ss_pred             cHHHHHHHHHHHhhc-------CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||+.       ||||+||+++.+.   .++|+|||+++..... .......||+.|+|   |    |++
T Consensus       142 i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~---~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~a---P----E~~  211 (309)
T 3p86_A          142 MAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKY---TVKVCDFGLSRLKASTFLSSKSAAGTPEWMA---P----EVL  211 (309)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTC---CEEECCCC-----------------CCTTSC---H----HHH
T ss_pred             HHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCC---cEEECCCCCCccccccccccccCCCCccccC---h----hhh
Confidence            367999999999986       5799999998853   4999999999755433 22445789999999   9    888


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .+..++.              ++|..||. +.+..+....+. .......+|..+++++.+||.+||..||.+||     
T Consensus       212 ~~~~~~~~~DiwslG~il~elltg~~Pf~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp-----  284 (309)
T 3p86_A          212 RDEPSNEKSDVYSFGVILWELATLQQPWG-NLNPAQVVAAVG-FKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRP-----  284 (309)
T ss_dssp             TTCCCCTTHHHHHHHHHHHHHHHCCCTTT-TSCHHHHHHHHH-HSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             cCCCCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHH-hcCCCCCCCccCCHHHHHHHHHHccCChhhCc-----
Confidence            7765554              89999999 888777777665 23456788889999999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++.++++
T Consensus       285 s~~~ll~  291 (309)
T 3p86_A          285 SFATIMD  291 (309)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            5588876

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.72  E-value=1.3e-17  Score=136.11  Aligned_cols=135  Identities=10%  Similarity=0.101  Sum_probs=109.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+||+++.+.....++|+|||+++.....   .......||+.|+|   |    |++
T Consensus       186 i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~a---P----E~~  258 (367)
T 3l9p_A          186 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMP---P----EAF  258 (367)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEEC---H----HHh
Confidence            478999999999998     89999999996544445999999998754321   23345678999999   9    888


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..|+.              ++ |..||. +.+..++...+.. + .....|..++.++.+||.+||..||.+||    
T Consensus       259 ~~~~~~~~~DvwslG~il~ellt~g~~pf~-~~~~~~~~~~i~~-~-~~~~~~~~~~~~l~~li~~~l~~dP~~Rp----  331 (367)
T 3l9p_A          259 MEGIFTSKTDTWSFGVLLWEIFSLGYMPYP-SKSNQEVLEFVTS-G-GRMDPPKNCPGPVYRIMTQCWQHQPEDRP----  331 (367)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCSST-TCCHHHHHHHHHT-T-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHHc-C-CCCCCCccCCHHHHHHHHHHcCCCHhHCc----
Confidence            7766665              55 999999 8888888888873 2 35666788999999999999999999999    


Q ss_pred             CChhhhhcCCCCC
Q psy3184         147 GGIVDIKKHKWFQ  159 (185)
Q Consensus       147 ~~~~~ll~hp~f~  159 (185)
                       ++.+++++.++-
T Consensus       332 -s~~eil~~l~~~  343 (367)
T 3l9p_A          332 -NFAIILERIEYC  343 (367)
T ss_dssp             -CHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHH
Confidence             669999987763

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.71  E-value=1.9e-17  Score=130.12  Aligned_cols=141  Identities=18%  Similarity=0.254  Sum_probs=101.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--------ccccccCCccccccCCCcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--------ILRLLSGRPPFCVMNDPMQ   76 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--------~~~~~~gt~~y~a~~~P~~   76 (185)
                      .+.||+.||.|||++     ||||+||++..+.....++|+|||.++......        ......||+.|+|   |  
T Consensus       110 i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~a---P--  184 (296)
T 4hgt_A          110 LADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYAS---I--  184 (296)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCC---H--
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccc---h--
Confidence            478999999999998     899999999421122249999999998775532        2235689999999   9  


Q ss_pred             cccchhccCcce--------------eccCCCCCCCCCh---HHHHHHHHhcCCCccCCC-----CCCCHHHHHHHHHHh
Q psy3184          77 TYNMIINVGIDN--------------IFSRPPFCVMNDP---MQTYNMIINVGIDKIPFP-----KHVTRTAQSLIKALC  134 (185)
Q Consensus        77 ~~E~~~~~~~~~--------------l~g~~Pf~~~~~~---~~~~~~i~~~~~~~~~~p-----~~~s~~~~~li~~~l  134 (185)
                        |++.+..++.              ++|..||. +.+.   ...+..+. .  .....|     ..+++++.+||.+||
T Consensus       185 --E~~~~~~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~li~~~l  258 (296)
T 4hgt_A          185 --NTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQ-GLKAATKRQKYERIS-E--KKMSTPIEVLCKGYPSEFATYLNFCR  258 (296)
T ss_dssp             --HHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTS-SCCCSSSSSHHHHHH-H--HHHHSCHHHHTTTSCHHHHHHHHHHH
T ss_pred             --HHhcCCCCCchhHHHHHHHHHHHHhcCCCCCc-ccchhhhhhhhhhhh-c--ccccchhhhhhccCCHHHHHHHHHHH
Confidence              8887766654              89999997 4322   22333333 1  122223     568999999999999


Q ss_pred             hcCcCcccCCCCCChhhhhc----------CCCCCCCChhhh
Q psy3184         135 KESPAERLGYQRGGIVDIKK----------HKWFQGFDWDGL  166 (185)
Q Consensus       135 ~~dp~~R~~~~~~~~~~ll~----------hp~f~~~~~~~~  166 (185)
                      ..||.+||+     +.++++          ..+...++|..+
T Consensus       259 ~~~p~~Rpt-----~~~l~~~l~~~~~~~~~~~~~~~dw~~~  295 (296)
T 4hgt_A          259 SLRFDDKPD-----YSYLRQLFRNLFHRQGFSYDYVFDWNML  295 (296)
T ss_dssp             TSCTTCCCC-----HHHHHHHHHHHHHHHTCCTTCCCGGGGC
T ss_pred             hcCCCCCCC-----HHHHHHHHHHHHHHhCCCccCccchhhc
Confidence            999999994     466553          456677788754

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.71  E-value=4e-17  Score=133.52  Aligned_cols=128  Identities=13%  Similarity=0.151  Sum_probs=103.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++......   ......||+.|+|   |    |++
T Consensus       208 i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~---~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~a---P----E~~  277 (370)
T 2psq_A          208 CTYQLARGMEYLASQKCIHRDLAARNVLVTENN---VMKIADFGLARDINNIDYYKKTTNGRLPVKWMA---P----EAL  277 (370)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCGGGEEECTTC---CEEECCCSSCEETTCCCTTCTTTTTTSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCeeccccchhhEEECCCC---CEEEccccCCcccCcccceecccCCCcccceEC---H----hHh
Confidence            367999999999998     8999999998753   49999999998664422   2334567889999   9    888


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..|+.              ++ |..||. +.+..+++..+. .+ .....|..++.++.++|.+||..||.+||    
T Consensus       278 ~~~~~~~~~DvwslG~il~ellt~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~~l~~dP~~Rp----  350 (370)
T 2psq_A          278 FDRVYTHQSDVWSFGVLMWEIFTLGGSPYP-GIPVEELFKLLK-EG-HRMDKPANCTNELYMMMRDCWHAVPSQRP----  350 (370)
T ss_dssp             HTCCCCHHHHHHHHHHHHHHHHTTSCCSST-TCCGGGHHHHHH-TT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSC----
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHHHHh-cC-CCCCCCCCCCHHHHHHHHHHcCCChhhCc----
Confidence            7766664              66 999999 888888887777 33 35677788999999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.+++++
T Consensus       351 -t~~ell~~  358 (370)
T 2psq_A          351 -TFKQLVED  358 (370)
T ss_dssp             -CHHHHHHH
T ss_pred             -CHHHHHHH
Confidence             55877753

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.71  E-value=5.6e-18  Score=135.60  Aligned_cols=136  Identities=14%  Similarity=0.221  Sum_probs=81.7

Q ss_pred             ccHHHHHHHHHHHhhc------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.|++.||.|||+.      ||||+||+++.+.   .++|+|||.++............||+.|+|   |    |++.
T Consensus       129 ~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~---~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  198 (327)
T 3aln_A          129 KITLATVKALNHLKENLKIIHRDIKPSNILLDRSG---NIKLCDFGISGQLVDSIAKTRDAGCRPYMA---P----ERID  198 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTT---EEEECCCSSSCC------------------------------
T ss_pred             HHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCC---CEEEccCCCceecccccccccCCCCccccC---c----eeec
Confidence            3478999999999985      7899999998753   499999999987655444445689999999   9    7763


Q ss_pred             ----ccCcce--------------eccCCCCCCCCC-hHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcC
Q psy3184          83 ----NVGIDN--------------IFSRPPFCVMND-PMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        83 ----~~~~~~--------------l~g~~Pf~~~~~-~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~  139 (185)
                          ...|+.              ++|..||. +.+ ..+....+. .+ ..+.++    ..++.++.+||.+||..||.
T Consensus       199 ~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~li~~~l~~dp~  275 (327)
T 3aln_A          199 PSASRQGYDVRSDVWSLGITLYELATGRFPYP-KWNSVFDQLTQVV-KG-DPPQLSNSEEREFSPSFINFVNLCLTKDES  275 (327)
T ss_dssp             -------CCSHHHHHHHHHHHHHHHHSCCCSS-CC-------CCCC-CS-CCCCCCCCSSCCCCHHHHHHHHHHTCSSGG
T ss_pred             cccCcCCCCchhhHHHHHHHHHHHHHCCCCCC-CcchHHHHHHHHh-cC-CCCCCCCcccccCCHHHHHHHHHHhhCChh
Confidence                333443              88999998 432 223222222 11 122232    35899999999999999999


Q ss_pred             cccCCCCCChhhhhcCCCCCCCC
Q psy3184         140 ERLGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       140 ~R~~~~~~~~~~ll~hp~f~~~~  162 (185)
                      +||     ++.++++||||....
T Consensus       276 ~Rp-----s~~ell~hp~~~~~~  293 (327)
T 3aln_A          276 KRP-----KYKELLKHPFILMYE  293 (327)
T ss_dssp             GSC-----CHHHHTTSHHHHHHH
T ss_pred             hCc-----CHHHHHhChHHHHhH
Confidence            999     669999999996543

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.70  E-value=3.6e-17  Score=131.27  Aligned_cols=147  Identities=15%  Similarity=0.203  Sum_probs=105.6

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCC--CeeEEcccCceeEeecCcc--------cccccCCccccccCC
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAG--NDLFVSAEGEFQVIKDGKI--------LRLLSGRPPFCVMND   73 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~--~~i~l~d~g~~~~~~~~~~--------~~~~~gt~~y~a~~~   73 (185)
                      ..+.||+.||+|||+.     ||||+||+++.+...  ..++|+|||+++.......        ....+||+.|+|   
T Consensus       109 ~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~a---  185 (330)
T 2izr_A          109 MIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMS---  185 (330)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCC---
T ss_pred             HHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccC---
Confidence            3578999999999998     899999999875321  1289999999987654321        246789999999   


Q ss_pred             CcccccchhccCcce--------------eccCCCCCCCC---ChHHHHHHHHhcCCCccCCC-----CCCCHHHHHHHH
Q psy3184          74 PMQTYNMIINVGIDN--------------IFSRPPFCVMN---DPMQTYNMIINVGIDKIPFP-----KHVTRTAQSLIK  131 (185)
Q Consensus        74 P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~---~~~~~~~~i~~~~~~~~~~p-----~~~s~~~~~li~  131 (185)
                      |    |++.+..|+.              ++|..||. +.   +..+.+..+. ..  ....|     ..++ ++.+++.
T Consensus       186 P----E~~~~~~~~~~~Di~slG~il~ell~g~~Pf~-~~~~~~~~~~~~~i~-~~--~~~~~~~~~~~~~p-~~~~li~  256 (330)
T 2izr_A          186 I----NTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQ-GLKADTLKERYQKIG-DT--KRATPIEVLCENFP-EMATYLR  256 (330)
T ss_dssp             H----HHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTT-TCCCSSHHHHHHHHH-HH--HHHSCHHHHTTTCH-HHHHHHH
T ss_pred             h----HHHcCCCCCchhHHHHHHHHHHHHhcCCCCcc-ccccccHHHHHHHHH-hh--hccCCHHHHhccCh-HHHHHHH
Confidence            9    9888776664              89999998 53   3445555554 11  22222     2244 9999999


Q ss_pred             HHhhcCcCcccCCCCCChhhhhc----------CCCCCCCChhhhhcccCCCCc
Q psy3184         132 ALCKESPAERLGYQRGGIVDIKK----------HKWFQGFDWDGLRNQTLTPPI  175 (185)
Q Consensus       132 ~~l~~dp~~R~~~~~~~~~~ll~----------hp~f~~~~~~~~~~~~~~~p~  175 (185)
                      .||..||.+||++     .++.+          ..+...++|.   .+..++|+
T Consensus       257 ~~l~~~p~~RP~~-----~~l~~~l~~~~~~~~~~~~~~~dw~---~~~~~~p~  302 (330)
T 2izr_A          257 YVRRLDFFEKPDY-----DYLRKLFTDLFDRKGYMFDYEYDWI---GKQLPTPV  302 (330)
T ss_dssp             HHHHCCTTCCCCH-----HHHHHHHHHHHHHTTCCCSCCCTTT---TSCCCCCC
T ss_pred             HHHhCCCCCCCCH-----HHHHHHHHHHHHHcCCCCCCCccCC---CCCcCCCC
Confidence            9999999999954     55443          3455678898   34556665

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.70  E-value=7.6e-17  Score=125.45  Aligned_cols=131  Identities=15%  Similarity=0.183  Sum_probs=95.4

Q ss_pred             cHHHHHHHHHHHhhc--------CCCCCceEEccCCC-----CCeeEEcccCceeEeecCcccccccCCccccccCCCcc
Q psy3184          10 DTLQVKEMVESMHQA--------EYKADNYVITEGEA-----GNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQ   76 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~--------~lkp~Nili~~~~~-----~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~   76 (185)
                      .+.|++.||.|||+.        ||||+||+++.+..     ...++|+|||.+....... .....||+.|+|   |  
T Consensus       110 i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~y~a---P--  183 (271)
T 3dtc_A          110 WAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTT-KMSAAGAYAWMA---P--  183 (271)
T ss_dssp             HHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC--------------CCGGGSC---H--
T ss_pred             HHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCccccccccc-ccCCCCccceeC---H--
Confidence            468999999999985        68999999986311     2249999999997654432 235689999999   9  


Q ss_pred             cccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCccc
Q psy3184          77 TYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        77 ~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                        |++.+..++.              ++|..||. +.+.......+. ........|..+++++.++|.+||..||.+||
T Consensus       184 --E~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  259 (271)
T 3dtc_A          184 --EVIRASMFSKGSDVWSYGVLLWELLTGEVPFR-GIDGLAVAYGVA-MNKLALPIPSTCPEPFAKLMEDCWNPDPHSRP  259 (271)
T ss_dssp             --HHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTT-TSCHHHHHHHHH-TSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             --HHhccCCCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHhhh-cCCCCCCCCcccCHHHHHHHHHHhcCCcccCc
Confidence              8887666554              89999999 777776666665 33345667788999999999999999999999


Q ss_pred             CCCCCChhhhhcC
Q psy3184         143 GYQRGGIVDIKKH  155 (185)
Q Consensus       143 ~~~~~~~~~ll~h  155 (185)
                           ++.+++++
T Consensus       260 -----s~~e~l~~  267 (271)
T 3dtc_A          260 -----SFTNILDQ  267 (271)
T ss_dssp             -----CHHHHHHH
T ss_pred             -----CHHHHHHH
Confidence                 55888754

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.70  E-value=7.4e-17  Score=132.23  Aligned_cols=128  Identities=13%  Similarity=0.158  Sum_probs=103.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||+.     ||||+||+++.+.   .++|+|||.++.....   .......||+.|+|   |    |++
T Consensus       196 i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~---~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~a---P----E~~  265 (382)
T 3tt0_A          196 CAYQVARGMEYLASKKCIHRDLAARNVLVTEDN---VMKIADFGLARDIHHIDYYKKTTNGRLPVKWMA---P----EAL  265 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC---CEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCEecCCCCcceEEEcCCC---cEEEcccCcccccccccccccccCCCCCcceeC---H----HHh
Confidence            478999999999998     8999999998753   4999999999866442   23344567889999   9    888


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..++.              ++ |..||. +.+..++...+.. + .....|..+++++.+||.+||..||.+||    
T Consensus       266 ~~~~~~~~~DiwslG~il~ellt~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~li~~~l~~dP~~Rp----  338 (382)
T 3tt0_A          266 FDRIYTHQSDVWSFGVLLWEIFTLGGSPYP-GVPVEELFKLLKE-G-HRMDKPSNCTNELYMMMRDCWHAVPSQRP----  338 (382)
T ss_dssp             HSCCCCHHHHHHHHHHHHHHHHTTSCCSST-TCCHHHHHHHHHT-T-CCCCCCSSCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             cCCCCCchhHHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHHc-C-CCCCCCccCCHHHHHHHHHHcCCChhhCc----
Confidence            7766654              66 999999 8888888887772 2 35677788999999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.+++++
T Consensus       339 -s~~ell~~  346 (382)
T 3tt0_A          339 -TFKQLVED  346 (382)
T ss_dssp             -CHHHHHHH
T ss_pred             -CHHHHHHH
Confidence             55777754

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.70  E-value=2.7e-17  Score=133.81  Aligned_cols=155  Identities=15%  Similarity=0.106  Sum_probs=98.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--------ccccccCCccccccCCCcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--------ILRLLSGRPPFCVMNDPMQ   76 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--------~~~~~~gt~~y~a~~~P~~   76 (185)
                      .+.||+.||+|||++     ||||+||+++.+..+ .++|+|||+++.+....        .....+||+.|+|   |  
T Consensus       157 i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~~-~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~a---P--  230 (364)
T 3op5_A          157 LSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPD-QVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTS---I--  230 (364)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEEESSCTT-CEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCC---H--
T ss_pred             HHHHHHHHHHHHHHCCeEEecCCHHHEEEecCCCC-eEEEEECCcceecccCCcccccccCcccccCCCCCccC---H--
Confidence            478999999999987     899999999843233 49999999998765432        1234569999999   9  


Q ss_pred             cccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCC--------CccCCCCCCCHHHHHHHHHHh
Q psy3184          77 TYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI--------DKIPFPKHVTRTAQSLIKALC  134 (185)
Q Consensus        77 ~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~--------~~~~~p~~~s~~~~~li~~~l  134 (185)
                        |++.+..|+.              ++|..||. +...............        ...-.+..++.++.+|+..|+
T Consensus       231 --E~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl  307 (364)
T 3op5_A          231 --DAHNGVAPSRRGDLEILGYCMIQWLTGHLPWE-DNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVK  307 (364)
T ss_dssp             --HHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTG-GGTTCHHHHHHHHHHHHHCHHHHHHHHSCTTCCCHHHHHHHHHHH
T ss_pred             --HHhCCCCCCchhhHHHHHHHHHHHHhCCCCcc-ccccCHHHHHHHHHHhhhhHHHHHHHhcccccCHHHHHHHHHHHh
Confidence              8887766654              89999998 4322221111110000        001112467999999999999


Q ss_pred             hcCcCcccCCCCCChhhhh----------cCCCCCCCChhhhhcccCCCCccCC
Q psy3184         135 KESPAERLGYQRGGIVDIK----------KHKWFQGFDWDGLRNQTLTPPIIPV  178 (185)
Q Consensus       135 ~~dp~~R~~~~~~~~~~ll----------~hp~f~~~~~~~~~~~~~~~p~~p~  178 (185)
                      ..||.+||++     .+|+          ..++....+|....+..+.+|..+.
T Consensus       308 ~~~p~~RP~~-----~~l~~~l~~~~~~~~~~~~~~~dw~~~~~~~~~~~~~~~  356 (364)
T 3op5_A          308 LLDYTEKPLY-----ENLRDILLQGLKAIGSKDDGKLDLSVVENGGLKAKTITK  356 (364)
T ss_dssp             TCCTTCCCCH-----HHHHHHHHHHHHHTTCCCCCCCCC---------------
T ss_pred             cCCCCCCCCH-----HHHHHHHHHHHHHcCCCcCCccceEeccCCccchhhhhh
Confidence            9999999954     5443          2456678899988887776665443

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.70  E-value=2.9e-17  Score=131.26  Aligned_cols=129  Identities=12%  Similarity=0.078  Sum_probs=86.4

Q ss_pred             cHHHHHHHHHHHhh-------------cCCCCCceEEccCCCCCeeEEcccCceeEeecCcc-----cccccCCcccccc
Q psy3184          10 DTLQVKEMVESMHQ-------------AEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI-----LRLLSGRPPFCVM   71 (185)
Q Consensus        10 ~~~qi~~~l~~lH~-------------~~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~-----~~~~~gt~~y~a~   71 (185)
                      .+.|++.||.|||+             +||||+|||++.+.   ++||+|||+++.......     ....+||+.||| 
T Consensus       105 i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~---~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymA-  180 (303)
T 3hmm_A          105 LALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNG---TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA-  180 (303)
T ss_dssp             HHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTS---CEEECCCTTCEEEETTTTEESCC-----CCGGGCC-
T ss_pred             HHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCC---CEEEEeCCCCccccCCCCceeeecccccccccccC-
Confidence            46799999999995             28999999999863   499999999987765422     234689999999 


Q ss_pred             CCCcccccchhcc------Ccce--------------eccCCCCCC---------CC-----ChHHHHHHHHhcCCCccC
Q psy3184          72 NDPMQTYNMIINV------GIDN--------------IFSRPPFCV---------MN-----DPMQTYNMIINVGIDKIP  117 (185)
Q Consensus        72 ~~P~~~~E~~~~~------~~~~--------------l~g~~Pf~~---------~~-----~~~~~~~~i~~~~~~~~~  117 (185)
                        |    |++.+.      .|+.              ++|.+||..         ..     ....+...+. .....+.
T Consensus       181 --P----E~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~rp~  253 (303)
T 3hmm_A          181 --P----EVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVC-EQKLRPN  253 (303)
T ss_dssp             --H----HHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHT-TSCCCCC
T ss_pred             --H----HHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHh-cccCCCC
Confidence              9    776542      1222              677655431         11     1233444444 2223455


Q ss_pred             CCCC-----CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhc
Q psy3184         118 FPKH-----VTRTAQSLIKALCKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       118 ~p~~-----~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      +|..     .+..+.+|+.+||..||.+||     ++.++++
T Consensus       254 ~p~~~~~~~~~~~l~~li~~cl~~dP~~RP-----t~~ei~~  290 (303)
T 3hmm_A          254 IPNRWQSCEALRVMAKIMRECWYANGAARL-----TALRIKK  290 (303)
T ss_dssp             CCGGGGSSHHHHHHHHHHHTTCCSSGGGSC-----CHHHHHH
T ss_pred             CCccccchHHHHHHHHHHHHHcccCHhHCc-----CHHHHHH
Confidence            5543     235788999999999999999     4477764

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.69  E-value=2.8e-17  Score=132.91  Aligned_cols=128  Identities=13%  Similarity=0.073  Sum_probs=98.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.++.+....   ......||+.|+|   |    |++
T Consensus       198 ~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~a---P----E~~  267 (359)
T 3vhe_A          198 YSFQVAKGMEFLASRKCIHRDLAARNILLSEKN---VVKICDFGLARDIYKDPDYVRKGDARLPLKWMA---P----ETI  267 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG---CEEECCCGGGSCTTSCTTCEEC--CEECGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHCCcccCCCChhhEEEcCCC---cEEEEeccceeeecccccchhccccCCCceeEC---h----hhh
Confidence            467999999999998     8899999998753   49999999997653321   2334678899999   9    888


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChH-HHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPM-QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~-~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      .+..|+.              ++ |..||. +.+.. .....+. . ......|..+++++.++|.+||..||.+||   
T Consensus       268 ~~~~~~~~~Di~slG~il~ellt~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp---  341 (359)
T 3vhe_A          268 FDRVYTIQSDVWSFGVLLWEIFSLGASPYP-GVKIDEEFCRRLK-E-GTRMRAPDYTTPEMYQTMLDCWHGEPSQRP---  341 (359)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHTTTSCCSST-TCCCSHHHHHHHH-H-TCCCCCCTTCCHHHHHHHHHHTCSSGGGSC---
T ss_pred             cCCCCCchhhhhhHHHHHHHHHhcCCCCCC-ccchhHHHHHHHH-c-CCCCCCCCCCCHHHHHHHHHHccCChhhCC---
Confidence            7766664              66 999998 65544 4444444 2 246677788999999999999999999999   


Q ss_pred             CCChhhhhcC
Q psy3184         146 RGGIVDIKKH  155 (185)
Q Consensus       146 ~~~~~~ll~h  155 (185)
                        ++.++++|
T Consensus       342 --s~~ell~~  349 (359)
T 3vhe_A          342 --TFSELVEH  349 (359)
T ss_dssp             --CHHHHHHH
T ss_pred             --CHHHHHHH
Confidence              55888765

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.69  E-value=1.5e-16  Score=125.24  Aligned_cols=144  Identities=17%  Similarity=0.174  Sum_probs=102.7

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCC--CCeeEEcccCceeEeecCc--------ccccccCCccccccCC
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEA--GNDLFVSAEGEFQVIKDGK--------ILRLLSGRPPFCVMND   73 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~--~~~i~l~d~g~~~~~~~~~--------~~~~~~gt~~y~a~~~   73 (185)
                      ..+.||+.||+|||++     ||||+||+++.+..  ...++|+|||.++......        ......||+.|+|   
T Consensus       110 ~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a---  186 (298)
T 1csn_A          110 MAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMS---  186 (298)
T ss_dssp             HHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCC---
T ss_pred             HHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCC---
Confidence            3478999999999998     89999999987531  2239999999998775432        2345689999999   


Q ss_pred             CcccccchhccCcce--------------eccCCCCCCCC---ChHHHHHHHHhcC--CCccCCCCCCCHHHHHHHHHHh
Q psy3184          74 PMQTYNMIINVGIDN--------------IFSRPPFCVMN---DPMQTYNMIINVG--IDKIPFPKHVTRTAQSLIKALC  134 (185)
Q Consensus        74 P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~---~~~~~~~~i~~~~--~~~~~~p~~~s~~~~~li~~~l  134 (185)
                      |    |++.+..++.              ++|..||. +.   +....+..+....  .........+++++.+||.+||
T Consensus       187 P----E~~~~~~~~~~~Di~slG~il~el~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  261 (298)
T 1csn_A          187 I----NTHLGREQSRRDDLEALGHVFMYFLRGSLPWQ-GLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYAR  261 (298)
T ss_dssp             H----HHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTS-SCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHH
T ss_pred             c----hhhcCCCCChHHHHHHHHHHHHHHHcCCCCcc-hhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHh
Confidence            9    8887766654              89999998 53   3444444443110  0111223468999999999999


Q ss_pred             hcCcCcccCCCCCChhhhh----------cCCCCCCCChhh
Q psy3184         135 KESPAERLGYQRGGIVDIK----------KHKWFQGFDWDG  165 (185)
Q Consensus       135 ~~dp~~R~~~~~~~~~~ll----------~hp~f~~~~~~~  165 (185)
                      ..||.+||++     .+++          ........+|..
T Consensus       262 ~~dp~~RP~~-----~~l~~~l~~~~~~~~~~~~~~~dw~~  297 (298)
T 1csn_A          262 NLAFDATPDY-----DYLQGLFSKVLERLNTTEDENFDWNL  297 (298)
T ss_dssp             HCCTTCCCCH-----HHHHHHHHHHHHHTTCCSCSCCGGGC
T ss_pred             cCCcccCCCH-----HHHHHHHHHHHHhcCCCCCCccccCC
Confidence            9999999954     5543          234456667753

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.68  E-value=1.2e-16  Score=126.75  Aligned_cols=128  Identities=15%  Similarity=0.203  Sum_probs=102.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.+.......   ......+++.|+|   |    |++
T Consensus       155 i~~qi~~~l~~lH~~~ivH~dikp~NIli~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  224 (314)
T 2ivs_A          155 FAWQISQGMQYLAEMKLVHRDLAARNILVAEGR---KMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMA---I----ESL  224 (314)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEEETTT---EEEECCCTTCEECTTTSCEECSSCCCSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHCCCcccccchheEEEcCCC---CEEEccccccccccccccceeccCCCCcccccC---h----hhh
Confidence            367999999999998     8999999998753   49999999998664432   2234567889999   9    887


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..++.              ++ |..||. +.+...+...+. .+ .....|..+++++.++|.+||..||.+||    
T Consensus       225 ~~~~~~~~~Di~slG~il~el~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~dp~~Rp----  297 (314)
T 2ivs_A          225 FDHIYTTQSDVWSFGVLLWEIVTLGGNPYP-GIPPERLFNLLK-TG-HRMERPDNCSEEMYRLMLQCWKQEPDKRP----  297 (314)
T ss_dssp             HHCEECHHHHHHHHHHHHHHHHTTSCCSST-TCCGGGHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             cCCCcCchhhHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHhh-cC-CcCCCCccCCHHHHHHHHHHccCChhhCc----
Confidence            7655554              66 999999 888888877776 22 35667788999999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.+++++
T Consensus       298 -s~~~l~~~  305 (314)
T 2ivs_A          298 -VFADISKD  305 (314)
T ss_dssp             -CHHHHHHH
T ss_pred             -CHHHHHHH
Confidence             55887754

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.68  E-value=5.3e-17  Score=127.74  Aligned_cols=124  Identities=17%  Similarity=0.214  Sum_probs=91.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--------cccccCCccccccCCCcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--------LRLLSGRPPFCVMNDPMQ   76 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--------~~~~~gt~~y~a~~~P~~   76 (185)
                      .+.||+.||+|||++     ||||+||++..+.....++|+|||.+........        .....||+.|+|   |  
T Consensus       110 i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a---P--  184 (296)
T 3uzp_A          110 LADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYAS---I--  184 (296)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCC---H--
T ss_pred             HHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCC---h--
Confidence            478999999999998     8999999995221222499999999987655322        345689999999   9  


Q ss_pred             cccchhccCcce--------------eccCCCCCCCC---ChHHHHHHHHhcCCCccCC-----CCCCCHHHHHHHHHHh
Q psy3184          77 TYNMIINVGIDN--------------IFSRPPFCVMN---DPMQTYNMIINVGIDKIPF-----PKHVTRTAQSLIKALC  134 (185)
Q Consensus        77 ~~E~~~~~~~~~--------------l~g~~Pf~~~~---~~~~~~~~i~~~~~~~~~~-----p~~~s~~~~~li~~~l  134 (185)
                        |++.+..++.              ++|..||. +.   +..+.+..+. .  .....     +..+++++.+||.+||
T Consensus       185 --E~~~~~~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~li~~~l  258 (296)
T 3uzp_A          185 --NTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQ-GLKAATKRQKYERIS-E--KKMSTPIEVLCKGYPSEFATYLNFCR  258 (296)
T ss_dssp             --HHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTS-SCCCSSSSSHHHHHH-H--HHHHSCHHHHTTTSCHHHHHHHHHHH
T ss_pred             --hhhcCCCCCcchhhHHHHHHHHHHHhCCCCCC-CcCchhhhhhhhhhc-c--cccCCchHHHHhhCCHHHHHHHHHHH
Confidence              8887766654              89999998 43   2233333333 1  12222     3678999999999999


Q ss_pred             hcCcCcccCC
Q psy3184         135 KESPAERLGY  144 (185)
Q Consensus       135 ~~dp~~R~~~  144 (185)
                      ..||.+||++
T Consensus       259 ~~dp~~Rps~  268 (296)
T 3uzp_A          259 SLRFDDKPDY  268 (296)
T ss_dssp             TSCTTCCCCH
T ss_pred             hcCcCcCCCH
Confidence            9999999944

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.68  E-value=8.9e-17  Score=126.03  Aligned_cols=127  Identities=16%  Similarity=0.204  Sum_probs=91.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++......  ......+++.|+|   |    |++.
T Consensus       121 ~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  190 (281)
T 1mp8_A          121 YAYQLSTALAYLESKRFVHRDIAARNVLVSSND---CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMA---P----ESIN  190 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETT---EEEECC-------------------CCGGGCC---H----HHHH
T ss_pred             HHHHHHHHHHHHHhCCeecccccHHHEEECCCC---CEEECccccccccCcccccccccCCCcccccC---h----hhcc
Confidence            367999999999998     8999999999753   49999999998664432  2233467789999   9    8887


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...|+.              ++ |..||. +.+..+....+.. + ....+|..+++++.++|.+||..||.+||     
T Consensus       191 ~~~~~~~~Di~slG~~l~ell~~g~~pf~-~~~~~~~~~~i~~-~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-----  262 (281)
T 1mp8_A          191 FRRFTSASDVWMFGVCMWEILMHGVKPFQ-GVKNNDVIGRIEN-G-ERLPMPPNCPPTLYSLMTKCWAYDPSRRP-----  262 (281)
T ss_dssp             HCCCSHHHHHHHHHHHHHHHHTTSCCTTT-TCCGGGHHHHHHT-T-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             cCCCCCccCchHHHHHHHHHHhcCCCCCC-cCCHHHHHHHHHc-C-CCCCCCCCCCHHHHHHHHHHccCChhhCc-----
Confidence            666554              54 999999 7777777777772 2 35667788999999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++.++++
T Consensus       263 s~~~l~~  269 (281)
T 1mp8_A          263 RFTELKA  269 (281)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            5577765

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.68  E-value=6.7e-17  Score=129.44  Aligned_cols=128  Identities=13%  Similarity=0.102  Sum_probs=99.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.++............+++.|+|   |    |++...
T Consensus       147 i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  216 (327)
T 1fvr_A          147 FAADVARGMDYLSQKQFIHRDLAARNILVGENY---VAKIADFGLSRGQEVYVKKTMGRLPVRWMA---I----ESLNYS  216 (327)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECGGG---CEEECCTTCEESSCEECCC----CCTTTCC---H----HHHHHC
T ss_pred             HHHHHHHHHHHHHhCCccCCCCccceEEEcCCC---eEEEcccCcCccccccccccCCCCCccccC---h----hhhccc
Confidence            478999999999998     8999999998753   499999999874433333344567889999   9    887766


Q ss_pred             Ccce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .++.              ++ |..||. +.+..+....+.. + .....|..+++++.+||.+||..||.+||     ++
T Consensus       217 ~~~~~~Di~slG~il~ellt~g~~pf~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rp-----s~  288 (327)
T 1fvr_A          217 VYTTNSDVWSYGVLLWEIVSLGGTPYC-GMTCAELYEKLPQ-G-YRLEKPLNCDDEVYDLMRQCWREKPYERP-----SF  288 (327)
T ss_dssp             EECHHHHHHHHHHHHHHHHTTSCCTTT-TCCHHHHHHHGGG-T-CCCCCCTTBCHHHHHHHHHHTCSSGGGSC-----CH
T ss_pred             cCCchhcchHHHHHHHHHHcCCCCCCC-CCcHHHHHHHhhc-C-CCCCCCCCCCHHHHHHHHHHccCChhhCc-----CH
Confidence            5554              65 999999 8888888877762 2 35566778999999999999999999999     55


Q ss_pred             hhhhcC
Q psy3184         150 VDIKKH  155 (185)
Q Consensus       150 ~~ll~h  155 (185)
                      .+++.+
T Consensus       289 ~ell~~  294 (327)
T 1fvr_A          289 AQILVS  294 (327)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777754

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.68  E-value=9.9e-17  Score=124.89  Aligned_cols=128  Identities=15%  Similarity=0.176  Sum_probs=102.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.|++.||.|||+.     ||||+||+++.+.   .++|+|||.+.......  ......|++.|+|   |    |++.
T Consensus       111 i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  180 (269)
T 4hcu_A          111 MCLDVCEGMAYLEEACVIHRDLAARNCLVGENQ---VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWAS---P----EVFS  180 (269)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGG---CEEECCTTGGGGBCCHHHHSTTSTTCCGGGCC---H----HHHH
T ss_pred             HHHHHHHHHHHHHhCCeecCCcchheEEEcCCC---CEEeccccccccccccccccccCcccccccCC---H----HHhc
Confidence            367999999999998     8899999998753   49999999987554321  2334567788999   9    8887


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. +.+..+....+.. + .....|..++.++.+++.+||..||.+||     
T Consensus       181 ~~~~~~~~Di~slG~~l~~ll~~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----  252 (269)
T 4hcu_A          181 FSRYSSKSDVWSFGVLMWEVFSEGKIPYE-NRSNSEVVEDIST-G-FRLYKPRLASTHVYQIMNHCWRERPEDRP-----  252 (269)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TCCHHHHHHHHHT-T-CCCCCCTTSCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             CCCCCchhhhHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHHhc-C-ccCCCCCcCCHHHHHHHHHHccCCcccCc-----
Confidence            666654              56 999999 8888888888873 2 35566778899999999999999999999     


Q ss_pred             ChhhhhcC
Q psy3184         148 GIVDIKKH  155 (185)
Q Consensus       148 ~~~~ll~h  155 (185)
                      ++.++++|
T Consensus       253 s~~~ll~~  260 (269)
T 4hcu_A          253 AFSRLLRQ  260 (269)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            55888765

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.68  E-value=2.1e-16  Score=122.84  Aligned_cols=128  Identities=13%  Similarity=0.115  Sum_probs=101.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.   .++|+|||.+........  .....+|+.|+|   |    |++.
T Consensus       109 i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~---~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  178 (268)
T 3sxs_A          109 MCYDVCEGMAFLESHQFIHRDLAARNCLVDRDL---CVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSA---P----EVFH  178 (268)
T ss_dssp             HHHHHHHHHHHHHHTTEEESSCSGGGEEECTTC---CEEECCTTCEEECCTTCEEECCSCCCCGGGCC---H----HHHH
T ss_pred             HHHHHHHHHHHHHHCCeecCCcCcceEEECCCC---CEEEccCccceecchhhhhcccCCCcCcccCC---H----HHHh
Confidence            478999999999998     8999999998853   499999999987654422  223456778999   9    8887


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. ..+.......+.. + .....|..+++++.++|.+||..||.+||     
T Consensus       179 ~~~~~~~~Di~slG~il~~l~~~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-----  250 (268)
T 3sxs_A          179 YFKYSSKSDVWAFGILMWEVFSLGKMPYD-LYTNSEVVLKVSQ-G-HRLYRPHLASDTIYQIMYSCWHELPEKRP-----  250 (268)
T ss_dssp             HSEEETTHHHHHHHHHHHHHHTTTCCTTT-TSCHHHHHHHHHT-T-CCCCCCTTSCHHHHHHHHHTTCSSGGGSC-----
T ss_pred             ccCCchhhhhHHHHHHHHHHHcCCCCCcc-ccChHHHHHHHHc-C-CCCCCCCcChHHHHHHHHHHcCCChhhCc-----
Confidence            655554              66 999998 8887777777762 2 35566777899999999999999999999     


Q ss_pred             ChhhhhcC
Q psy3184         148 GIVDIKKH  155 (185)
Q Consensus       148 ~~~~ll~h  155 (185)
                      ++.+++++
T Consensus       251 s~~~ll~~  258 (268)
T 3sxs_A          251 TFQQLLSS  258 (268)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            55888765

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.68  E-value=1.6e-16  Score=127.69  Aligned_cols=127  Identities=9%  Similarity=0.085  Sum_probs=95.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.++......   ......||+.|+|   |    |++
T Consensus       122 i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~---~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~a---P----E~~  191 (327)
T 3lzb_A          122 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ---HVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMA---L----ESI  191 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETT---EEEECCTTC----------------CCCGGGSC---H----HHH
T ss_pred             HHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCC---CEEEccCcceeEccCccccccccCCCccccccC---H----HHH
Confidence            468999999999998     8899999998853   49999999998764432   2233457889999   9    888


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..|+.              ++ |..||. +.+..+....+. .+ .....|..++.++.+||.+||..||.+||    
T Consensus       192 ~~~~~~~~~Di~slG~il~ell~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rp----  264 (327)
T 3lzb_A          192 LHRIYTHQSDVWSYGVTVWELMTFGSKPYD-GIPASEISSILE-KG-ERLPQPPICTIDVYMIMRKCWMIDADSRP----  264 (327)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TCCGGGHHHHHH-TT-CCCCCCTTBCHHHHHHHHHHTCSSGGGSC----
T ss_pred             cCCCCChHHHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCccCCHHHHHHHHHHcCCChhHCc----
Confidence            7766664              67 999999 888777777766 22 35667778999999999999999999999    


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                       ++.+++.
T Consensus       265 -s~~ell~  271 (327)
T 3lzb_A          265 -KFRELII  271 (327)
T ss_dssp             -CHHHHHH
T ss_pred             -CHHHHHH
Confidence             5577765

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.68  E-value=2.1e-16  Score=124.01  Aligned_cols=128  Identities=13%  Similarity=0.214  Sum_probs=99.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.+.......    ......+|+.|+|   |    |+
T Consensus       126 ~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  195 (291)
T 1u46_A          126 YAVQVAEGMGYLESKRFIHRDLAARNLLLATRD---LVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCA---P----ES  195 (291)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCGGGEEEEETT---EEEECCCTTCEECCC-CCEEEC-----CCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHhCCcccCCCchheEEEcCCC---CEEEccccccccccccccchhhhccCCCCceeeC---c----hh
Confidence            367999999999998     8999999998753   49999999998765432    2234567889999   9    88


Q ss_pred             hhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +....++.              ++ |..||. +.+..+....+. ........+..++.++.++|.+||..||.+||   
T Consensus       196 ~~~~~~~~~~Di~slG~il~~l~~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp---  270 (291)
T 1u46_A          196 LKTRTFSHASDTWMFGVTLWEMFTYGQEPWI-GLNGSQILHKID-KEGERLPRPEDCPQDIYNVMVQCWAHKPEDRP---  270 (291)
T ss_dssp             HHHCEEEHHHHHHHHHHHHHHHHTTSCCTTT-TCCHHHHHHHHH-TSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSC---
T ss_pred             hcCCCCCchhhHHHHHHHHHHHHhCCCCCcc-cCCHHHHHHHHH-ccCCCCCCCcCcCHHHHHHHHHHccCCcccCc---
Confidence            77665553              66 999999 888888888877 33344556678999999999999999999999   


Q ss_pred             CCChhhhhc
Q psy3184         146 RGGIVDIKK  154 (185)
Q Consensus       146 ~~~~~~ll~  154 (185)
                        ++.++++
T Consensus       271 --s~~~l~~  277 (291)
T 1u46_A          271 --TFVALRD  277 (291)
T ss_dssp             --CHHHHHH
T ss_pred             --CHHHHHH
Confidence              5588775

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.68  E-value=2.3e-16  Score=126.65  Aligned_cols=127  Identities=14%  Similarity=0.102  Sum_probs=98.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||+++......    ......+|+.|+|   |    |+
T Consensus       156 i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~a---P----E~  225 (325)
T 3kul_A          156 MLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNL---VCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTA---P----EA  225 (325)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC---CEEECCCSSCEECC----CCEECC---CCGGGSC---H----HH
T ss_pred             HHHHHHHHHHHHHHCCeeCCCCCcceEEECCCC---CEEECCCCcccccccCccceeeccCCCCcccccC---H----hH
Confidence            367999999999998     8999999998753   49999999998764432    2223456788999   9    88


Q ss_pred             hhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +....|+.              ++ |..||. +.+..+....+. .+ .....|..++.++.+||.+||..||.+||   
T Consensus       226 ~~~~~~~~~~Di~slG~il~ell~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rp---  299 (325)
T 3kul_A          226 IAFRTFSSASDVWSFGVVMWEVLAYGERPYW-NMTNRDVISSVE-EG-YRLPAPMGCPHALHQLMLDCWHKDRAQRP---  299 (325)
T ss_dssp             HHHCEECHHHHHHHHHHHHHHHHTTSCCTTT-TSCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC---
T ss_pred             hcCCCCCcHHHHHHHHHHHHHHHcCCCCCcc-cCCHHHHHHHHH-cC-CCCCCCCCcCHHHHHHHHHHccCChhhCc---
Confidence            87665554              66 999999 888888888877 22 35667778999999999999999999999   


Q ss_pred             CCChhhhhc
Q psy3184         146 RGGIVDIKK  154 (185)
Q Consensus       146 ~~~~~~ll~  154 (185)
                        ++.++++
T Consensus       300 --s~~eil~  306 (325)
T 3kul_A          300 --RFSQIVS  306 (325)
T ss_dssp             --CHHHHHH
T ss_pred             --CHHHHHH
Confidence              4476654

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.68  E-value=9.1e-17  Score=129.29  Aligned_cols=130  Identities=13%  Similarity=0.074  Sum_probs=100.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||+.     ||||+||+++.+.   .++|+|||.+.......   ......||+.|+|   |    |++
T Consensus       177 i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~a---P----E~~  246 (344)
T 1rjb_A          177 FAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGK---VVKICDFGLARDIMSDSNYVVRGNARLPVKWMA---P----ESL  246 (344)
T ss_dssp             HHHHHHHHHHHHHHTTEEETTCSGGGEEEETTT---EEEECCCGGGSCGGGCTTSEEETTEEECGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCcccCCCChhhEEEcCCC---cEEeCCCccCcccccCccceeccCccCccCccC---H----HHh
Confidence            477999999999998     8999999998753   49999999997664432   2234567889999   9    888


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....|+.              ++ |..||. +.+....+..+...+ .....|..+++++.+||.+||..||.+||    
T Consensus       247 ~~~~~~~~~Di~slG~il~el~t~g~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rp----  320 (344)
T 1rjb_A          247 FEGIYTIKSDVWSYGILLWEIFSLGVNPYP-GIPVDANFYKLIQNG-FKMDQPFYATEEIYIIMQSCWAFDSRKRP----  320 (344)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHTTTSCCSST-TCCCSHHHHHHHHTT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             ccCCCChhHhHHHHHHHHHHHHcCCCCCcc-cCCcHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHcCCCchhCc----
Confidence            7666654              66 999998 665544444444222 35566778999999999999999999999    


Q ss_pred             CChhhhhcCC
Q psy3184         147 GGIVDIKKHK  156 (185)
Q Consensus       147 ~~~~~ll~hp  156 (185)
                       ++.+++.|-
T Consensus       321 -s~~~l~~~l  329 (344)
T 1rjb_A          321 -SFPNLTSFL  329 (344)
T ss_dssp             -CHHHHHHHH
T ss_pred             -CHHHHHHHH
Confidence             558888763

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.67  E-value=2.2e-16  Score=124.15  Aligned_cols=129  Identities=11%  Similarity=0.078  Sum_probs=103.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc----cccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI----LRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~----~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.   .++|+|||.+........    .....||+.|+|   |    |+
T Consensus       115 ~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  184 (287)
T 1u59_A          115 LLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRH---YAKISDFGLSKALGADDSYYTARSAGKWPLKWYA---P----EC  184 (287)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEEEETT---EEEECCCTTCEECTTCSCEECCCCSSCCCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHHCCEeeCCCchheEEEcCCC---CEEECcccceeeeccCcceeeccccccccccccC---H----HH
Confidence            478999999999998     8999999998753   499999999987644321    223456899999   9    88


Q ss_pred             hhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +....++.              ++ |..||. +.+..+....+. .+ ....+|..+++++.++|.+||..||.+||   
T Consensus       185 ~~~~~~~~~~Di~slG~il~ellt~g~~p~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp---  258 (287)
T 1u59_A          185 INFRKFSSRSDVWSYGVTMWEALSYGQKPYK-KMKGPEVMAFIE-QG-KRMECPPECPPELYALMSDCWIYKWEDRP---  258 (287)
T ss_dssp             HHHCEECHHHHHHHHHHHHHHHHTTSCCTTT-TCCTHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHTTCSSGGGSC---
T ss_pred             hccCCCCchhhHHHHHHHHHHHHcCCCCCcc-cCCHHHHHHHHh-cC-CcCCCCCCcCHHHHHHHHHHcCCChhhCc---
Confidence            87655554              66 999999 777777777776 32 35677888999999999999999999999   


Q ss_pred             CCChhhhhcCC
Q psy3184         146 RGGIVDIKKHK  156 (185)
Q Consensus       146 ~~~~~~ll~hp  156 (185)
                        ++.++++|.
T Consensus       259 --s~~~l~~~l  267 (287)
T 1u59_A          259 --DFLTVEQRM  267 (287)
T ss_dssp             --CHHHHHHHH
T ss_pred             --CHHHHHHHH
Confidence              558888764

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.67  E-value=4.8e-17  Score=130.27  Aligned_cols=134  Identities=10%  Similarity=0.108  Sum_probs=105.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     ||||+||+++.+.....++|+|||.+......   .......|++.|+|   |    |++
T Consensus       145 i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  217 (327)
T 2yfx_A          145 VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMP---P----EAF  217 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeC---H----hHh
Confidence            467999999999998     89999999986543445999999988744322   22334578999999   9    887


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. +.+..+....+.. + .....|..++.++.++|.+||..||.+||    
T Consensus       218 ~~~~~~~~~Di~slG~il~ellt~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rp----  290 (327)
T 2yfx_A          218 MEGIFTSKTDTWSFGVLLWEIFSLGYMPYP-SKSNQEVLEFVTS-G-GRMDPPKNCPGPVYRIMTQCWQHQPEDRP----  290 (327)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCSST-TCCHHHHHHHHHT-T-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             cCCCCCchhhHHHHHHHHHHHHcCCCCCCC-CcCHHHHHHHHhc-C-CCCCCCCCCCHHHHHHHHHHhcCChhhCc----
Confidence            7665554              55 999998 8887888777772 2 35566778999999999999999999999    


Q ss_pred             CChhhhhcCCCC
Q psy3184         147 GGIVDIKKHKWF  158 (185)
Q Consensus       147 ~~~~~ll~hp~f  158 (185)
                       ++.++++|.|+
T Consensus       291 -s~~~ll~~l~~  301 (327)
T 2yfx_A          291 -NFAIILERIEY  301 (327)
T ss_dssp             -CHHHHHHHHHH
T ss_pred             -CHHHHHHHHHH
Confidence             66999999875

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.67  E-value=7.8e-17  Score=129.32  Aligned_cols=128  Identities=9%  Similarity=0.074  Sum_probs=100.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   +++|+|||+++.......   .....||+.|+|   |    |++
T Consensus       122 ~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~a---P----E~~  191 (327)
T 3poz_A          122 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ---HVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMA---L----ESI  191 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETT---EEEECCTTHHHHHTTTCC-------CCCGGGSC---H----HHH
T ss_pred             HHHHHHHHHHHHhhCCeeCCCCChheEEECCCC---CEEEccCcceeEccCCcccccccCCCccccccC---h----HHh
Confidence            468999999999998     8999999998853   499999999986644322   233466889999   9    888


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..|+.              ++ |..||. +.+...+...+. .+ .....|..++.++.+++.+||..||.+||    
T Consensus       192 ~~~~~~~~~Di~slG~il~ellt~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----  264 (327)
T 3poz_A          192 LHRIYTHQSDVWSYGVTVWELMTFGSKPYD-GIPASEISSILE-KG-ERLPQPPICTIDVYMIMVKCWMIDADSRP----  264 (327)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TCCGGGHHHHHH-TT-CCCCCCTTBCHHHHHHHHHHTCSCGGGSC----
T ss_pred             ccCCCCchhhhhhhHHHHHHHHhcCCCCcc-CCCHHHHHHHHH-cC-CCCCCCccCCHHHHHHHHHHcCCChhhCC----
Confidence            7766664              67 999998 877777776666 22 35667778999999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.+++.+
T Consensus       265 -s~~ell~~  272 (327)
T 3poz_A          265 -KFRELIIE  272 (327)
T ss_dssp             -CHHHHHHH
T ss_pred             -CHHHHHHH
Confidence             55887764

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.67  E-value=1.1e-16  Score=128.62  Aligned_cols=127  Identities=13%  Similarity=0.112  Sum_probs=100.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++.....   .......||+.|+|   |    |++
T Consensus       179 i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~a---P----E~~  248 (343)
T 1luf_A          179 IARQVAAGMAYLSERKFVHRDLATRNCLVGENM---VVKIADFGLSRNIYSADYYKADGNDAIPIRWMP---P----ESI  248 (343)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG---CEEECCCSCHHHHTGGGCBC----CCBCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCcceEEECCCC---eEEEeecCCCcccccCccccccCCCcccceecC---h----hhh
Confidence            478999999999998     8999999998753   4999999998755332   22334578899999   9    887


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....|+.              ++ |..||. +.+..+....+. .+ .....|..++.++.+||.+||..||.+||    
T Consensus       249 ~~~~~~~~~Di~slG~il~el~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp----  321 (343)
T 1luf_A          249 FYNRYTTESDVWAYGVVLWEIFSYGLQPYY-GMAHEEVIYYVR-DG-NILACPENCPLELYNLMRLCWSKLPADRP----  321 (343)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTTCCTTT-TSCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             ccCCcCcccccHHHHHHHHHHHhcCCCcCC-CCChHHHHHHHh-CC-CcCCCCCCCCHHHHHHHHHHcccCcccCC----
Confidence            7666554              66 999999 888888888777 33 34567788999999999999999999999    


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                       ++.++++
T Consensus       322 -s~~~~~~  328 (343)
T 1luf_A          322 -SFCSIHR  328 (343)
T ss_dssp             -CHHHHHH
T ss_pred             -CHHHHHH
Confidence             5577764

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.67  E-value=5.2e-17  Score=129.64  Aligned_cols=134  Identities=12%  Similarity=0.152  Sum_probs=96.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccC-CCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh-
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEG-EAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII-   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~-~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~-   82 (185)
                      .+.||+.||+|||++     ||||+||++..+ .....++|+|||.++...........+||+.|+|   |    |++. 
T Consensus       117 i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~  189 (319)
T 4euu_A          117 VLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLH---P----DMYER  189 (319)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCBCCCCSCGGGCC---H----HHHHH
T ss_pred             HHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCceeecccCCCccC---H----HHhhh
Confidence            478999999999998     899999998321 1122489999999998777666667889999999   9    7765 


Q ss_pred             -------ccCcce--------------eccCCCCCCCC---ChHHHHHHHHhcCCCc-------------------c---
Q psy3184          83 -------NVGIDN--------------IFSRPPFCVMN---DPMQTYNMIINVGIDK-------------------I---  116 (185)
Q Consensus        83 -------~~~~~~--------------l~g~~Pf~~~~---~~~~~~~~i~~~~~~~-------------------~---  116 (185)
                             ...|+.              ++|..||....   +..+....+. .+...                   .   
T Consensus       190 ~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~  268 (319)
T 4euu_A          190 AVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKII-TGKPSGAISGVQKAENGPIDWSGDMPVS  268 (319)
T ss_dssp             HTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHH-HHCCTTCCEEEECSTTCCEEEESSCCTT
T ss_pred             ccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHh-cCCCcccchhhhcccCCccccCccCCcc
Confidence                   233433              89999996211   2244455554 22110                   0   


Q ss_pred             -CCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCC
Q psy3184         117 -PFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHK  156 (185)
Q Consensus       117 -~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp  156 (185)
                       .++..++..+.+||.+||..||.+||     +++++++||
T Consensus       269 ~~~~~~~~~~l~~ll~~~L~~dP~~R~-----s~~ell~h~  304 (319)
T 4euu_A          269 CSLSRGLQVLLTPVLANILEADQEKCW-----GFDQFFAET  304 (319)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCCCTTTSC-----CHHHHHHHH
T ss_pred             cccchhHHHHhHHHHHHhccCChhhhc-----cHHHhhhcc
Confidence             11223567889999999999999999     669999987

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.67  E-value=5.3e-17  Score=141.87  Aligned_cols=151  Identities=14%  Similarity=0.171  Sum_probs=106.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.....++|+|||.+.....+......+||+.|+|   |    |++.+.
T Consensus       126 I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~A---P----E~l~~~  198 (676)
T 3qa8_A          126 LLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLA---P----ELLEQK  198 (676)
T ss_dssp             HHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCCCCCCCSCCTTCS---S----CSSCCS
T ss_pred             HHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEcccccccccccccccccccCCcccCC---h----HHhccC
Confidence            478999999999998     8999999999764433489999999987766655667899999999   9    887766


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHH---------HHHh----cCC----CccC----CCCCCCHHHHHH
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYN---------MIIN----VGI----DKIP----FPKHVTRTAQSL  129 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~---------~i~~----~~~----~~~~----~p~~~s~~~~~l  129 (185)
                      .|+.              ++|..||. +......+.         .+..    .+.    ....    ++..++.++.+|
T Consensus       199 ~~s~ksDIwSLGviLyeLltG~~Pf~-~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dL  277 (676)
T 3qa8_A          199 KYTVTVDYWSFGTLAFECITGFRPFL-PNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERW  277 (676)
T ss_dssp             CCSTTHHHHHHHHHHHHHHSSCSSCC-SSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHCCCCCC-cccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHH
Confidence            6554              89999997 432211110         0000    000    0011    122367899999


Q ss_pred             HHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCc
Q psy3184         130 IKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI  175 (185)
Q Consensus       130 i~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~  175 (185)
                      |.+||..||.+||     ++.+++.||||+.  +..+.+.++..+|
T Consensus       278 I~~mL~~DP~kRP-----Ta~elL~hp~F~~--l~~iL~~kil~~f  316 (676)
T 3qa8_A          278 LQCMLMWHQRQRG-----TDPQNPNVGCFQA--LDSILSLKLLSVM  316 (676)
T ss_dssp             HHHHSCSSCC--------CCTTCCCCTTHHH--HHHHHCCCEEECC
T ss_pred             HHHHccCCHhhCc-----CHHHHhcCHHHHH--HHHHHhccccccc
Confidence            9999999999999     5599999999975  5777777665555

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.66  E-value=2.4e-16  Score=125.23  Aligned_cols=128  Identities=11%  Similarity=0.167  Sum_probs=96.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.+.......   ......+++.|+|   |    |++
T Consensus       152 i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  221 (313)
T 3brb_A          152 FMVDIALGMEYLSNRNFLHRDLAARNCMLRDDM---TVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIA---I----ESL  221 (313)
T ss_dssp             HHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTS---CEEECSCSCC----------------CCGGGSC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCcceEEEcCCC---cEEEeecCcceecccccccCcccccCCCccccC---c----hhh
Confidence            368999999999998     8899999998853   49999999998664432   2234567889999   9    888


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..|+.              ++ |..||. +.+.......+.. + .....|..+++++.++|.+||..||.+||    
T Consensus       222 ~~~~~~~~~Di~slG~il~el~~~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rp----  294 (313)
T 3brb_A          222 ADRVYTSKSDVWAFGVTMWEIATRGMTPYP-GVQNHEMYDYLLH-G-HRLKQPEDCLDELYEIMYSCWRTDPLDRP----  294 (313)
T ss_dssp             HSSCCCHHHHHHHHHHHHHHHHTTSCCSST-TCCGGGHHHHHHT-T-CCCCCBTTCCHHHHHHHHHTTCSSGGGSC----
T ss_pred             cCCCccchhhhHHHHHHHHHHHhcCCCCCc-cCCHHHHHHHHHc-C-CCCCCCccccHHHHHHHHHHcCCChhhCc----
Confidence            7766554              66 899998 8777777777772 2 35667788999999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.+++.+
T Consensus       295 -s~~~l~~~  302 (313)
T 3brb_A          295 -TFSVLRLQ  302 (313)
T ss_dssp             -CHHHHHHH
T ss_pred             -CHHHHHHH
Confidence             55877753

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.66  E-value=2.3e-16  Score=123.54  Aligned_cols=128  Identities=14%  Similarity=0.115  Sum_probs=101.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.+.......  ......+|+.|+|   |    |++.
T Consensus       125 i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  194 (283)
T 3gen_A          125 MCKDVCEAMEYLESKQFLHRDLAARNCLVNDQG---VVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSP---P----EVLM  194 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTS---CEEECSTTGGGGBCCHHHHSTTSTTSCGGGCC---H----HHHH
T ss_pred             HHHHHHHHHHHHHHCCccCCCCccceEEEcCCC---CEEEccccccccccccccccccCCccCcccCC---H----HHhc
Confidence            478999999999998     7899999998753   49999999987554321  2233456788999   9    8887


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. ..+.......+.. + .....|..+++++.++|.+||..||.+||     
T Consensus       195 ~~~~~~~~Dv~slG~~l~~l~t~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-----  266 (283)
T 3gen_A          195 YSKFSSKSDIWAFGVLMWEIYSLGKMPYE-RFTNSETAEHIAQ-G-LRLYRPHLASEKVYTIMYSCWHEKADERP-----  266 (283)
T ss_dssp             HCCCSHHHHHHHHHHHHHHHHTTTCCTTT-TSCHHHHHHHHHT-T-CCCCCCTTCCHHHHHHHHHTTCSSGGGSC-----
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCcc-ccChhHHHHHHhc-c-cCCCCCCcCCHHHHHHHHHHccCChhHCc-----
Confidence            666654              56 999999 8888888887772 2 35566778899999999999999999999     


Q ss_pred             ChhhhhcC
Q psy3184         148 GIVDIKKH  155 (185)
Q Consensus       148 ~~~~ll~h  155 (185)
                      ++.++++|
T Consensus       267 s~~~ll~~  274 (283)
T 3gen_A          267 TFKILLSN  274 (283)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            55888765

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.66  E-value=2.7e-16  Score=123.16  Aligned_cols=128  Identities=14%  Similarity=0.201  Sum_probs=98.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.+.......  ......+++.|+|   |    |++.
T Consensus       118 ~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  187 (281)
T 3cc6_A          118 YSLQICKAMAYLESINCVHRDIAVRNILVASPE---CVKLGDFGLSRYIEDEDYYKASVTRLPIKWMS---P----ESIN  187 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETT---EEEECCCCGGGCC---------CCCCCGGGCC---H----HHHH
T ss_pred             HHHHHHHHHHHHHHCCcccCCCccceEEECCCC---cEEeCccCCCcccccccccccccCCCCcceeC---c----hhhc
Confidence            367999999999998     8899999998853   49999999987654332  2234567889999   9    8887


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. ..+..+....+.. + .....|..+++++.++|.+||..||.+||     
T Consensus       188 ~~~~~~~~Di~slG~il~~llt~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-----  259 (281)
T 3cc6_A          188 FRRFTTASDVWMFAVCMWEILSFGKQPFF-WLENKDVIGVLEK-G-DRLPKPDLCPPVLYTLMTRCWDYDPSDRP-----  259 (281)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTTCCTTT-TSCGGGHHHHHHH-T-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             cCCCCchhccHHHHHHHHHHHhCCCCCcc-cCChHHHHHHHhc-C-CCCCCCCCCCHHHHHHHHHHccCCchhCc-----
Confidence            665554              65 999998 7666666666662 2 35667778999999999999999999999     


Q ss_pred             ChhhhhcC
Q psy3184         148 GIVDIKKH  155 (185)
Q Consensus       148 ~~~~ll~h  155 (185)
                      ++.+++.+
T Consensus       260 s~~ell~~  267 (281)
T 3cc6_A          260 RFTELVCS  267 (281)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            55887754

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.66  E-value=2.5e-16  Score=127.25  Aligned_cols=130  Identities=12%  Similarity=0.122  Sum_probs=94.5

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--------ccccccCCccccccCCCc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--------ILRLLSGRPPFCVMNDPM   75 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--------~~~~~~gt~~y~a~~~P~   75 (185)
                      ..+.||+.||+|||+.     ||||+||+++.+..+ .++|+|||+++.+....        ......||+.|+|   | 
T Consensus       155 ~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~-~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~a---P-  229 (345)
T 2v62_A          155 QLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPD-QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTS---L-  229 (345)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTT-SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCC---H-
T ss_pred             HHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCC-cEEEEeCCCceecccccccccchhccccccCCCccccC---H-
Confidence            3478999999999998     899999999876433 49999999998764321        1245689999999   9 


Q ss_pred             ccccchhccCcce--------------eccCCCCCCC-CChHHHHHHHHhcCCCccCCC---------CCCCHHHHHHHH
Q psy3184          76 QTYNMIINVGIDN--------------IFSRPPFCVM-NDPMQTYNMIINVGIDKIPFP---------KHVTRTAQSLIK  131 (185)
Q Consensus        76 ~~~E~~~~~~~~~--------------l~g~~Pf~~~-~~~~~~~~~i~~~~~~~~~~p---------~~~s~~~~~li~  131 (185)
                         |++.+..|+.              ++|..||... .+......... .  ....+|         ..++.++.++|.
T Consensus       230 ---E~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~l~~li~  303 (345)
T 2v62_A          230 ---DAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKT-N--LLDELPQSVLKWAPSGSSCCEIAQFLV  303 (345)
T ss_dssp             ---HHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHH-H--HHHTTTHHHHHHSCTTSCCHHHHHHHH
T ss_pred             ---HHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHH-h--hcccccHHHHhhccccccHHHHHHHHH
Confidence               8887766554              8999999622 23332222211 0  122233         278999999999


Q ss_pred             HHhhcCcCcccCCCCCChhhhhc
Q psy3184         132 ALCKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       132 ~~l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      +||..||.+||     +++++++
T Consensus       304 ~~l~~dp~~Rp-----s~~~l~~  321 (345)
T 2v62_A          304 CAHSLAYDEKP-----NYQALKK  321 (345)
T ss_dssp             HHHTCCTTCCC-----CHHHHHH
T ss_pred             HHhhcCcccCC-----CHHHHHH
Confidence            99999999999     4476654

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.66  E-value=3.8e-16  Score=130.80  Aligned_cols=125  Identities=15%  Similarity=0.121  Sum_probs=98.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.....  .....+++.|+|   |    |++...
T Consensus       294 ~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~---~~kl~DfG~a~~~~~~--~~~~~~~~~y~a---P----E~~~~~  361 (450)
T 1k9a_A          294 FSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDN---VAKVSDFGLTKEASST--QDTGKLPVKWTA---P----EALREK  361 (450)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCGGGEEECTTS---CEEECCCTTCEECC--------CCCTTTSC---H----HHHHSS
T ss_pred             HHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCC---CEEEeeCCCccccccc--ccCCCCCcceeC---H----HHhcCC
Confidence            478999999999997     8999999998753   4999999999855332  223467889999   9    888776


Q ss_pred             Ccce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .|+.              ++ |..||. +.+..+....+. .+ ..+..|..+++++.+||.+||..||.+||+     +
T Consensus       362 ~~~~~sDvwslG~~l~el~t~g~~P~~-~~~~~~~~~~i~-~~-~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt-----~  433 (450)
T 1k9a_A          362 KFSTKSDVWSFGILLWEIYSFGRVPYP-RIPLKDVVPRVE-KG-YKMDAPDGCPPAVYDVMKNCWHLDAATRPT-----F  433 (450)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCCSST-TSCTTTHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCC-----H
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCcCCHHHHHHHHHHcCCChhHCcC-----H
Confidence            6664              55 999999 777777777776 33 356778889999999999999999999994     4


Q ss_pred             hhhhc
Q psy3184         150 VDIKK  154 (185)
Q Consensus       150 ~~ll~  154 (185)
                      .+++.
T Consensus       434 ~~l~~  438 (450)
T 1k9a_A          434 LQLRE  438 (450)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66653

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.66  E-value=4.7e-16  Score=124.90  Aligned_cols=128  Identities=13%  Similarity=0.158  Sum_probs=101.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.+.......   ......+++.|+|   |    |++
T Consensus       162 i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  231 (334)
T 2pvf_A          162 CTYQLARGMEYLASQKCIHRDLAARNVLVTENN---VMKIADFGLARDINNIDYYKKTTNGRLPVKWMA---P----EAL  231 (334)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC---CEEECCCTTCEECTTTSSEECCSCCCCCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCeeCCCCccceEEEcCCC---CEEEccccccccccccccccccCCCCcccceeC---h----HHh
Confidence            367999999999998     8999999998753   49999999998765432   2234567889999   9    887


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..++.              ++ |..||. +.+..++...+.. + .....|..++.++.++|.+||..||.+||    
T Consensus       232 ~~~~~~~~~Di~slG~il~ellt~g~~p~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rp----  304 (334)
T 2pvf_A          232 FDRVYTHQSDVWSFGVLMWEIFTLGGSPYP-GIPVEELFKLLKE-G-HRMDKPANCTNELYMMMRDCWHAVPSQRP----  304 (334)
T ss_dssp             HHCEECHHHHHHHHHHHHHHHHTTSCCSST-TCCHHHHHHHHHH-T-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             cCCCcChHHHHHHHHHHHHHHHhCCCCCcC-cCCHHHHHHHHhc-C-CCCCCCccCCHHHHHHHHHHccCChhhCc----
Confidence            6655544              66 999999 8888888877763 2 35667788999999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.+++++
T Consensus       305 -s~~ell~~  312 (334)
T 2pvf_A          305 -TFKQLVED  312 (334)
T ss_dssp             -CHHHHHHH
T ss_pred             -CHHHHHHH
Confidence             55777754

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.65  E-value=6.8e-16  Score=121.53  Aligned_cols=127  Identities=13%  Similarity=0.122  Sum_probs=100.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc----cccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI----LRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~----~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||+|||+.     ||||+||+++.+.   .++|+|||.+........    .....|++.|+|   |    |+
T Consensus       122 i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  191 (291)
T 1xbb_A          122 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQH---YAKISDFGLSKALRADENYYKAQTHGKWPVKWYA---P----EC  191 (291)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEEEETT---EEEECCCTTCEECCTTCSEEEC----CCCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCC---cEEEccCCcceeeccCCCcccccccCCCCceeeC---h----HH
Confidence            478999999999998     8999999999853   499999999987654322    223456789999   9    88


Q ss_pred             hhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +....++.              ++ |..||. +.+..+....+. .+ ....+|..++.++.++|.+||..||.+||   
T Consensus       192 ~~~~~~~~~~Di~slG~il~~l~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rp---  265 (291)
T 1xbb_A          192 INYYKFSSKSDVWSFGVLMWEAFSYGQKPYR-GMKGSEVTAMLE-KG-ERMGCPAGCPREMYDLMNLCWTYDVENRP---  265 (291)
T ss_dssp             HHHCEEEHHHHHHHHHHHHHHHHTTTCCSST-TCCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSTTTSC---
T ss_pred             hccCCCChhhhHHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHcCCChhhCc---
Confidence            77655543              66 999999 888888777776 22 35677788999999999999999999999   


Q ss_pred             CCChhhhhc
Q psy3184         146 RGGIVDIKK  154 (185)
Q Consensus       146 ~~~~~~ll~  154 (185)
                        ++.++++
T Consensus       266 --s~~~l~~  272 (291)
T 1xbb_A          266 --GFAAVEL  272 (291)
T ss_dssp             --CHHHHHH
T ss_pred             --CHHHHHH
Confidence              5577664

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.65  E-value=3.9e-16  Score=130.82  Aligned_cols=127  Identities=17%  Similarity=0.168  Sum_probs=100.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++......  ......+++.|+|   |    |++.
T Consensus       289 ~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~---~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  358 (454)
T 1qcf_A          289 FSAQIAEGMAFIEQRNYIHRDLRAANILVSASL---VCKIADFGLARVIEDNEYTAREGAKFPIKWTA---P----EAIN  358 (454)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTC---CEEECSTTGGGGBCCHHHHTTCSSSSCGGGSC---H----HHHH
T ss_pred             HHHHHHHHHHHHHhCCccCCCCCHHHEEECCCC---cEEEeeCCCceEcCCCceeccCCCcccccccC---H----HHhc
Confidence            368999999999997     8999999998853   49999999998654321  1223456788999   9    8887


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...|+.              ++ |..||. +.+..++...+.. + .....|..+++++.+||.+||..||.+||     
T Consensus       359 ~~~~~~~~DvwslG~~l~el~t~g~~P~~-~~~~~~~~~~i~~-~-~~~~~~~~~~~~l~~li~~cl~~dp~~RP-----  430 (454)
T 1qcf_A          359 FGSFTIKSDVWSFGILLMEIVTYGRIPYP-GMSNPEVIRALER-G-YRMPRPENCPEELYNIMMRCWKNRPEERP-----  430 (454)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCSST-TCCHHHHHHHHHH-T-CCCCCCTTSCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             cCCCCcHHHHHhHHHHHHHHHhCCCCCCC-CCCHHHHHHHHHc-C-CCCCCCCCCCHHHHHHHHHHccCChhHCc-----
Confidence            666664              66 999999 8888888877773 3 35566788999999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++++++.
T Consensus       431 t~~~i~~  437 (454)
T 1qcf_A          431 TFEYIQS  437 (454)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            4477664

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.65  E-value=2.1e-16  Score=123.49  Aligned_cols=126  Identities=12%  Similarity=0.153  Sum_probs=100.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.+.............||+.|+|   |    |++.+.
T Consensus       127 i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~~  196 (284)
T 2a19_B          127 LFEQITKGVDYIHSKKLINRDLKPSNIFLVDTK---QVKIGDFGLVTSLKNDGKRTRSKGTLRYMS---P----EQISSQ  196 (284)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEEEETT---EEEECCCTTCEESSCCSCCCCCCSCCTTSC---H----HHHHCS
T ss_pred             HHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCC---CEEECcchhheeccccccccccCCcccccC---h----hhhccC
Confidence            467999999999997     8999999998853   499999999987766555566789999999   9    888766


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV  150 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~  150 (185)
                      .++.              ++|..||. .  .......+.     ...++..++.+++++|.+||..||.+||     ++.
T Consensus       197 ~~~~~~Di~slG~il~~l~~~~~~~~-~--~~~~~~~~~-----~~~~~~~~~~~~~~li~~~l~~dp~~Rp-----s~~  263 (284)
T 2a19_B          197 DYGKEVDLYALGLILAELLHVCDTAF-E--TSKFFTDLR-----DGIISDIFDKKEKTLLQKLLSKKPEDRP-----NTS  263 (284)
T ss_dssp             CCCTHHHHHHHHHHHHHHHSCCSSHH-H--HHHHHHHHH-----TTCCCTTSCHHHHHHHHHHTCSSGGGSC-----CHH
T ss_pred             CCcchhhhHHHHHHHHHHHhcCCcch-h--HHHHHHHhh-----cccccccCCHHHHHHHHHHccCChhhCc-----CHH
Confidence            5554              77877775 2  233444444     2345677899999999999999999999     669


Q ss_pred             hhhcCCCC
Q psy3184         151 DIKKHKWF  158 (185)
Q Consensus       151 ~ll~hp~f  158 (185)
                      ++++|.+.
T Consensus       264 e~l~~l~~  271 (284)
T 2a19_B          264 EILRTLTV  271 (284)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.65  E-value=1.6e-16  Score=126.01  Aligned_cols=128  Identities=13%  Similarity=0.104  Sum_probs=98.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.   .++|+|||.++......   ......||+.|+|   |    |++
T Consensus       153 ~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~a---P----E~~  222 (316)
T 2xir_A          153 YSFQVAKGMEFLASRKCIHRDLAARNILLSEKN---VVKICDFGLARDIYKDPDYVRKGDARLPLKWMA---P----ETI  222 (316)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG---CEEECCCGGGSCTTTCTTSEEETTEEECGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCcccccCccceEEECCCC---CEEECCCccccccccCccceeccCCCcceeecC---c----hhh
Confidence            367999999999998     8899999998753   49999999997653321   2234567899999   9    888


Q ss_pred             hccCcce--------------ec-cCCCCCCCCCh-HHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDP-MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~-~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      .+..++.              ++ |..||. +.+. ......+. .+ .....|..+++++.++|.+||..||.+||   
T Consensus       223 ~~~~~~~~~Di~slG~il~~l~t~g~~p~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rp---  296 (316)
T 2xir_A          223 FDRVYTIQSDVWSFGVLLWEIFSLGASPYP-GVKIDEEFCRRLK-EG-TRMRAPDYTTPEMYQTMLDCWHGEPSQRP---  296 (316)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCSST-TCCCSHHHHHHHH-HT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC---
T ss_pred             ccccccchhHHHHHHHHHHHHHhCCCCCCc-ccchhHHHHHHhc-cC-ccCCCCCCCCHHHHHHHHHHcCCChhhCc---
Confidence            7666654              65 999998 5543 44444444 22 35667788999999999999999999999   


Q ss_pred             CCChhhhhcC
Q psy3184         146 RGGIVDIKKH  155 (185)
Q Consensus       146 ~~~~~~ll~h  155 (185)
                        ++.++++|
T Consensus       297 --s~~ell~~  304 (316)
T 2xir_A          297 --TFSELVEH  304 (316)
T ss_dssp             --CHHHHHHH
T ss_pred             --CHHHHHHH
Confidence              55888875

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.65  E-value=2.5e-16  Score=124.77  Aligned_cols=129  Identities=16%  Similarity=0.145  Sum_probs=97.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.+........   .....||+.|+|   |    |++
T Consensus       150 ~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  219 (313)
T 1t46_A          150 FSYQVAKGMAFLASKNCIHRDLAARNILLTHGR---ITKICDFGLARDIKNDSNYVVKGNARLPVKWMA---P----ESI  219 (313)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEETTT---EEEECCCGGGSCTTSCTTSEECSSSEECGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHCCeecCCCccceEEEcCCC---CEEEccccccccccccccceeccCCCCcceeeC---h----HHh
Confidence            367999999999998     8899999998753   499999999876644322   224567889999   9    887


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....++.              ++ |..||. +.+.......+...+ .....|..++.++.++|.+||..||.+||    
T Consensus       220 ~~~~~~~~~Di~slG~il~ellt~g~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rp----  293 (313)
T 1t46_A          220 FNCVYTFESDVWSYGIFLWELFSLGSSPYP-GMPVDSKFYKMIKEG-FRMLSPEHAPAEMYDIMKTCWDADPLKRP----  293 (313)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTTCCSST-TCCSSHHHHHHHHHT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSC----
T ss_pred             cCCCCChHHHHHHHHHHHHHHHhCCCCCCC-cccchhHHHHHhccC-CCCCCcccCCHHHHHHHHHHcCCCchhCc----
Confidence            7665554              66 999998 655444444433122 34455678999999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.+++++
T Consensus       294 -s~~ell~~  301 (313)
T 1t46_A          294 -TFKQIVQL  301 (313)
T ss_dssp             -CHHHHHHH
T ss_pred             -CHHHHHHH
Confidence             55887753

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.65  E-value=1e-15  Score=119.60  Aligned_cols=127  Identities=14%  Similarity=0.152  Sum_probs=100.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.+........  .....+++.|+|   |    |++.
T Consensus       114 i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  183 (279)
T 1qpc_A          114 MAAQIAEGMAFIEERNYIHRDLRAANILVSDTL---SCKIADFGLARLIEDNEYTAREGAKFPIKWTA---P----EAIN  183 (279)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS---CEEECCCTTCEECSSSCEECCTTCCCCTTTSC---H----HHHH
T ss_pred             HHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCC---CEEECCCcccccccCcccccccCCCCccCccC---h----hhhc
Confidence            378999999999998     8999999998753   499999999987654322  223456789999   9    8887


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. +.+..+....+. .+ .....|..++.++.++|.+||..||.+||     
T Consensus       184 ~~~~~~~~Di~slG~il~el~~~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-----  255 (279)
T 1qpc_A          184 YGTFTIKSDVWSFGILLTEIVTHGRIPYP-GMTNPEVIQNLE-RG-YRMVRPDNCPEELYQLMRLCWKERPEDRP-----  255 (279)
T ss_dssp             HCEECHHHHHHHHHHHHHHHHTTTCCSST-TCCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             cCCCCchhhhHHHHHHHHHHHhCCCCCCc-ccCHHHHHHHHh-cc-cCCCCcccccHHHHHHHHHHhccChhhCC-----
Confidence            655553              66 899999 888788877776 22 34566778999999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++.++++
T Consensus       256 s~~~l~~  262 (279)
T 1qpc_A          256 TFDYLRS  262 (279)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            5577764

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.65  E-value=5.1e-16  Score=127.07  Aligned_cols=127  Identities=17%  Similarity=0.179  Sum_probs=98.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCccc---ccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKIL---RLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~---~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++....+...   ....+++.|+|   |    |++
T Consensus       218 ~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~---~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  287 (377)
T 3cbl_A          218 MVGDAAAGMEYLESKCCIHRDLAARNCLVTEKN---VLKISDFGMSREEADGVYAASGGLRQVPVKWTA---P----EAL  287 (377)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC---CEEECCGGGCEECTTSEEECCSSCCEEEGGGSC---H----HHH
T ss_pred             HHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCC---cEEECcCCCceecCCCceeecCCCCCCCcCcCC---H----hHh
Confidence            367999999999998     8999999998753   4999999999865433211   12235678999   9    888


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....|+.              ++ |..||. +.+..+....+. .+ .....|..+++++.+||.+||..||.+||    
T Consensus       288 ~~~~~~~~~DvwslG~il~el~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~cl~~dP~~Rp----  360 (377)
T 3cbl_A          288 NYGRYSSESDVWSFGILLWETFSLGASPYP-NLSNQQTREFVE-KG-GRLPCPELCPDAVFRLMEQCWAYEPGQRP----  360 (377)
T ss_dssp             HHCEEEHHHHHHHHHHHHHHHHTTSCCSST-TSCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHcCCCchhCc----
Confidence            7665554              55 999999 877777777766 22 45677888999999999999999999999    


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                       ++.++++
T Consensus       361 -s~~~i~~  367 (377)
T 3cbl_A          361 -SFSTIYQ  367 (377)
T ss_dssp             -CHHHHHH
T ss_pred             -CHHHHHH
Confidence             4477653

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.64  E-value=1.7e-16  Score=127.67  Aligned_cols=129  Identities=12%  Similarity=0.069  Sum_probs=89.9

Q ss_pred             cccHHHHHHHHHHHh-hc-----CCCCCceEEccCCC-----------------CCeeEEcccCceeEeecCcccccccC
Q psy3184           8 NLDTLQVKEMVESMH-QA-----EYKADNYVITEGEA-----------------GNDLFVSAEGEFQVIKDGKILRLLSG   64 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH-~~-----~lkp~Nili~~~~~-----------------~~~i~l~d~g~~~~~~~~~~~~~~~g   64 (185)
                      +..+.||+.||+||| ++     ||||+||+++.+..                 +..++|+|||+++....+    ..+|
T Consensus       164 ~~i~~qi~~aL~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~----~~~g  239 (336)
T 2vuw_A          164 KSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG----IVVF  239 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT----EEEC
T ss_pred             HHHHHHHHHHHHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC----cEEE
Confidence            345789999999999 65     89999999998631                 125999999999877543    4589


Q ss_pred             CccccccCCCcccccchhccCcce---------------eccCCCCCCCCCh-HHHHHHHHhcCCCccC----CCCCCCH
Q psy3184          65 RPPFCVMNDPMQTYNMIINVGIDN---------------IFSRPPFCVMNDP-MQTYNMIINVGIDKIP----FPKHVTR  124 (185)
Q Consensus        65 t~~y~a~~~P~~~~E~~~~~~~~~---------------l~g~~Pf~~~~~~-~~~~~~i~~~~~~~~~----~p~~~s~  124 (185)
                      |+.|||   |    |++.+.. +.               +.|..||. +... ......+.........    .+..+|+
T Consensus       240 t~~y~a---P----E~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  310 (336)
T 2vuw_A          240 CDVSMD---E----DLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYS-NVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKR  310 (336)
T ss_dssp             CCCTTC---S----GGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHH-HHHHHHHHHHHHHHTCCCSSCCCSHHHHHHHH
T ss_pred             eecccC---h----hhhcCCC-ccceehhhhhCCCCcccccccCCCc-chhhhhHHHHhhhhhhccCcccchhhhhhcCH
Confidence            999999   9    8776543 22               44777776 3211 2233333311101111    1235789


Q ss_pred             HHHHHHHHHhhcCcCcccCCCCCChhhhh-cCCCCC
Q psy3184         125 TAQSLIKALCKESPAERLGYQRGGIVDIK-KHKWFQ  159 (185)
Q Consensus       125 ~~~~li~~~l~~dp~~R~~~~~~~~~~ll-~hp~f~  159 (185)
                      ++++||++||.+|          ++++++ +||||+
T Consensus       311 ~~~dli~~~L~~d----------sa~e~l~~Hp~f~  336 (336)
T 2vuw_A          311 KIQEFHRTMLNFS----------SATDLLCQHSLFK  336 (336)
T ss_dssp             HHHHHHHHGGGSS----------SHHHHHHHCGGGC
T ss_pred             HHHHHHHHHhccC----------CHHHHHhcCCCcC
Confidence            9999999999976          569999 999995

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.64  E-value=2.8e-16  Score=124.31  Aligned_cols=124  Identities=15%  Similarity=0.207  Sum_probs=90.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.+.......  .....+||+.|+|   |    |++.
T Consensus       116 ~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  185 (294)
T 4eqm_A          116 FTNQILDGIKHAHDMRIVHRDIKPQNILIDSNK---TLKIFDFGIAKALSETSLTQTNHVLGTVQYFS---P----EQAK  185 (294)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS---CEEECCCSSSTTC-------------CCSSCC---H----HHHH
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCHHHEEECCCC---CEEEEeCCCccccccccccccCccccCccccC---H----hHhc
Confidence            367999999999997     8899999998853   49999999987554332  2345689999999   9    8887


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCc--cCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK--IPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~--~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      +..++.              ++|..||. +.+...............  ...+..++..+.++|.+||..||.+||+.
T Consensus       186 ~~~~~~~~Di~slG~~l~~ll~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~  262 (294)
T 4eqm_A          186 GEATDECTDIYSIGIVLYEMLVGEPPFN-GETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKT  262 (294)
T ss_dssp             TCCCCTTHHHHHHHHHHHHHHHSSCSSC-SSCHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSS
T ss_pred             CCCCCchHhHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcCCHhHcccc
Confidence            766554              89999999 777766655555111111  13346789999999999999999999954

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.64  E-value=4.8e-16  Score=120.52  Aligned_cols=128  Identities=15%  Similarity=0.175  Sum_probs=100.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.|++.||+|||++     ||||+||+++.+.   .++|+|||.+.......  ......|++.|+|   |    |++.
T Consensus       109 ~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  178 (267)
T 3t9t_A          109 MCLDVCEGMAYLEEACVIHRDLAARNCLVGENQ---VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWAS---P----EVFS  178 (267)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGG---CEEECCTTGGGGBCCHHHHSTTSTTCCGGGCC---H----HHHH
T ss_pred             HHHHHHHHHHHHHhCCcccCCCchheEEECCCC---CEEEcccccccccccccccccccccccccccC---h----hhhc
Confidence            367999999999998     7899999998753   49999999987553321  2234567889999   9    8887


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. +.+..+....+. .+ .....|..++.++.+++.+||..||.+||     
T Consensus       179 ~~~~~~~~Di~slG~il~~l~~~g~~p~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-----  250 (267)
T 3t9t_A          179 FSRYSSKSDVWSFGVLMWEVFSEGKIPYE-NRSNSEVVEDIS-TG-FRLYKPRLASTHVYQIMNHCWRERPEDRP-----  250 (267)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TCCHHHHHHHHH-TT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             CCCccchhchhhhHHHHHHHhccCCCCCC-CCCHHHHHHHHh-cC-CcCCCCccCcHHHHHHHHHHccCChhhCc-----
Confidence            665554              66 899999 888888888877 22 34556777899999999999999999999     


Q ss_pred             ChhhhhcC
Q psy3184         148 GIVDIKKH  155 (185)
Q Consensus       148 ~~~~ll~h  155 (185)
                      ++.+++++
T Consensus       251 s~~~ll~~  258 (267)
T 3t9t_A          251 AFSRLLRQ  258 (267)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            55887753

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.64  E-value=1.3e-15  Score=119.39  Aligned_cols=129  Identities=17%  Similarity=0.103  Sum_probs=95.2

Q ss_pred             cHHHHHHHHHHHhhc-------CCCCCceEEccCCC--CCeeEEcccCceeEeecCcccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-------EYKADNYVITEGEA--GNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-------~lkp~Nili~~~~~--~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.|++.||+|||+.       ||||+||+++.+..  ...++|+|||.++....  ......||+.|+|   |    |+
T Consensus       127 ~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~--~~~~~~g~~~y~a---P----E~  197 (287)
T 4f0f_A          127 LMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVH--SVSGLLGNFQWMA---P----ET  197 (287)
T ss_dssp             HHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSS--CEECCCCCCTTSC---G----GG
T ss_pred             HHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCccccccc--cccccCCCccccC---c----hh
Confidence            478999999999986       57999999986432  11289999999874432  3445789999999   9    87


Q ss_pred             hhc--cCcce--------------eccCCCCCCCCChHH--HHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCccc
Q psy3184          81 IIN--VGIDN--------------IFSRPPFCVMNDPMQ--TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        81 ~~~--~~~~~--------------l~g~~Pf~~~~~~~~--~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                      +..  ..|+.              ++|..||. ..+...  ....+. .......+|..+++++.+||.+||..||.+||
T Consensus       198 ~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp  275 (287)
T 4f0f_A          198 IGAEEESYTEKADTYSFAMILYTILTGEGPFD-EYSYGKIKFINMIR-EEGLRPTIPEDCPPRLRNVIELCWSGDPKKRP  275 (287)
T ss_dssp             SSCSSCEECHHHHHHHHHHHHHHHHHSSCTTT-TCCCCHHHHHHHHH-HSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSC
T ss_pred             hccCCCCcCchhhHHHHHHHHHHHHcCCCCCc-cccccHHHHHHHHh-ccCCCCCCCcccCHHHHHHHHHHhcCChhhCc
Confidence            732  22332              89999998 544332  244444 22345677788999999999999999999999


Q ss_pred             CCCCCChhhhhc
Q psy3184         143 GYQRGGIVDIKK  154 (185)
Q Consensus       143 ~~~~~~~~~ll~  154 (185)
                           ++.++++
T Consensus       276 -----s~~~ll~  282 (287)
T 4f0f_A          276 -----HFSYIVK  282 (287)
T ss_dssp             -----CHHHHHH
T ss_pred             -----CHHHHHH
Confidence                 5577764

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.64  E-value=9.3e-16  Score=119.91  Aligned_cols=125  Identities=15%  Similarity=0.119  Sum_probs=93.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.|++.||+|||++     ||||+||+++.+.   .++|+|||.+......  .....+++.|+|   |    |++...
T Consensus       122 ~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~---~~~l~Dfg~~~~~~~~--~~~~~~~~~y~a---P----E~~~~~  189 (278)
T 1byg_A          122 FSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDN---VAKVSDFGLTKEASST--QDTGKLPVKWTA---P----EALREK  189 (278)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTS---CEEECCCCC--------------CCTTTSC---H----HHHHHC
T ss_pred             HHHHHHHHHHHHHhCCccccCCCcceEEEeCCC---cEEEeecccccccccc--ccCCCccccccC---H----HHhCCC
Confidence            467999999999998     8899999998753   4999999998755432  234467889999   9    888766


Q ss_pred             Ccce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .++.              ++ |..||. ..+..+....+. .+ .....|..+++++.++|.+||..||.+||     ++
T Consensus       190 ~~~~~~Di~slG~il~~l~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp-----s~  261 (278)
T 1byg_A          190 KFSTKSDVWSFGILLWEIYSFGRVPYP-RIPLKDVVPRVE-KG-YKMDAPDGCPPAVYEVMKNCWHLDAAMRP-----SF  261 (278)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCSCT-TSCGGGHHHHHT-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC-----CH
T ss_pred             CCCchhcHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHh-cC-CCCCCcccCCHHHHHHHHHHhcCChhhCC-----CH
Confidence            5554              55 999998 777777777776 22 35667788999999999999999999999     55


Q ss_pred             hhhhc
Q psy3184         150 VDIKK  154 (185)
Q Consensus       150 ~~ll~  154 (185)
                      .++++
T Consensus       262 ~~l~~  266 (278)
T 1byg_A          262 LQLRE  266 (278)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.64  E-value=1.2e-15  Score=120.21  Aligned_cols=129  Identities=16%  Similarity=0.177  Sum_probs=86.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec---CcccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD---GKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~---~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.   .++|+|||.+.....   ........||+.|+|   |    |++
T Consensus       125 i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~a---P----E~~  194 (289)
T 3og7_A          125 IARQTARGMDYLHAKSIIHRDLKSNNIFLHEDN---TVKIGDFGLATEKSRWSGSHQFEQLSGSILWMA---P----EVI  194 (289)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTT---EEEECCCC------------------CCCTTCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCcccccCccceEEECCCC---CEEEccceeccccccccccccccccCCCccccC---c----hhh
Confidence            368999999999997     8899999998853   499999999875543   223345689999999   9    877


Q ss_pred             h---ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCcc---CCCCCCCHHHHHHHHHHhhcCcCcc
Q psy3184          82 I---NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKI---PFPKHVTRTAQSLIKALCKESPAER  141 (185)
Q Consensus        82 ~---~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~---~~p~~~s~~~~~li~~~l~~dp~~R  141 (185)
                      .   ...++.              ++|..||....+.......+. .+....   ..+..+++++.+||.+||..||.+|
T Consensus       195 ~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R  273 (289)
T 3og7_A          195 RMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVG-RGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDER  273 (289)
T ss_dssp             C----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHH-HTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             cccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhc-ccccCcchhhccccCCHHHHHHHHHHccCChhhC
Confidence            5   333432              889999983344444554444 332222   2234689999999999999999999


Q ss_pred             cCCCCCChhhhhc
Q psy3184         142 LGYQRGGIVDIKK  154 (185)
Q Consensus       142 ~~~~~~~~~~ll~  154 (185)
                      |     ++.++++
T Consensus       274 p-----s~~ell~  281 (289)
T 3og7_A          274 P-----SFPRILA  281 (289)
T ss_dssp             C-----CHHHHHH
T ss_pred             C-----CHHHHHH
Confidence            9     5577764

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.63  E-value=3.2e-16  Score=125.57  Aligned_cols=128  Identities=14%  Similarity=0.102  Sum_probs=97.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---cccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---LRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||+.     ||||+||+++.+.   .++|+|||.+........   .....||+.|+|   |    |++
T Consensus       169 ~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~  238 (333)
T 2i1m_A          169 FSSQVAQGMAFLASKNCIHRDVAARNVLLTNGH---VAKIGDFGLARDIMNDSNYIVKGNARLPVKWMA---P----ESI  238 (333)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGCEEEGGG---EEEBCCCGGGCCGGGCTTSEECSSCEECGGGSC---H----HHH
T ss_pred             HHHHHHHHHHHHhcCCcccCCcccceEEECCCC---eEEECccccccccccccceeecCCCCCCccccC---H----HHh
Confidence            357999999999998     8999999998753   499999999986543321   223457889999   9    887


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..++.              ++ |..||. +.........+...+ .....|...+.++.++|.+||..||.+||    
T Consensus       239 ~~~~~~~~~Di~slG~il~el~t~g~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp----  312 (333)
T 2i1m_A          239 FDCVYTVQSDVWSYGILLWEIFSLGLNPYP-GILVNSKFYKLVKDG-YQMAQPAFAPKNIYSIMQACWALEPTHRP----  312 (333)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHTTTSCCSST-TCCSSHHHHHHHHHT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             ccCCCChHHHHHHHHHHHHHHHcCCCCCCc-ccchhHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHhccChhhCc----
Confidence            7665554              55 899998 655554444444122 34566777899999999999999999999    


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                       ++.++++
T Consensus       313 -s~~~l~~  319 (333)
T 2i1m_A          313 -TFQQICS  319 (333)
T ss_dssp             -CHHHHHH
T ss_pred             -CHHHHHH
Confidence             5588775

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.63  E-value=6e-16  Score=126.80  Aligned_cols=127  Identities=11%  Similarity=0.099  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-----ccccccCCccccccCCCcccccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      +.||+.||+|||++     ||||+||+++.+.   .++|+|||+++......     ......+++.|+|   |    |+
T Consensus       198 ~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~---~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  267 (373)
T 3c1x_A          198 GLQVAKGMKFLASKKFVHRDLAARNCMLDEKF---TVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA---L----ES  267 (373)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC---CEEECCC---------------------CCGGGSC---H----HH
T ss_pred             HHHHHHHHHHHHHCCEecCccchheEEECCCC---CEEEeeccccccccccccccccccCCCCCcccccC---h----HH
Confidence            57999999999998     8999999998753   49999999998654321     1233567889999   9    88


Q ss_pred             hhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +....|+.              ++ |.+||. +.+..+....+. .+ .....|..++.++.+++.+||..||.+||   
T Consensus       268 ~~~~~~~~~~DvwSlG~il~ellt~~~~p~~-~~~~~~~~~~~~-~~-~~~~~p~~~~~~l~~li~~cl~~dp~~RP---  341 (373)
T 3c1x_A          268 LQTQKFTTKSDVWSFGVLLWELMTRGAPPYP-DVNTFDITVYLL-QG-RRLLQPEYCPDPLYEVMLKCWHPKAEMRP---  341 (373)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTSCCSCT-TSCSSCHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC---
T ss_pred             hcCCCCCcHHHHHHHHHHHHHHHhCcCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHcCCChhhCc---
Confidence            87666654              66 788888 666666666666 33 35566778999999999999999999999   


Q ss_pred             CCChhhhhcC
Q psy3184         146 RGGIVDIKKH  155 (185)
Q Consensus       146 ~~~~~~ll~h  155 (185)
                        ++.+++++
T Consensus       342 --s~~ell~~  349 (373)
T 3c1x_A          342 --SFSELVSR  349 (373)
T ss_dssp             --CHHHHHHH
T ss_pred             --CHHHHHHH
Confidence              55777653

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.63  E-value=8.9e-16  Score=128.62  Aligned_cols=132  Identities=14%  Similarity=0.180  Sum_probs=98.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++......  ......+++.|+|   |    |++.
T Consensus       285 i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~---~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  354 (452)
T 1fmk_A          285 MAAQIASGMAYVERMNYVHRDLRAANILVGENL---VCKVADFGLARLIEDNEYTARQGAKFPIKWTA---P----EAAL  354 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG---CEEECCCCTTC--------------CCGGGSC---H----HHHH
T ss_pred             HHHHHHHHHHHHHhCCeeCCCCChhhEEECCCC---CEEECCCccceecCCCceecccCCcccccccC---H----hHHh
Confidence            368999999999998     8999999998753   49999999998664332  1223456788999   9    8887


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...|+.              ++ |..||. +.+..+....+. .+ .....|..++.++.+||.+||..||.+||     
T Consensus       355 ~~~~~~~sDvwslG~~l~el~t~g~~P~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~l~~li~~cl~~dP~~Rp-----  426 (452)
T 1fmk_A          355 YGRFTIKSDVWSFGILLTELTTKGRVPYP-GMVNREVLDQVE-RG-YRMPCPPECPESLHDLMCQCWRKEPEERP-----  426 (452)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTTCCSST-TCCHHHHHHHHH-TT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             cCCCCccccHHhHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHccCChhhCc-----
Confidence            666654              66 899999 888888888777 33 35567788999999999999999999999     


Q ss_pred             Chhhhhc--CCCCC
Q psy3184         148 GIVDIKK--HKWFQ  159 (185)
Q Consensus       148 ~~~~ll~--hp~f~  159 (185)
                      ++++++.  ..++.
T Consensus       427 t~~~l~~~L~~~~~  440 (452)
T 1fmk_A          427 TFEYLQAFLEDYFT  440 (452)
T ss_dssp             CHHHHHHHHHTTTS
T ss_pred             CHHHHHHHHHHHhc
Confidence            5587775  35553

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.63  E-value=1.3e-15  Score=122.51  Aligned_cols=128  Identities=15%  Similarity=0.111  Sum_probs=94.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++......    ......+|+.|+|   |    |+
T Consensus       152 i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  221 (333)
T 1mqb_A          152 MLRGIAAGMKYLANMNYVHRDLAARNILVNSNL---VCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTA---P----EA  221 (333)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC---CEEECCCCC-----------------CCCGGGSC---H----HH
T ss_pred             HHHHHHHHHHHHHhCCeeCCCCChheEEECCCC---cEEECCCCcchhhccccccccccCCCCccccccC---c----hh
Confidence            368999999999997     8899999998753   49999999998664421    1223456788999   9    88


Q ss_pred             hhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +....++.              ++ |..||. +.+..++...+. .+ .....|..++.++.++|.+||..||.+||   
T Consensus       222 ~~~~~~~~~~Di~slG~il~ellt~g~~pf~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp---  295 (333)
T 1mqb_A          222 ISYRKFTSASDVWSFGIVMWEVMTYGERPYW-ELSNHEVMKAIN-DG-FRLPTPMDCPSAIYQLMMQCWQQERARRP---  295 (333)
T ss_dssp             HHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TCCHHHHHHHHH-TT-CCCCCCTTCBHHHHHHHHHHTCSSTTTSC---
T ss_pred             cccCCCCchhhhHHHHHHHHHHHcCCCCCcc-cCCHHHHHHHHH-CC-CcCCCcccCCHHHHHHHHHHcCCChhhCc---
Confidence            87666554              66 999998 888888887777 32 34556678999999999999999999999   


Q ss_pred             CCChhhhhcC
Q psy3184         146 RGGIVDIKKH  155 (185)
Q Consensus       146 ~~~~~~ll~h  155 (185)
                        ++.+++++
T Consensus       296 --s~~~l~~~  303 (333)
T 1mqb_A          296 --KFADIVSI  303 (333)
T ss_dssp             --CHHHHHHH
T ss_pred             --CHHHHHHH
Confidence              44776653

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.63  E-value=1e-15  Score=120.71  Aligned_cols=126  Identities=11%  Similarity=0.100  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-----ccccccCCccccccCCCcccccc
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      +.||+.||+|||++     ||||+||+++.+.   .++|+|||.+.......     ......||+.|+|   |    |+
T Consensus       134 ~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  203 (298)
T 3f66_A          134 GLQVAKGMKYLASKKFVHRDLAARNCMLDEKF---TVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMA---L----ES  203 (298)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCSGGGEEECTTC---CEEECSCGGGCCCSCGGGCBC-----CCBCGGGSC---H----HH
T ss_pred             HHHHHHHHHHHHhCCccCCCCchheEEECCCC---CEEECcccccccccccchhccccccCCCCCccccC---h----HH
Confidence            57999999999998     8899999998753   49999999997654322     2234567889999   9    88


Q ss_pred             hhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +.+..++.              ++ |.+||. +.+..+....+. .+ .....|..+++++.+++.+||..||.+||   
T Consensus       204 ~~~~~~~~~~Di~slG~il~~l~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp---  277 (298)
T 3f66_A          204 LQTQKFTTKSDVWSFGVLLWELMTRGAPPYP-DVNTFDITVYLL-QG-RRLLQPEYCPDPLYEVMLKCWHPKAEMRP---  277 (298)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTSCCSST-TSCTTTHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC---
T ss_pred             hcCCCCChHHHHHHHHHHHHHHHhCCCCCCc-cCCHHHHHHHHh-cC-CCCCCCccCCHHHHHHHHHHcCCChhhCc---
Confidence            87666654              66 677887 776666666666 22 35566778999999999999999999999   


Q ss_pred             CCChhhhhc
Q psy3184         146 RGGIVDIKK  154 (185)
Q Consensus       146 ~~~~~~ll~  154 (185)
                        ++.++++
T Consensus       278 --s~~ell~  284 (298)
T 3f66_A          278 --SFSELVS  284 (298)
T ss_dssp             --CHHHHHH
T ss_pred             --CHHHHHH
Confidence              5577664

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.63  E-value=6.4e-16  Score=134.75  Aligned_cols=127  Identities=13%  Similarity=0.127  Sum_probs=99.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.+....    ......||+.|+|   |    |+
T Consensus       474 i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~---~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~A---P----E~  543 (635)
T 4fl3_A          474 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQH---YAKISDFGLSKALRADENYYKAQTHGKWPVKWYA---P----EC  543 (635)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETT---EEEECCTTHHHHTTC-------------CGGGSC---H----HH
T ss_pred             HHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCC---CEEEEEcCCccccccCccccccccCCCCceeeeC---h----hh
Confidence            478999999999998     8999999999853   59999999987654322    2233457789999   9    88


Q ss_pred             hhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +....|+.              ++ |..||. +.+..++...+. .+ .....|..++.++.+||.+||..||.+||+  
T Consensus       544 ~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~-~~~~~~~~~~i~-~~-~~~~~p~~~~~~l~~li~~cl~~dP~~RPs--  618 (635)
T 4fl3_A          544 INYYKFSSKSDVWSFGVLMWEAFSYGQKPYR-GMKGSEVTAMLE-KG-ERMGCPAGCPREMYDLMNLCWTYDVENRPG--  618 (635)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTTCCSST-TCCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSTTTSCC--
T ss_pred             hcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHcCCCHhHCcC--
Confidence            87766665              65 999999 888888888887 33 466778889999999999999999999994  


Q ss_pred             CCChhhhhc
Q psy3184         146 RGGIVDIKK  154 (185)
Q Consensus       146 ~~~~~~ll~  154 (185)
                         +.+++.
T Consensus       619 ---~~~l~~  624 (635)
T 4fl3_A          619 ---FAAVEL  624 (635)
T ss_dssp             ---HHHHHH
T ss_pred             ---HHHHHH
Confidence               477653

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.62  E-value=1.1e-15  Score=129.57  Aligned_cols=134  Identities=15%  Similarity=0.171  Sum_probs=103.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc--cccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI--LRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~--~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.......  .....+++.|+|   |    |++.
T Consensus       323 i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~---~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  392 (495)
T 1opk_A          323 MATQISSAMEYLEKKNFIHRNLAARNCLVGENH---LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA---P----ESLA  392 (495)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECGGG---CEEECCTTCEECCTTCCEECCTTCCCCGGGCC---H----HHHH
T ss_pred             HHHHHHHHHHHHHhCCcccCCCChhhEEECCCC---cEEEeecccceeccCCceeecCCCcCCcceeC---H----hHHh
Confidence            367999999999998     8999999998753   499999999986643221  223456788999   9    8887


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...|+.              ++ |..||. +.+..++...+. .+ .....|..++.++.+||.+||..||.+||     
T Consensus       393 ~~~~~~~sDvwSlG~~l~el~t~g~~p~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----  464 (495)
T 1opk_A          393 YNKFSIKSDVWAFGVLLWEIATYGMSPYP-GIDLSQVYELLE-KD-YRMERPEGCPEKVYELMRACWQWNPSDRP-----  464 (495)
T ss_dssp             HCEECHHHHHHHHHHHHHHHHTTSCCSST-TCCGGGHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             cCCCCcHHhHHhHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHcCcChhHCc-----
Confidence            666654              55 999999 888777777776 22 35667788999999999999999999999     


Q ss_pred             ChhhhhcC--CCCCCC
Q psy3184         148 GIVDIKKH--KWFQGF  161 (185)
Q Consensus       148 ~~~~ll~h--p~f~~~  161 (185)
                      ++.++++.  .++...
T Consensus       465 s~~el~~~L~~~~~~~  480 (495)
T 1opk_A          465 SFAEIHQAFETMFQES  480 (495)
T ss_dssp             CHHHHHHHHHTSCSSS
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            55777652  444443

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.62  E-value=1.8e-15  Score=117.30  Aligned_cols=124  Identities=15%  Similarity=0.113  Sum_probs=95.2

Q ss_pred             cHHHHHHHHHHHhhc-------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||.|||+.       ||||+||+++.+.   .+++.++|+....    ......||+.|+|   |    |++.
T Consensus       116 i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~---~~~l~~~~~~~~~----~~~~~~~t~~y~a---P----E~~~  181 (271)
T 3kmu_A          116 FALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDM---TARISMADVKFSF----QSPGRMYAPAWVA---P----EALQ  181 (271)
T ss_dssp             HHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTS---CEEEEGGGSCCTT----SCTTCBSCGGGSC---H----HHHH
T ss_pred             HHHHHHHHHHHHhcCCCceecCCCccceEEEcCCc---ceeEEeccceeee----cccCccCCccccC---h----hhhc
Confidence            478999999999985       6899999998753   2677766655322    2234678999999   9    8877


Q ss_pred             ccCcce-----------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          83 NVGIDN-----------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        83 ~~~~~~-----------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +..++.                 ++|..||. +.+.......+. .....+.+|..+++++.++|.+||..||.+||   
T Consensus       182 ~~~~~~~~~~~Di~slG~il~el~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp---  256 (271)
T 3kmu_A          182 KKPEDTNRRSADMWSFAVLLWELVTREVPFA-DLSNMEIGMKVA-LEGLRPTIPPGISPHVSKLMKICMNEDPAKRP---  256 (271)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHHHHCSCTTT-TSCHHHHHHHHH-HSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSC---
T ss_pred             cCCCCCCCchhhHHHHHHHHHHHHhCCCCcc-ccChHHHHHHHH-hcCCCCCCCCCCCHHHHHHHHHHcCCChhhCc---
Confidence            543321                 88999999 777777766665 23346677888999999999999999999999   


Q ss_pred             CCChhhhhc
Q psy3184         146 RGGIVDIKK  154 (185)
Q Consensus       146 ~~~~~~ll~  154 (185)
                        ++.++++
T Consensus       257 --s~~~il~  263 (271)
T 3kmu_A          257 --KFDMIVP  263 (271)
T ss_dssp             --CHHHHHH
T ss_pred             --CHHHHHH
Confidence              5577764

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.62  E-value=1.3e-15  Score=119.78  Aligned_cols=127  Identities=17%  Similarity=0.214  Sum_probs=98.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-----cccccccCCccccccCCCccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-----KILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-----~~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++.....     .......|++.|+|   |    |
T Consensus       129 i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E  198 (298)
T 3pls_A          129 FGLQVARGMEYLAEQKFVHRDLAARNCMLDESF---TVKVADFGLARDILDREYYSVQQHRHARLPVKWTA---L----E  198 (298)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTC---CEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSC---H----H
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCcceEEEcCCC---cEEeCcCCCcccccCCcccccccCcCCCCCccccC---h----h
Confidence            367999999999998     8899999998753   4999999999754332     22334578899999   9    8


Q ss_pred             chhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          80 MIINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        80 ~~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ++.+..++.              ++ +.+||. ..+.......+.. + .....|..+++++.+++.+||..||.+||  
T Consensus       199 ~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rp--  273 (298)
T 3pls_A          199 SLQTYRFTTKSDVWSFGVLLWELLTRGAPPYR-HIDPFDLTHFLAQ-G-RRLPQPEYCPDSLYQVMQQCWEADPAVRP--  273 (298)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTT-TSCGGGHHHHHHT-T-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC--
T ss_pred             hhccCCCChhhchhhHHHHHHHHhhCCCCCCc-cCCHHHHHHHhhc-C-CCCCCCccchHHHHHHHHHHccCChhhCc--
Confidence            887666554              67 556666 7777777777762 2 35666778999999999999999999999  


Q ss_pred             CCCChhhhhc
Q psy3184         145 QRGGIVDIKK  154 (185)
Q Consensus       145 ~~~~~~~ll~  154 (185)
                         ++.++++
T Consensus       274 ---s~~~ll~  280 (298)
T 3pls_A          274 ---TFRVLVG  280 (298)
T ss_dssp             ---CHHHHHH
T ss_pred             ---CHHHHHH
Confidence               5577664

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.62  E-value=7.5e-16  Score=120.79  Aligned_cols=127  Identities=14%  Similarity=0.169  Sum_probs=100.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.+.......  ......+++.|+|   |    |++.
T Consensus       116 i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~---~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  185 (288)
T 3kfa_A          116 MATQISSAMEYLEKKNFIHRDLAARNCLVGENH---LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA---P----ESLA  185 (288)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGG---CEEECCCCGGGTSCSSSSEEETTEEECGGGCC---H----HHHH
T ss_pred             HHHHHHHHHHHHHHCCccCCCCCcceEEEcCCC---CEEEccCccceeccCCccccccCCccccCcCC---h----hhhc
Confidence            357999999999987     8899999998753   49999999987654332  2233456888999   9    8887


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...++.              ++ |..||. +.+.......+..  ......|..+++++.+||.+||..||.+||     
T Consensus       186 ~~~~~~~~Di~slG~il~~ll~~g~~p~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp-----  257 (288)
T 3kfa_A          186 YNKFSIKSDVWAFGVLLWEIATYGMSPYP-GIDLSQVYELLEK--DYRMERPEGCPEKVYELMRACWQWNPSDRP-----  257 (288)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCSST-TCCGGGHHHHHHT--TCCCCCCTTCCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHhc--cCCCCCCCCCCHHHHHHHHHHhCCChhhCc-----
Confidence            666654              66 999998 8887777777762  235667788999999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++.++++
T Consensus       258 s~~~~~~  264 (288)
T 3kfa_A          258 SFAEIHQ  264 (288)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            5577764

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.62  E-value=1.3e-15  Score=121.23  Aligned_cols=123  Identities=13%  Similarity=0.129  Sum_probs=84.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--cccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||+.     ||+|+||+++.+.   .++|+|||.+......  .......|++.|+|   |    |++.
T Consensus       139 i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  208 (309)
T 2h34_A          139 IVRQIGSALDAAHAAGATHRDVKPENILVSADD---FAYLVDFGIASATTDEKLTQLGNTVGTLYYMA---P----ERFS  208 (309)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTS---CEEECSCCC----------------CCGGGCC---G----GGTC
T ss_pred             HHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCC---CEEEecCccCccccccccccccccCCCcCccC---H----HHHc
Confidence            478999999999998     8899999998753   4999999998766443  22335679999999   9    8776


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                      +..++.              ++|..||. +.+.......+..........+..++.++.++|.+||..||.+||+
T Consensus       209 ~~~~~~~~Di~slG~il~~l~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~  282 (309)
T 2h34_A          209 ESHATYRADIYALTCVLYECLTGSPPYQ-GDQLSVMGAHINQAIPRPSTVRPGIPVAFDAVIARGMAKNPEDRYV  282 (309)
T ss_dssp             C----CCCHHHHHHHHHHHHHHSSCSSC-SCHHHHHHHHHHSCCCCGGGTSTTCCTHHHHHHHHHTCSSGGGSCS
T ss_pred             CCCCCchHhHHHHHHHHHHHHHCCCCCC-CchHHHHHHHhccCCCCccccCCCCCHHHHHHHHHhccCCHHHHHH
Confidence            655543              88999998 7666555555541111223455678999999999999999999994

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.62  E-value=1.9e-15  Score=120.26  Aligned_cols=132  Identities=21%  Similarity=0.344  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhh---c-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184          11 TLQVKEMVESMHQ---A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        11 ~~qi~~~l~~lH~---~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +.|++.||.|||+   +     ||||+||+++.+  +..++|+|||.+.....  ......||+.|+|   |    |++.
T Consensus       108 ~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~--~~~~kl~Dfg~~~~~~~--~~~~~~gt~~y~a---P----E~~~  176 (307)
T 2eva_A          108 CLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAG--GTVLKICDFGTACDIQT--HMTNNKGSAAWMA---P----EVFE  176 (307)
T ss_dssp             HHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETT--TTEEEECCCCC--------------CCTTSSC---H----HHHT
T ss_pred             HHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCC--CCEEEEccccccccccc--ccccCCCCCceEC---h----hhhC
Confidence            5699999999999   4     899999999875  32479999999875533  2334579999999   9    8887


Q ss_pred             ccCcce--------------eccCCCCCCCCC--hHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMND--PMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~--~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      +..++.              ++|..||. ...  .......+. .+ .....+..++.++.++|.+||..||.+||    
T Consensus       177 ~~~~~~~~Di~slG~il~el~~g~~p~~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rp----  249 (307)
T 2eva_A          177 GSNYSEKCDVFSWGIILWEVITRRKPFD-EIGGPAFRIMWAVH-NG-TRPPLIKNLPKPIESLMTRCWSKDPSQRP----  249 (307)
T ss_dssp             CCCCCTHHHHHHHHHHHHHHHHTCCTTT-TTCSSHHHHHHHHH-TT-CCCCCBTTCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCch-hhCccHHHHHHHHh-cC-CCCCcccccCHHHHHHHHHHhcCChhhCc----
Confidence            766654              89999997 432  233333444 22 34566678999999999999999999999    


Q ss_pred             CChhhhhc-----CCCCCCC
Q psy3184         147 GGIVDIKK-----HKWFQGF  161 (185)
Q Consensus       147 ~~~~~ll~-----hp~f~~~  161 (185)
                       ++.++++     ..++.+.
T Consensus       250 -s~~ell~~L~~~~~~~~~~  268 (307)
T 2eva_A          250 -SMEEIVKIMTHLMRYFPGA  268 (307)
T ss_dssp             -CHHHHHHHHHHHGGGCCCT
T ss_pred             -CHHHHHHHHHHHHHhccCC
Confidence             5587775     3555543

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.61  E-value=1.2e-15  Score=132.47  Aligned_cols=126  Identities=11%  Similarity=0.084  Sum_probs=97.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc----cccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI----LRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~----~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.+.....    .....+++.|+|   |    |+
T Consensus       441 i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~---~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~A---P----E~  510 (613)
T 2ozo_A          441 LLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRH---YAKISDFGLSKALGADDSYYTARSAGKWPLKWYA---P----EC  510 (613)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETT---EEEECCCSTTTTCC--------------CCTTSC---H----HH
T ss_pred             HHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCC---cEEEeeccCcccccCCCceeeeccCCCCccceeC---H----hh
Confidence            478999999999997     8999999999853   599999999976543221    122345689999   9    88


Q ss_pred             hhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +....|+.              ++ |..||. +.+..++...+. .+ .....|..+++++.+||.+||..||.+||++ 
T Consensus       511 ~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~-~~~~~~~~~~i~-~~-~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~-  586 (613)
T 2ozo_A          511 INFRKFSSRSDVWSYGVTMWEALSYGQKPYK-KMKGPEVMAFIE-QG-KRMECPPECPPELYALMSDCWIYKWEDRPDF-  586 (613)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TCCSHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHTTCSSTTTSCCH-
T ss_pred             hcCCCCCcHHHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCcCCHHHHHHHHHHcCCChhHCcCH-
Confidence            87766665              65 999999 888888888887 33 4567788899999999999999999999944 


Q ss_pred             CCChhhhh
Q psy3184         146 RGGIVDIK  153 (185)
Q Consensus       146 ~~~~~~ll  153 (185)
                          .+++
T Consensus       587 ----~~l~  590 (613)
T 2ozo_A          587 ----LTVE  590 (613)
T ss_dssp             ----HHHH
T ss_pred             ----HHHH
Confidence                6654

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.61  E-value=1.9e-15  Score=132.20  Aligned_cols=127  Identities=16%  Similarity=0.204  Sum_probs=99.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++......  ......|++.|+|   |    |++.
T Consensus       496 i~~qi~~aL~~LH~~givHrDikp~NILl~~~~---~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~a---P----E~~~  565 (656)
T 2j0j_A          496 YAYQLSTALAYLESKRFVHRDIAARNVLVSSND---CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMA---P----ESIN  565 (656)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETT---EEEECCCCCCCSCCC----------CCGGGCC---H----HHHH
T ss_pred             HHHHHHHHHHHHHhCCccccccchHhEEEeCCC---CEEEEecCCCeecCCCcceeccCCCCCcceeC---H----HHhc
Confidence            468999999999998     8999999999853   49999999998664432  2223567789999   9    8887


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...|+.              ++ |..||. +.+..+....+.. + ....+|..+++++.+||.+||..||.+||     
T Consensus       566 ~~~~~~~~DiwSlG~il~ellt~g~~Pf~-~~~~~~~~~~i~~-~-~~~~~~~~~~~~l~~li~~~l~~dP~~RP-----  637 (656)
T 2j0j_A          566 FRRFTSASDVWMFGVCMWEILMHGVKPFQ-GVKNNDVIGRIEN-G-ERLPMPPNCPPTLYSLMTKCWAYDPSRRP-----  637 (656)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TCCHHHHHHHHHH-T-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             CCCCCchhhHHHHHHHHHHHHHcCCCCCC-CCCHHHHHHHHHc-C-CCCCCCccccHHHHHHHHHHcCCChhHCc-----
Confidence            666654              54 999999 8888888888773 2 45677888999999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++.+++.
T Consensus       638 s~~el~~  644 (656)
T 2j0j_A          638 RFTELKA  644 (656)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            5577764

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.61  E-value=2e-15  Score=123.56  Aligned_cols=127  Identities=14%  Similarity=0.110  Sum_probs=87.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++......    ......+++.|+|   |    |+
T Consensus       152 i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  221 (373)
T 2qol_A          152 MLRGIASGMKYLSDMGYVHRDLAARNILINSNL---VCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTS---P----EA  221 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC---CEEECCC----------------------CTTSC---H----HH
T ss_pred             HHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCC---CEEECcCccccccccCCccceeccCCCcCCCccC---h----hh
Confidence            368999999999998     8999999998853   49999999998664432    1122345778999   9    88


Q ss_pred             hhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +....|+.              ++ |..||. +.+..+....+. .+ .....|..++.++.++|.+||..||.+||++ 
T Consensus       222 ~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~-  297 (373)
T 2qol_A          222 IAYRKFTSASDVWSYGIVLWEVMSYGERPYW-EMSNQDVIKAVD-EG-YRLPPPMDCPAALYQLMLDCWQKDRNNRPKF-  297 (373)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTC-CTTT-TCCHHHHHHHHH-TT-EECCCCTTCBHHHHHHHHHHTCSSGGGSCCH-
T ss_pred             hccCCcCchhcHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCccccHHHHHHHHHHhCcChhhCcCH-
Confidence            87666654              55 999999 778788777776 22 2445567789999999999999999999944 


Q ss_pred             CCChhhhhc
Q psy3184         146 RGGIVDIKK  154 (185)
Q Consensus       146 ~~~~~~ll~  154 (185)
                          .++++
T Consensus       298 ----~~i~~  302 (373)
T 2qol_A          298 ----EQIVS  302 (373)
T ss_dssp             ----HHHHH
T ss_pred             ----HHHHH
Confidence                66553

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.61  E-value=2.2e-16  Score=125.47  Aligned_cols=124  Identities=16%  Similarity=0.212  Sum_probs=91.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc---------------cccccCCcccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI---------------LRLLSGRPPFC   69 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~---------------~~~~~gt~~y~   69 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.+........               ....+||+.|+
T Consensus       113 i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~  189 (310)
T 3s95_A          113 FAKDIASGMAYLHSMNIIHRDLNSHNCLVRENK---NVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWM  189 (310)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSTTSEEECTTS---CEEECCCTTCEECC--------------------CCCCSCGGGC
T ss_pred             HHHHHHHHHHHHHhCCccCCCCCcCeEEECCCC---CEEEeecccceecccccccccccccccccccccccccCCCccee
Confidence            478999999999998     8999999998853   399999999986643221               12568999999


Q ss_pred             ccCCCcccccchhccCcce--------------eccCCCCCCCCChHH-----HHHHHHhcCCCccCCCCCCCHHHHHHH
Q psy3184          70 VMNDPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQ-----TYNMIINVGIDKIPFPKHVTRTAQSLI  130 (185)
Q Consensus        70 a~~~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~-----~~~~i~~~~~~~~~~p~~~s~~~~~li  130 (185)
                      |   |    |++.+..|+.              ++|..||. ......     ......     ....|..+++++.++|
T Consensus       190 a---P----E~~~~~~~~~~~Di~slG~~l~el~~g~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~li  256 (310)
T 3s95_A          190 A---P----EMINGRSYDEKVDVFSFGIVLCEIIGRVNADP-DYLPRTMDFGLNVRGFL-----DRYCPPNCPPSFFPIT  256 (310)
T ss_dssp             C---H----HHHTTCCCCTHHHHHHHHHHHHHHHHTCCSST-TTSCBCTTSSBCHHHHH-----HHTCCTTCCTTHHHHH
T ss_pred             C---H----HHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCc-chhhhHHHHhhhhhccc-----cccCCCCCCHHHHHHH
Confidence            9   9    8887766664              77888886 322110     111111     2345677899999999


Q ss_pred             HHHhhcCcCcccCCCCCChhhhhc
Q psy3184         131 KALCKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       131 ~~~l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      .+||..||.+||     ++.++++
T Consensus       257 ~~~l~~dP~~Rp-----s~~~l~~  275 (310)
T 3s95_A          257 VRCCDLDPEKRP-----SFVKLEH  275 (310)
T ss_dssp             HHHTCSSGGGSC-----CHHHHHH
T ss_pred             HHHccCChhhCc-----CHHHHHH
Confidence            999999999999     5577765

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.61  E-value=5.7e-16  Score=123.67  Aligned_cols=126  Identities=22%  Similarity=0.279  Sum_probs=75.6

Q ss_pred             cHHHHHHHHHHHhhc-------CCCCCceEEccCCCCCeeEEcccCceeEeecCcc-------------cccccCCcccc
Q psy3184          10 DTLQVKEMVESMHQA-------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI-------------LRLLSGRPPFC   69 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~-------------~~~~~gt~~y~   69 (185)
                      .+.||+.||.|||+.       ||||+||+++.+.   .++|+|||.+........             ....+||+.|+
T Consensus       141 i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~  217 (337)
T 3ll6_A          141 IFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQG---TIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYR  217 (337)
T ss_dssp             HHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTS---CEEBCCCTTCBCCSSCC-------------------------
T ss_pred             HHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCC---CEEEecCccceeccccCcccccccccccchhhccccCCCCcC
Confidence            467999999999976       6799999998853   499999999986643211             12557999999


Q ss_pred             ccCCCcccccchh---ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHH
Q psy3184          70 VMNDPMQTYNMII---NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKA  132 (185)
Q Consensus        70 a~~~P~~~~E~~~---~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~  132 (185)
                      |   |    |++.   ...++.              ++|..||. ..+.........     ....+...+..+.+||.+
T Consensus       218 a---P----E~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~li~~  284 (337)
T 3ll6_A          218 T---P----EIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFE-DGAKLRIVNGKY-----SIPPHDTQYTVFHSLIRA  284 (337)
T ss_dssp             -------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-------------C-----CCCTTCCSSGGGHHHHHH
T ss_pred             C---h----hhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCc-chhHHHhhcCcc-----cCCcccccchHHHHHHHH
Confidence            9   9    7762   333333              89999998 554443332222     334446678899999999


Q ss_pred             HhhcCcCcccCCCCCChhhhhcCC
Q psy3184         133 LCKESPAERLGYQRGGIVDIKKHK  156 (185)
Q Consensus       133 ~l~~dp~~R~~~~~~~~~~ll~hp  156 (185)
                      ||..||.+||     ++.++++|-
T Consensus       285 ~l~~~p~~Rp-----s~~e~l~~l  303 (337)
T 3ll6_A          285 MLQVNPEERL-----SIAEVVHQL  303 (337)
T ss_dssp             HSCSSGGGSC-----CHHHHHHHH
T ss_pred             HccCChhhCc-----CHHHHHHHH
Confidence            9999999999     558888763

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.60  E-value=2.2e-15  Score=118.71  Aligned_cols=127  Identities=10%  Similarity=0.095  Sum_probs=90.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.   .++|+|||.+.......    ......|++.|+|   |    |+
T Consensus       119 ~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  188 (295)
T 3ugc_A          119 YTSQICKGMEYLGTKRYIHRDLATRNILVENEN---RVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYA---P----ES  188 (295)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETT---EEEECCCCSCC-------------CTTCGGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCC---eEEEccCcccccccCCcceeeeccCCCCccceeC---c----HH
Confidence            367999999999998     8999999999853   49999999998664432    2234467788999   9    88


Q ss_pred             hhccCcce--------------eccCCCCCCCCChH----------------HHHHHHHhcCCCccCCCCCCCHHHHHHH
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPM----------------QTYNMIINVGIDKIPFPKHVTRTAQSLI  130 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~----------------~~~~~i~~~~~~~~~~p~~~s~~~~~li  130 (185)
                      +....|+.              ++|..||. .....                .....+..  ......|..+++++.+||
T Consensus       189 ~~~~~~~~~~Di~slG~~l~~l~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~li  265 (295)
T 3ugc_A          189 LTESKFSVASDVWSFGVVLYELFTYIEKSK-SPPAEFMRMIGNDKQGQMIVFHLIELLKN--NGRLPRPDGCPDEIYMIM  265 (295)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHHTTCTTC-SHHHHHHHHHCTTCCTHHHHHHHHHHHHT--TCCCCCCTTCCHHHHHHH
T ss_pred             hcCCCCChHHHHHHHHHHHHHHHhcccccC-CChHHHHhhhcCccccchhHHHHHHHHhc--cCcCCCCcCcCHHHHHHH
Confidence            87766664              78888875 22111                22223331  235566788999999999


Q ss_pred             HHHhhcCcCcccCCCCCChhhhhc
Q psy3184         131 KALCKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       131 ~~~l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      .+||..||.+||     ++.+++.
T Consensus       266 ~~~l~~dp~~Rp-----s~~el~~  284 (295)
T 3ugc_A          266 TECWNNNVNQRP-----SFRDLAL  284 (295)
T ss_dssp             HHHSCSSGGGSC-----CHHHHHH
T ss_pred             HHHcCCChhhCC-----CHHHHHH
Confidence            999999999999     5577664

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.60  E-value=3.8e-15  Score=118.36  Aligned_cols=127  Identities=13%  Similarity=0.130  Sum_probs=94.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec------CcccccccCCccccccCCCcccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD------GKILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~------~~~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      .+.||+.||+|||+.     ||||+||+++.+    .++|+|||++.....      ........||+.|+|   |    
T Consensus       135 i~~qi~~al~~lH~~~i~H~dlkp~NIl~~~~----~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~a---P----  203 (319)
T 2y4i_B          135 IAQEIVKGMGYLHAKGILHKDLKSKNVFYDNG----KVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLA---P----  203 (319)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCSTTEEEC------CCEECCCSCCC----------CCSCBCCSGGGGTSC---H----
T ss_pred             HHHHHHHHHHHHHhCCccccCCChhhEEEeCC----CEEEeecCCccccccccccccccccccCCCcccccC---h----
Confidence            478999999999998     899999999842    489999998765432      123334579999999   9    


Q ss_pred             cchhcc---------Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhh
Q psy3184          79 NMIINV---------GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCK  135 (185)
Q Consensus        79 E~~~~~---------~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~  135 (185)
                      |++...         .|+.              ++|..||. +.+.......+. .+......+..++.++.++|.+||.
T Consensus       204 E~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~  281 (319)
T 2y4i_B          204 EIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFK-TQPAEAIIWQMG-TGMKPNLSQIGMGKEISDILLFCWA  281 (319)
T ss_dssp             HHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSS-SCCHHHHHHHHH-TTCCCCCCCSSCCTTHHHHHHHHHC
T ss_pred             HHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCC-CCCHHHHHHHhc-cCCCCCCCcCCCCHHHHHHHHHHhc
Confidence            776531         2332              89999999 888888777776 3322333334689999999999999


Q ss_pred             cCcCcccCCCCCChhhhhc
Q psy3184         136 ESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       136 ~dp~~R~~~~~~~~~~ll~  154 (185)
                      .||.+||     ++.++++
T Consensus       282 ~~p~~Rp-----t~~~l~~  295 (319)
T 2y4i_B          282 FEQEERP-----TFTKLMD  295 (319)
T ss_dssp             SSTTTSC-----CHHHHHH
T ss_pred             CChhhCc-----CHHHHHH
Confidence            9999999     5577765

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.60  E-value=1.7e-15  Score=121.23  Aligned_cols=137  Identities=12%  Similarity=0.142  Sum_probs=96.7

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.   .++|+|||.+.......    ......||+.|+|   |    |+
T Consensus       132 i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  201 (327)
T 3lxl_A          132 YSSQICKGMEYLGSRRCVHRDLAARNILVESEA---HVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYA---P----ES  201 (327)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEEEETT---EEEECCGGGCEECCTTCSEEECSSCCCSCGGGSC---H----HH
T ss_pred             HHHHHHHHHHHHHhCCccCCCCChhhEEECCCC---CEEEcccccceecccCCccceeeccCCccccccC---H----HH
Confidence            367999999999998     8999999998853   49999999998765432    2234568889999   9    88


Q ss_pred             hhccCcce--------------eccCCCCCCCCCh---------------HHHHHHHHhcCCCccCCCCCCCHHHHHHHH
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDP---------------MQTYNMIINVGIDKIPFPKHVTRTAQSLIK  131 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~---------------~~~~~~i~~~~~~~~~~p~~~s~~~~~li~  131 (185)
                      +.+..++.              ++|..||. ....               ......+. . ......|..+++++.+||.
T Consensus       202 ~~~~~~~~~~Di~slG~il~~ll~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~li~  278 (327)
T 3lxl_A          202 LSDNIFSRQSDVWSFGVVLYELFTYCDKSC-SPSAEFLRMMGCERDVPALSRLLELLE-E-GQRLPAPPACPAEVHELMK  278 (327)
T ss_dssp             HHHCEEEHHHHHHHHHHHHHHHHTTTCGGG-SHHHHHHHHCC----CCHHHHHHHHHH-T-TCCCCCCTTCCHHHHHHHH
T ss_pred             hccCCCChHHhHHHHHHHHHHHHhCCCCCc-cccchhhhhcccccccccHHHHHHHhh-c-ccCCCCCCcccHHHHHHHH
Confidence            87665554              88999986 3322               12233333 1 2355667789999999999


Q ss_pred             HHhhcCcCcccCCCCCChhhhhc---CCCCCCCChh
Q psy3184         132 ALCKESPAERLGYQRGGIVDIKK---HKWFQGFDWD  164 (185)
Q Consensus       132 ~~l~~dp~~R~~~~~~~~~~ll~---hp~f~~~~~~  164 (185)
                      +||..||.+||     ++.++++   ..|.....+.
T Consensus       279 ~~l~~dP~~Rp-----s~~ell~~L~~~~~~~~~~~  309 (327)
T 3lxl_A          279 LCWAPSPQDRP-----SFSALGPQLDMLWSGSRGCE  309 (327)
T ss_dssp             HHTCSSGGGSC-----CHHHHHHHHHHC--------
T ss_pred             HHcCCChhhCc-----CHHHHHHHHHHHHhhhcCcc
Confidence            99999999999     5588754   3454443333

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.60  E-value=4.3e-15  Score=117.83  Aligned_cols=128  Identities=17%  Similarity=0.165  Sum_probs=85.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||.|||+.     ||+|+||+++.+.   .++|+|||.+...... .......|++.|+|   |    |++..
T Consensus       141 i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~a---P----E~~~~  210 (310)
T 2wqm_A          141 YFVQLCSALEHMHSRRVMHRDIKPANVFITATG---VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMS---P----ERIHE  210 (310)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS---CEEECCC------------------CCSSCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCC---CEEEEeccceeeecCCCccccccCCCeeEeC---h----HHhCC
Confidence            367999999999998     7899999998753   4999999998765443 23345689999999   9    88776


Q ss_pred             cCcce--------------eccCCCCCCCC--ChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMN--DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~--~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ..++.              ++|..||. +.  +.......+. .+......+..++.++.+||.+||..||.+||     
T Consensus       211 ~~~~~~~Dv~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rp-----  283 (310)
T 2wqm_A          211 NGYNFKSDIWSLGCLLYEMAALQSPFY-GDKMNLYSLCKKIE-QCDYPPLPSDHYSEELRQLVNMCINPDPEKRP-----  283 (310)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCTTC----CCHHHHHHHHH-TTCSCCCCTTTSCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCc-ccchhHHHHHHHhh-cccCCCCcccccCHHHHHHHHHHcCCChhhCC-----
Confidence            65554              89999997 43  3345555555 22112222356899999999999999999999     


Q ss_pred             Chhhhhc
Q psy3184         148 GIVDIKK  154 (185)
Q Consensus       148 ~~~~ll~  154 (185)
                      ++.++++
T Consensus       284 s~~~il~  290 (310)
T 2wqm_A          284 DVTYVYD  290 (310)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            5587775

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.59  E-value=2.6e-15  Score=128.42  Aligned_cols=132  Identities=14%  Similarity=0.178  Sum_probs=103.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++......  ......++..|+|   |    |++.
T Consensus       368 i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~---~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~a---P----E~~~  437 (535)
T 2h8h_A          368 MAAQIASGMAYVERMNYVHRDLRAANILVGENL---VCKVADFGLARLIEDNEYTARQGAKFPIKWTA---P----EAAL  437 (535)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG---CEEECCTTSTTTCCCHHHHTTCSTTSCGGGSC---H----HHHH
T ss_pred             HHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCC---cEEEcccccceecCCCceecccCCcCcccccC---H----HHhc
Confidence            368999999999997     8999999998753   49999999997654321  1223456788999   9    8887


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...|+.              ++ |..||. +.+..++...+. .+ .....|..++.++.+||.+||..||.+||     
T Consensus       438 ~~~~~~~sDvwSlGv~l~el~t~g~~P~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----  509 (535)
T 2h8h_A          438 YGRFTIKSDVWSFGILLTELTTKGRVPYP-GMVNREVLDQVE-RG-YRMPCPPECPESLHDLMCQCWRKEPEERP-----  509 (535)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHTTTTCCSST-TCCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHcCCChhHCc-----
Confidence            666654              66 899999 888888888777 33 35566788999999999999999999999     


Q ss_pred             ChhhhhcC--CCCC
Q psy3184         148 GIVDIKKH--KWFQ  159 (185)
Q Consensus       148 ~~~~ll~h--p~f~  159 (185)
                      ++++|+..  .+|.
T Consensus       510 t~~~l~~~L~~~~~  523 (535)
T 2h8h_A          510 TFEYLQAFLEDYFT  523 (535)
T ss_dssp             CHHHHHHHHHTSSC
T ss_pred             CHHHHHHHHHHHhh
Confidence            55877753  5554

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.59  E-value=3.5e-15  Score=117.52  Aligned_cols=130  Identities=15%  Similarity=0.270  Sum_probs=90.2

Q ss_pred             cHHHHHHHHHHHh--------hc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc-----cccccCCcccccc
Q psy3184          10 DTLQVKEMVESMH--------QA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI-----LRLLSGRPPFCVM   71 (185)
Q Consensus        10 ~~~qi~~~l~~lH--------~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~-----~~~~~gt~~y~a~   71 (185)
                      .+.||+.||+|||        +.     ||||+||+++.+.   .++|+|||.++.......     ....+||+.|+| 
T Consensus       110 i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~a-  185 (301)
T 3q4u_A          110 IVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNG---QCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMA-  185 (301)
T ss_dssp             HHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTS---CEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCC-
T ss_pred             HHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCC---CEEEeeCCCeeecccccccccccccccccccceeC-
Confidence            4789999999999        65     8999999998753   499999999987655322     234589999999 


Q ss_pred             CCCcccccchhcc------Ccce--------------ecc----------CCCCCCC---CChHHHHHHHHhcCCCccCC
Q psy3184          72 NDPMQTYNMIINV------GIDN--------------IFS----------RPPFCVM---NDPMQTYNMIINVGIDKIPF  118 (185)
Q Consensus        72 ~~P~~~~E~~~~~------~~~~--------------l~g----------~~Pf~~~---~~~~~~~~~i~~~~~~~~~~  118 (185)
                        |    |++...      .++.              ++|          ..||...   .................+.+
T Consensus       186 --P----E~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (301)
T 3q4u_A          186 --P----EVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNI  259 (301)
T ss_dssp             --H----HHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCC
T ss_pred             --h----hhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCCCCC
Confidence              9    877654      2221              777          8888621   11222333332122223344


Q ss_pred             CC-----CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhc
Q psy3184         119 PK-----HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       119 p~-----~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      |.     ..+.++.+||.+||..||.+||     ++.++++
T Consensus       260 ~~~~~~~~~~~~l~~li~~cl~~dP~~Rp-----s~~~i~~  295 (301)
T 3q4u_A          260 PNRWFSDPTLTSLAKLMKECWYQNPSARL-----TALRIKK  295 (301)
T ss_dssp             CGGGGGSHHHHHHHHHHHHHCCSSGGGSC-----CHHHHHH
T ss_pred             ChhhccCccHHHHHHHHHHHhhcChhhCC-----CHHHHHH
Confidence            42     2567899999999999999999     5577764

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.59  E-value=1.4e-15  Score=123.15  Aligned_cols=130  Identities=12%  Similarity=0.100  Sum_probs=92.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--------ccccccCCccccccCCCcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--------ILRLLSGRPPFCVMNDPMQ   76 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--------~~~~~~gt~~y~a~~~P~~   76 (185)
                      .+.||+.||+|||++     ||||+||+++.+.. ..++|+|||+++.+....        ......||+.|+|   |  
T Consensus       164 i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~~~~-~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~a---P--  237 (352)
T 2jii_A          164 VACRLLDALEFLHENEYVHGNVTAENIFVDPEDQ-SQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFIS---M--  237 (352)
T ss_dssp             HHHHHHHHHHHHHHTTCBCSCCCGGGEEEETTEE-EEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCC---H--
T ss_pred             HHHHHHHHHHHHHhCCccCCCCCHHHEEEcCCCC-ceEEEecCcceeeccCCCccccccccccccccCCccccC---H--
Confidence            478999999999998     89999999987531 149999999997664321        2234589999999   9  


Q ss_pred             cccchhccCcce--------------eccCCCCCCCC--ChHHHHHHHHhcCCCccCCC------CCCCHHHHHHHHHHh
Q psy3184          77 TYNMIINVGIDN--------------IFSRPPFCVMN--DPMQTYNMIINVGIDKIPFP------KHVTRTAQSLIKALC  134 (185)
Q Consensus        77 ~~E~~~~~~~~~--------------l~g~~Pf~~~~--~~~~~~~~i~~~~~~~~~~p------~~~s~~~~~li~~~l  134 (185)
                        |++.+..|+.              ++|..||. +.  +.................++      ..++.++.+||.+||
T Consensus       238 --E~~~~~~~~~~~Di~slG~il~el~~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l  314 (352)
T 2jii_A          238 --DLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWT-NCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVM  314 (352)
T ss_dssp             --HHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTG-GGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHH
T ss_pred             --HHHccCCCCchhhHHHHHHHHHHHHhCCCCcc-cCCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHH
Confidence              8887766654              89999998 44  33333322210001122222      246999999999999


Q ss_pred             hcCcCcccCCCCCChhhhh
Q psy3184         135 KESPAERLGYQRGGIVDIK  153 (185)
Q Consensus       135 ~~dp~~R~~~~~~~~~~ll  153 (185)
                      ..||.+||+     +.+++
T Consensus       315 ~~dp~~Rps-----~~~l~  328 (352)
T 2jii_A          315 ALTYEEKPP-----YAMLR  328 (352)
T ss_dssp             TCCTTCCCC-----HHHHH
T ss_pred             hCChhhCCC-----HHHHH
Confidence            999999994     46654

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.57  E-value=7.8e-15  Score=117.38  Aligned_cols=128  Identities=9%  Similarity=0.002  Sum_probs=89.7

Q ss_pred             cHHHHHHHHHHHhhc---------------CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA---------------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVM   71 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~---------------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~   71 (185)
                      .+.||+.||.|||+.               ||||+||+++.+.   .++|+|||.++......   .....+||+.|+| 
T Consensus       126 i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~---~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~a-  201 (322)
T 3soc_A          126 IAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNL---TACIADFGLALKFEAGKSAGDTHGQVGTRRYMA-  201 (322)
T ss_dssp             HHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTC---CEEECCCTTCEEECTTSCCCCCTTCCCCGGGCC-
T ss_pred             HHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCC---eEEEccCCcccccccccCccccccCccCccccC-
Confidence            478999999999974               7999999998853   49999999998775432   2334689999999 


Q ss_pred             CCCcccccchhcc-----Ccce--------------eccCCCCCCCCC----------------hHHHHHHHHhcCCCcc
Q psy3184          72 NDPMQTYNMIINV-----GIDN--------------IFSRPPFCVMND----------------PMQTYNMIINVGIDKI  116 (185)
Q Consensus        72 ~~P~~~~E~~~~~-----~~~~--------------l~g~~Pf~~~~~----------------~~~~~~~i~~~~~~~~  116 (185)
                        |    |++.+.     .++.              ++|..||. +..                .......+. .....+
T Consensus       202 --P----E~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  273 (322)
T 3soc_A          202 --P----EVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAAD-GPVDEYMLPFEEEIGQHPSLEDMQEVVV-HKKKRP  273 (322)
T ss_dssp             --H----HHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSS-SCCCCCCCTTHHHHCSSCCHHHHHHHHT-TSCCCC
T ss_pred             --H----hhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCC-CCcchhccchhhhhccCCchhhhhhhhh-cccCCC
Confidence              9    877652     2221              89999997 432                222333333 221223


Q ss_pred             CCCCC-----CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhc
Q psy3184         117 PFPKH-----VTRTAQSLIKALCKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       117 ~~p~~-----~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      .++..     .+.++.+||.+||..||.+||     ++.++++
T Consensus       274 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rp-----s~~ell~  311 (322)
T 3soc_A          274 VLRDYWQKHAGMAMLCETIEECWDHDAEARL-----SAGCVGE  311 (322)
T ss_dssp             CCCGGGGSSHHHHHHHHHHHHHTCSSGGGSC-----CHHHHHH
T ss_pred             CccccccccchHHHHHHHHHHHccCChhhCc-----CHHHHHH
Confidence            33321     345699999999999999999     5577764

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.57  E-value=1.5e-15  Score=119.05  Aligned_cols=126  Identities=17%  Similarity=0.198  Sum_probs=93.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCC-----eeEEcccCceeEeecCcccccccCCccccccCCCccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGN-----DLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~-----~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      .+.||+.||.|||++     ||||+||+++.+....     .++++|||.+.....   .....||+.|+|   |    |
T Consensus       118 i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~---~~~~~~~~~y~a---P----E  187 (289)
T 4fvq_A          118 VAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLP---KDILQERIPWVP---P----E  187 (289)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSC---HHHHHHTTTTSC---H----H
T ss_pred             HHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceeeeccCcccccccC---ccccCCcCcccC---H----H
Confidence            477999999999998     8899999998763210     189999998754322   234568899999   9    8


Q ss_pred             chhc-cCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          80 MIIN-VGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        80 ~~~~-~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                      ++.+ ..++.              ++ +.+||. ..+.........    ....+|...+.++.+||.+||..||.+|| 
T Consensus       188 ~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~l~~li~~~l~~dp~~Rp-  261 (289)
T 4fvq_A          188 CIENPKNLNLATDKWSFGTTLWEICSGGDKPLS-ALDSQRKLQFYE----DRHQLPAPKAAELANLINNCMDYEPDHRP-  261 (289)
T ss_dssp             HHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTT-TSCHHHHHHHHH----TTCCCCCCSSCTTHHHHHHHSCSSGGGSC-
T ss_pred             HhCCCCCCCchhHHHHHHHHHHHHHcCCCCCcc-ccchHHHHHHhh----ccCCCCCCCCHHHHHHHHHHcCCChhHCc-
Confidence            8776 43443              67 456665 655555444443    35667777899999999999999999999 


Q ss_pred             CCCCChhhhhcC
Q psy3184         144 YQRGGIVDIKKH  155 (185)
Q Consensus       144 ~~~~~~~~ll~h  155 (185)
                          ++.++++|
T Consensus       262 ----s~~~ll~~  269 (289)
T 4fvq_A          262 ----SFRAIIRD  269 (289)
T ss_dssp             ----CHHHHHHH
T ss_pred             ----CHHHHHHH
Confidence                55888875

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.57  E-value=8.6e-15  Score=115.46  Aligned_cols=128  Identities=10%  Similarity=0.117  Sum_probs=94.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.+.......    ......||+.|+|   |    |+
T Consensus       131 ~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  200 (302)
T 4e5w_A          131 YAVQICKGMDYLGSRQYVHRDLAARNVLVESEH---QVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYA---P----EC  200 (302)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEEEETT---EEEECCCTTCEECCTTCCEEECCCCTTCCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHhhcCCcccCCCchheEEEcCCC---CEEECcccccccccCCCcceeccCCCCCCccccC---C----ee
Confidence            467999999999998     8999999998853   49999999998775542    2334678889999   9    88


Q ss_pred             hhccCcce--------------eccCCCCCC-------------C-CChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHH
Q psy3184          81 IINVGIDN--------------IFSRPPFCV-------------M-NDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKA  132 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~-------------~-~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~  132 (185)
                      +.+..++.              ++|..|+..             + .........+. . ......|..+++++.+||.+
T Consensus       201 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~li~~  278 (302)
T 4e5w_A          201 LMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLK-E-GKRLPCPPNCPDEVYQLMRK  278 (302)
T ss_dssp             HHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHH-T-TCCCCCCTTCCHHHHHHHHH
T ss_pred             ecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHh-c-cCCCCCCCCCCHHHHHHHHH
Confidence            87665554              777776530             1 11222333333 1 23556778899999999999


Q ss_pred             HhhcCcCcccCCCCCChhhhhc
Q psy3184         133 LCKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       133 ~l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      ||..||.+||     ++.++++
T Consensus       279 ~l~~dp~~Rp-----s~~~ll~  295 (302)
T 4e5w_A          279 CWEFQPSNRT-----SFQNLIE  295 (302)
T ss_dssp             TTCSSGGGSC-----CHHHHHH
T ss_pred             HcCCCCCCCC-----CHHHHHH
Confidence            9999999999     5577764

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.56  E-value=8.1e-15  Score=117.01  Aligned_cols=127  Identities=10%  Similarity=0.091  Sum_probs=94.5

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||.|||+.     ||||+||+++.+.   .++|+|||.+.......    ......|++.|+|   |    |+
T Consensus       139 i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  208 (318)
T 3lxp_A          139 FAQQICEGMAYLHAQHYIHRDLAARNVLLDNDR---LVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYA---P----EC  208 (318)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC---CEEECCGGGCEECCTTCSEEEC---CCCCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHhCCccCCCCchheEEEcCCC---CEEECCccccccccccccccccccCCCCCceeeC---h----HH
Confidence            478999999999998     8999999998863   49999999998775542    2334568889999   9    88


Q ss_pred             hhccCcce--------------eccCCCCCCCCChH---------------HHHHHHHhcCCCccCCCCCCCHHHHHHHH
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPM---------------QTYNMIINVGIDKIPFPKHVTRTAQSLIK  131 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~---------------~~~~~i~~~~~~~~~~p~~~s~~~~~li~  131 (185)
                      +.+..++.              ++|..||. .....               .....+. . ......|..++.++.+||+
T Consensus       209 ~~~~~~~~~~Di~slG~il~~ll~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~li~  285 (318)
T 3lxp_A          209 LKEYKFYYASDVWSFGVTLYELLTHCDSSQ-SPPTKFLELIGIAQGQMTVLRLTELLE-R-GERLPRPDKCPAEVYHLMK  285 (318)
T ss_dssp             HHHCEEEHHHHHHHHHHHHHHHHTTTCGGG-SHHHHHHHHHCSCCHHHHHHHHHHHHH-T-TCCCCCCTTCCHHHHHHHH
T ss_pred             hcCCCCCcHHHHHHHHHHHHHHHhCCCccc-ccchhhhhhhcccccchhHHHHHHHHh-c-ccCCCCCccccHHHHHHHH
Confidence            87655554              88999997 32211               1122222 1 2355667889999999999


Q ss_pred             HHhhcCcCcccCCCCCChhhhhc
Q psy3184         132 ALCKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       132 ~~l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      +||..||.+||     ++.++++
T Consensus       286 ~~l~~dP~~Rp-----s~~ell~  303 (318)
T 3lxp_A          286 NCWETEASFRP-----TFENLIP  303 (318)
T ss_dssp             HHTCSSGGGSC-----CHHHHHH
T ss_pred             HHcCCCcccCc-----CHHHHHH
Confidence            99999999999     5577764

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.55  E-value=1.6e-15  Score=121.09  Aligned_cols=130  Identities=12%  Similarity=0.076  Sum_probs=91.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++.....   .......||+.|+|   |    |++
T Consensus       144 i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~a---P----E~~  213 (321)
T 2qkw_B          144 ICIGAARGLHYLHTRAIIHRDVKSINILLDENF---VPKITDFGISKKGTELDQTHLSTVVKGTLGYID---P----EYF  213 (321)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCSTTEEECTTC---CEEECCCTTCEECSSSSCCCCBCCCEEETTTCC---H----HHH
T ss_pred             HHHHHHHHHHHhcCCCeecCCCCHHHEEECCCC---CEEEeecccccccccccccccccccCCCccccC---H----HHh
Confidence            478999999999997     8999999998753   4999999999865432   22334578999999   9    887


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHH---H---HHHHhcCC-C---cc----CCCCCCCHHHHHHHHHH
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQT---Y---NMIINVGI-D---KI----PFPKHVTRTAQSLIKAL  133 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~---~---~~i~~~~~-~---~~----~~p~~~s~~~~~li~~~  133 (185)
                      ....++.              ++|..||. +....+.   .   ......+. .   ..    .++...+.++.+++.+|
T Consensus       214 ~~~~~~~~~Di~slG~il~ell~g~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  292 (321)
T 2qkw_B          214 IKGRLTEKSDVYSFGVVLFEVLCARSAIV-QSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKC  292 (321)
T ss_dssp             HHCBCCTHHHHHHHHHHHHHHHHCCTTCS-CSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCcccchHhHHHHHHHHHhCCCccc-ccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHH
Confidence            7665554              89999997 4432211   1   11110110 0   01    12233467889999999


Q ss_pred             hhcCcCcccCCCCCChhhhhcC
Q psy3184         134 CKESPAERLGYQRGGIVDIKKH  155 (185)
Q Consensus       134 l~~dp~~R~~~~~~~~~~ll~h  155 (185)
                      |..||.+||     ++.+++.+
T Consensus       293 l~~dP~~Rp-----s~~ell~~  309 (321)
T 2qkw_B          293 LALSSEDRP-----SMGDVLWK  309 (321)
T ss_dssp             TCSSGGGSC-----CHHHHHHH
T ss_pred             cCCCcccCc-----CHHHHHHH
Confidence            999999999     55888765

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.55  E-value=1e-14  Score=116.79  Aligned_cols=136  Identities=10%  Similarity=0.147  Sum_probs=90.4

Q ss_pred             cHHHHHHHHHHHhhc--------------CCCCCceEEccCCCCCeeEEcccCceeEeecC---------cccccccCCc
Q psy3184          10 DTLQVKEMVESMHQA--------------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---------KILRLLSGRP   66 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~--------------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---------~~~~~~~gt~   66 (185)
                      .+.||+.||.|||+.              ||||+||+++.+.   .++|+|||.++.+...         ......+||+
T Consensus       116 i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~---~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~  192 (336)
T 3g2f_A          116 LAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDG---TCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTI  192 (336)
T ss_dssp             HHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTS---CEEECCCTTCEECSSSSCC---------CCTTSCG
T ss_pred             HHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCC---cEEEeeccceeecccccccCccccccccccCCCcc
Confidence            478999999999964              6899999998853   4999999999876432         1233567999


Q ss_pred             cccccCCCcccccchhc-------cCcce--------------eccCCCCCCCCCh----------------HHHHHHHH
Q psy3184          67 PFCVMNDPMQTYNMIIN-------VGIDN--------------IFSRPPFCVMNDP----------------MQTYNMII  109 (185)
Q Consensus        67 ~y~a~~~P~~~~E~~~~-------~~~~~--------------l~g~~Pf~~~~~~----------------~~~~~~i~  109 (185)
                      .|+|   |    |++.+       ..++.              ++|..||..+.+.                ........
T Consensus       193 ~y~a---P----E~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (336)
T 3g2f_A          193 RYMA---P----EVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLV  265 (336)
T ss_dssp             GGCC---H----HHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHH
T ss_pred             ceeC---c----hhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhh
Confidence            9999   9    77764       12221              6776655312221                11112222


Q ss_pred             hcCCCccCCCCC------CCHHHHHHHHHHhhcCcCcccCCCCCChhhh------hcCCCCCC
Q psy3184         110 NVGIDKIPFPKH------VTRTAQSLIKALCKESPAERLGYQRGGIVDI------KKHKWFQG  160 (185)
Q Consensus       110 ~~~~~~~~~p~~------~s~~~~~li~~~l~~dp~~R~~~~~~~~~~l------l~hp~f~~  160 (185)
                      ......+.+|..      ++.++.+||.+||..||.+||     ++.++      +.++|-++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rp-----s~~e~l~~L~~ll~~~~~~  323 (336)
T 3g2f_A          266 SREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARL-----TAQXAEERMAELMMIWERN  323 (336)
T ss_dssp             TTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSC-----CHHHHHHHHHHHHHCCCC-
T ss_pred             cccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCc-----chHHHHHHHHHHHHHHHhc
Confidence            122234455543      345899999999999999999     55887      44677654

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.55  E-value=3.3e-15  Score=122.97  Aligned_cols=131  Identities=13%  Similarity=0.150  Sum_probs=92.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccC-CCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEG-EAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~-~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      .+.||+.||+|||++     ||||+||++..+ .....++|+|||.++...........+||+.|+|   |    |++..
T Consensus       117 i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~a---P----E~~~~  189 (396)
T 4eut_A          117 VLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLH---P----DMYER  189 (396)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGSSCSSSCCTTCC---H----HHHHH
T ss_pred             HHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCccccccCCccccC---H----HHhhc
Confidence            478999999999998     899999998321 1122489999999998766666667889999999   9    77653


Q ss_pred             --------cCcce--------------eccCCCCCCC---CChHHHHHHHHhcCCCcc-----------------CCC--
Q psy3184          84 --------VGIDN--------------IFSRPPFCVM---NDPMQTYNMIINVGIDKI-----------------PFP--  119 (185)
Q Consensus        84 --------~~~~~--------------l~g~~Pf~~~---~~~~~~~~~i~~~~~~~~-----------------~~p--  119 (185)
                              ..|+.              ++|..||...   .+..+....+. .+....                 .+|  
T Consensus       190 ~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~  268 (396)
T 4eut_A          190 AVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKII-TGKPSGAISGVQKAENGPIDWSGDMPVS  268 (396)
T ss_dssp             HCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHH-HSCCTTCCEEEECSTTCCEEEESSCCTT
T ss_pred             cccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHh-cCCCcccchhheeccCCCcccCccCCcc
Confidence                    22332              8899999621   33445555655 221100                 111  


Q ss_pred             ----CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhh
Q psy3184         120 ----KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIK  153 (185)
Q Consensus       120 ----~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll  153 (185)
                          ..++..+.++|.+||..||.+|++     +.+++
T Consensus       269 ~~l~~~~~~~l~~ll~~~L~~dP~~R~s-----~~e~l  301 (396)
T 4eut_A          269 CSLSRGLQVLLTPVLANILEADQEKCWG-----FDQFF  301 (396)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCCCTTTSCC-----HHHHH
T ss_pred             cccchHHHhhchHHHHHhhccChhhhcc-----HHHHH
Confidence                234578889999999999999994     46654

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.54  E-value=5.9e-15  Score=116.75  Aligned_cols=129  Identities=19%  Similarity=0.272  Sum_probs=83.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||++     ||||+||+++.+.....++|+|||.+.......          |..  .-    .+..-.
T Consensus       122 i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~----------~~~--~~----DiwslG  185 (299)
T 3m2w_A          122 IMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTGEK----------YDK--SC----DMWSLG  185 (299)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTTCG----------GGG--HH----HHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEecccccccccccc----------CCc--hh----hHHHHH
Confidence            478999999999998     899999999974322359999999987553211          100  00    111100


Q ss_pred             --CcceeccCCCCCCCCChHHHHHHHHhc-CCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCC
Q psy3184          85 --GIDNIFSRPPFCVMNDPMQTYNMIINV-GIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKW  157 (185)
Q Consensus        85 --~~~~l~g~~Pf~~~~~~~~~~~~i~~~-~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~  157 (185)
                        -|..++|..||. +.+.......+... ......+|    ..++.++.+||.+||..||.+||     ++.++++|||
T Consensus       186 ~il~el~tg~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rp-----s~~e~l~hp~  259 (299)
T 3m2w_A          186 VIMYILLCGYPPFY-SNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRM-----TITEFMNHPW  259 (299)
T ss_dssp             HHHHHHHHSSCSCC-C-------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSC-----CHHHHHTSHH
T ss_pred             HHHHHHHHCCCCCC-CCcchhhhHHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCC-----CHHHHhcChh
Confidence              011178899997 55433332111100 01233344    46899999999999999999999     6699999999


Q ss_pred             CCC
Q psy3184         158 FQG  160 (185)
Q Consensus       158 f~~  160 (185)
                      |+.
T Consensus       260 ~~~  262 (299)
T 3m2w_A          260 IMQ  262 (299)
T ss_dssp             HHT
T ss_pred             hcc
Confidence            965

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.53  E-value=1.6e-14  Score=115.83  Aligned_cols=129  Identities=12%  Similarity=0.135  Sum_probs=92.2

Q ss_pred             cHHHHHHHHHHHh--------hc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-----ccccccCCcccccc
Q psy3184          10 DTLQVKEMVESMH--------QA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-----ILRLLSGRPPFCVM   71 (185)
Q Consensus        10 ~~~qi~~~l~~lH--------~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-----~~~~~~gt~~y~a~   71 (185)
                      .+.||+.||.|||        +.     ||||+||+++.+.   .++|+|||.+.......     ......||+.|+| 
T Consensus       144 i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~a-  219 (342)
T 1b6c_B          144 LALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNG---TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA-  219 (342)
T ss_dssp             HHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTS---CEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCC-
T ss_pred             HHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCC---CEEEEECCCceeccccccccccccccCCcCcccCC-
Confidence            4789999999999        55     8999999998853   49999999998776543     2345689999999 


Q ss_pred             CCCcccccchhccC------cce--------------ecc----------CCCCCCCC-----ChHHHHHHHHhcCCCcc
Q psy3184          72 NDPMQTYNMIINVG------IDN--------------IFS----------RPPFCVMN-----DPMQTYNMIINVGIDKI  116 (185)
Q Consensus        72 ~~P~~~~E~~~~~~------~~~--------------l~g----------~~Pf~~~~-----~~~~~~~~i~~~~~~~~  116 (185)
                        |    |++....      ++.              ++|          ..||. ..     ........+. .....+
T Consensus       220 --P----E~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~-~~~~~~  291 (342)
T 1b6c_B          220 --P----EVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY-DLVPSDPSVEEMRKVVC-EQKLRP  291 (342)
T ss_dssp             --H----HHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTT-TTSCSSCCHHHHHHHHT-TSCCCC
T ss_pred             --H----hhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCcc-ccCcCcccHHHHHHHHH-HHHhCC
Confidence              9    7765431      111              677          78887 33     2234444444 222334


Q ss_pred             CCCC-----CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcC
Q psy3184         117 PFPK-----HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKH  155 (185)
Q Consensus       117 ~~p~-----~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~h  155 (185)
                      .+|.     ..+..+.+||.+||..||.+||     ++.++++|
T Consensus       292 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rp-----s~~~i~~~  330 (342)
T 1b6c_B          292 NIPNRWQSCEALRVMAKIMRECWYANGAARL-----TALRIKKT  330 (342)
T ss_dssp             CCCGGGGTSHHHHHHHHHHHHHCCSSGGGSC-----CHHHHHHH
T ss_pred             CCcccccchhHHHHHHHHHHHHhccChhhCC-----CHHHHHHH
Confidence            4443     2346889999999999999999     55888765

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.53  E-value=2.4e-15  Score=120.11  Aligned_cols=133  Identities=13%  Similarity=0.123  Sum_probs=91.8

Q ss_pred             ccHHHHHHHHHHHhhc--------CCCCCceEEccCCCCCeeEEcccCceeEeecC--cccccccCCccccccCCCcccc
Q psy3184           9 LDTLQVKEMVESMHQA--------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--KILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~--------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--~~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      ..+.||+.||+|||+.        ||||+||+++.+.   .++|+|||.+......  .......||+.|+|   |    
T Consensus       135 ~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~a---P----  204 (326)
T 3uim_A          135 RIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEF---EAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIA---P----  204 (326)
T ss_dssp             HHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTC---CEEECCCSSCEECCSSSSCEECCCCSCGGGCC---H----
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCC---CEEeccCccccccCcccccccccccCCcCccC---H----
Confidence            3478999999999986        7899999998853   4999999999877543  23345679999999   9    


Q ss_pred             cchhccCcce--------------eccCCCCCC----CCChHHHHHHHHhcCCC------------ccCCCCCCCHHHHH
Q psy3184          79 NMIINVGIDN--------------IFSRPPFCV----MNDPMQTYNMIINVGID------------KIPFPKHVTRTAQS  128 (185)
Q Consensus        79 E~~~~~~~~~--------------l~g~~Pf~~----~~~~~~~~~~i~~~~~~------------~~~~p~~~s~~~~~  128 (185)
                      |++....++.              ++|..||..    ..........+. ....            ...++...+.++.+
T Consensus       205 E~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  283 (326)
T 3uim_A          205 EYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVK-GLLKEKKLEALVDVDLQGNYKDEEVEQLIQ  283 (326)
T ss_dssp             HHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHT-TTTSSCCSTTSSCTTCTTSCCHHHHHHHHH
T ss_pred             HHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHH-HHhhchhhhhhcChhhccccCHHHHHHHHH
Confidence            8887655554              899999941    111001111111 0000            01122234578999


Q ss_pred             HHHHHhhcCcCcccCCCCCChhhhhcCCC
Q psy3184         129 LIKALCKESPAERLGYQRGGIVDIKKHKW  157 (185)
Q Consensus       129 li~~~l~~dp~~R~~~~~~~~~~ll~hp~  157 (185)
                      ++.+||..||.+||     ++.++++|-.
T Consensus       284 li~~cl~~dP~~Rp-----s~~ell~~L~  307 (326)
T 3uim_A          284 VALLCTQSSPMERP-----KMSEVVRMLE  307 (326)
T ss_dssp             HHHHHTCSCGGGSC-----CHHHHHHHHH
T ss_pred             HHHHHhCcCCccCC-----CHHHHHHHhc
Confidence            99999999999999     5588887643

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.53  E-value=2.6e-14  Score=114.25  Aligned_cols=131  Identities=14%  Similarity=0.181  Sum_probs=88.1

Q ss_pred             cHHHHHHHHHHHhhc-------------CCCCCceEEccCCCCCeeEEcccCceeEeecCcc-----cccccCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-------------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI-----LRLLSGRPPFCVM   71 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-------------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~-----~~~~~gt~~y~a~   71 (185)
                      .+.|++.||.|||+.             ||||+||+++.+.   .++|+|||.+........     ....+||+.|+| 
T Consensus       139 i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~---~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~a-  214 (337)
T 3mdy_A          139 LAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNG---TCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMP-  214 (337)
T ss_dssp             HHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTS---CEEECCCTTCEECC---------CCSSCSCGGGCC-
T ss_pred             HHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCC---CEEEEeCCCceeeccccccccCCCCCCccCcceeC-
Confidence            478999999999953             7899999998753   499999999976644321     235689999999 


Q ss_pred             CCCcccccchhccCcc--------e------------ecc----------CCCCCCC---CChHHHHHHHHhcCCCccCC
Q psy3184          72 NDPMQTYNMIINVGID--------N------------IFS----------RPPFCVM---NDPMQTYNMIINVGIDKIPF  118 (185)
Q Consensus        72 ~~P~~~~E~~~~~~~~--------~------------l~g----------~~Pf~~~---~~~~~~~~~i~~~~~~~~~~  118 (185)
                        |    |++....+.        .            ++|          ..||...   ...................+
T Consensus       215 --P----E~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (337)
T 3mdy_A          215 --P----EVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSF  288 (337)
T ss_dssp             --H----HHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCC
T ss_pred             --h----hhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCccc
Confidence              9    776543211        1            777          6777521   11122222222122233444


Q ss_pred             CC-----CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcC
Q psy3184         119 PK-----HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKH  155 (185)
Q Consensus       119 p~-----~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~h  155 (185)
                      |.     .++.++.+||.+||..||.+||     ++.++++|
T Consensus       289 ~~~~~~~~~~~~l~~li~~~l~~dP~~Rp-----s~~ell~~  325 (337)
T 3mdy_A          289 PNRWSSDECLRQMGKLMTECWAHNPASRL-----TALRVKKT  325 (337)
T ss_dssp             CGGGGGSHHHHHHHHHHHHHSCSSGGGSC-----CHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHhhhhChhhCC-----CHHHHHHH
Confidence            43     4567899999999999999999     55887764

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.52  E-value=6.7e-15  Score=116.96  Aligned_cols=128  Identities=14%  Similarity=0.137  Sum_probs=90.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----------ccccccCCccccccCCC
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----------ILRLLSGRPPFCVMNDP   74 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----------~~~~~~gt~~y~a~~~P   74 (185)
                      .+.||+.||.|||++     ||||+||+++.+.   .++|+|||.+.......          ......||+.|+|   |
T Consensus       139 i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a---P  212 (317)
T 2buj_A          139 LLLGICRGLEAIHAKGYAHRDLKPTNILLGDEG---QPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRA---P  212 (317)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCGGGEEECTTS---CEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCC---G
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCC---CEEEEecCcchhcccccccccccccccccccccCCcccCC---H
Confidence            478999999999998     8999999998753   49999999887553211          1124568999999   9


Q ss_pred             cccccchhccC---cce--------------eccCCCCCCCC--ChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhh
Q psy3184          75 MQTYNMIINVG---IDN--------------IFSRPPFCVMN--DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCK  135 (185)
Q Consensus        75 ~~~~E~~~~~~---~~~--------------l~g~~Pf~~~~--~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~  135 (185)
                          |++....   ++.              ++|..||. ..  ........+. . ......+..++.++.++|.+||.
T Consensus       213 ----E~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~-~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~li~~~l~  285 (317)
T 2buj_A          213 ----ELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYD-MVFQKGDSVALAVQ-N-QLSIPQSPRHSSALWQLLNSMMT  285 (317)
T ss_dssp             ----GGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTH-HHHHTTSCHHHHHH-C-C--CCCCTTSCHHHHHHHHHHTC
T ss_pred             ----hHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChh-hhhcccchhhHHhh-c-cCCCCccccCCHHHHHHHHHHhh
Confidence                8775433   222              89999996 31  1112222232 1 12333445789999999999999


Q ss_pred             cCcCcccCCCCCChhhhhcC
Q psy3184         136 ESPAERLGYQRGGIVDIKKH  155 (185)
Q Consensus       136 ~dp~~R~~~~~~~~~~ll~h  155 (185)
                      .||.+||     ++.+++++
T Consensus       286 ~dp~~Rp-----s~~~ll~~  300 (317)
T 2buj_A          286 VDPHQRP-----HIPLLLSQ  300 (317)
T ss_dssp             SSGGGSC-----CHHHHHHH
T ss_pred             cChhhCC-----CHHHHHHH
Confidence            9999999     55888875

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.52  E-value=2.6e-14  Score=114.32  Aligned_cols=127  Identities=9%  Similarity=0.066  Sum_probs=93.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc----cccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI----LRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~----~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||+|||+.     ||||+||+++.+.   .++|+|||.+........    .....++..|+|   |    |+
T Consensus       150 i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~---~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  219 (326)
T 2w1i_A          150 YTSQICKGMEYLGTKRYIHRDLATRNILVENEN---RVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYA---P----ES  219 (326)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCGGGEEEEETT---EEEECCCTTCEECCSSCSEEECSSCCSCCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHhCCEeccCCCcceEEEcCCC---cEEEecCcchhhccccccccccccCCCCceeEEC---c----hh
Confidence            367999999999998     8999999998853   499999999987754422    223467788999   9    88


Q ss_pred             hhccCcce--------------eccCCCCCCCCCh------------H----HHHHHHHhcCCCccCCCCCCCHHHHHHH
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDP------------M----QTYNMIINVGIDKIPFPKHVTRTAQSLI  130 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~------------~----~~~~~i~~~~~~~~~~p~~~s~~~~~li  130 (185)
                      +.+..++.              ++|..||. ....            .    .+...+. . ......|..++.++.++|
T Consensus       220 ~~~~~~~~~~Di~slG~il~el~tg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~li  296 (326)
T 2w1i_A          220 LTESKFSVASDVWSFGVVLYELFTYIEKSK-SPPAEFMRMIGNDKQGQMIVFHLIELLK-N-NGRLPRPDGCPDEIYMIM  296 (326)
T ss_dssp             HHHCEEEHHHHHHHHHHHHHHHHHTTCGGG-SHHHHHHHHHCTTCCTHHHHHHHHHHHH-T-TCCCCCCTTCCHHHHHHH
T ss_pred             hcCCCCCchhhHHHHHHHHHHHHhcCCCCC-CCHHHHHHhhccccchhhhHHHHHHHhh-c-CCCCCCCCcccHHHHHHH
Confidence            77655553              78888875 2210            0    1122222 1 134566778999999999


Q ss_pred             HHHhhcCcCcccCCCCCChhhhhc
Q psy3184         131 KALCKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       131 ~~~l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      .+||..||.+||     ++.++++
T Consensus       297 ~~cl~~dP~~Rp-----s~~el~~  315 (326)
T 2w1i_A          297 TECWNNNVNQRP-----SFRDLAL  315 (326)
T ss_dssp             HHHSCSSGGGSC-----CHHHHHH
T ss_pred             HHHcCCChhhCc-----CHHHHHH
Confidence            999999999999     5577664

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.49  E-value=1.4e-14  Score=114.53  Aligned_cols=127  Identities=13%  Similarity=0.084  Sum_probs=89.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||+.     ||||+||+++.+.   .++|+|||.+.......   ......||+.|+|   |    |++
T Consensus       138 i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~a---P----E~~  207 (307)
T 2nru_A          138 IAQGAANGINFLHENHHIHRDIKSANILLDEAF---TAKISDFGLARASEKFAQTVMTSRIVGTTAYMA---P----EAL  207 (307)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCGGGEEECTTC---CEEECCCTTCEECCSCSSCEECSSCCSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCC---cEEEeecccccccccccccccccccCCCcCcCC---h----HHh
Confidence            478999999999998     8999999998753   49999999998664422   2334689999999   9    776


Q ss_pred             hccCcce--------------eccCCCCCCCCChH----HHHHHHHhcCC---------CccCCCCCCCHHHHHHHHHHh
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPM----QTYNMIINVGI---------DKIPFPKHVTRTAQSLIKALC  134 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~----~~~~~i~~~~~---------~~~~~p~~~s~~~~~li~~~l  134 (185)
                      .+. ++.              ++|..||. ..+..    .....+. ...         .....+...+.++.+++.+||
T Consensus       208 ~~~-~~~~~Dv~slG~il~~l~~g~~p~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl  284 (307)
T 2nru_A          208 RGE-ITPKSDIYSFGVVLLEIITGLPAVD-EHREPQLLLDIKEEIE-DEEKTIEDYIDKKMNDADSTSVEAMYSVASQCL  284 (307)
T ss_dssp             TTE-ECTHHHHHHHHHHHHHHHHCCCSBC-TTBSSSBTTHHHHHHH-TTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHT
T ss_pred             cCC-CCccchhHHHHHHHHHHHHCCCCcc-cCcchHHHHHHHHHhh-hhhhhhhhhccccccccchHHHHHHHHHHHHHc
Confidence            543 332              89999997 43322    2222222 110         011122345678999999999


Q ss_pred             hcCcCcccCCCCCChhhhhc
Q psy3184         135 KESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       135 ~~dp~~R~~~~~~~~~~ll~  154 (185)
                      ..||.+||     ++.++++
T Consensus       285 ~~~p~~Rp-----s~~~l~~  299 (307)
T 2nru_A          285 HEKKNKRP-----DIKKVQQ  299 (307)
T ss_dssp             CSSTTTSC-----CHHHHHH
T ss_pred             CCCcccCc-----CHHHHHH
Confidence            99999999     5587765

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.43  E-value=2.9e-14  Score=115.86  Aligned_cols=120  Identities=16%  Similarity=0.168  Sum_probs=86.7

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccC--------CCCCeeEEcccCceeEeec---CcccccccCCccccccC
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEG--------EAGNDLFVSAEGEFQVIKD---GKILRLLSGRPPFCVMN   72 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~--------~~~~~i~l~d~g~~~~~~~---~~~~~~~~gt~~y~a~~   72 (185)
                      ..+.||+.||+|||++     ||||+||+++.+        .....++|+|||+++.+..   +......+||+.|+|  
T Consensus       176 ~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~a--  253 (365)
T 3e7e_A          176 SFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQC--  253 (365)
T ss_dssp             HHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCC--
T ss_pred             HHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCC--
Confidence            3588999999999997     899999999871        1112499999999976542   334556789999999  


Q ss_pred             CCcccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC-CCCCHHHHHHHHHHhhcC
Q psy3184          73 DPMQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP-KHVTRTAQSLIKALCKES  137 (185)
Q Consensus        73 ~P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p-~~~s~~~~~li~~~l~~d  137 (185)
                       |    |++.+..|+.              ++|..||. ..+....        .....++ ...++.+.+++.+||..+
T Consensus       254 -P----E~~~~~~~~~~~DiwslG~il~elltg~~pf~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~  319 (365)
T 3e7e_A          254 -V----EMLSNKPWNYQIDYFGVAATVYCMLFGTYMKV-KNEGGEC--------KPEGLFRRLPHLDMWNEFFHVMLNIP  319 (365)
T ss_dssp             -H----HHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCE-EEETTEE--------EECSCCTTCSSHHHHHHHHHHHHCCC
T ss_pred             -h----HHhcCCCCCccccHHHHHHHHHHHHhCCCccc-cCCCCce--------eechhccccCcHHHHHHHHHHHcCCC
Confidence             9    9888777665              89999996 3321100        0011111 134688999999999999


Q ss_pred             cCcccCC
Q psy3184         138 PAERLGY  144 (185)
Q Consensus       138 p~~R~~~  144 (185)
                      |.+|+..
T Consensus       320 p~~r~~~  326 (365)
T 3e7e_A          320 DCHHLPS  326 (365)
T ss_dssp             CTTCCCC
T ss_pred             CCCcchH
Confidence            9999743

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.38  E-value=7.8e-14  Score=122.29  Aligned_cols=119  Identities=16%  Similarity=0.152  Sum_probs=87.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||+|||++     ||||+||+++.+    .++|+|||.++.....   ...+||+.|+|   |    |++...
T Consensus       187 ~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~----~~kl~DFG~a~~~~~~---~~~~gt~~y~a---P----E~~~~~  252 (681)
T 2pzi_A          187 YLLEILPALSYLHSIGLVYNDLKPENIMLTEE----QLKLIDLGAVSRINSF---GYLYGTPGFQA---P----EIVRTG  252 (681)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEECSS----CEEECCCTTCEETTCC---SCCCCCTTTSC---T----THHHHC
T ss_pred             HHHHHHHHHHHHHHCCCeecccChHHeEEeCC----cEEEEecccchhcccC---CccCCCccccC---H----HHHcCC
Confidence            468999999999998     899999999874    4999999999876433   45689999999   9    776543


Q ss_pred             Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC-CCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP-KHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p-~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      . +.              ++|.+||. +.....          .....+ ...++++.+||.+||..||.+||+.     
T Consensus       253 ~-~~~sDi~slG~~l~~l~~g~~~~~-~~~~~~----------~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~-----  315 (681)
T 2pzi_A          253 P-TVATDIYTVGRTLAALTLDLPTRN-GRYVDG----------LPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTT-----  315 (681)
T ss_dssp             S-CHHHHHHHHHHHHHHHHSCCCEET-TEECSS----------CCTTCHHHHHCHHHHHHHHHHTCSSGGGSCSS-----
T ss_pred             C-CCceehhhhHHHHHHHHhCCCCCc-cccccc----------ccccccccccCHHHHHHHhhhccCChhhCCCH-----
Confidence            2 22              67777776 321100          000001 1246889999999999999999955     


Q ss_pred             hhhhcCCCCC
Q psy3184         150 VDIKKHKWFQ  159 (185)
Q Consensus       150 ~~ll~hp~f~  159 (185)
                      .+.+.|+|+.
T Consensus       316 ~~~l~~~l~~  325 (681)
T 2pzi_A          316 AEEMSAQLTG  325 (681)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888764

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.16  E-value=1.5e-11  Score=105.90  Aligned_cols=65  Identities=6%  Similarity=-0.030  Sum_probs=51.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchhc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ...||+.||+|+|++     ||||+|||++.+.   ++||+|||+++..... ....+.+||+.|||   |    |++.+
T Consensus       344 I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg---~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmA---P----E~l~g  413 (569)
T 4azs_A          344 ILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQ---HARLIDFGSIVTTPQDCSWPTNLVQSFFVFV---N----ELFAE  413 (569)
T ss_dssp             HHHHHHHHHHHHHHTTCEESCCCGGGEEECTTS---CEEECCCTTEESCC---CCSHHHHHHHHHHH---H----HHC--
T ss_pred             HHHHHHHHHHHHHHCCceeccCchHhEEECCCC---CEEEeecccCeeCCCCCccccCceechhhcc---H----HHhCC
Confidence            367999999999998     8999999998863   4999999999866443 44567899999999   9    77765


Q ss_pred             c
Q psy3184          84 V   84 (185)
Q Consensus        84 ~   84 (185)
                      .
T Consensus       414 ~  414 (569)
T 4azs_A          414 N  414 (569)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=98.96  E-value=1e-10  Score=92.11  Aligned_cols=104  Identities=6%  Similarity=-0.053  Sum_probs=65.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      ...||+.||+|||++     ||||+||+++.+.   .++|++.+                   |++   |    ......
T Consensus       134 i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g---~~kl~~~~-------------------~~~---~----~~~~~D  184 (286)
T 3uqc_A          134 AMQSLAAAADAAHRAGVALSIDHPSRVRVSIDG---DVVLAYPA-------------------TMP---D----ANPQDD  184 (286)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTS---CEEECSCC-------------------CCT---T----CCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCccCCCCcccEEEcCCC---CEEEEecc-------------------ccC---C----CCchhH
Confidence            378999999999998     7899999998753   36766333                   333   3    111111


Q ss_pred             Ccce-------eccCCCCCCCCChHHHHH---HHHhcCC-CccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          85 GIDN-------IFSRPPFCVMNDPMQTYN---MIINVGI-DKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        85 ~~~~-------l~g~~Pf~~~~~~~~~~~---~i~~~~~-~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      -|+.       ++|..||. +.+..+...   ....... ....++..+++++.+||.+||..||.+| ++
T Consensus       185 i~slG~il~elltg~~Pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~  253 (286)
T 3uqc_A          185 IRGIGASLYALLVNRWPLP-EAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SA  253 (286)
T ss_dssp             HHHHHHHHHHHHHSEECSC-CCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CH
T ss_pred             HHHHHHHHHHHHHCCCCCC-cCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CH
Confidence            1221       78999998 554332110   1110000 0112335689999999999999999999 65

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=98.63  E-value=5.4e-09  Score=89.45  Aligned_cols=63  Identities=11%  Similarity=0.180  Sum_probs=52.6

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--------ccccccCCccccccCCCc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--------ILRLLSGRPPFCVMNDPM   75 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--------~~~~~~gt~~y~a~~~P~   75 (185)
                      ....||+.||+|||++     ||||+||+++.     +++|+|||+++......        ...+++||+.|||   | 
T Consensus       435 ~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~-----~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~A---P-  505 (540)
T 3en9_A          435 DIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK-----DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKF---D-  505 (540)
T ss_dssp             HHHHHHHHHHHHHHHTTEECTTCCTTSEEESS-----SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGH---H-
T ss_pred             HHHHHHHHHHHHHHHCcCccCCCCHHHEEECC-----eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCC---H-
Confidence            4578999999999998     89999999998     39999999999875532        1246799999999   9 


Q ss_pred             ccccchhc
Q psy3184          76 QTYNMIIN   83 (185)
Q Consensus        76 ~~~E~~~~   83 (185)
                         |++..
T Consensus       506 ---Ev~~~  510 (540)
T 3en9_A          506 ---EIWER  510 (540)
T ss_dssp             ---HHHHH
T ss_pred             ---HHHHH
Confidence               77764

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=97.89  E-value=8.3e-06  Score=63.95  Aligned_cols=39  Identities=8%  Similarity=0.017  Sum_probs=34.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeE
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQV   52 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~   52 (185)
                      .+.||+.||.|||+.     ||||+||+++ +  + .++|+|||.+..
T Consensus       198 i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~--~-~vkl~DFG~a~~  241 (282)
T 1zar_A          198 VLDMILEEVAKFYHRGIVHGDLSQYNVLVS-E--E-GIWIIDFPQSVE  241 (282)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSTTSEEEE-T--T-EEEECCCTTCEE
T ss_pred             HHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-C--C-cEEEEECCCCeE
Confidence            578999999999998     8999999999 4  3 499999999863

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=97.63  E-value=5.5e-05  Score=58.29  Aligned_cols=39  Identities=15%  Similarity=0.181  Sum_probs=34.3

Q ss_pred             cHHHHHHHHHHHh-hc-----CCCCCceEEccCCCCCeeEEcccCceeEe
Q psy3184          10 DTLQVKEMVESMH-QA-----EYKADNYVITEGEAGNDLFVSAEGEFQVI   53 (185)
Q Consensus        10 ~~~qi~~~l~~lH-~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~   53 (185)
                      .+.||+.||.||| +.     ||||+||+++.     .++|+|||.+...
T Consensus       175 i~~qi~~~l~~lH~~~givHrDlkp~NILl~~-----~~~liDFG~a~~~  219 (258)
T 1zth_A          175 IFNDVVENVKRLYQEAELVHADLSEYNIMYID-----KVYFIDMGQAVTL  219 (258)
T ss_dssp             HHHHHHHHHHHHHHTSCEECSSCSTTSEEESS-----SEEECCCTTCEET
T ss_pred             HHHHHHHHHHHHHHHCCEEeCCCCHHHEEEcC-----cEEEEECcccccC
Confidence            4689999999999 65     89999999987     2899999999765

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=95.27  E-value=0.019  Score=47.18  Aligned_cols=44  Identities=7%  Similarity=0.144  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCCCceEEccCCCCC-------eeEEcccCceeEee
Q psy3184          11 TLQVKEMVESMHQA-----EYKADNYVITEGEAGN-------DLFVSAEGEFQVIK   54 (185)
Q Consensus        11 ~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~-------~i~l~d~g~~~~~~   54 (185)
                      ..||+.+|.+||++     ||||.|||++.+..+.       .+.++||+-+....
T Consensus       211 ~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~  266 (397)
T 4gyi_A          211 YADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSMD  266 (397)
T ss_dssp             HHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEETT
T ss_pred             HHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCcccCC
Confidence            57999999999998     8999999998753211       26788888765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	7e-19
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-18
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-18
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	5e-18
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	9e-18
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	5e-15
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-14
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-08
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	3e-08
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-07
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-07
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	4e-07
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	4e-07
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	5e-07
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	8e-07
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-06
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-06
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-06
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-06
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	3e-06
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	4e-06
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	5e-06
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	6e-06
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	1e-05
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-05
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-05
d1ne6a1	136	b.82.3.2 (A:109-244) Regulatory subunit of Protein	3e-05
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	5e-05
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	5e-05
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	7e-05
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-04
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	1e-04
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	4e-04
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-04
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	7e-04
d1cx4a1	136	b.82.3.2 (A:130-265) Regulatory subunit of Protein	7e-04
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	0.001
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	0.002
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	0.002
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	0.003

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (197), Expect = 7e-19
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           +  R PF   +   + + +I+    ++I FP+ ++  A+SL+  L K+ P +RLG     
Sbjct: 199 MCGRLPFYNQD-HERLFELILM---EEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSD 254

Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD 184
             ++ +H++F   +W  +  + L PP  P  +   D
Sbjct: 255 AKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVD 290

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 1e-18
 Identities = 24/90 (26%), Positives = 43/90 (47%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           +    PF V  +      +   +   + P+P+ ++  A+ LI+ L  + P +RLG     
Sbjct: 226 LTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRD 285

Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPV 178
             +IK+H +FQ  +WD L  + +  P  PV
Sbjct: 286 ADEIKEHLFFQKINWDDLAAKKVPAPFKPV 315

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.6 bits (193), Expect = 3e-18
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           +    PF   N  M+TY  I+N    ++ FP       + L+  L     ++RLG  + G
Sbjct: 195 LAGYTPFYDSN-TMKTYEKILN---AELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNG 250

Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
             D+K H WF+   W+ L ++ +  P  P
Sbjct: 251 TEDVKNHPWFKEVVWEKLLSRNIETPYEP 279

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.9 bits (191), Expect = 5e-18
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
               PPF     P+Q Y  I++    K+ FP H +   + L++ L +    +R G  + G
Sbjct: 232 AAGYPPFFADQ-PIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNG 287

Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           + DIK HKWF   DW  +  + +  P IP
Sbjct: 288 VNDIKNHKWFATTDWIAIYQRKVEAPFIP 316

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.5 bits (190), Expect = 9e-18
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 1/96 (1%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           +    PF   +     + +        +  P   +   +SL++ L +     RLG    G
Sbjct: 200 LRGHSPFR-QHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRG 258

Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD 184
             ++K+  +F+  DW  +  Q   PP+IP    +  
Sbjct: 259 AQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVNA 294

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 5e-15
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           +  + PF   +   + ++ I     D   +P+ + + A+ L+  L    P +RLG +   
Sbjct: 197 LIGQSPFHGQD-EEELFHSIRM---DNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRG-- 250

Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
             DI++H  F+  +W+ L  + + PP  P
Sbjct: 251 --DIRQHPLFREINWEELERKEIDPPFRP 277

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (164), Expect = 2e-14
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY-QRG 147
           +   PPF   N     +  II     +  FP+     A+ L++ L      +RLG  +  
Sbjct: 204 VAGLPPFRAGN-EYLIFQKIIK---LEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEME 259

Query: 148 GIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
           G   +K H +F+   W+ L  Q  TPP + 
Sbjct: 260 GYGPLKAHPFFESVTWENLHQQ--TPPKLT 287

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           +    PF          N+       +  +  + +  A+  I+ L  + P +R+  Q   
Sbjct: 210 LSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQ--- 266

Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPP 174
             D  +H W +  D     +   + P
Sbjct: 267 --DSLQHPWIKPKDTQQALSSAWSHP 290

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 3e-08
 Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           I   PP+   N P++   +I   G  ++  P+ ++   +  +         +R   +   
Sbjct: 210 IEGEPPYLNEN-PLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAK--- 265

Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
             ++ +H++ +          +LTP I  
Sbjct: 266 --ELLQHQFLK----IAKPLSSLTPLIAA 288

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 16/111 (14%), Positives = 30/111 (27%), Gaps = 12/111 (10%)

Query: 61  LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKI---- 116
           ++  + PF   +D       I  V               +    +N I+     K     
Sbjct: 223 MIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERF 282

Query: 117 ---PFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD 164
                   V+  A   +  L +     RL  +     +  +H +F     D
Sbjct: 283 VHSENQHLVSPEALDFLDKLLRYDHQSRLTAR-----EAMEHPYFYTVVKD 328

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
             S  P+    +  Q Y  + + G+    F K      + +I+   +++  ER       
Sbjct: 206 ATSEYPYSECQNAAQIYRRVTS-GVKPASFDKVAIPEVKEIIEGCIRQNKDERY-----S 259

Query: 149 IVDIKKHKWFQ 159
           I D+  H +FQ
Sbjct: 260 IKDLLNHAFFQ 270

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           +  +PPF   N   +TY  I  V   +  FP  VT  A+ LI  L K +P++R   +   
Sbjct: 198 LVGKPPFE-ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLKHNPSQRPMLR--- 250

Query: 149 IVDIKKHKWFQG 160
             ++ +H W   
Sbjct: 251 --EVLEHPWITA 260

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 46.6 bits (110), Expect = 4e-07
 Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 5/92 (5%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
             PF   ND     N+              ++   +  I+ L    P  R+         
Sbjct: 222 LSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIH-----Q 276

Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIPVASILR 183
             +H W    +  G  +Q  +     +   ++
Sbjct: 277 ALEHPWLTPGNAPGRDSQIPSSRYTKIRDSIK 308

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 5e-07
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 6/69 (8%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
            PP   +N PM+    I       +  P   +   +  +K   +++   R          
Sbjct: 212 EPPHHELN-PMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTS-----Q 265

Query: 152 IKKHKWFQG 160
           + +H +   
Sbjct: 266 LLQHPFVTV 274

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.8 bits (108), Expect = 8e-07
 Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 22/179 (12%)

Query: 9   LDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPF 68
           LD ++    +  +H+     +    +  E    + +S  G  ++   G +L    G P +
Sbjct: 117 LDAVKYLHDLGIVHRDLKPENLLYYSLDEDSK-IMISDFGLSKMEDPGSVLSTACGTPGY 175

Query: 69  CVMNDPMQTYNMIINVGIDNIFS-----------RPPFCVMNDPMQTYNMIINVGIDKIP 117
                P        +  +D  +S            PPF   ND      ++        P
Sbjct: 176 V---APEVLAQKPYSKAVD-CWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSP 231

Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW-DGLRNQTLTPPI 175
           +   ++ +A+  I+ L ++ P +R   +        +H W  G    D   +Q+++  I
Sbjct: 232 YWDDISDSAKDFIRHLMEKDPEKRFTCE-----QALQHPWIAGDTALDKNIHQSVSEQI 285

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 9/122 (7%)

Query: 65  RPPFCVMNDPMQTYNMIINVGI---DNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKH 121
             P  V  +P+  Y  +  +G+     +    PF   +D     N+              
Sbjct: 195 AAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSS 254

Query: 122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASI 181
           V+  A+  IK L ++ P +RL        D  +H W +G D   L ++  +     +   
Sbjct: 255 VSPEAKDFIKNLLQKEPRKRLTVH-----DALEHPWLKG-DHSNLTSRIPSSRYNKIRQK 308

Query: 182 LR 183
           ++
Sbjct: 309 IK 310

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 9/106 (8%)

Query: 58  ILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIP 117
              +   +P F   +D  Q   ++  +G+      P     +  +               
Sbjct: 205 FAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWP----RDVALPRQAFHSKSAQPIEK 260

Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
           F   +    + L+      +PA+R+            H +FQ  + 
Sbjct: 261 FVTDIDELGKDLLLKCLTFNPAKRISAY-----SALSHPYFQDLER 301

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 10/106 (9%), Positives = 30/106 (28%), Gaps = 5/106 (4%)

Query: 58  ILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIP 117
           +  +++G+  F   +   Q   ++   G                     +      D   
Sbjct: 209 MAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFAS 268

Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
              + +  A +L++ +      +R+        +   H +F+    
Sbjct: 269 ILTNASPLAVNLLEKMLVLDAEQRVTAG-----EALAHPYFESLHD 309

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 12/104 (11%), Positives = 34/104 (32%), Gaps = 5/104 (4%)

Query: 58  ILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIP 117
           +  +LS RP F   +   Q  +++  +G  +         +       ++     +    
Sbjct: 203 LAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNR 262

Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 161
              +    A  L+  +   +P +R+      +     H + + +
Sbjct: 263 LFPNADSKALDLLDKMLTFNPHKRI-----EVEQALAHPYLEQY 301

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 61  LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
           +++G P F  +++  Q   +   +G  N  + P   V   P    N  +   +    F K
Sbjct: 194 MVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPN--VTELPKYDPNFTVYEPLPWESFLK 251

Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 159
            +  +   L+  + K  P +R+  +        +H +F+
Sbjct: 252 GLDESGIDLLSKMLKLDPNQRITAK-----QALEHAYFK 285

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 58  ILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIP 117
              +++ R  F   ++  Q + +   +G  +    P    M D   ++         K+ 
Sbjct: 193 FAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKV- 251

Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
               +    +SL+  +    P +R+  +         H +FQ 
Sbjct: 252 -VPPLDEDGRSLLSQMLHYDPNKRISAK-----AALAHPFFQD 288

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 5e-06
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           +    P+   +D  Q Y+         +   K +     +L+  +  E+P+ R+      
Sbjct: 200 LAGELPWDQPSDSCQEYSDWKE-KKTYLNPWKKIDSAPLALLHKILVENPSARITIP--- 255

Query: 149 IVDIKKHKWFQ 159
             DIKK +W+ 
Sbjct: 256 --DIKKDRWYN 264

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 6e-06
 Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 20/121 (16%)

Query: 58  ILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNM---------- 107
           ++ +  GR P    +           V  D   + P       P+ +Y M          
Sbjct: 193 LVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFE 252

Query: 108 ----IINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDW 163
               I+N    K+P     +   Q  +     ++PAER   +      +  H + +  D 
Sbjct: 253 LLDYIVNEPPPKLP-SGVFSLEFQDFVNKCLIKNPAERADLK-----QLMVHAFIKRSDA 306

Query: 164 D 164
           +
Sbjct: 307 E 307

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 6/101 (5%)

Query: 61  LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
           L +   P    ND       I  +       + P  +   P      +       +    
Sbjct: 195 LANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWP-SMTKLPDYKPYPMYPATTSLVNVVP 253

Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 161
            +  T + L++ L K +P +R+  +     +  +H +F  F
Sbjct: 254 KLNATGRDLLQNLLKCNPVQRISAE-----EALQHPYFSDF 289

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 7/110 (6%)

Query: 58  ILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIP 117
           +  LL G+P F   +  +     II V       +      N     +  I      K+ 
Sbjct: 213 LAELLLGQPIFPGDS-GVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVF 271

Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLR 167
            P      A +L   L + +P  RL        +   H +F       ++
Sbjct: 272 RP-RTPPEAIALCSRLLEYTPTARLTPL-----EACAHSFFDELRDPNVK 315

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 7/74 (9%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGID-KIPFPKHVTRTAQSLIKALCKESPAERLGYQRG 147
           +   PPF      M    MI++       P     + T + L+       P +R   +  
Sbjct: 209 LAGSPPFWHRK-QMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAE-- 265

Query: 148 GIVDIKKHKWFQGF 161
              +   H +FQ +
Sbjct: 266 ---EALAHPFFQQY 276

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 2  DNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQ 51
           N    +LD  +  ++ ++M    + A   VI +G+ G++ +V  +GE  
Sbjct: 24 KNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD 73

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 5e-05
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 15/72 (20%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
           +    PF    + ++           ++ F + V+   Q LI+      P++R  ++   
Sbjct: 204 VCGDIPFEHDEEIIR----------GQVFFRQRVSSECQHLIRWCLALRPSDRPTFE--- 250

Query: 149 IVDIKKHKWFQG 160
             +I+ H W Q 
Sbjct: 251 --EIQNHPWMQD 260

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 5e-05
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQRG 147
            PPF   +    +  M   + + +  FP      V+   + LI+ L K  P +R+     
Sbjct: 210 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTIT-- 267

Query: 148 GIVDIKKHKWFQ 159
              +   H W  
Sbjct: 268 ---EFMNHPWIM 276

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 7e-05
 Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 7/72 (9%)

Query: 89  IFSRPPFCVMNDPMQTYNMIINVGID-KIPFPKHVTRTAQSLIKALCKESPAERLGYQRG 147
           +    PF       Q    I+N          K ++  A   +  L  +    R+     
Sbjct: 197 LSGINPFLAET-NQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTAS-- 253

Query: 148 GIVDIKKHKWFQ 159
              +  +H W +
Sbjct: 254 ---EALQHPWLK 262

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 8/102 (7%)

Query: 58  ILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIP 117
           +  LL   P     +D  Q   +   +G       P  C + D +   +     GI    
Sbjct: 191 LAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFP---GIPLHH 247

Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 159
                      LI+ L   +P  R+           K K+F 
Sbjct: 248 IFSAAGDDLLDLIQGLFLFNPCARITAT-----QALKMKYFS 284

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 13/104 (12%), Positives = 30/104 (28%), Gaps = 5/104 (4%)

Query: 58  ILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIP 117
           +  LL+GR  F   +   Q   ++  VG             +      ++     ++   
Sbjct: 209 MAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFAN 268

Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 161
                   A  L++ +      +R+            H +F  +
Sbjct: 269 VFIGANPLAVDLLEKMLVLDSDKRITAA-----QALAHAYFAQY 307

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 26/144 (18%)

Query: 58  ILRLLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVM-----------------ND 100
           I  L++G   F        T +      I  +    P  ++                 N 
Sbjct: 219 IFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNI 278

Query: 101 PMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
               +  + +V  +K  F K   +     +  + +  P +R          +  H W + 
Sbjct: 279 SKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA-----DAGGLVNHPWLK- 332

Query: 161 FDWDGLRNQTLTPPIIPVASILRD 184
              D L  + +  P   +     D
Sbjct: 333 ---DTLGMEEIRVPDRELYGSGSD 353

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 13/100 (13%)

Query: 66  PPFCVMNDPMQTYNMIINVG------IDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFP 119
            P  ++      Y+  ++V       I+    +PP   MN  M     I           
Sbjct: 179 APEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN-AMSALYHIAQ-NESPALQS 236

Query: 120 KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 159
            H +   ++ + +  ++ P +R   +      + KH++  
Sbjct: 237 GHWSEYFRNFVDSCLQKIPQDRPTSE-----VLLKHRFVL 271

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 7e-04
 Identities = 8/73 (10%), Positives = 23/73 (31%), Gaps = 5/73 (6%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
           + P+  M    +   M+     +++  P    R    L+          R G+    +  
Sbjct: 208 QKPYRGMK-GSEVTAMLEKG--ERMGCPAGCPREMYDLMNLCWTYDVENRPGFAA--VEL 262

Query: 152 IKKHKWFQGFDWD 164
             ++ ++   +  
Sbjct: 263 RLRNYYYDVVNEG 275

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.9 bits (82), Expect = 7e-04
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 2  DNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQ 51
          D    KNLD  Q+ +++++M +   K   +VI +G+ G++ +V   G F 
Sbjct: 20 DILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD 69

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 8/101 (7%)

Query: 61  LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVG--IDKIPF 118
           + +  P     N       +I  +         P     +  +   ++      +     
Sbjct: 215 MWTRSPIMQ-GNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLK 273

Query: 119 PKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 159
                  A  LI  L    PA+R+        D   H +F 
Sbjct: 274 AYVRDPYALDLIDKLLVLDPAQRIDSD-----DALNHDFFW 309

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 8/98 (8%), Positives = 23/98 (23%), Gaps = 14/98 (14%)

Query: 84  VGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFP-----KHVTRTAQSLIKALCKESP 138
             +                        +   K+  P     K       + +        
Sbjct: 201 YVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRF 260

Query: 139 AERLGYQRGGIVDIKKHKWFQ-------GFDWDGLRNQ 169
            ++  Y    +  + ++ + +        FDW+ L+  
Sbjct: 261 DDKPDYSY--LRQLFRNLFHRQGFSYDYVFDWNMLKFG 296

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 8/66 (12%)

Query: 92  RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
            PPF   +   +    I      +IP     +     +I  +       R   +     +
Sbjct: 211 MPPFTAFS-QKELAGKIREGKFRRIP--YRYSDELNEIITRMLNLKDYHRPSVE-----E 262

Query: 152 IKKHKW 157
           I ++  
Sbjct: 263 ILENPL 268

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 18/129 (13%), Positives = 32/129 (24%), Gaps = 20/129 (15%)

Query: 61  LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGID------ 114
           ++  +  F    D +  +N +I                       N     G+       
Sbjct: 211 MVRHKILFP-GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFP 269

Query: 115 ------KIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRN 168
                      K     A+ L+  +    PA+R+        D  +H +     W     
Sbjct: 270 DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVD-----DALQHPYIN--VWYDPAE 322

Query: 169 QTLTPPIIP 177
               PP I 
Sbjct: 323 VEAPPPQIY 331

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.98
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.97
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.97
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.96
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.96
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.96
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.94
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.93
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.93
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.93
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.92
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.92
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.92
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.92
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.92
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.91
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.9
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.9
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.9
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.89
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.89
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.89
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.89
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.88
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.87
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.87
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.86
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.86
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.85
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.85
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.85
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.84
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.84
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.83
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.83
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.83
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.83
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.83
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.83
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.82
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.82
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.82
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.81
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.81
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.81
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.81
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.8
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.8
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.8
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.79
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.79
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.79
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.78
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.75
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.74
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.74
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.67
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.56
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	98.03

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-33  Score=224.52  Aligned_cols=165  Identities=21%  Similarity=0.473  Sum_probs=145.7

Q ss_pred             hhcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCccccc
Q psy3184           6 LKNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         6 ~~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      ..+..+.||+.||+|||++     ||||+||+++.+  + .++|+|||+++.... .....+.+||+.|||   |    |
T Consensus       106 ~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~--g-~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~a---P----E  175 (337)
T d1o6la_         106 RARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKD--G-HIKITDFGLCKEGISDGATMKTFCGTPEYLA---P----E  175 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTT--S-CEEECCCTTCBCSCCTTCCBCCCEECGGGCC---G----G
T ss_pred             HHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCC--C-CEEEeecccccccccCCcccccceeCHHHhh---h----h
Confidence            3556689999999999998     899999999886  3 399999999986543 455667899999999   9    9


Q ss_pred             chhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          80 MIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        80 ~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      ++.+.+|+.              ++|.+||. +.+..+++..+. .  ..+.+|..+|+++++||++||.+||.+|+++.
T Consensus       176 ~~~~~~y~~~~DiwSlGvilyeml~G~~pf~-~~~~~~~~~~i~-~--~~~~~p~~~s~~~~dli~~~L~~dP~~R~~~~  251 (337)
T d1o6la_         176 VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFY-NQDHERLFELIL-M--EEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGG  251 (337)
T ss_dssp             GGSSSCBCTTHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-H--CCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCS
T ss_pred             hccCCCCChhhcccchhhHHHHHHHCCCCCC-CcCHHHHHHHHh-c--CCCCCCccCCHHHHHHHHhhccCCchhhcccc
Confidence            998888876              99999999 999999999988 3  47889999999999999999999999999876


Q ss_pred             CCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      ..+++++++||||++++|..+..+++.|||.|.+.++.|
T Consensus       252 ~~~~~eil~Hp~f~~i~~~~l~~~~~~~p~~P~~~~~~~  290 (337)
T d1o6la_         252 PSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVD  290 (337)
T ss_dssp             TTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCSSTTC
T ss_pred             cccHHHHHcCcccccCCHHHHHhCCCCCCCCCCCCChhh
Confidence            667899999999999999999999999999998876654

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=3.6e-32  Score=220.10  Aligned_cols=162  Identities=28%  Similarity=0.518  Sum_probs=143.1

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+..+.||+.||+|||++     ||||+||+++.+  + .++|+|||+++.+..  ...+.+||+.|||   |    |++
T Consensus       143 ~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~--g-~ikL~DFG~a~~~~~--~~~~~~Gt~~Y~A---P----E~~  210 (350)
T d1rdqe_         143 ARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQ--G-YIQVTDFGFAKRVKG--RTWTLCGTPEALA---P----EII  210 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTT--S-CEEECCCTTCEECSS--CBCCCEECGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCC--C-CEEeeeceeeeeccc--ccccccCccccCC---H----HHH
Confidence            345689999999999998     899999999885  3 499999999987643  3456789999999   9    999


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .+.+|+.              ++|.+||. +.+...++..|. .  ..+.+|..+|+++.+||++||.+||.+|+...+.
T Consensus       211 ~~~~~~~~~DiwSlGvilyemltG~~Pf~-~~~~~~~~~~i~-~--~~~~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~  286 (350)
T d1rdqe_         211 LSKGYNKAVDWWALGVLIYEMAAGYPPFF-ADQPIQIYEKIV-S--GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKN  286 (350)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-H--CCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTT
T ss_pred             cCCCCCccccccchhHHHHHHHhCCCCCC-CcCHHHHHHHHh-c--CCCCCCccCCHHHHHHHHHHhhhCHHhccccccc
Confidence            8887776              99999999 999999999988 3  3678888999999999999999999999987788


Q ss_pred             ChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         148 GIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       148 ~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      +++++++||||++++|..+..+.+.|||+|.+..+.|
T Consensus       287 t~~ell~Hp~f~~~~~~~~~~~~~~~p~~p~~~~~~d  323 (350)
T d1rdqe_         287 GVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGD  323 (350)
T ss_dssp             TTHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCSTTC
T ss_pred             cHHHHHcCccccCCCHHHHHhcCCCcCccCCCCCcch
Confidence            9999999999999999999999999999999876654

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-31  Score=214.03  Aligned_cols=158  Identities=22%  Similarity=0.475  Sum_probs=139.2

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +..+.||+.||+|||++     ||||+||+++.+  + +++|+|||+++....  ...+.+||+.|||   |    |++.
T Consensus       107 ~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~--g-~vkL~DFG~a~~~~~--~~~~~~Gt~~Y~A---P----E~l~  174 (316)
T d1fota_         107 KFYAAEVCLALEYLHSKDIIYRDLKPENILLDKN--G-HIKITDFGFAKYVPD--VTYTLCGTPDYIA---P----EVVS  174 (316)
T ss_dssp             HHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTT--S-CEEECCCSSCEECSS--CBCCCCSCTTTCC---H----HHHT
T ss_pred             HHHHHHHHHhhhhhccCcEEccccCchheeEcCC--C-CEEEecCccceEecc--ccccccCcccccC---H----HHHc
Confidence            45678999999999998     899999999885  3 499999999987643  3456899999999   9    9988


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..|+.              ++|..||. +.+..++...+. .+  ...+|..+|++++++|.+||.+||.+|++..+.+
T Consensus       175 ~~~y~~~~DiwSlGvilyemltG~~Pf~-~~~~~~~~~~i~-~~--~~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t  250 (316)
T d1fota_         175 TKPYNKSIDWWSFGILIYEMLAGYTPFY-DSNTMKTYEKIL-NA--ELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNG  250 (316)
T ss_dssp             TCCBCTTHHHHHHHHHHHHHHHSSCTTC-CSSHHHHHHHHH-HC--CCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTT
T ss_pred             CCCCCchhhccccchhHHHHHhCCCCCC-CcCHHHHHHHHH-cC--CCCCCCCCCHHHHHHHHHHhhhCHHhccccchhh
Confidence            877776              99999999 999999999988 33  6788899999999999999999999999888889


Q ss_pred             hhhhhcCCCCCCCChhhhhcccCCCCccCCCCC
Q psy3184         149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASI  181 (185)
Q Consensus       149 ~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~  181 (185)
                      ++++++||||++++|+.+..+.+.+||.|.+..
T Consensus       251 ~~~il~Hp~f~~i~~~~l~~~~~~~p~~p~~~~  283 (316)
T d1fota_         251 TEDVKNHPWFKEVVWEKLLSRNIETPYEPPIQQ  283 (316)
T ss_dssp             THHHHTSGGGSSCCHHHHHTTCSCCSCCCCC--
T ss_pred             HHHHHcCcccccCCHHHHHhCCCCcCCCCCcCC
Confidence            999999999999999999999999999987654

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-30  Score=206.81  Aligned_cols=159  Identities=20%  Similarity=0.437  Sum_probs=129.7

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+..+.||+.||+|||++     ||||+||+++++.   +++|+|||.++..... ......+||+.|+|   |    |+
T Consensus       105 ~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~---~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~a---P----E~  174 (320)
T d1xjda_         105 ATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDG---HIKIADFGMCKENMLGDAKTNTFCGTPDYIA---P----EI  174 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS---CEEECCCTTCBCCCCTTCCBCCCCSCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCC---ceeccccchhhhcccccccccccCCCCCcCC---H----HH
Confidence            455689999999999998     8999999999853   4999999999866443 34455789999999   9    99


Q ss_pred             hhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          81 IINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        81 ~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      +.+..|+.              ++|..||. +.+..+++..+. .  ..+.+|..+|+++++||.+||.+||.+||+   
T Consensus       175 ~~~~~~~~~~DiwSlGvilyemltG~~PF~-~~~~~~~~~~i~-~--~~~~~p~~~s~~~~dli~~~L~~dP~~R~s---  247 (320)
T d1xjda_         175 LLGQKYNHSVDWWSFGVLLYEMLIGQSPFH-GQDEEELFHSIR-M--DNPFYPRWLEKEAKDLLVKLFVREPEKRLG---  247 (320)
T ss_dssp             HTTCCBCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-H--CCCCCCTTSCHHHHHHHHHHSCSSGGGSBT---
T ss_pred             HcCCCCCchhhhhhhhHHHHHHHhCCCCCC-CCCHHHHHHHHH-c--CCCCCCccCCHHHHHHHHHhcccCCCCCcC---
Confidence            98887776              89999999 999999999988 3  478889999999999999999999999994   


Q ss_pred             CChh-hhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         147 GGIV-DIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       147 ~~~~-~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                        +. ++++||||++++|..+..+++.||+.|.+.++.|
T Consensus       248 --~~~~l~~hpff~~~~~~~l~~~~~~pp~~p~~~~~~d  284 (320)
T d1xjda_         248 --VRGDIRQHPLFREINWEELERKEIDPPFRPKVKSPFD  284 (320)
T ss_dssp             --TBSCGGGSGGGTTCCHHHHHTTCSCC-----------
T ss_pred             --HHHHHHhCchhccCCHHHHHhcCCCCCCCCCCCCccc
Confidence              45 7999999999999999999999999998887654

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=5.1e-30  Score=208.33  Aligned_cols=159  Identities=20%  Similarity=0.346  Sum_probs=131.0

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.+... .....+||+.|||   |    |++.
T Consensus       110 ~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g---~iKl~DFGla~~~~~~-~~~~~~GT~~y~A---P----E~~~  178 (364)
T d1omwa3         110 RFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHG---HVRISDLGLACDFSKK-KPHASVGTHGYMA---P----EVLQ  178 (364)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSS---CEEECCCTTCEECSSS-CCCSCCSCGGGCC---H----HHHS
T ss_pred             HHHHHHHHHHHHHHHHCCccceeeccceeEEcCCC---cEEEeeeceeeecCCC-cccccccccccch---h----HHhh
Confidence            44578999999999998     8999999998853   3999999999876543 3456789999999   9    8876


Q ss_pred             c-cCcce--------------eccCCCCCCCCChH---HHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 N-VGIDN--------------IFSRPPFCVMNDPM---QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 ~-~~~~~--------------l~g~~Pf~~~~~~~---~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      . ..|+.              ++|..||. +.+..   .+...+.   ...+.+|..+|+++++||.+||..||.+||++
T Consensus       179 ~~~~~~~~~DiwSlGvilyemltG~~Pf~-~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~  254 (364)
T d1omwa3         179 KGVAYDSSADWFSLGCMLFKLLRGHSPFR-QHKTKDKHEIDRMTL---TMAVELPDSFSPELRSLLEGLLQRDVNRRLGC  254 (364)
T ss_dssp             TTCCCCTHHHHHHHHHHHHHHHHSSCSSC-SSCSSCHHHHHHHSS---SCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTT
T ss_pred             cCCCCCcccchhHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHhcc---cCCCCCCCCCCHHHHHHHHHHcccCHHHhCCC
Confidence            4 45665              89999998 54433   3333333   35677888999999999999999999999987


Q ss_pred             CCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASI  181 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~  181 (185)
                      ....++++++||||++++|..+..+.+.||++|....
T Consensus       255 ~~~~a~eil~Hp~f~~i~~~~~~~~~~~~p~~p~~~~  291 (364)
T d1omwa3         255 LGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGE  291 (364)
T ss_dssp             SSSTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCC-
T ss_pred             cccCHHHHHcCccccCCCHHHHhcCCCCcCcCCCCCC
Confidence            7777999999999999999999999999999986553

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.4e-30  Score=201.05  Aligned_cols=155  Identities=21%  Similarity=0.425  Sum_probs=125.4

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      .+..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.+...   ....+.+||+.|||   |    
T Consensus       110 ~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~---~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~A---P----  179 (288)
T d1uu3a_         110 TRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDM---HIQITDFGTAKVLSPESKQARANSFVGTAQYVS---P----  179 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS---CEEECCCTTCEECC----------CCCCGGGCC---H----
T ss_pred             HHHHHHHHHHHHHhhccccEEcCcCCccccccCCCc---eEEecccccceecccCCcccccccccCCccccC---c----
Confidence            345688999999999998     8999999999863   3999999999877542   23456789999999   9    


Q ss_pred             cchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          79 NMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        79 E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      |++.+..|+.              ++|.+||. +.+..+++.+|. .  ..+.+|..+|+++++||++||..||.+||++
T Consensus       180 E~~~~~~~~~~~DiwSlGvilyell~g~~Pf~-~~~~~~~~~~i~-~--~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~  255 (288)
T d1uu3a_         180 ELLTEKSACKSSDLWALGCIIYQLVAGLPPFR-AGNEYLIFQKII-K--LEYDFPEKFFPKARDLVEKLLVLDATKRLGC  255 (288)
T ss_dssp             HHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-T--TCCCCCTTCCHHHHHHHHTTSCSSGGGSTTS
T ss_pred             eeeccCCCCcccceehhhHHHHHHhhCCCCCC-CcCHHHHHHHHH-c--CCCCCCccCCHHHHHHHHHHccCCHhHCcCH
Confidence            9998887775              99999999 899999999998 3  4788999999999999999999999999965


Q ss_pred             CC-CChhhhhcCCCCCCCChhhhhcccCCCCccC
Q psy3184         145 QR-GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP  177 (185)
Q Consensus       145 ~~-~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p  177 (185)
                      .+ .....+++||||++++|+.+..+  .||-+|
T Consensus       256 ~e~~~~~~i~~Hpff~~i~w~~l~~~--~pP~l~  287 (288)
T d1uu3a_         256 EEMEGYGPLKAHPFFESVTWENLHQQ--TPPKLT  287 (288)
T ss_dssp             GGGTCHHHHHTSGGGTTCCCTTGGGS--CCCCCC
T ss_pred             HHHcCCHHHHcCCccCCCCHHHhhcC--CCCCCC
Confidence            11 12233789999999999999876  455444

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-29  Score=200.15  Aligned_cols=164  Identities=20%  Similarity=0.370  Sum_probs=134.0

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--cccccccCCccccccCCCccccc
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--KILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--~~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      ......||+.||+|||++     ||||+||+++.+.   .++|+|||+++.+...  ....+..|++.|++   |    |
T Consensus       131 ~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~---~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~---p----e  200 (322)
T d1vzoa_         131 VQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNG---HVVLTDFGLSKEFVADETERAYDFCGTIEYMA---P----D  200 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS---CEEESCSSEEEECCGGGGGGGCGGGSCCTTCC---H----H
T ss_pred             HHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCC---CEEEeeccchhhhcccccccccccccccccch---h----H
Confidence            344578999999999997     8999999999863   4999999999876443  33456789999999   9    8


Q ss_pred             chhccC--cce--------------eccCCCCCCCCChHH----HHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcC
Q psy3184          80 MIINVG--IDN--------------IFSRPPFCVMNDPMQ----TYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        80 ~~~~~~--~~~--------------l~g~~Pf~~~~~~~~----~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~  139 (185)
                      ++....  |+.              ++|..||. +.+...    +.....   ...+.+|..+|+++.+||++||..||.
T Consensus       201 ~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~-~~~~~~~~~~i~~~~~---~~~~~~~~~~s~~~~~li~~~l~~dP~  276 (322)
T d1vzoa_         201 IVRGGDSGHDKAVDWWSLGVLMYELLTGASPFT-VDGEKNSQAEISRRIL---KSEPPYPQEMSALAKDLIQRLLMKDPK  276 (322)
T ss_dssp             HHTTCC---CTHHHHHHHHHHHHHHHHSSCTTS-CTTSCCCHHHHHHHHH---HCCCCCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             HhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHhcc---cCCCCCcccCCHHHHHHHHHHcccCHH
Confidence            876533  332              99999998 554433    333333   236677888999999999999999999


Q ss_pred             cccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCCCCCC
Q psy3184         140 ERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVASILRD  184 (185)
Q Consensus       140 ~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~~~~~  184 (185)
                      +||++...+++++++||||++++|+.+..+++++||+|.+.++.|
T Consensus       277 ~R~s~~~~t~~eil~Hpff~~i~~~~l~~~~~~~p~~p~~~~~~~  321 (322)
T d1vzoa_         277 KRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIRDELD  321 (322)
T ss_dssp             GSTTSSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCCCCCC-CC
T ss_pred             HcCCCCcccHHHHHcCHhhcCCCHHHHHhCCCCcCCCCCCCCCCC
Confidence            999887778999999999999999999999999999999999877

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-26  Score=182.20  Aligned_cols=151  Identities=18%  Similarity=0.266  Sum_probs=117.7

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCC-CCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEA-GNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~-~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.. ...++++|||++.....+....+.+||+.|||   |    |++
T Consensus       116 ~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~A---P----E~~  188 (293)
T d1jksa_         116 TEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVA---P----EIV  188 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBCSCCCCCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcCCCccccccCCCCcccC---H----HHH
Confidence            44578999999999998     89999999987532 22499999999998877777778899999999   9    988


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                      .+..|+.              ++|..||. +.+..+++..+. .+  ...++    ..+|.++++||++||..||.+|| 
T Consensus       189 ~~~~~~~~~DiwSlGvilyell~g~~Pf~-~~~~~~~~~~i~-~~--~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~-  263 (293)
T d1jksa_         189 NYEPLGLEADMWSIGVITYILLSGASPFL-GDTKQETLANVS-AV--NYEFEDEYFSNTSALAKDFIRRLLVKDPKKRM-  263 (293)
T ss_dssp             TTCCBCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-TT--CCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSC-
T ss_pred             cCCCCCCcccchhhhHHHHHHHcCCCCCC-CCCHHHHHHHHH-hc--CCCCCchhcCCCCHHHHHHHHHHccCChhHCc-
Confidence            8776765              89999999 999999998888 33  44444    57899999999999999999999 


Q ss_pred             CCCCChhhhhcCCCCCCCChhhhhcccCCCC
Q psy3184         144 YQRGGIVDIKKHKWFQGFDWDGLRNQTLTPP  174 (185)
Q Consensus       144 ~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p  174 (185)
                          +++++++||||++.+|+........+|
T Consensus       264 ----s~~eil~hp~~~~~~~~~~l~~~~~~P  290 (293)
T d1jksa_         264 ----TIQDSLQHPWIKPKDTQQALSSAWSHP  290 (293)
T ss_dssp             ----CHHHHHHSTTTCC-------------C
T ss_pred             ----CHHHHhcCcccCCCChhHhhccCCCCc
Confidence                669999999999999998766655443

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-26  Score=182.05  Aligned_cols=137  Identities=15%  Similarity=0.281  Sum_probs=115.2

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      +..+.||+.||+|||++     ||||+||+++.+  + +++|+|||+++.+... ......+||+.|||   |    |++
T Consensus       119 ~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~--~-~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~a---P----E~~  188 (293)
T d1yhwa1         119 AAVCRECLQALEFLHSNQVIHRDIKSDNILLGMD--G-SVKLTDFGFCAQITPEQSKRSTMVGTPYWMA---P----EVV  188 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTT--C-CEEECCCTTCEECCSTTCCBCCCCSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCC--C-cEeeccchhheeeccccccccccccCCCccC---h----hhh
Confidence            34578999999999998     899999999885  3 4999999999877543 34566789999999   9    998


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .+..|+.              ++|.+||. +.+..+....+...+...+..|..+|+++++||.+||..||.+||     
T Consensus       189 ~~~~~~~~~DiwSlGvilyemltG~~Pf~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~-----  262 (293)
T d1yhwa1         189 TRKAYGPKVDIWSLGIMAIEMIEGEPPYL-NENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRG-----  262 (293)
T ss_dssp             SSSCBCTHHHHHHHHHHHHHHHHSSCTTT-TSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSC-----
T ss_pred             cCCCCCchhceehHhHHHHHHhhCCCCCC-CCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCChhHCc-----
Confidence            8877775              99999999 877777766666444345666788999999999999999999999     


Q ss_pred             ChhhhhcCCCCCC
Q psy3184         148 GIVDIKKHKWFQG  160 (185)
Q Consensus       148 ~~~~ll~hp~f~~  160 (185)
                      +++++++||||+.
T Consensus       263 s~~eil~Hp~~~~  275 (293)
T d1yhwa1         263 SAKELLQHQFLKI  275 (293)
T ss_dssp             CHHHHTTCGGGGG
T ss_pred             CHHHHhcCHhhCC
Confidence            6699999999974

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-26  Score=180.76  Aligned_cols=132  Identities=23%  Similarity=0.358  Sum_probs=115.3

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ...+.||+.||+|||++     ||||+||+++.+.   +++|+|||+++..... .....+||+.|||   |    |++.
T Consensus       109 ~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~---~~kl~DFG~a~~~~~~-~~~~~~Gt~~Y~A---P----E~~~  177 (263)
T d2j4za1         109 ATYITELANALSYCHSKRVIHRDIKPENLLLGSAG---ELKIADFGWSVHAPSS-RRTTLCGTLDYLP---P----EMIE  177 (263)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS---CEEECCCCSCSCCCCC-CCEETTEEGGGCC---H----HHHT
T ss_pred             HHHHHHHHHHHHHHHHCCeeeeeeccccceecCCC---CEeecccceeeecCCC-cccccCCCCcccC---H----HHHc
Confidence            34578999999999998     8999999999853   4999999999766443 3456789999999   9    9998


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      +..|+.              ++|..||. +.+..+++..+.   ...+.+|..+|+++++||.+||..||.+||     +
T Consensus       178 ~~~~~~~~DiwSlGvilyell~G~~Pf~-~~~~~~~~~~i~---~~~~~~p~~~s~~~~~li~~~L~~dp~~R~-----t  248 (263)
T d2j4za1         178 GRMHDEKVDLWSLGVLCYEFLVGKPPFE-ANTYQETYKRIS---RVEFTFPDFVTEGARDLISRLLKHNPSQRP-----M  248 (263)
T ss_dssp             TCCCCTTHHHHHHHHHHHHHHHSSCTTC-CSSHHHHHHHHH---TTCCCCCTTSCHHHHHHHHHHTCSSGGGSC-----C
T ss_pred             CCCCCchhhhhhHhHHHHHHhcCCCCCC-CCCHHHHHHHHH---cCCCCCCccCCHHHHHHHHHHccCCHhHCc-----C
Confidence            877775              99999999 999999999988   347888999999999999999999999999     6


Q ss_pred             hhhhhcCCCCC
Q psy3184         149 IVDIKKHKWFQ  159 (185)
Q Consensus       149 ~~~ll~hp~f~  159 (185)
                      ++++++||||+
T Consensus       249 ~~eil~hp~~~  259 (263)
T d2j4za1         249 LREVLEHPWIT  259 (263)
T ss_dssp             HHHHHTCHHHH
T ss_pred             HHHHHcCcCcC
Confidence            69999999995

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=2.4e-26  Score=182.60  Aligned_cols=139  Identities=19%  Similarity=0.409  Sum_probs=101.7

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ...+.||+.||+|||++     ||||+||++........++|+|||+++....+....+.+||+.|||   |    |++.
T Consensus       110 ~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~A---P----E~~~  182 (307)
T d1a06a_         110 SRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVA---P----EVLA  182 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC------------------CTTSC---H----HHHT
T ss_pred             HHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCCCeeeeeeeCccccC---c----HHHc
Confidence            44588999999999998     8999999997633333599999999998777766778899999999   9    9988


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCcc--CCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKI--PFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~--~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      +..|+.              ++|.+||. +.+..++...+. .+...+  ..+..+|+++++||.+||.+||.+||    
T Consensus       183 ~~~~~~~~DiwSlGvilyell~g~~Pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~----  256 (307)
T d1a06a_         183 QKPYSKAVDCWSIGVIAYILLCGYPPFY-DENDAKLFEQIL-KAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRF----  256 (307)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHH-TTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSC----
T ss_pred             CCCCCcHHHhhhhhHHHHHHHhCCCCCC-CCCHHHHHHHHh-ccCCCCCCccccCCCHHHHHHHHHHccCCHhHCc----
Confidence            887776              99999999 888888888888 332222  22357899999999999999999999    


Q ss_pred             CChhhhhcCCCCCC
Q psy3184         147 GGIVDIKKHKWFQG  160 (185)
Q Consensus       147 ~~~~~ll~hp~f~~  160 (185)
                       ++.++++||||++
T Consensus       257 -s~~eil~hp~~~~  269 (307)
T d1a06a_         257 -TCEQALQHPWIAG  269 (307)
T ss_dssp             -CHHHHHHSTTTTS
T ss_pred             -CHHHHhcCHhhCC
Confidence             6699999999975

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.93  E-value=4.7e-26  Score=183.87  Aligned_cols=140  Identities=16%  Similarity=0.223  Sum_probs=119.4

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ...+.||+.||+|||++     ||||+||++..+..+ .++|+|||+++.+.......+.+||+.|||   |    |++.
T Consensus       127 ~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~-~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~a---P----Ev~~  198 (350)
T d1koaa2         127 VEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSN-ELKLIDFGLTAHLDPKQSVKVTTGTAEFAA---P----EVAE  198 (350)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSC-CEEECCCTTCEECCTTSCEEEECSCTTTCC---H----HHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCC-eEEEeecchheecccccccceecCcccccC---H----HHHc
Confidence            34578999999999998     899999999765334 499999999998877777778899999999   9    9998


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      +..|+.              ++|..||. +.+..+++..|. .+  ...++    ..+|+++++||.+||..||.+||  
T Consensus       199 ~~~~~~~~DiwSlGvilyell~G~~Pf~-~~~~~~~~~~i~-~~--~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~--  272 (350)
T d1koaa2         199 GKPVGYYTDMWSVGVLSYILLSGLSPFG-GENDDETLRNVK-SC--DWNMDDSAFSGISEDGKDFIRKLLLADPNTRM--  272 (350)
T ss_dssp             TCCBCHHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HT--CCCSCCGGGGGCCHHHHHHHHHHCCSSGGGSC--
T ss_pred             CCCCChhHhhhhhhHHHHHHHhCCCCCC-CCCHHHHHHHHH-hC--CCCCCcccccCCCHHHHHHHHHHccCChhHCc--
Confidence            887775              89999999 889999998888 33  33333    46899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCCCChh
Q psy3184         145 QRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~~~~~  164 (185)
                         +++++++||||+...|.
T Consensus       273 ---t~~eil~hp~~~~~~~~  289 (350)
T d1koaa2         273 ---TIHQALEHPWLTPGNAP  289 (350)
T ss_dssp             ---CHHHHHHSTTTSCTTCC
T ss_pred             ---CHHHHhcCcccCCCCCC
Confidence               66999999999987664

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2e-25  Score=174.38  Aligned_cols=137  Identities=21%  Similarity=0.331  Sum_probs=106.9

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCccccc
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      +....||+.||+|||++     ||||+||+++.+.   +++|+|||+++......   .....+||+.|||   |    |
T Consensus       106 ~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~---~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~A---P----E  175 (271)
T d1nvra_         106 QRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERD---NLKISDFGLATVFRYNNRERLLNKMCGTLPYVA---P----E  175 (271)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTC---CEEECCCTTCEECEETTEECCBCCCCSCGGGSC---T----H
T ss_pred             HHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCC---CEEEccchhheeeccCCccccccceeeCcCccC---H----h
Confidence            34578999999999998     8999999998853   49999999998775432   3456789999999   9    9


Q ss_pred             chhccCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          80 MIINVGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        80 ~~~~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ++.+..|..               ++|.+||....+....+..+. ........+..+|+++++||.+||..||.+||  
T Consensus       176 ~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~--  252 (271)
T d1nvra_         176 LLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWK-EKKTYLNPWKKIDSAPLALLHKILVENPSARI--  252 (271)
T ss_dssp             HHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHH-TTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSC--
T ss_pred             HhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHh-cCCCCCCccccCCHHHHHHHHHHcCCChhHCc--
Confidence            888776643               899999983334444444444 22122233357899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQG  160 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~  160 (185)
                         +++++++||||+.
T Consensus       253 ---t~~eil~hpwf~~  265 (271)
T d1nvra_         253 ---TIPDIKKDRWYNK  265 (271)
T ss_dssp             ---CHHHHTTCTTTTC
T ss_pred             ---CHHHHhcCHhhCc
Confidence               6699999999963

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-25  Score=175.38  Aligned_cols=134  Identities=22%  Similarity=0.366  Sum_probs=108.4

Q ss_pred             ccHHHHHHHHHHHhhc-------CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184           9 LDTLQVKEMVESMHQA-------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ..+.||+.||+|||++       ||||+||+++.+. + .++|+|||+++... .....+.+||+.|||   |    |++
T Consensus       116 ~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~-~-~~Kl~DFGla~~~~-~~~~~~~~GT~~Y~a---P----E~~  185 (270)
T d1t4ha_         116 SWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPT-G-SVKIGDLGLATLKR-ASFAKAVIGTPEFMA---P----EMY  185 (270)
T ss_dssp             HHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTT-S-CEEECCTTGGGGCC-TTSBEESCSSCCCCC---G----GGG
T ss_pred             HHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCC-C-CEEEeecCcceecc-CCccCCcccCccccC---H----HHh
Confidence            3478999999999986       7899999997532 2 49999999997543 334557899999999   9    877


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      .+ +|+.              ++|..||....+...++..+. .+..+..++..+++++++||.+||..||.+||     
T Consensus       186 ~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~-----  258 (270)
T d1t4ha_         186 EE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVT-SGVKPASFDKVAIPEVKEIIEGCIRQNKDERY-----  258 (270)
T ss_dssp             GT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHT-TTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSC-----
T ss_pred             CC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHH-cCCCCcccCccCCHHHHHHHHHHccCCHhHCc-----
Confidence            64 4655              899999984556667777776 55455666778999999999999999999999     


Q ss_pred             ChhhhhcCCCCC
Q psy3184         148 GIVDIKKHKWFQ  159 (185)
Q Consensus       148 ~~~~ll~hp~f~  159 (185)
                      +++++++||||+
T Consensus       259 s~~ell~Hp~fk  270 (270)
T d1t4ha_         259 SIKDLLNHAFFQ  270 (270)
T ss_dssp             CHHHHHTSGGGC
T ss_pred             CHHHHhCCcccC
Confidence            669999999996

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.92  E-value=3.5e-25  Score=178.87  Aligned_cols=136  Identities=21%  Similarity=0.333  Sum_probs=116.4

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ....||+.||+|||++     ||||+||+++....+ .++|+|||+++.+..+....+.+||+.|||   |    |++.+
T Consensus       131 ~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~-~vkL~DFGla~~~~~~~~~~~~~gt~~y~a---P----E~~~~  202 (352)
T d1koba_         131 NYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKAS-SVKIIDFGLATKLNPDEIVKVTTATAEFAA---P----EIVDR  202 (352)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCC-CEEECCCTTCEECCTTSCEEEECSSGGGCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHHCCeeecccccccccccccCCC-eEEEeecccceecCCCCceeeccCcccccC---H----HHHcC
Confidence            3478999999999998     899999999854334 499999999998877777778899999999   9    99888


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      ..|+.              ++|.+||. +.+..+++..+. .+  .+.+|    ..+|+++++||.+||..||.+||   
T Consensus       203 ~~~~~~~DiwSlGvilyelltG~~Pf~-~~~~~~~~~~i~-~~--~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~---  275 (352)
T d1koba_         203 EPVGFYTDMWAIGVLGYVLLSGLSPFA-GEDDLETLQNVK-RC--DWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRL---  275 (352)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHSCCSSC-CSSHHHHHHHHH-HC--CCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSC---
T ss_pred             CCCCCccchHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHH-hC--CCCCCcccccCCCHHHHHHHHHHccCChhHCc---
Confidence            87776              89999999 888888888887 33  33333    56899999999999999999999   


Q ss_pred             CCChhhhhcCCCCCCC
Q psy3184         146 RGGIVDIKKHKWFQGF  161 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~~  161 (185)
                        ++.++++||||++.
T Consensus       276 --s~~eil~Hp~~~~~  289 (352)
T d1koba_         276 --TVHDALEHPWLKGD  289 (352)
T ss_dssp             --CHHHHHTSTTTSSC
T ss_pred             --CHHHHhcCHhhCCC
Confidence              66999999999863

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.4e-25  Score=174.33  Aligned_cols=140  Identities=14%  Similarity=0.186  Sum_probs=115.2

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++++|||.++...........+||+.|||   |    |++.+
T Consensus       120 ~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~---~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~A---P----E~~~~  189 (305)
T d1blxa_         120 DMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSG---QIKLADFGLARIYSFQMALTSVVVTLWYRA---P----EVLLQ  189 (305)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC---CEEECSCCSCCCCCGGGGGCCCCCCCTTCC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCC---CeeecchhhhhhhcccccCCCcccChhhcC---c----chhcC
Confidence            4588999999999998     8999999998853   389999999987766666778899999999   9    98888


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCC------------------------CccCCCCCCCHH
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGI------------------------DKIPFPKHVTRT  125 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~------------------------~~~~~p~~~s~~  125 (185)
                      ..|+.              ++|.+||. +.+..+.+..+.....                        ....++..+|++
T Consensus       190 ~~y~~~~DiwSlG~il~ell~g~~pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  268 (305)
T d1blxa_         190 SSYATPVDLWSVGCIFAEMFRRKPLFR-GSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDEL  268 (305)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHH
T ss_pred             CCCChhehhhchHHHHHHHHHCCCCCC-CCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHH
Confidence            88876              89999999 8887777766642100                        001233468999


Q ss_pred             HHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         126 AQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       126 ~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                      +++||.+||..||.+||     ++.++++||||+++++.
T Consensus       269 ~~dli~~mL~~dP~~R~-----sa~e~L~Hpff~~i~~~  302 (305)
T d1blxa_         269 GKDLLLKCLTFNPAKRI-----SAYSALSHPYFQDLERC  302 (305)
T ss_dssp             HHHHHHHHSCSSTTTSC-----CHHHHHTSGGGTTCCCC
T ss_pred             HHHHHHHHCcCChhHCc-----CHHHHhcChhhcCchhh
Confidence            99999999999999999     66999999999988653

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.7e-25  Score=174.99  Aligned_cols=138  Identities=15%  Similarity=0.193  Sum_probs=112.1

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.   +++|+|||+++..... ....+.+||+.|||   |    |++
T Consensus       113 ~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~---~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~A---P----E~l  182 (288)
T d2jfla1         113 QVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDG---DIKLADFGVSAKNTRTIQRRDSFIGTPYWMA---P----EVV  182 (288)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS---CEEECCCTTCEECHHHHHHHTCCCSCCTTCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHHCCEEEeecChhheeECCCC---CEEEEechhhhccCCCcccccccccccccCC---H----HHH
Confidence            44578999999999997     8999999999863   4999999999766432 33456899999999   9    776


Q ss_pred             h-----ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCccc
Q psy3184          82 I-----NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        82 ~-----~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                      .     ...|+.              ++|.+||. +.+..+.+..+.+.....+..|..+|+++++||++||..||.+||
T Consensus       183 ~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~-~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~  261 (288)
T d2jfla1         183 MCETSKDRPYDYKADVWSLGITLIEMAEIEPPHH-ELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARW  261 (288)
T ss_dssp             TTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTT-TSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTTSC
T ss_pred             hhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCC-CCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHccCChhHCc
Confidence            3     334554              99999999 888888888887333234455678999999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCCC
Q psy3184         143 GYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~~  161 (185)
                           ++.++++||||+.-
T Consensus       262 -----t~~ell~hp~~~~~  275 (288)
T d2jfla1         262 -----TTSQLLQHPFVTVD  275 (288)
T ss_dssp             -----CHHHHTTSGGGCCC
T ss_pred             -----CHHHHhcCcccCCC
Confidence                 66999999999753

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.5e-25  Score=172.12  Aligned_cols=132  Identities=13%  Similarity=0.210  Sum_probs=106.0

Q ss_pred             ccHHHHHHHHHHHhhc----------CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCccc
Q psy3184           9 LDTLQVKEMVESMHQA----------EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQT   77 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~----------~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~   77 (185)
                      ..+.||+.||+|||+.          ||||+||+++.+.   +++|+|||+++.+... ....+.+||+.|||   |   
T Consensus       113 ~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~---~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~A---P---  183 (269)
T d2java1         113 RVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQ---NVKLGDFGLARILNHDTSFAKAFVGTPYYMS---P---  183 (269)
T ss_dssp             HHHHHHHHHHHHHHHHCC---------CCGGGEEECTTS---CEEECCHHHHHHC-----------CCCSCCC---H---
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCC---cEEEeeccceeecccCCCccccCCCCcccCC---H---
Confidence            4578999999999962          8999999999863   4999999999876543 34456899999999   9   


Q ss_pred             ccchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          78 YNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        78 ~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                       |++.+..|+.              ++|..||. +.+..++...+.+ + ....+|..+|+++++||.+||..||.+|| 
T Consensus       184 -E~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~-~~~~~~~~~~i~~-~-~~~~~~~~~s~~l~~li~~~L~~dp~~Rp-  258 (269)
T d2java1         184 -EQMNRMSYNEKSDIWSLGCLLYELCALMPPFT-AFSQKELAGKIRE-G-KFRRIPYRYSDELNEIITRMLNLKDYHRP-  258 (269)
T ss_dssp             -HHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHH-T-CCCCCCTTSCHHHHHHHHHHTCSSGGGSC-
T ss_pred             -HHHcCCCCChHHHHHhhCHHHHHHhhCCCCCC-CCCHHHHHHHHHc-C-CCCCCCcccCHHHHHHHHHHcCCChhHCc-
Confidence             9988877775              89999999 8899999888883 3 34567788999999999999999999999 


Q ss_pred             CCCCChhhhhcCCCC
Q psy3184         144 YQRGGIVDIKKHKWF  158 (185)
Q Consensus       144 ~~~~~~~~ll~hp~f  158 (185)
                          ++.++++|||+
T Consensus       259 ----s~~ell~hp~i  269 (269)
T d2java1         259 ----SVEEILENPLI  269 (269)
T ss_dssp             ----CHHHHHTSTTC
T ss_pred             ----CHHHHHhCCcC
Confidence                66999999995

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.90  E-value=2.4e-24  Score=168.62  Aligned_cols=137  Identities=20%  Similarity=0.360  Sum_probs=112.8

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+..+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.+..+......+||+.|+|   |    |++
T Consensus       112 ~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~---~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~---P----E~~  181 (277)
T d1phka_         112 TRKIMRALLEVICALHKLNIVHRDLKPENILLDDDM---NIKLTDFGFSCQLDPGEKLREVCGTPSYLA---P----EII  181 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC---CEEECCCTTCEECCTTCCBCCCCSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCC---CeEEccchheeEccCCCceeeeeccCCCCC---H----HHh
Confidence            445689999999999998     8999999998753   399999999998877666677899999999   9    776


Q ss_pred             hcc------Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC--CCCCHHHHHHHHHHhhcCcC
Q psy3184          82 INV------GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPA  139 (185)
Q Consensus        82 ~~~------~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p--~~~s~~~~~li~~~l~~dp~  139 (185)
                      ...      .|+.              ++|..||. +.+.......+. .+...+..|  ..+|+++++||++||..||.
T Consensus       182 ~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~  259 (277)
T d1phka_         182 ECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFW-HRKQMLMLRMIM-SGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQ  259 (277)
T ss_dssp             HHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHH-HTCCCCCTTTGGGSCHHHHHHHHHHCCSSGG
T ss_pred             hccccccCCCCCchheEcccchhhhhhccCCCCCC-CCCHHHHHHHHH-hCCCCCCCcccccCCHHHHHHHHHHccCChh
Confidence            532      2332              99999999 888888888888 342222222  46999999999999999999


Q ss_pred             cccCCCCCChhhhhcCCCCCC
Q psy3184         140 ERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       140 ~R~~~~~~~~~~ll~hp~f~~  160 (185)
                      +||     +++++++||||+.
T Consensus       260 ~R~-----s~~eil~h~~~~~  275 (277)
T d1phka_         260 KRY-----TAEEALAHPFFQQ  275 (277)
T ss_dssp             GSC-----CHHHHTTSGGGCT
T ss_pred             HCc-----CHHHHHcCHHHHH
Confidence            999     6699999999975

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.9e-24  Score=165.84  Aligned_cols=131  Identities=24%  Similarity=0.334  Sum_probs=107.1

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +....||+.||+|||++     ||||+||+++.+. + .++|+|||.++..... ...+.+||+.|||   |    |++.
T Consensus       113 ~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~-~-~vkl~DFG~a~~~~~~-~~~~~~GT~~y~a---P----E~~~  182 (273)
T d1xwsa_         113 RSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNR-G-ELKLIDFGSGALLKDT-VYTDFDGTRVYSP---P----EWIR  182 (273)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTT-T-EEEECCCTTCEECCSS-CBCCCCSCGGGSC---H----HHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCccccCcccceEEecCC-C-eEEECccccceecccc-cccccccCCCcCC---H----HHHc
Confidence            34578999999999998     8999999998652 2 5999999999865443 4456899999999   9    9887


Q ss_pred             ccCcce---------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      +..|..               ++|..||. +.+      .+. .  ....+|..+|+++++||++||..||.+||     
T Consensus       183 ~~~~~~~~~DiwSlGvilyell~g~~Pf~-~~~------~i~-~--~~~~~~~~~s~~~~~li~~~L~~dp~~R~-----  247 (273)
T d1xwsa_         183 YHRYHGRSAAVWSLGILLYDMVCGDIPFE-HDE------EII-R--GQVFFRQRVSSECQHLIRWCLALRPSDRP-----  247 (273)
T ss_dssp             HSCBCHHHHHHHHHHHHHHHHHHSSCSCC-SHH------HHH-H--CCCCCSSCCCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             CCCCCCcccccccceeeehhHhhCCCCCC-Cch------HHh-h--cccCCCCCCCHHHHHHHHHHccCCHhHCc-----
Confidence            665533               89999998 432      344 2  36778889999999999999999999999     


Q ss_pred             ChhhhhcCCCCCCCCh
Q psy3184         148 GIVDIKKHKWFQGFDW  163 (185)
Q Consensus       148 ~~~~ll~hp~f~~~~~  163 (185)
                      +++++++||||+++..
T Consensus       248 s~~eil~hp~~~~~~~  263 (273)
T d1xwsa_         248 TFEEIQNHPWMQDVLL  263 (273)
T ss_dssp             CHHHHHTSGGGSSCCC
T ss_pred             CHHHHhcCHhhCCCCC
Confidence            6699999999987654

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=6.4e-24  Score=168.56  Aligned_cols=134  Identities=16%  Similarity=0.199  Sum_probs=108.5

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      ....+.||+.||+|||++     ||||+||+++.+.   +++|+|||+++....   ....+||+.|||   |    |++
T Consensus       117 ~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~---~~Kl~DFG~a~~~~~---~~~~~GT~~Y~A---P----E~~  183 (309)
T d1u5ra_         117 IAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPG---LVKLGDFGSASIMAP---ANSFVGTPYWMA---P----EVI  183 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTT---EEEECCCTTCBSSSS---BCCCCSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCC---CEEEeecccccccCC---CCccccCccccC---H----HHH
Confidence            344689999999999998     8999999998753   499999999975433   345789999999   9    887


Q ss_pred             hc---cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          82 IN---VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        82 ~~---~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      .+   ..|+.              ++|..||. +.+..+.+..+. .+..+...+..+|+++++||.+||..||.+||  
T Consensus       184 ~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~-~~~~~~~~~~i~-~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp--  259 (309)
T d1u5ra_         184 LAMDEGQYDGKVDVWSLGITCIELAERKPPLF-NMNAMSALYHIA-QNESPALQSGHWSEYFRNFVDSCLQKIPQDRP--  259 (309)
T ss_dssp             TTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTT-TSCHHHHHHHHH-HSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSC--
T ss_pred             hccCCCCcCchhhhhhHHHHHHHHHHCCCCCC-CCCHHHHHHHHH-hCCCCCCCCCCCCHHHHHHHHHHCcCChhHCc--
Confidence            53   23554              89999999 888888877777 33233334456899999999999999999999  


Q ss_pred             CCCChhhhhcCCCCCC
Q psy3184         145 QRGGIVDIKKHKWFQG  160 (185)
Q Consensus       145 ~~~~~~~ll~hp~f~~  160 (185)
                         +++++++||||+.
T Consensus       260 ---t~~ell~Hp~~~~  272 (309)
T d1u5ra_         260 ---TSEVLLKHRFVLR  272 (309)
T ss_dssp             ---CHHHHTTCHHHHS
T ss_pred             ---CHHHHHhCHHhcC
Confidence               6699999999954

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.2e-24  Score=171.15  Aligned_cols=135  Identities=18%  Similarity=0.307  Sum_probs=115.8

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ....||+.||+|||++     ||||+||+++.+... .++++|||+++.........+.+||+.|+|   |    |++.+
T Consensus       106 ~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~-~ikl~DFG~~~~~~~~~~~~~~~~t~~y~a---p----e~~~~  177 (321)
T d1tkia_         106 SYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSS-TIKIIEFGQARQLKPGDNFRLLFTAPEYYA---P----EVHQH  177 (321)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCC-CEEECCCTTCEECCTTCEEEEEESCGGGSC---H----HHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCCcccccccceeecCCCce-EEEEcccchhhccccCCccccccccccccc---c----hhccC
Confidence            3478999999999998     899999999875433 499999999998877666777899999999   9    98887


Q ss_pred             cCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCC----CCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          84 VGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP----KHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        84 ~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      ..|+.              ++|.+||. +.+..+++..|. .+  .+.+|    ..+|+++++||++||..||.+||   
T Consensus       178 ~~~~~~~DiWSlGvily~ll~G~~Pf~-~~~~~~~~~~i~-~~--~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~---  250 (321)
T d1tkia_         178 DVVSTATDMWSLGTLVYVLLSGINPFL-AETNQQIIENIM-NA--EYTFDEEAFKEISIEAMDFVDRLLVKERKSRM---  250 (321)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHSSCTTC-CSSHHHHHHHHH-HT--CCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSC---
T ss_pred             CCCCchhhcccHHHHHHHHHhCCCCCC-CCCHHHHHHHHH-hC--CCCCChhhccCCCHHHHHHHHHHccCChhHCc---
Confidence            76765              89999999 999999999988 33  55555    36899999999999999999999   


Q ss_pred             CCChhhhhcCCCCCC
Q psy3184         146 RGGIVDIKKHKWFQG  160 (185)
Q Consensus       146 ~~~~~~ll~hp~f~~  160 (185)
                        +++++++||||+.
T Consensus       251 --s~~eil~hp~~~~  263 (321)
T d1tkia_         251 --TASEALQHPWLKQ  263 (321)
T ss_dssp             --CHHHHHHSHHHHS
T ss_pred             --CHHHHhcCHhhcc
Confidence              6699999999964

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.8e-24  Score=171.05  Aligned_cols=141  Identities=19%  Similarity=0.300  Sum_probs=108.9

Q ss_pred             hcccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184           7 KNLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         7 ~~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+....||+.||+|||++     ||||+||+++.+.....++|+|||+++...........+||+.|||   |    |++
T Consensus       113 ~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~a---P----E~~  185 (335)
T d2ozaa1         113 ASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVA---P----EVL  185 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCCCCCSCCCSSCC---C----CCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccceeeeccCCCccccccCCcccCC---c----HHH
Confidence            344578999999999997     8999999998743333499999999998877666778899999999   9    888


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHHHHHHHhcC-CCccCCC----CCCCHHHHHHHHHHhhcCcCccc
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVG-IDKIPFP----KHVTRTAQSLIKALCKESPAERL  142 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~-~~~~~~p----~~~s~~~~~li~~~l~~dp~~R~  142 (185)
                      .+..|+.              ++|.+||. +.+.......+.... ...+.+|    ..+|+++++||++||..||.+||
T Consensus       186 ~~~~y~~~~DiwSlGvily~lltg~~Pf~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~  264 (335)
T d2ozaa1         186 GPEKYDKSCDMWSLGVIMYILLCGYPPFY-SNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRM  264 (335)
T ss_dssp             CGGGGSHHHHHHHHHHHHHHHTTSSCSCE-ETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSC
T ss_pred             cCCCCCHHHHHHhhchhHHHHhhCCCCCC-CCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCc
Confidence            8777775              99999998 665544443332110 2344555    25899999999999999999999


Q ss_pred             CCCCCChhhhhcCCCCCC
Q psy3184         143 GYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       143 ~~~~~~~~~ll~hp~f~~  160 (185)
                           ++.++++||||+.
T Consensus       265 -----s~~eil~hp~~~~  277 (335)
T d2ozaa1         265 -----TITEFMNHPWIMQ  277 (335)
T ss_dssp             -----CHHHHHHSHHHHT
T ss_pred             -----CHHHHHcCHHhhC
Confidence                 6699999999953

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-24  Score=172.63  Aligned_cols=138  Identities=14%  Similarity=0.211  Sum_probs=102.9

Q ss_pred             cccHHHHHHHHHHHhh-c-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQ-A-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~-~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      +..+.||+.||+|||+ +     ||||+||+++.+.   +++|+|||+++.... ....+++||+.|||   |    |++
T Consensus       107 ~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~---~vkl~DFGla~~~~~-~~~~~~~GT~~Y~A---P----Evl  175 (322)
T d1s9ja_         107 GKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRG---EIKLCDFGVSGQLID-SMANSFVGTRSYMS---P----ERL  175 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTC---CEEECCCCCCHHHHH-HTC---CCSSCCCC---H----HHH
T ss_pred             HHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCC---CEEEeeCCCccccCC-CccccccCCccccC---c----hHH
Confidence            3457899999999996 3     8999999998853   499999999985533 23456799999999   9    999


Q ss_pred             hccCcce--------------eccCCCCCCCCChHHH------------------------------------------H
Q psy3184          82 INVGIDN--------------IFSRPPFCVMNDPMQT------------------------------------------Y  105 (185)
Q Consensus        82 ~~~~~~~--------------l~g~~Pf~~~~~~~~~------------------------------------------~  105 (185)
                      .+..|+.              ++|+.||. +.+....                                          .
T Consensus       176 ~~~~y~~~~DiWSlGvil~ell~G~~Pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (322)
T d1s9ja_         176 QGTHYSVQSDIWSMGLSLVEMAVGRYPIP-PPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELL  254 (322)
T ss_dssp             HCSCCCTTHHHHHHHHHHHHHHHSSCCSS-CCCTTHHHHHC------------------------------CCCCHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHH
Confidence            8887876              89999998 5443221                                          1


Q ss_pred             HHHHhcCCCccCCC-CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         106 NMIINVGIDKIPFP-KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       106 ~~i~~~~~~~~~~p-~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                      ..+.+  ..++..| ..+|.++++||.+||..||.+||     +++++++||||+..+|.
T Consensus       255 ~~~~~--~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~-----ta~e~L~Hpf~~~~~~~  307 (322)
T d1s9ja_         255 DYIVN--EPPPKLPSGVFSLEFQDFVNKCLIKNPAERA-----DLKQLMVHAFIKRSDAE  307 (322)
T ss_dssp             HHHHT--SCCCCCCBTTBCHHHHHHHHHHTCSSTTTSC-----CHHHHHTSHHHHHHHHS
T ss_pred             hhhhc--cCCccCccccCCHHHHHHHHHHcCCChhHCc-----CHHHHhhCHhhCcCCcc
Confidence            11110  0122233 24689999999999999999999     66999999999876654

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.89  E-value=2.9e-23  Score=165.48  Aligned_cols=143  Identities=19%  Similarity=0.242  Sum_probs=108.5

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.  ..++++|||.++....+......+||+.|+|   |    |++.
T Consensus       132 ~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~--~~vkl~DFG~a~~~~~~~~~~~~~~t~~y~a---P----E~~~  202 (328)
T d3bqca1         132 RFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEH--RKLRLIDWGLAEFYHPGQEYNVRVASRYFKG---P----ELLV  202 (328)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTT--TEEEECCGGGCEECCTTCCCCSCCSCGGGCC---H----HHHT
T ss_pred             HHHHHHHHHHHHHHhhcccccccccccceEEcCCC--CeeeecccccceeccCCCcccccccCccccC---c----cccc
Confidence            44589999999999998     8999999998753  2489999999998877777778899999999   9    8877


Q ss_pred             cc-Ccce--------------eccCCCCCCCCChHHHHHHHHhc-C------------C-C-------------------
Q psy3184          83 NV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-G------------I-D-------------------  114 (185)
Q Consensus        83 ~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~------------~-~-------------------  114 (185)
                      +. .|+.              ++|..||..+.+.......+... |            . .                   
T Consensus       203 ~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (328)
T d3bqca1         203 DYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERF  282 (328)
T ss_dssp             TCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGG
T ss_pred             CCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhc
Confidence            54 3443              89999997344433322222100 0            0 0                   


Q ss_pred             -ccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         115 -KIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       115 -~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                       .......+|+++++||++||..||.+||     +++++|+||||+++.|+
T Consensus       283 ~~~~~~~~~s~~~~dli~~mL~~dP~~R~-----ta~e~L~Hp~F~~v~~~  328 (328)
T d3bqca1         283 VHSENQHLVSPEALDFLDKLLRYDHQSRL-----TAREAMEHPYFYTVVKD  328 (328)
T ss_dssp             CCTTTGGGCCHHHHHHHHHHSCSSGGGSC-----CHHHHHTSGGGTTSCCC
T ss_pred             ccccccccCCHHHHHHHHHHccCChhHCc-----CHHHHhcCcccCCCCCC
Confidence             0001134799999999999999999999     66999999999999885

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.1e-23  Score=163.42  Aligned_cols=138  Identities=17%  Similarity=0.210  Sum_probs=107.0

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccchh
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++|+|||.++..... ....+.+||+.|+|   |    |++.
T Consensus       104 ~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~---~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~a---P----E~~~  173 (299)
T d1ua2a_         104 AYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENG---VLKLADFGLAKSFGSPNRAYTHQVVTRWYRA---P----ELLF  173 (299)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC---CEEECCCGGGSTTTSCCCCCCCSCCCCTTCC---H----HHHT
T ss_pred             HHHHHHHHHHHHhhccceecccCCcceEEecCCC---ccccccCccccccCCCcccccceecChhhcc---H----HHHc
Confidence            4478999999999998     8999999999853   4999999999765443 34456789999999   9    8876


Q ss_pred             cc-Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CC-Ccc---------------CC---C-----CCC
Q psy3184          83 NV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI-DKI---------------PF---P-----KHV  122 (185)
Q Consensus        83 ~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~-~~~---------------~~---p-----~~~  122 (185)
                      .. .|+.              ++|.+||. +.+..+.+.+|... +. ...               .+   |     ..+
T Consensus       174 ~~~~~~~~~DiwSlGvil~el~~g~~pf~-~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (299)
T d1ua2a_         174 GARMYGVGVDMWAVGCILAELLLRVPFLP-GDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAA  252 (299)
T ss_dssp             TCSCCCHHHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTC
T ss_pred             cCCCCChhhhhhhcchHHHHHHhCcCCCC-CCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccC
Confidence            43 4554              89999999 88887777766521 00 000               00   1     257


Q ss_pred             CHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCC
Q psy3184         123 TRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD  162 (185)
Q Consensus       123 s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~  162 (185)
                      |+++++||++||..||.+||     +++++++||||++..
T Consensus       253 s~~~~dll~~~L~~dP~~R~-----sa~e~L~Hp~f~~~p  287 (299)
T d1ua2a_         253 GDDLLDLIQGLFLFNPCARI-----TATQALKMKYFSNRP  287 (299)
T ss_dssp             CHHHHHHHHHHHCSSTTTSC-----CHHHHHTSGGGTSSS
T ss_pred             CHHHHHHHHHHccCChhhCc-----CHHHHhCCHhhCCCC
Confidence            89999999999999999999     669999999998643

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-22  Score=159.62  Aligned_cols=138  Identities=14%  Similarity=0.165  Sum_probs=106.9

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeec-CcccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKD-GKILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~-~~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.   +++++|||.++.... .......+||+.|+|   |    |++
T Consensus       105 ~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~---~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~a---p----E~~  174 (298)
T d1gz8a_         105 KSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEG---AIKLADFGLARAFGVPVRTYTHEVVTLWYRA---P----EIL  174 (298)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTS---CEEECSTTHHHHHCCCSBCTTCCBCCCTTCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhhcCCEEccccCchheeecccC---cceeccCCcceeccCCcccceeecccceeee---h----hhh
Confidence            34578999999999998     8999999998753   489999999986643 344556789999999   9    887


Q ss_pred             hccCcce---------------eccCCCCCCCCChHHHHHHHHhcCCC--c-------------cCCC-----------C
Q psy3184          82 INVGIDN---------------IFSRPPFCVMNDPMQTYNMIINVGID--K-------------IPFP-----------K  120 (185)
Q Consensus        82 ~~~~~~~---------------l~g~~Pf~~~~~~~~~~~~i~~~~~~--~-------------~~~p-----------~  120 (185)
                      ....|..               ++|..||. +.+..+...++.+....  .             ..++           .
T Consensus       175 ~~~~~~~~~~DiwSlGvily~m~~G~~Pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (298)
T d1gz8a_         175 LGCKYYSTAVDIWSLGCIFAEMVTRRALFP-GDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVP  253 (298)
T ss_dssp             TTCSSCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHST
T ss_pred             ccccCCCccccccccchhhhHHhhCCCCCC-CCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhcc
Confidence            7655432               88999999 77777766655411000  0             0111           2


Q ss_pred             CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       121 ~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      .+|.++++||++||..||.+||     +++++++||||+++
T Consensus       254 ~~s~~~~dll~~mL~~dP~~R~-----t~~ell~H~ff~~~  289 (298)
T d1gz8a_         254 PLDEDGRSLLSQMLHYDPNKRI-----SAKAALAHPFFQDV  289 (298)
T ss_dssp             TCCHHHHHHHHHHTCSSTTTSC-----CHHHHHTSGGGTTC
T ss_pred             CCCHHHHHHHHHHccCChhHCc-----CHHHHhCCHhhccC
Confidence            5789999999999999999999     66999999999866

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.2e-22  Score=161.88  Aligned_cols=139  Identities=18%  Similarity=0.262  Sum_probs=108.9

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.  ..++|+|||+++....+....+.+||+.|+|   |    |++.
T Consensus       125 ~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~--~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~a---P----E~~~  195 (350)
T d1q5ka_         125 KLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDT--AVLKLCDFGSAKQLVRGEPNVSYICSRYYRA---P----ELIF  195 (350)
T ss_dssp             HHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTT--CCEEECCCTTCEECCTTSCCCSCCSCTTSCC---H----HHHT
T ss_pred             HHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCC--CceeEecccchhhccCCcccccccccccccC---h----HHhh
Confidence            34578999999999998     8999999998753  2489999999988877667777899999999   9    8776


Q ss_pred             cc-Ccce--------------eccCCCCCCCCChHHHHHHHHhc-CC-------------CccCC------------CCC
Q psy3184          83 NV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINV-GI-------------DKIPF------------PKH  121 (185)
Q Consensus        83 ~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~-------------~~~~~------------p~~  121 (185)
                      +. .|+.              ++|.+||. +.+..+.+..+... |.             ....+            ...
T Consensus       196 ~~~~~~~~~DIwSlG~il~el~~g~~pf~-~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (350)
T d1q5ka_         196 GATDYTSSIDVWSAGCVLAELLLGQPIFP-GDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPR  274 (350)
T ss_dssp             TCSSCCTHHHHHHHHHHHHHHHHTSCSSC-CSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTT
T ss_pred             cccCCCcceeecccceEEEehhhCCCCCC-CCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcccC
Confidence            53 4554              99999998 77766665555311 00             01111            134


Q ss_pred             CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         122 VTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       122 ~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      +|+++.+||.+||..||.+||     ++.++++||||+.+
T Consensus       275 ~s~~~~dLl~~mL~~dP~~R~-----ta~e~L~Hp~f~~~  309 (350)
T d1q5ka_         275 TPPEAIALCSRLLEYTPTARL-----TPLEACAHSFFDEL  309 (350)
T ss_dssp             SCHHHHHHHHHHSCSSGGGSC-----CHHHHHTSGGGGGG
T ss_pred             CCHHHHHHHHHHccCChhHCc-----CHHHHhcCHhhccc
Confidence            799999999999999999999     66999999999754

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.86  E-value=2.4e-22  Score=157.21  Aligned_cols=137  Identities=15%  Similarity=0.189  Sum_probs=101.7

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-cccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.   +++++|||.+...... .......|++.|+|   |    |++
T Consensus       103 ~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~---~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~---p----E~~  172 (286)
T d1ob3a_         103 KSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREG---ELKIADFGLARAFGIPVRKYTHEIVTLWYRA---P----DVL  172 (286)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTS---CEEECCTTHHHHHCC---------CCCTTCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCC---CEEecccccceecccCccccceecccchhhh---H----HHH
Confidence            34589999999999998     8999999998863   4999999998765443 23455679999999   9    887


Q ss_pred             hccC-cce--------------eccCCCCCCCCChHHHHHHHHhc-CCC-------------------------ccCCCC
Q psy3184          82 INVG-IDN--------------IFSRPPFCVMNDPMQTYNMIINV-GID-------------------------KIPFPK  120 (185)
Q Consensus        82 ~~~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~-~~~-------------------------~~~~p~  120 (185)
                      .+.. ++.              ++|++||. +.+..+.+.++... +..                         ...++.
T Consensus       173 ~~~~~~~~~~DiwslGv~l~el~~G~~pf~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (286)
T d1ob3a_         173 MGSKKYSTTIDIWSVGCIFAEMVNGTPLFP-GVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLK  251 (286)
T ss_dssp             TTCCSCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCC
T ss_pred             hCCCCCCcceeehhcCcHHHHHHHCCCCCC-CCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcc
Confidence            6543 333              99999999 77776666655310 000                         012234


Q ss_pred             CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       121 ~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                      .+|+++++||++||..||.+||     ++.++++||||+.
T Consensus       252 ~~s~~~~dli~~~L~~dP~~R~-----s~~ell~Hp~f~~  286 (286)
T d1ob3a_         252 GLDESGIDLLSKMLKLDPNQRI-----TAKQALEHAYFKE  286 (286)
T ss_dssp             SCCHHHHHHHHHHTCSSTTTSC-----CHHHHHTSGGGGC
T ss_pred             cCCHHHHHHHHHHccCChhHCc-----CHHHHhcCcccCc
Confidence            6899999999999999999999     6699999999973

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.8e-21  Score=156.09  Aligned_cols=139  Identities=15%  Similarity=0.158  Sum_probs=105.8

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.   .++++|||.++....  .....+||+.|+|   |    |++.
T Consensus       124 ~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~---~~kl~Dfg~a~~~~~--~~~~~~~t~~y~a---P----E~~~  191 (346)
T d1cm8a_         124 QFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDC---ELKILDFGLARQADS--EMTGYVVTRWYRA---P----EVIL  191 (346)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC---CEEECCCTTCEECCS--SCCSSCSCGGGCC---T----HHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcccccCcchhhccccc---ccccccccceeccCC--ccccccccccccC---H----HHHc
Confidence            44578999999999997     8999999999864   389999999986643  3456789999999   9    8876


Q ss_pred             ccC-cce--------------eccCCCCCCCCChHHHHHHHHhcCCC----------------------------ccCCC
Q psy3184          83 NVG-IDN--------------IFSRPPFCVMNDPMQTYNMIINVGID----------------------------KIPFP  119 (185)
Q Consensus        83 ~~~-~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~----------------------------~~~~p  119 (185)
                      +.. ++.              ++|.+||. +.+....+..+......                            .....
T Consensus       192 ~~~~~~~~~DiwSlGvil~ell~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (346)
T d1cm8a_         192 NWMRYTQTVDIWSVGCIMAEMITGKTLFK-GSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASIL  270 (346)
T ss_dssp             TTTCCCTTHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTC
T ss_pred             CCCCCCccchhhcchHHHHHHHHCcCCCC-CCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhc
Confidence            543 332              89999998 77665554443310000                            01122


Q ss_pred             CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChh
Q psy3184         120 KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWD  164 (185)
Q Consensus       120 ~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~  164 (185)
                      ..+|+++.+||.+||..||.+||     +++++++||||+.+.+.
T Consensus       271 ~~~s~~~~dli~~mL~~dP~~R~-----ta~eiL~Hp~f~~~~~~  310 (346)
T d1cm8a_         271 TNASPLAVNLLEKMLVLDAEQRV-----TAGEALAHPYFESLHDT  310 (346)
T ss_dssp             TTCCHHHHHHHHHHSCSSTTTSC-----CHHHHHHSGGGTTTC--
T ss_pred             cCCCHHHHHHHHHHCcCChhHCc-----CHHHHhcChhhCcCCCc
Confidence            45799999999999999999999     66999999999987654

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.9e-22  Score=160.70  Aligned_cols=154  Identities=18%  Similarity=0.218  Sum_probs=101.1

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.   .++++|||.++...........+||+.|+|   |    |++.
T Consensus       122 ~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~---~~kl~df~~~~~~~~~~~~~~~~~t~~y~a---P----E~l~  191 (355)
T d2b1pa1         122 SYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC---TLKILDFGLARTAGTSFMMTPYVVTRYYRA---P----EVIL  191 (355)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC---CEEECCCCC---------------CCTTCC---H----HHHT
T ss_pred             HHHHHHHHHHHHHhhhcccccccCCcccccccccc---ceeeechhhhhccccccccccccccccccC---h----hhhc
Confidence            34589999999999998     8999999999863   389999999987777777777899999999   9    9888


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCC-------------------cc---------CC--
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID-------------------KI---------PF--  118 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~-------------------~~---------~~--  118 (185)
                      +..|+.              ++|.+||. +.+......++......                   ..         .+  
T Consensus       192 ~~~~~~~~DiwSlG~~l~ell~g~~pF~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (355)
T d2b1pa1         192 GMGYKENVDIWSVGCIMGEMVRHKILFP-GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPD  270 (355)
T ss_dssp             TCCCCTTHHHHHHHHHHHHHHHSSCSSC-CSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCG
T ss_pred             CCCCCCCcccccccchHHHHhhCCCCCC-CCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCcccccccccccccc
Confidence            776665              89999998 77766555444310000                   00         00  


Q ss_pred             ---C------CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCC
Q psy3184         119 ---P------KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVA  179 (185)
Q Consensus       119 ---p------~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~  179 (185)
                         +      ...|+++.+||++||..||++||     +++++|+||||+...+  .......+|.+.+.
T Consensus       271 ~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~-----ta~elL~Hpw~~~~~~--~~~~~~~~~~~~~~  333 (355)
T d2b1pa1         271 SLFPADSEHNKLKASQARDLLSKMLVIDPAKRI-----SVDDALQHPYINVWYD--PAEVEAPPPQIYDK  333 (355)
T ss_dssp             GGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSC-----CHHHHHTSTTTGGGCC--HHHHTCCCC-----
T ss_pred             ccccccccccccCCHHHHHHHHHHCcCChhHCc-----CHHHHhcCcccCCCCC--cccccCCCCCCCCc
Confidence               0      12478899999999999999999     6699999999986433  33333455555443

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-21  Score=155.49  Aligned_cols=136  Identities=18%  Similarity=0.136  Sum_probs=103.3

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC-----cccccccCCccccccCCCccc
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG-----KILRLLSGRPPFCVMNDPMQT   77 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~-----~~~~~~~gt~~y~a~~~P~~~   77 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.   .++++|||+++.....     ....+.+||+.|+|   |   
T Consensus       120 ~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~a---P---  190 (318)
T d3blha1         120 KRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDG---VLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRP---P---  190 (318)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTS---CEEECCCTTCEECCC-----CCCCCSCCSCGGGCC---H---
T ss_pred             HHHHHHHHHHHHHhccCCEEecCcCchheeecCCC---cEEeeecceeeecccccccccccccceecCHHHhh---H---
Confidence            34578999999999997     8999999999863   4999999999766432     23345689999999   9   


Q ss_pred             ccchhcc-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCCccC---CC--------------------
Q psy3184          78 YNMIINV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIP---FP--------------------  119 (185)
Q Consensus        78 ~E~~~~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~---~p--------------------  119 (185)
                       |++... .|+.              ++|++||. +.+.......+.. ....+.   ..                    
T Consensus       191 -E~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~-~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (318)
T d3blha1         191 -ELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQ-GNTEQHQLALISQ-LCGSITPEVWPNVDNYELYEKLELVKGQKRK  267 (318)
T ss_dssp             -HHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHH-HHCCCCTTTSTTCCCC-------CCSSCCBC
T ss_pred             -HHHcCCCCCCcHHHcccCCceeeeHhhCCCCCC-CCCHHHHHHHHHH-hcCCCChhhccccchhhhhhhhccccccccc
Confidence             887654 4554              89999998 7777666655541 100000   00                    


Q ss_pred             -------CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCC
Q psy3184         120 -------KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG  160 (185)
Q Consensus       120 -------~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~  160 (185)
                             ...++++.+||.+||..||.+|+     +++++++||||+.
T Consensus       268 ~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~-----sa~elL~Hpff~~  310 (318)
T d3blha1         268 VKDRLKAYVRDPYALDLIDKLLVLDPAQRI-----DSDDALNHDFFWS  310 (318)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHSCSSTTTSC-----CHHHHHHSGGGSS
T ss_pred             chhhhccccCCHHHHHHHHHHCcCChhHCc-----CHHHHHcChhhcc
Confidence                   01378899999999999999999     6699999999974

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.3e-22  Score=158.28  Aligned_cols=129  Identities=13%  Similarity=0.080  Sum_probs=104.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   +++|+|||+++......   ...+.+||+.|||   |    |++
T Consensus       169 i~~qi~~gl~yLH~~~IiHRDlKp~Nill~~~~---~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~a---P----E~l  238 (325)
T d1rjba_         169 FAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGK---VVKICDFGLARDIMSDSNYVVRGNARLPVKWMA---P----ESL  238 (325)
T ss_dssp             HHHHHHHHHHHHHHTTEEETTCSGGGEEEETTT---EEEECCCGGGSCGGGCTTSEEETTEEECGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCeeeccCchhccccccCC---eEEEeeccccccccCCCceeeeccccCCCccCC---h----HHH
Confidence            478999999999998     8999999998853   59999999998664432   2235678999999   9    988


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....|+.              ++ |.+||. +.+..+.+..+...+ ..+..|..+|+++++||.+||..||.+||    
T Consensus       239 ~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~-~~~~~~~~~~~~~~~-~~~~~p~~~~~~l~~li~~cl~~dP~~RP----  312 (325)
T d1rjba_         239 FEGIYTIKSDVWSYGILLWEIFSLGVNPYP-GIPVDANFYKLIQNG-FKMDQPFYATEEIYIIMQSCWAFDSRKRP----  312 (325)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHTTTSCCSST-TCCCSHHHHHHHHTT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             cCCCCCcceeccchhHHHHHHHhCCCCCCC-CCCHHHHHHHHHhcC-CCCCCCCcCCHHHHHHHHHHcCCChhHCc----
Confidence            8777775              65 899998 766666655655233 46778889999999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++++|++|
T Consensus       313 -t~~ei~~~  320 (325)
T d1rjba_         313 -SFPNLTSF  320 (325)
T ss_dssp             -CHHHHHHH
T ss_pred             -CHHHHHHH
Confidence             55888765

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.6e-21  Score=152.29  Aligned_cols=133  Identities=12%  Similarity=0.151  Sum_probs=106.1

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCccccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++++|||+++.+....    ......||+.|||   |    |
T Consensus       111 ~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~---~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~A---P----E  180 (277)
T d1xbba_         111 ELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQH---YAKISDFGLSKALRADENYYKAQTHGKWPVKWYA---P----E  180 (277)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETT---EEEECCCTTCEECCTTCSEEEC----CCCGGGCC---H----H
T ss_pred             HHHHHHHHHHhhHHhCCcccCCCcchhhcccccC---cccccchhhhhhccccccccccccccCCCceecC---c----h
Confidence            3478999999999998     8999999999853   48999999998765432    2234679999999   9    9


Q ss_pred             chhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          80 MIINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        80 ~~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ++....|+.              ++ |.+||. +.+..++...+. .+ ..+.+|..+|+++.+||.+||..||.+||++
T Consensus       181 ~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~-~~~~~~~~~~i~-~~-~~~~~p~~~~~~~~~li~~cl~~dp~~RPs~  257 (277)
T d1xbba_         181 CINYYKFSSKSDVWSFGVLMWEAFSYGQKPYR-GMKGSEVTAMLE-KG-ERMGCPAGCPREMYDLMNLCWTYDVENRPGF  257 (277)
T ss_dssp             HHHHCEEEHHHHHHHHHHHHHHHHTTTCCSST-TCCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             hhcCCCCCchhhhccchhhhhHHhhCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCcccCHHHHHHHHHHcCCCHhHCcCH
Confidence            888776664              55 899999 888888888887 33 4678888999999999999999999999944


Q ss_pred             CCCChhhh---hcCCCCC
Q psy3184         145 QRGGIVDI---KKHKWFQ  159 (185)
Q Consensus       145 ~~~~~~~l---l~hp~f~  159 (185)
                           .++   |+|+|+.
T Consensus       258 -----~~i~~~L~~~~~~  270 (277)
T d1xbba_         258 -----AAVELRLRNYYYD  270 (277)
T ss_dssp             -----HHHHHHHHHHHHH
T ss_pred             -----HHHHHHhhCHHhh
Confidence                 666   5666653

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.9e-21  Score=154.28  Aligned_cols=138  Identities=17%  Similarity=0.253  Sum_probs=103.8

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccc
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      +..+.||+.||+|||++     ||||+|||++.+.   +++|+|||+++......    .....+||+.|+|   |    
T Consensus       112 ~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~---~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~a---P----  181 (345)
T d1pmea_         112 CYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTC---DLKICDFGLARVADPDHDHTGFLTEYVATRWYRA---P----  181 (345)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC---CEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCC---G----
T ss_pred             HHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCC---CEEEcccCceeeccCCCccceeeccccccceech---H----
Confidence            34588999999999998     8999999998853   49999999998764432    3455789999999   9    


Q ss_pred             cchhcc-Ccce--------------eccCCCCCCCCChHHHHHHHHhcCCC-----------------------cc----
Q psy3184          79 NMIINV-GIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID-----------------------KI----  116 (185)
Q Consensus        79 E~~~~~-~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~-----------------------~~----  116 (185)
                      |++... .|+.              ++|.+||. +.+..+...........                       ..    
T Consensus       182 E~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (345)
T d1pmea_         182 EIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP-GKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPW  260 (345)
T ss_dssp             GGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCH
T ss_pred             HHhhcCCCCCchhhhhccCceehHHhhCCCCCC-CCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCH
Confidence            877543 3443              99999998 77665554433210000                       00    


Q ss_pred             -CCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         117 -PFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       117 -~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                       .....+|+++++||.+||..||.+||     ++.++++||||+..
T Consensus       261 ~~~~~~~s~~~~~li~~~L~~dP~~R~-----ta~e~L~hpf~~~~  301 (345)
T d1pmea_         261 NRLFPNADSKALDLLDKMLTFNPHKRI-----EVEQALAHPYLEQY  301 (345)
T ss_dssp             HHHCTTSCHHHHHHHHHHSCSSTTTSC-----CHHHHHTSGGGTTT
T ss_pred             HHhCCCCCHHHHHHHHHHccCChhHCc-----CHHHHhcCHhhccC
Confidence             01135789999999999999999999     66999999999754

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.4e-21  Score=151.08  Aligned_cols=134  Identities=10%  Similarity=0.074  Sum_probs=107.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.+....    .....+||+.|||   |    |+
T Consensus       114 i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~---~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~a---P----E~  183 (285)
T d1u59a_         114 LLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRH---YAKISDFGLSKALGADDSYYTARSAGKWPLKWYA---P----EC  183 (285)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGGGEEEEETT---EEEECCCTTCEECTTCSCEECCCCSSCCCGGGCC---H----HH
T ss_pred             HHHHHHHHHHHHHhCCeecCcCchhheeeccCC---ceeeccchhhhcccccccccccccccccCccccC---h----HH
Confidence            478999999999997     8999999999853   49999999998775432    2234578999999   9    88


Q ss_pred             hhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +....|+.              ++ |..||. +.+..++...+. .+ ..+..|..+++++.+||.+||..||.+||++ 
T Consensus       184 ~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~-~~~~~~~~~~i~-~~-~~~~~p~~~~~~l~~li~~cl~~~p~~RPs~-  259 (285)
T d1u59a_         184 INFRKFSSRSDVWSYGVTMWEALSYGQKPYK-KMKGPEVMAFIE-QG-KRMECPPECPPELYALMSDCWIYKWEDRPDF-  259 (285)
T ss_dssp             HHHCEECHHHHHHHHHHHHHHHHTTSCCTTT-TCCTHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCH-
T ss_pred             HhCCCCCccchhhcchHHHHHHHhCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCcCCHHHHHHHHHHcCCCHhHCcCH-
Confidence            87766664              55 899999 777788888887 33 4677888999999999999999999999954 


Q ss_pred             CCChhhhhcCCCC
Q psy3184         146 RGGIVDIKKHKWF  158 (185)
Q Consensus       146 ~~~~~~ll~hp~f  158 (185)
                       .++.+.|+|+|+
T Consensus       260 -~~i~~~L~~~~~  271 (285)
T d1u59a_         260 -LTVEQRMRACYY  271 (285)
T ss_dssp             -HHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHH
Confidence             123334667765

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.5e-21  Score=151.50  Aligned_cols=128  Identities=13%  Similarity=0.112  Sum_probs=95.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   ++||+|||+++.....   ......+||+.|||   |    |++
T Consensus       139 ~~~qi~~gl~ylH~~~ivHrDlKp~NILl~~~~---~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~A---P----E~l  208 (299)
T d1ywna1         139 YSFQVAKGMEFLASRKCIHRDLAARNILLSEKN---VVKICDFGLARDIYKDPDYVRKGDARLPLKWMA---P----ETI  208 (299)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGG---CEEECC------CCSCTTSCCTTSCCCGGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCCcCCcCCccceeECCCC---cEEEccCcchhhccccccccccCceeeCccccc---h----hHh
Confidence            478999999999987     8999999998853   4999999999865432   23345689999999   9    988


Q ss_pred             hccCcce--------------ecc-CCCCCCCCChHHHH-HHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          82 INVGIDN--------------IFS-RPPFCVMNDPMQTY-NMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        82 ~~~~~~~--------------l~g-~~Pf~~~~~~~~~~-~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      .+..|+.              ++| .+||. +.+..+.+ ..+. .+ ..+..|..+++++++||.+||..||.+||   
T Consensus       209 ~~~~~~~~sDiwS~Gvil~ellt~~~~p~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~li~~cl~~dP~~Rp---  282 (299)
T d1ywna1         209 FDRVYTIQSDVWSFGVLLWEIFSLGASPYP-GVKIDEEFCRRLK-EG-TRMRAPDYTTPEMYQTMLDCWHGEPSQRP---  282 (299)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCSST-TCCCSHHHHHHHH-HT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC---
T ss_pred             hcCCCCcccceeehHHHHHHHHhCCCCCCC-CCCHHHHHHHHHh-cC-CCCCCCccCCHHHHHHHHHHcCCChhHCc---
Confidence            8777765              555 67888 65544444 4444 33 46778888999999999999999999999   


Q ss_pred             CCChhhhhcC
Q psy3184         146 RGGIVDIKKH  155 (185)
Q Consensus       146 ~~~~~~ll~h  155 (185)
                        ++.++++|
T Consensus       283 --t~~eil~~  290 (299)
T d1ywna1         283 --TFSELVEH  290 (299)
T ss_dssp             --CHHHHHHH
T ss_pred             --CHHHHHHH
Confidence              55998876

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.3e-20  Score=145.84  Aligned_cols=139  Identities=15%  Similarity=0.176  Sum_probs=105.4

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-ccccccCCccccccCCCcccccch
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      +....|++.||+|||++     ||||+||+++.+.   .++++|||.++...... ......+++.|+|   |    |++
T Consensus       104 ~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~---~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~---p----e~~  173 (292)
T d1unla_         104 KSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNG---ELKLANFGLARAFGIPVRCYSAEVVTLWYRP---P----DVL  173 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC---CEEECCCTTCEECCSCCSCCCSCCSCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhhcCCEeeecccCcccccccCC---ceeeeecchhhcccCCCccceeeccccchhh---h----hHh
Confidence            45588999999999998     8999999999853   48999999998775543 3445567888999   9    887


Q ss_pred             hccCc-ce--------------eccCCCCCCCCChHHHHHHHHhcCCC--------------------------ccCCCC
Q psy3184          82 INVGI-DN--------------IFSRPPFCVMNDPMQTYNMIINVGID--------------------------KIPFPK  120 (185)
Q Consensus        82 ~~~~~-~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~--------------------------~~~~p~  120 (185)
                      ....+ +.              ++|..||..+.+..+.+..+......                          ....+.
T Consensus       174 ~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (292)
T d1unla_         174 FGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVP  253 (292)
T ss_dssp             TTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTST
T ss_pred             ccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccc
Confidence            76543 33              78888865477777766665411100                          011224


Q ss_pred             CCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       121 ~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      .+|+++.+||++||..||.+||     +++++|+||||+++
T Consensus       254 ~~s~~~~dll~~mL~~dP~~R~-----sa~e~L~Hp~f~~~  289 (292)
T d1unla_         254 KLNATGRDLLQNLLKCNPVQRI-----SAEEALQHPYFSDF  289 (292)
T ss_dssp             TCCHHHHHHHHHHSCSSGGGSC-----CHHHHTTSGGGSSC
T ss_pred             cCCHHHHHHHHHHccCChhHCc-----CHHHHhcChhhcCC
Confidence            5789999999999999999999     66999999999753

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.1e-21  Score=148.97  Aligned_cols=132  Identities=14%  Similarity=0.175  Sum_probs=107.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.+....  ......||+.|||   |    |++.
T Consensus       114 i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~---~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~A---P----E~~~  183 (272)
T d1qpca_         114 MAAQIAEGMAFIEERNYIHRDLRAANILVSDTL---SCKIADFGLARLIEDNEYTAREGAKFPIKWTA---P----EAIN  183 (272)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS---CEEECCCTTCEECSSSCEECCTTCCCCTTTSC---H----HHHH
T ss_pred             HHHHHHHHHHHHHhCCcccCccchhheeeeccc---ceeeccccceEEccCCccccccccCCcccccC---h----HHHh
Confidence            488999999999997     8999999999863   39999999999775442  2334678999999   9    9887


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...|+.              ++ |.+||. ..+..++...+. .+ ..+..|..+++++.+||.+||..||.+||     
T Consensus       184 ~~~~~~~sDvwS~Gvvl~ellt~~~~~~~-~~~~~~~~~~i~-~~-~~~~~p~~~~~~l~~li~~cl~~~P~~Rp-----  255 (272)
T d1qpca_         184 YGTFTIKSDVWSFGILLTEIVTHGRIPYP-GMTNPEVIQNLE-RG-YRMVRPDNCPEELYQLMRLCWKERPEDRP-----  255 (272)
T ss_dssp             HCEECHHHHHHHHHHHHHHHHTTTCCSST-TCCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             CCCCCchhhhhhhHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-hc-CCCCCcccChHHHHHHHHHHcCCCHhHCc-----
Confidence            766665              66 466666 778888888887 33 46677888999999999999999999999     


Q ss_pred             Chhhhhc--CCCCC
Q psy3184         148 GIVDIKK--HKWFQ  159 (185)
Q Consensus       148 ~~~~ll~--hp~f~  159 (185)
                      ++.++++  |+||.
T Consensus       256 t~~ei~~~L~~~ft  269 (272)
T d1qpca_         256 TFDYLRSVLEDFFT  269 (272)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhhhhhh
Confidence            5589887  67764

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.2e-21  Score=153.25  Aligned_cols=136  Identities=15%  Similarity=0.207  Sum_probs=101.6

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchh
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      +..+.||+.||+|||++     ||||+||+++.+.   .++++|||.+...  .....+..||+.|+|   |    |++.
T Consensus       124 ~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~---~~kl~dfg~a~~~--~~~~~~~~g~~~y~a---p----E~~~  191 (348)
T d2gfsa1         124 QFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDC---ELKILDFGLARHT--DDEMTGYVATRWYRA---P----EIML  191 (348)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC---CEEECCC----CC--TGGGSSSCHHHHTSC---H----HHHT
T ss_pred             HHHHHHHHHHHHHHHhCCCcccccCCccccccccc---cccccccchhccc--CcccccccccccccC---c----hhhc
Confidence            44588999999999998     8999999999863   4899999998654  334456789999999   9    8766


Q ss_pred             ccCc-ce--------------eccCCCCCCCCChHHHHHHHHhcCCCc--------------------cCCC--------
Q psy3184          83 NVGI-DN--------------IFSRPPFCVMNDPMQTYNMIINVGIDK--------------------IPFP--------  119 (185)
Q Consensus        83 ~~~~-~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~--------------------~~~p--------  119 (185)
                      +..+ +.              ++|.+||. +.+.......+.......                    ...+        
T Consensus       192 ~~~~~~~~~DiwSlGv~l~~ll~g~~pF~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (348)
T d2gfsa1         192 NWMHYNQTVDIWSVGCIMAELLTGRTLFP-GTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVF  270 (348)
T ss_dssp             TCSCCCTTHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHS
T ss_pred             CCccCCcccchhhhhHHHHHHHhCCCCCC-CCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhc
Confidence            5443 32              89999999 887776666654211000                    0111        


Q ss_pred             CCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCC
Q psy3184         120 KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF  161 (185)
Q Consensus       120 ~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~  161 (185)
                      ..+|+++++||++||..||.+||     ++.++++||||+..
T Consensus       271 ~~~s~~~~dli~~mL~~dP~~R~-----ta~elL~Hp~f~~~  307 (348)
T d2gfsa1         271 IGANPLAVDLLEKMLVLDSDKRI-----TAAQALAHAYFAQY  307 (348)
T ss_dssp             TTCCHHHHHHHHHHSCSSGGGSC-----CHHHHHTSGGGTTT
T ss_pred             CCCCHHHHHHHHHHCcCChhhCc-----CHHHHhcCHhhCCC
Confidence            25799999999999999999999     66999999999864

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7e-21  Score=148.09  Aligned_cols=128  Identities=15%  Similarity=0.184  Sum_probs=96.2

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC--cccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG--KILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~--~~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .++|+|||+++.....  .......||+.|+|   |    |++.
T Consensus       113 ~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~---~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~a---p----E~l~  182 (273)
T d1mp8a_         113 YAYQLSTALAYLESKRFVHRDIAARNVLVSSND---CVKLGDFGLSRYMEDSTYYKASKGKLPIKWMA---P----ESIN  182 (273)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETT---EEEECC-------------------CCGGGCC---H----HHHH
T ss_pred             HHHHHHHHhhhhcccCeeccccchhheeecCCC---cEEEccchhheeccCCcceeccceecCcccch---h----hHhc
Confidence            478999999999998     8999999999853   4999999999866443  23345678999999   9    9888


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...|+.              ++ |.+||. +.+..++...+. .+ ..+.+|..+|+++++||.+||..||.+||     
T Consensus       183 ~~~~~~~~DiwSlGvil~e~lt~g~~P~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~~~~li~~cl~~dp~~Rp-----  254 (273)
T d1mp8a_         183 FRRFTSASDVWMFGVCMWEILMHGVKPFQ-GVKNNDVIGRIE-NG-ERLPMPPNCPPTLYSLMTKCWAYDPSRRP-----  254 (273)
T ss_dssp             HCCCSHHHHHHHHHHHHHHHHTTSCCTTT-TCCGGGHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             cCCCCCccccccchHHHHHHHhcCCCCCC-CCCHHHHHHHHH-cC-CCCCCCCCCCHHHHHHHHHHcCCCHhHCc-----
Confidence            777765              55 899999 888888888888 33 45678889999999999999999999999     


Q ss_pred             ChhhhhcC
Q psy3184         148 GIVDIKKH  155 (185)
Q Consensus       148 ~~~~ll~h  155 (185)
                      ++.+++.|
T Consensus       255 s~~ei~~~  262 (273)
T d1mp8a_         255 RFTELKAQ  262 (273)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            55888765

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=146.99  Aligned_cols=129  Identities=16%  Similarity=0.132  Sum_probs=94.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   ++||+|||+++.....   ....+.+||+.|||   |    |++
T Consensus       109 i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~---~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~A---P----E~l  178 (276)
T d1uwha_         109 IARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDL---TVKIGDFGLATVKSRWSGSHQFEQLSGSILWMA---P----EVI  178 (276)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTS---SEEECCCCCSCC------------CCCCGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHhcCCEeccccCHHHEEEcCCC---CEEEccccceeeccccCCcccccccccCcccCC---H----HHH
Confidence            478999999999998     8999999998863   4999999999765432   23456789999999   9    887


Q ss_pred             hcc---Ccce--------------eccCCCCCCCCChH-HHHHHHHhcCCCcc---CCCCCCCHHHHHHHHHHhhcCcCc
Q psy3184          82 INV---GIDN--------------IFSRPPFCVMNDPM-QTYNMIINVGIDKI---PFPKHVTRTAQSLIKALCKESPAE  140 (185)
Q Consensus        82 ~~~---~~~~--------------l~g~~Pf~~~~~~~-~~~~~i~~~~~~~~---~~p~~~s~~~~~li~~~l~~dp~~  140 (185)
                      ...   .|+.              ++|..||. +.+.. .....+. .+...+   ..+..+++++.+||.+||..||.+
T Consensus       179 ~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~-~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~  256 (276)
T d1uwha_         179 RMQDKNPYSFQSDVYAFGIVLYELMTGQLPYS-NINNRDQIIFMVG-RGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDE  256 (276)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTT-TCCCHHHHHHHHH-HTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             hcccCCCCCchhhhhhhHHHHHHHHHCCCCCC-CCChHHHHHHHHh-cCCCCCcchhccccchHHHHHHHHHHcCCCHhH
Confidence            642   3443              89999998 65544 4444444 332222   345678999999999999999999


Q ss_pred             ccCCCCCChhhhhcC
Q psy3184         141 RLGYQRGGIVDIKKH  155 (185)
Q Consensus       141 R~~~~~~~~~~ll~h  155 (185)
                      ||     ++.+++.+
T Consensus       257 RP-----t~~~il~~  266 (276)
T d1uwha_         257 RP-----LFPQILAS  266 (276)
T ss_dssp             SC-----CHHHHHHH
T ss_pred             Cc-----CHHHHHHH
Confidence            99     55888765

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.1e-20  Score=144.54  Aligned_cols=128  Identities=14%  Similarity=0.110  Sum_probs=107.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++++.   .++|+|||+++.+....  ......||+.|+|   |    |++.
T Consensus       105 i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~---~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~a---P----E~~~  174 (258)
T d1k2pa_         105 MCKDVCEAMEYLESKQFLHRDLAARNCLVNDQG---VVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSP---P----EVLM  174 (258)
T ss_dssp             HHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTC---CEEECCCSSCCBCSSSSCCCCCCSCCCGGGCC---H----HHHH
T ss_pred             HHHHHHHHHHHHhhcCcccccccceeEEEcCCC---cEEECcchhheeccCCCceeecccCCCCCcCC---c----HHhc
Confidence            478999999999998     8899999999853   48999999998664432  2334678999999   9    9888


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...|+.              ++ |+.||. +.+..++...+. .+ ..+..|...++++++||++||..||.+||     
T Consensus       175 ~~~~~~ksDiwS~G~~l~el~t~g~~Pf~-~~~~~~~~~~i~-~~-~~~~~p~~~~~~l~~li~~cl~~dP~~RP-----  246 (258)
T d1k2pa_         175 YSKFSSKSDIWAFGVLMWEIYSLGKMPYE-RFTNSETAEHIA-QG-LRLYRPHLASEKVYTIMYSCWHEKADERP-----  246 (258)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TSCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHTTCSSGGGSC-----
T ss_pred             CCCCCcceeecccchhhHhHHhcCCCCCC-CCCHHHHHHHHH-hC-CCCCCcccccHHHHHHHHHHccCCHhHCc-----
Confidence            777775              55 899999 888888888888 43 46778888999999999999999999999     


Q ss_pred             ChhhhhcC
Q psy3184         148 GIVDIKKH  155 (185)
Q Consensus       148 ~~~~ll~h  155 (185)
                      +++++++|
T Consensus       247 t~~eil~~  254 (258)
T d1k2pa_         247 TFKILLSN  254 (258)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            55988876

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.9e-20  Score=145.69  Aligned_cols=133  Identities=14%  Similarity=0.179  Sum_probs=102.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++++.   .++|+|||+++......  ......||+.|+|   |    |++.
T Consensus       118 i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~---~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~a---P----E~~~  187 (285)
T d1fmka3         118 MAAQIASGMAYVERMNYVHRDLRAANILVGENL---VCKVADFGLARLIEDNEYTARQGAKFPIKWTA---P----EAAL  187 (285)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG---CEEECCCCTTC--------------CCGGGSC---H----HHHH
T ss_pred             HHHHHHHHHHHHhhhheecccccceEEEECCCC---cEEEcccchhhhccCCCceeeccccccccccC---h----HHHh
Confidence            488999999999998     8999999999863   39999999998664332  2334679999999   9    8888


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...|+.              ++ |.+|+. +.+..+++..+. .+ ..+..|..++.++++||.+||..||.+||     
T Consensus       188 ~~~~~~ksDI~S~Giil~el~t~~~p~~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~l~~li~~cl~~dP~~Rp-----  259 (285)
T d1fmka3         188 YGRFTIKSDVWSFGILLTELTTKGRVPYP-GMVNREVLDQVE-RG-YRMPCPPECPESLHDLMCQCWRKEPEERP-----  259 (285)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTTCCSST-TCCHHHHHHHHH-TT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             CCCCCcHHhhhcchHHHHHHHhCCCCCCC-CCCHHHHHHHHH-hc-CCCCCCcccCHHHHHHHHHHcccCHhHCc-----
Confidence            776665              55 455666 788888888887 33 35677889999999999999999999999     


Q ss_pred             Chhhhhc--CCCCCC
Q psy3184         148 GIVDIKK--HKWFQG  160 (185)
Q Consensus       148 ~~~~ll~--hp~f~~  160 (185)
                      ++++++.  ++||..
T Consensus       260 s~~~i~~~L~~~~~~  274 (285)
T d1fmka3         260 TFEYLQAFLEDYFTS  274 (285)
T ss_dssp             CHHHHHHHHHTTTSC
T ss_pred             CHHHHHHHHhhhhcC
Confidence            5599887  888865

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=3.4e-20  Score=146.15  Aligned_cols=127  Identities=13%  Similarity=0.072  Sum_probs=93.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcc------cccccCCccccccCCCcccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI------LRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~------~~~~~gt~~y~a~~~P~~~~   78 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   .+||+|||+++.+.....      .....||+.|||   |    
T Consensus       133 i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~---~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~a---P----  202 (299)
T d1jpaa_         133 MLRGIAAGMKYLADMNYVHRDLAARNILVNSNL---VCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTA---P----  202 (299)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC---CEEECCC-----------------------CGGGSC---H----
T ss_pred             HHHHHHHHHHHHhhCCCccCccccceEEECCCC---cEEECCcccceEccCCCCcceeeecccccCCccccC---H----
Confidence            478999999999998     8999999999863   399999999987654321      122467899999   9    


Q ss_pred             cchhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccC
Q psy3184          79 NMIINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG  143 (185)
Q Consensus        79 E~~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~  143 (185)
                      |++....|+.              ++ |..||. +.+..++...+. .+ ..+..|..++.++.+||.+||..||.+|| 
T Consensus       203 E~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~l~~li~~cl~~~P~~RP-  278 (299)
T d1jpaa_         203 EAIQYRKFTSASDVWSYGIVMWEVMSYGERPYW-DMTNQDVINAIE-QD-YRLPPPMDCPSALHQLMLDCWQKDRNHRP-  278 (299)
T ss_dssp             HHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TCCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSTTTSC-
T ss_pred             HHHhcCCCCcccccccchHHHHHHHhCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCccchHHHHHHHHHHcCCCHhHCc-
Confidence            9888776665              55 899999 888888888887 33 35667788999999999999999999999 


Q ss_pred             CCCCChhhhhc
Q psy3184         144 YQRGGIVDIKK  154 (185)
Q Consensus       144 ~~~~~~~~ll~  154 (185)
                          ++.++++
T Consensus       279 ----s~~ei~~  285 (299)
T d1jpaa_         279 ----KFGQIVN  285 (299)
T ss_dssp             ----CHHHHHH
T ss_pred             ----CHHHHHH
Confidence                4466654

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.3e-20  Score=144.56  Aligned_cols=128  Identities=16%  Similarity=0.178  Sum_probs=96.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   ++||+|||+++......  ......||+.|||   |    |++.
T Consensus       106 i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~---~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~a---P----E~l~  175 (263)
T d1sm2a_         106 MCLDVCEGMAYLEEACVIHRDLAARNCLVGENQ---VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWAS---P----EVFS  175 (263)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGG---CEEECSCC------------------CTTSCC---H----HHHT
T ss_pred             HHHHHHHHHHhhhccceeecccchhheeecCCC---CeEecccchheeccCCCceeecceecCcccCC---h----HHhc
Confidence            588999999999998     8999999999863   49999999998664432  2334678999999   9    9888


Q ss_pred             ccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCC
Q psy3184          83 NVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG  147 (185)
Q Consensus        83 ~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~  147 (185)
                      ...|+.              ++ |.+||. +.+..++...+.+ + ..+..|..+++++.+|+.+||..||.+||     
T Consensus       176 ~~~~~~k~DVwS~Gvil~el~t~~~~~~~-~~~~~~~~~~i~~-~-~~~~~p~~~~~~l~~li~~cl~~~p~~Rp-----  247 (263)
T d1sm2a_         176 FSRYSSKSDVWSFGVLMWEVFSEGKIPYE-NRSNSEVVEDIST-G-FRLYKPRLASTHVYQIMNHCWKERPEDRP-----  247 (263)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHTTSCCTTC-SCCHHHHHHHHHH-T-CCCCCCTTSCHHHHHHHHHHTCSSGGGSC-----
T ss_pred             CCCCCchhhhcchHHHHHHHHHCCCCCCC-CCCHHHHHHHHHh-c-CCCCCccccCHHHHHHHHHHccCCHhHCc-----
Confidence            777775              55 577777 8888888888873 3 46677888999999999999999999999     


Q ss_pred             ChhhhhcC
Q psy3184         148 GIVDIKKH  155 (185)
Q Consensus       148 ~~~~ll~h  155 (185)
                      +++++++|
T Consensus       248 s~~~il~~  255 (263)
T d1sm2a_         248 AFSRLLRQ  255 (263)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            55888775

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-20  Score=149.92  Aligned_cols=128  Identities=9%  Similarity=0.074  Sum_probs=103.1

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.||+|||++     ||||+||+++++.   .++|+|||+++......   ......||+.|||   |    |++
T Consensus       116 i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~---~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~A---P----E~l  185 (317)
T d1xkka_         116 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQ---HVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMA---L----ESI  185 (317)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETT---EEEECCCSHHHHTTTTCC--------CCTTTSC---H----HHH
T ss_pred             HHHHHHHHHHHHHHcCcccCcchhhcceeCCCC---CeEeeccccceecccccccccccccccCccccC---h----HHH
Confidence            478999999999998     8999999999863   49999999998664432   2334578999999   9    988


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..|+.              ++ |.+||. +.+..++...+. .+ ..+..|..+++++.+||.+||..||.+||    
T Consensus       186 ~~~~~~~~sDvwS~Gvil~el~t~g~~p~~-~~~~~~~~~~i~-~~-~~~~~p~~~~~~~~~li~~cl~~dP~~RP----  258 (317)
T d1xkka_         186 LHRIYTHQSDVWSYGVTVWELMTFGSKPYD-GIPASEISSILE-KG-ERLPQPPICTIDVYMIMVKCWMIDADSRP----  258 (317)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TSCGGGHHHHHH-HT-CCCCCCTTBCHHHHHHHHHHTCSSGGGSC----
T ss_pred             hcCCCChhhhhhhHHHHHHHHHHCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCcccCHHHHHHHHHhCCCChhhCc----
Confidence            8777775              55 899998 888888877776 33 45778888999999999999999999999    


Q ss_pred             CChhhhhcC
Q psy3184         147 GGIVDIKKH  155 (185)
Q Consensus       147 ~~~~~ll~h  155 (185)
                       ++.+++.|
T Consensus       259 -s~~eil~~  266 (317)
T d1xkka_         259 -KFRELIIE  266 (317)
T ss_dssp             -CHHHHHHH
T ss_pred             -CHHHHHHH
Confidence             55888877

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=3e-20  Score=145.68  Aligned_cols=128  Identities=13%  Similarity=0.120  Sum_probs=100.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--ccccccCCccccccCCCcccccchh
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--ILRLLSGRPPFCVMNDPMQTYNMII   82 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--~~~~~~gt~~y~a~~~P~~~~E~~~   82 (185)
                      .+.||+.||+|||++     ||||+||+++.+.   ++||+|||+++......  ......|++.|||   |    |++.
T Consensus       120 i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~---~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~a---P----E~~~  189 (287)
T d1opja_         120 MATQISSAMEYLEKKNFIHRDLAARNCLVGENH---LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA---P----ESLA  189 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG---CEEECCCCCTTTCCSSSSEEETTEEECGGGCC---H----HHHH
T ss_pred             HHHHHHHHHHHHHHCCcccCccccCeEEECCCC---cEEEccccceeecCCCCceeeccccccccccC---h----HHHc
Confidence            467999999999998     8999999998853   49999999998664432  2233458899999   9    9888


Q ss_pred             ccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          83 NVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        83 ~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ...|+.              ++|..||..+.+..++...+. .+ ..+.+|..+|+++++||.+||..||.+||     +
T Consensus       190 ~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~-~~-~~~~~~~~~~~~l~~li~~cl~~dP~~Rp-----s  262 (287)
T d1opja_         190 YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLE-KD-YRMERPEGCPEKVYELMRACWQWNPSDRP-----S  262 (287)
T ss_dssp             HCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC-----C
T ss_pred             CCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHh-cC-CCCCCCccchHHHHHHHHHHcCCCHhHCc-----C
Confidence            777775              665555442777777777666 32 46778889999999999999999999999     5


Q ss_pred             hhhhhc
Q psy3184         149 IVDIKK  154 (185)
Q Consensus       149 ~~~ll~  154 (185)
                      +.++++
T Consensus       263 ~~ei~~  268 (287)
T d1opja_         263 FAEIHQ  268 (287)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            588865

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=2.6e-20  Score=145.03  Aligned_cols=125  Identities=14%  Similarity=0.172  Sum_probs=92.5

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC----cccccccCCccccccCCCccccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG----KILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~----~~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   .++++|||.++.....    ....+.+||+.|||   |    |
T Consensus       115 ~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~---~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~a---P----E  184 (277)
T d1o6ya_         115 EVIADACQALNFSHQNGIIHRDVKPANIMISATN---AVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLS---P----E  184 (277)
T ss_dssp             HHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTS---CEEECCCTTCEECC----------------TTCC---H----H
T ss_pred             HHHHHHHHHHHHHHhCCccCccccCcccccCccc---cceeehhhhhhhhccccccccccccccCcccccC---H----H
Confidence            3478999999999998     8999999998853   3899999998765432    23456789999999   9    8


Q ss_pred             chhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCC-ccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          80 MIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGID-KIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        80 ~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~-~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ++.+..|+.              ++|.+||. +.+..+....+.+.+.. ....+..+|+++++||.+||..||.+||+.
T Consensus       185 ~~~~~~~~~~~DiwSlGvilyelltG~~Pf~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~s  263 (277)
T d1o6ya_         185 QARGDSVDARSDVYSLGCVLYEVLTGEPPFT-GDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQT  263 (277)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHHHHSSCSCC-CSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSS
T ss_pred             HHcCCCCCcceecccchHHHHHHHhCCCCCC-CcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCHhH
Confidence            888777775              99999999 88888887777632211 113335799999999999999999999944

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.4e-20  Score=141.85  Aligned_cols=128  Identities=13%  Similarity=0.207  Sum_probs=102.1

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCccccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      ..+.||+.||+|||++     ||||+||+++++.   .++|+|||+++......    ......|+..|+|   |    |
T Consensus       115 ~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~---~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~a---P----E  184 (273)
T d1u46a_         115 RYAVQVAEGMGYLESKRFIHRDLAARNLLLATRD---LVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCA---P----E  184 (273)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETT---EEEECCCTTCEECCC-CCEEEC-----CCGGGCC---H----H
T ss_pred             HHHHHHHHHHHHhhhCCEeeeeecHHHhcccccc---ceeeccchhhhhcccCCCcceecCccccCcccCC---H----H
Confidence            3478999999999998     8999999999863   59999999998765432    2234567889999   9    9


Q ss_pred             chhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          80 MIINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        80 ~~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      ++....|+.              ++ |..||. +.+..+...++. .....+..|..+|+++++||.+||..||.+||  
T Consensus       185 ~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RP--  260 (273)
T d1u46a_         185 SLKTRTFSHASDTWMFGVTLWEMFTYGQEPWI-GLNGSQILHKID-KEGERLPRPEDCPQDIYNVMVQCWAHKPEDRP--  260 (273)
T ss_dssp             HHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTT-TCCHHHHHHHHH-TSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSC--
T ss_pred             HHhCCCCCcchhhhhhHHHHHHHHhCCCCCCC-CcCHHHHHHHHH-hCCCCCCCcccccHHHHHHHHHHcCCChhHCc--
Confidence            888766665              55 899999 999999998887 33345667788999999999999999999999  


Q ss_pred             CCCChhhhh
Q psy3184         145 QRGGIVDIK  153 (185)
Q Consensus       145 ~~~~~~~ll  153 (185)
                         ++.+|+
T Consensus       261 ---t~~ei~  266 (273)
T d1u46a_         261 ---TFVALR  266 (273)
T ss_dssp             ---CHHHHH
T ss_pred             ---CHHHHH
Confidence               447765

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.1e-20  Score=148.46  Aligned_cols=151  Identities=15%  Similarity=0.173  Sum_probs=104.4

Q ss_pred             cccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc--------ccccccCCccccccCCC
Q psy3184           8 NLDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK--------ILRLLSGRPPFCVMNDP   74 (185)
Q Consensus         8 ~~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~--------~~~~~~gt~~y~a~~~P   74 (185)
                      ...+.|++.||+|||++     ||||+||++........++++|||+++.+....        ...+.+||+.|||   |
T Consensus       106 ~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~a---P  182 (299)
T d1ckia_         106 LLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYAS---I  182 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCC---H
T ss_pred             HHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccC---H
Confidence            34578999999999998     899999998764334459999999999775432        2345689999999   9


Q ss_pred             cccccchhccCcce--------------eccCCCCCCCCChHHHHHHHHh--cC---CCccCCCCCCCHHHHHHHHHHhh
Q psy3184          75 MQTYNMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIIN--VG---IDKIPFPKHVTRTAQSLIKALCK  135 (185)
Q Consensus        75 ~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~--~~---~~~~~~p~~~s~~~~~li~~~l~  135 (185)
                          |++.+..|+.              ++|..||. +.+.......+..  ..   ......+..+|+++.+|+.+|+.
T Consensus       183 ----E~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~  257 (299)
T d1ckia_         183 ----NTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQ-GLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRS  257 (299)
T ss_dssp             ----HHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTC-CCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHH
T ss_pred             ----HHHhCCCCCChhhEEecCHHHHHHHhCCCccc-ccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHHHcc
Confidence                9888877765              99999998 5444332222110  00   01122335789999999999999


Q ss_pred             cCcCcccCCCCCChhhhhcCCCC-------CCCChhhhhc
Q psy3184         136 ESPAERLGYQRGGIVDIKKHKWF-------QGFDWDGLRN  168 (185)
Q Consensus       136 ~dp~~R~~~~~~~~~~ll~hp~f-------~~~~~~~~~~  168 (185)
                      .||.+||++  ..+.++++|+|.       ..+||..++.
T Consensus       258 ~~p~~RP~~--~~i~~~l~~~~~~~~~~~~~~~Dw~~~~~  295 (299)
T d1ckia_         258 LRFDDKPDY--SYLRQLFRNLFHRQGFSYDYVFDWNMLKF  295 (299)
T ss_dssp             SCTTCCCCH--HHHHHHHHHHHHHHTCCCSCCCHHHHGGG
T ss_pred             CChhHCcCH--HHHHHHHHHHHHHcCCCCCCCcCchhhcC
Confidence            999999965  123455666543       3356766543

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.7e-19  Score=140.97  Aligned_cols=127  Identities=15%  Similarity=0.112  Sum_probs=94.8

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc----ccccccCCccccccCCCcccccc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK----ILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~----~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      .+.||+.|++|||++     ||||+||+++.+.   .+||+|||+++.+....    ......||+.|||   |    |+
T Consensus       115 i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~---~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~A---P----E~  184 (283)
T d1mqba_         115 MLRGIAAGMKYLANMNYVHRDLAARNILVNSNL---VCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTA---P----EA  184 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC---CEEECCCCC-----------------CCCGGGSC---H----HH
T ss_pred             HHHHHHHhhhhccccccccCccccceEEECCCC---eEEEcccchhhcccCCCccceEeccCCCCccccC---H----HH
Confidence            478999999999997     8999999999864   49999999998764432    2234578999999   9    98


Q ss_pred             hhccCcce--------------ecc-CCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IFS-RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~g-~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +....|+.              ++| .+|+. ..+..+++..+. .+ ..+..|..++.++.+||.+||..||.+||+  
T Consensus       185 l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~l~~li~~cl~~~p~~RPt--  259 (283)
T d1mqba_         185 ISYRKFTSASDVWSFGIVMWEVMTYGERPYW-ELSNHEVMKAIN-DG-FRLPTPMDCPSAIYQLMMQCWQQERARRPK--  259 (283)
T ss_dssp             HHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT-TCCHHHHHHHHH-TT-CCCCCCTTCBHHHHHHHHHHTCSSTTTSCC--
T ss_pred             HccCCCCCcccccccHHHHHHHHhCCCCccc-cCCHHHHHHHHh-cc-CCCCCchhhHHHHHHHHHHHCcCCHhHCcC--
Confidence            88777665              554 55555 777788888777 33 466777889999999999999999999994  


Q ss_pred             CCChhhhhc
Q psy3184         146 RGGIVDIKK  154 (185)
Q Consensus       146 ~~~~~~ll~  154 (185)
                         +.++++
T Consensus       260 ---~~eil~  265 (283)
T d1mqba_         260 ---FADIVS  265 (283)
T ss_dssp             ---HHHHHH
T ss_pred             ---HHHHHH
Confidence               477764

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.8e-20  Score=144.90  Aligned_cols=128  Identities=13%  Similarity=0.089  Sum_probs=104.9

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhcc
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIINV   84 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~~   84 (185)
                      .+.||+.||.|+|++     ||||+|||++.+.   .++|+|||+++............||+.|+|   |    |++...
T Consensus       132 ~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~---~~kl~DfG~a~~~~~~~~~~~~~gt~~y~a---P----E~l~~~  201 (309)
T d1fvra_         132 FAADVARGMDYLSQKQFIHRDLAARNILVGENY---VAKIADFGLSRGQEVYVKKTMGRLPVRWMA---I----ESLNYS  201 (309)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGGEEECGGG---CEEECCTTCEESSCEECCC----CCTTTCC---H----HHHHHC
T ss_pred             HHHHHHHHHHhhhcCCccccccccceEEEcCCC---ceEEccccccccccccccccceecCCcccc---h----HHhccC
Confidence            478999999999997     8999999999863   489999999986655445556789999999   9    988877


Q ss_pred             Ccce--------------ecc-CCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCCh
Q psy3184          85 GIDN--------------IFS-RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI  149 (185)
Q Consensus        85 ~~~~--------------l~g-~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~  149 (185)
                      .|+.              ++| .+||. +.+..++...+. .+ ..+.+|..+++++++||.+||..||.+||     ++
T Consensus       202 ~~~~~sDvwSfGvil~ell~~~~~p~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~~~~li~~cl~~dP~~RP-----s~  273 (309)
T d1fvra_         202 VYTTNSDVWSYGVLLWEIVSLGGTPYC-GMTCAELYEKLP-QG-YRLEKPLNCDDEVYDLMRQCWREKPYERP-----SF  273 (309)
T ss_dssp             EECHHHHHHHHHHHHHHHHTTSCCTTT-TCCHHHHHHHGG-GT-CCCCCCTTBCHHHHHHHHHHTCSSGGGSC-----CH
T ss_pred             CCCccceeehhHHHHHHHHhcCCCCCC-CCCHHHHHHHHH-hc-CCCCCCccCCHHHHHHHHHHcCCChhHCc-----CH
Confidence            7765              665 56788 889999988887 33 46778888999999999999999999999     55


Q ss_pred             hhhhcC
Q psy3184         150 VDIKKH  155 (185)
Q Consensus       150 ~~ll~h  155 (185)
                      .++++|
T Consensus       274 ~eil~~  279 (309)
T d1fvra_         274 AQILVS  279 (309)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999876

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2e-19  Score=141.56  Aligned_cols=128  Identities=13%  Similarity=0.144  Sum_probs=107.0

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ..+.||+.||+|||++     ||||+|||++.+.   .++|+|||.++.....   ......+|++.|+|   |    |+
T Consensus       139 ~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a---P----E~  208 (299)
T d1fgka_         139 SCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN---VMKIADFGLARDIHHIDYYKKTTNGRLPVKWMA---P----EA  208 (299)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTC---CEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSC---H----HH
T ss_pred             HHHHHHHHHHHHhhhCCEEeeeecccceeecCCC---CeEeccchhhccccccccccccccCCCChhhhh---h----hH
Confidence            4578999999999997     8999999999863   3899999999866443   23445789999999   9    98


Q ss_pred             hhccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +.+..|+.              ++ |.+||. +.+..+++..+. .+ ..+..|..+|+++++||.+||..||.+||   
T Consensus       209 l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~-~~~~~~~~~~i~-~~-~~~~~p~~~~~~l~~li~~cl~~dP~~Rp---  282 (299)
T d1fgka_         209 LFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP-GVPVEELFKLLK-EG-HRMDKPSNCTNELYMMMRDCWHAVPSQRP---  282 (299)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTSCCSST-TCCHHHHHHHHH-TT-CCCCCCSSCCHHHHHHHHHHTCSSGGGSC---
T ss_pred             hcCCCCCchhhhHHhHHHHHHhccCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCccchHHHHHHHHHHccCCHhHCc---
Confidence            88877776              54 799998 888888888887 33 56788889999999999999999999999   


Q ss_pred             CCChhhhhc
Q psy3184         146 RGGIVDIKK  154 (185)
Q Consensus       146 ~~~~~~ll~  154 (185)
                        ++.++++
T Consensus       283 --s~~eil~  289 (299)
T d1fgka_         283 --TFKQLVE  289 (299)
T ss_dssp             --CHHHHHH
T ss_pred             --CHHHHHH
Confidence              5588765

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.2e-19  Score=142.87  Aligned_cols=128  Identities=13%  Similarity=0.101  Sum_probs=103.0

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecC---cccccccCCccccccCCCcccccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDG---KILRLLSGRPPFCVMNDPMQTYNM   80 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~---~~~~~~~gt~~y~a~~~P~~~~E~   80 (185)
                      ..+.||+.||+|||++     ||||+||+++.+.   ++||+|||+++.+...   ....+.+||+.|+|   |    |+
T Consensus       144 ~i~~qi~~gl~ylH~~~ivHrDlKp~NILld~~~---~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~a---P----E~  213 (301)
T d1lufa_         144 CIARQVAAGMAYLSERKFVHRDLATRNCLVGENM---VVKIADFGLSRNIYSADYYKADGNDAIPIRWMP---P----ES  213 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG---CEEECCCSCHHHHTGGGCBC----CCBCGGGCC---H----HH
T ss_pred             HHHHHHHHHhhhcccCCeEeeEEcccceEECCCC---cEEEccchhheeccCCccccccCCCCcCcCcCC---H----HH
Confidence            3488999999999997     8999999999863   4999999999765433   22345688999999   9    98


Q ss_pred             hhccCcce--------------ecc-CCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCC
Q psy3184          81 IINVGIDN--------------IFS-RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQ  145 (185)
Q Consensus        81 ~~~~~~~~--------------l~g-~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~  145 (185)
                      +....|+.              ++| .+||. +.+..++...+. .+ ..+.+|..+++++.+||.+||..||.+||   
T Consensus       214 ~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~-~~~~~e~~~~v~-~~-~~~~~p~~~~~~~~~li~~cl~~~P~~RP---  287 (301)
T d1lufa_         214 IFYNRYTTESDVWAYGVVLWEIFSYGLQPYY-GMAHEEVIYYVR-DG-NILACPENCPLELYNLMRLCWSKLPADRP---  287 (301)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT-TSCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC---
T ss_pred             HccCCCChhhhhccchhhHHHHHccCCCCCC-CCCHHHHHHHHH-cC-CCCCCCccchHHHHHHHHHHcCCChhHCc---
Confidence            88877775              566 57888 888889888887 44 35677889999999999999999999999   


Q ss_pred             CCChhhhhc
Q psy3184         146 RGGIVDIKK  154 (185)
Q Consensus       146 ~~~~~~ll~  154 (185)
                        ++.+|++
T Consensus       288 --t~~ev~~  294 (301)
T d1lufa_         288 --SFCSIHR  294 (301)
T ss_dssp             --CHHHHHH
T ss_pred             --CHHHHHH
Confidence              4577743

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=4.5e-20  Score=148.17  Aligned_cols=156  Identities=13%  Similarity=0.143  Sum_probs=105.3

Q ss_pred             ccHHHHHHHHHHHhh-c-----CCCCCceEEccCCCC---CeeEEcccCceeEeecCcccccccCCccccccCCCccccc
Q psy3184           9 LDTLQVKEMVESMHQ-A-----EYKADNYVITEGEAG---NDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYN   79 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~-~-----~lkp~Nili~~~~~~---~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E   79 (185)
                      ....||+.|++|||+ .     ||||+||+++.+...   ..++++|||.+....  ......+||+.|+|   |    |
T Consensus       129 ~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~--~~~~~~~gt~~y~a---P----E  199 (362)
T d1q8ya_         129 QISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYD--EHYTNSIQTREYRS---P----E  199 (362)
T ss_dssp             HHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETT--BCCCSCCSCGGGCC---H----H
T ss_pred             HHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEeecccccccc--cccccccccccccC---h----h
Confidence            457899999999998 4     899999999864221   238999999987543  33456789999999   9    9


Q ss_pred             chhccCcce--------------eccCCCCCCCCChH------HHHHHHH-hcCC-------------------------
Q psy3184          80 MIINVGIDN--------------IFSRPPFCVMNDPM------QTYNMII-NVGI-------------------------  113 (185)
Q Consensus        80 ~~~~~~~~~--------------l~g~~Pf~~~~~~~------~~~~~i~-~~~~-------------------------  113 (185)
                      ++....|+.              ++|..||. ..+..      .....+. .-|.                         
T Consensus       200 ~~~~~~~~~~~DiwSlG~il~el~~g~~pF~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (362)
T d1q8ya_         200 VLLGAPWGCGADIWSTACLIFELITGDFLFE-PDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNI  278 (362)
T ss_dssp             HHHTCCCCTHHHHHHHHHHHHHHHHSSCCC----------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSC
T ss_pred             hccccCCCccccccchHHHHHHHHHCCCCCC-CCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhcc
Confidence            888777765              88999997 43321      1111100 0000                         


Q ss_pred             -------------CccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCChhhhhcCCCCCCCChhhhhcccCCCCccCCCC
Q psy3184         114 -------------DKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS  180 (185)
Q Consensus       114 -------------~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~~~~~~p~~p~~~  180 (185)
                                   ....++...++++++||.+||..||.+||     +++++|+||||++..+    ...+..|..+...
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rp-----ta~e~L~Hp~f~~~~~----~~~~~~p~~~~~~  349 (362)
T d1q8ya_         279 SKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA-----DAGGLVNHPWLKDTLG----MEEIRVPDRELYG  349 (362)
T ss_dssp             CCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB-----CHHHHHTCGGGTTCTT----CTTCCCTTSCTTC
T ss_pred             ccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCc-----CHHHHhcCcccCCCCC----cccCCCCCcccCC
Confidence                         01112223578899999999999999999     6699999999996543    2344555555555


Q ss_pred             CCC
Q psy3184         181 ILR  183 (185)
Q Consensus       181 ~~~  183 (185)
                      +.+
T Consensus       350 ~~~  352 (362)
T d1q8ya_         350 SGS  352 (362)
T ss_dssp             BST
T ss_pred             CCC
Confidence            443

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.4e-19  Score=143.14  Aligned_cols=133  Identities=11%  Similarity=0.092  Sum_probs=108.0

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.|++.||.|||++     ||||+|||++.+.   +++|+|||+++.+....   .....+||+.|+|   |    |.+
T Consensus       138 i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~---~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~a---P----e~l  207 (308)
T d1p4oa_         138 MAGEIADGMAYLNANKFVHRDLAARNCMVAEDF---TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMS---P----ESL  207 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTC---CEEECCTTCCCGGGGGGCEEGGGSSEECGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHhhCCeeeceEcCCceeecCCc---eEEEeecccceeccCCcceeeccceecccccCC---H----HHH
Confidence            588999999999998     8999999999863   49999999998664432   2344578999999   9    888


Q ss_pred             hccCcce--------------ecc-CCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IFS-RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~g-~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      .+..|+.              ++| .+||. +.+..+.+..+. .+ ..+..|..+++++.++|.+||..||.+||    
T Consensus       208 ~~~~~~~~~Dv~S~G~il~El~t~~~~p~~-~~~~~~~~~~i~-~~-~~~~~p~~~~~~l~~li~~cl~~~P~~RP----  280 (308)
T d1p4oa_         208 KDGVFTTYSDVWSFGVVLWEIATLAEQPYQ-GLSNEQVLRFVM-EG-GLLDKPDNCPDMLFELMRMCWQYNPKMRP----  280 (308)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHHTSCCTTT-TSCHHHHHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC----
T ss_pred             ccCCCCcccccccHHHHHHHHHhCCCCCCC-CCCHHHHHHHHH-hC-CCCCCcccchHHHHHHHHHHcCCChhHCc----
Confidence            8776664              666 68888 888899988888 33 45677888999999999999999999999    


Q ss_pred             CChhhhhc------CCCCCC
Q psy3184         147 GGIVDIKK------HKWFQG  160 (185)
Q Consensus       147 ~~~~~ll~------hp~f~~  160 (185)
                       ++.++++      +|+|+.
T Consensus       281 -s~~~il~~L~~~~~~~~~~  299 (308)
T d1p4oa_         281 -SFLEIISSIKEEMEPGFRE  299 (308)
T ss_dssp             -CHHHHHHHHGGGSCTTHHH
T ss_pred             -CHHHHHHHHHHhcCCCCcC
Confidence             5588776      666643

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.2e-18  Score=134.77  Aligned_cols=126  Identities=15%  Similarity=0.114  Sum_probs=97.8

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCcccccccCCccccccCCCcccccchhc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLSGRPPFCVMNDPMQTYNMIIN   83 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~~~~~~~gt~~y~a~~~P~~~~E~~~~   83 (185)
                      ..+.||+.||.|||+.     ||||+||+++.+.   +++++|||.++....  ......+++.|+|   |    |++.+
T Consensus       107 ~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~---~~kl~dfg~s~~~~~--~~~~~~~~~~y~a---P----E~l~~  174 (262)
T d1byga_         107 KFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDN---VAKVSDFGLTKEASS--TQDTGKLPVKWTA---P----EALRE  174 (262)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTS---CEEECCCCC--------------CCTTTSC---H----HHHHH
T ss_pred             HHHHHHHhhccccccCceeccccchHhheecCCC---CEeecccccceecCC--CCccccccccCCC---h----HHHhC
Confidence            3588999999999998     8999999999863   389999999986533  2344678999999   9    88877


Q ss_pred             cCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCCCC
Q psy3184          84 VGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG  148 (185)
Q Consensus        84 ~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~~~  148 (185)
                      ..|+.              ++ |.+||. +.+..++...+. .+ ..+.+|..+++++++||++||..||.+||     +
T Consensus       175 ~~~t~~sDIwSfG~il~el~t~~~~p~~-~~~~~~~~~~i~-~~-~~~~~~~~~~~~~~~li~~cl~~dP~~Rp-----s  246 (262)
T d1byga_         175 KKFSTKSDVWSFGILLWEIYSFGRVPYP-RIPLKDVVPRVE-KG-YKMDAPDGCPPAVYEVMKNCWHLDAAMRP-----S  246 (262)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSCT-TSCGGGHHHHHT-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC-----C
T ss_pred             CCCChHHHHHhHHHHHHHHHHCCCCCCC-CCCHHHHHHHHH-cC-CCCCCCccCCHHHHHHHHHHcccCHhHCc-----C
Confidence            77765              55 789998 888888888887 33 56788889999999999999999999999     5


Q ss_pred             hhhhhc
Q psy3184         149 IVDIKK  154 (185)
Q Consensus       149 ~~~ll~  154 (185)
                      +.++++
T Consensus       247 ~~~l~~  252 (262)
T d1byga_         247 FLQLRE  252 (262)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            577765

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.8e-18  Score=136.67  Aligned_cols=128  Identities=16%  Similarity=0.163  Sum_probs=100.6

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc---ccccccCCccccccCCCcccccch
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK---ILRLLSGRPPFCVMNDPMQTYNMI   81 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~---~~~~~~gt~~y~a~~~P~~~~E~~   81 (185)
                      .+.||+.|++|||++     ||||+||+++.+  + +++++|||.++......   .....+||+.|+|   |    |++
T Consensus       150 ~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~~~--~-~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~a---P----E~~  219 (311)
T d1t46a_         150 FSYQVAKGMAFLASKNCIHRDLAARNILLTHG--R-ITKICDFGLARDIKNDSNYVVKGNARLPVKWMA---P----ESI  219 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGGEEEETT--T-EEEECCCGGGSCTTSCTTSEECSSSEECGGGCC---H----HHH
T ss_pred             HHHHHHHHHHHHHhCCeeeccccccccccccc--C-cccccccchheeccCCCcceEeeecccChHHcC---H----HHh
Confidence            479999999999998     899999999885  3 59999999998665432   2334688999999   9    888


Q ss_pred             hccCcce--------------ec-cCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCCCC
Q psy3184          82 INVGIDN--------------IF-SRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR  146 (185)
Q Consensus        82 ~~~~~~~--------------l~-g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~~~  146 (185)
                      ....|+.              ++ |.+||. +.+..+.+..+...+ ..+..|..+++++.+||.+||..||.+||    
T Consensus       220 ~~~~~~~~~DIwS~G~~l~ellt~g~p~~~-~~~~~~~~~~~i~~~-~~~~~~~~~~~~l~~Li~~cl~~dP~~RP----  293 (311)
T d1t46a_         220 FNCVYTFESDVWSYGIFLWELFSLGSSPYP-GMPVDSKFYKMIKEG-FRMLSPEHAPAEMYDIMKTCWDADPLKRP----  293 (311)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTTCCSST-TCCSSHHHHHHHHHT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSC----
T ss_pred             cCCCCCCcccccchHHHHHHHHhCCCCCCC-CCCHHHHHHHHHhcC-CCCCCcccccHHHHHHHHHHcCCChhHCc----
Confidence            7766665              55 677777 666666655555233 46677788999999999999999999999    


Q ss_pred             CChhhhhc
Q psy3184         147 GGIVDIKK  154 (185)
Q Consensus       147 ~~~~~ll~  154 (185)
                       ++.++++
T Consensus       294 -s~~~il~  300 (311)
T d1t46a_         294 -TFKQIVQ  300 (311)
T ss_dssp             -CHHHHHH
T ss_pred             -CHHHHHH
Confidence             5588764

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.3e-18  Score=136.22  Aligned_cols=130  Identities=10%  Similarity=0.032  Sum_probs=99.1

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEeecCc-----ccccccCCccccccCCCcccc
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-----ILRLLSGRPPFCVMNDPMQTY   78 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-----~~~~~~gt~~y~a~~~P~~~~   78 (185)
                      ..+.|++.||+|+|+.     ||||+|||++++.   .++|+|||+++......     ......||+.|+|   |    
T Consensus       134 ~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~---~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~a---P----  203 (311)
T d1r0pa_         134 GFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKF---TVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA---L----  203 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTC---CEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSC---H----
T ss_pred             HHHHHHHHhhhhhcccCcccCCccHHhEeECCCC---CEEEecccchhhccccccccceecccccccccccC---h----
Confidence            3578999999999997     8999999998853   49999999998664432     2223578999999   9    


Q ss_pred             cchhccCcce--------------eccCCCCCCCCChHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHhhcCcCcccCC
Q psy3184          79 NMIINVGIDN--------------IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY  144 (185)
Q Consensus        79 E~~~~~~~~~--------------l~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~p~~~s~~~~~li~~~l~~dp~~R~~~  144 (185)
                      |.+....|+.              ++|..||....+..+....+. .+ ..+..|..+++++.+||.+||..||.+||  
T Consensus       204 E~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~-~g-~~~~~p~~~~~~l~~li~~cl~~dP~~RP--  279 (311)
T d1r0pa_         204 ESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLL-QG-RRLLQPEYCPDPLYEVMLKCWHPKAEMRP--  279 (311)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHH-TT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSC--
T ss_pred             HHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHH-cC-CCCCCcccCcHHHHHHHHHHcCCCHhHCc--
Confidence            8887766664              676666653555566666666 34 46778888999999999999999999999  


Q ss_pred             CCCChhhhhcC
Q psy3184         145 QRGGIVDIKKH  155 (185)
Q Consensus       145 ~~~~~~~ll~h  155 (185)
                         ++.++++|
T Consensus       280 ---s~~ei~~~  287 (311)
T d1r0pa_         280 ---SFSELVSR  287 (311)
T ss_dssp             ---CHHHHHHH
T ss_pred             ---CHHHHHHH
Confidence               55888876

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.67  E-value=5.6e-17  Score=127.02  Aligned_cols=128  Identities=16%  Similarity=0.167  Sum_probs=94.1

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCCCceEEccCCC--CCeeEEcccCceeEeecC--------cccccccCCccccccCC
Q psy3184           9 LDTLQVKEMVESMHQA-----EYKADNYVITEGEA--GNDLFVSAEGEFQVIKDG--------KILRLLSGRPPFCVMND   73 (185)
Q Consensus         9 ~~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~--~~~i~l~d~g~~~~~~~~--------~~~~~~~gt~~y~a~~~   73 (185)
                      ..+.|++.||+|||++     ||||+||++.+...  ...++++|||+++.....        ....+++||+.|||   
T Consensus       105 ~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~a---  181 (293)
T d1csna_         105 MAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMS---  181 (293)
T ss_dssp             HHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCC---
T ss_pred             HHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcC---
Confidence            3578999999999998     89999999976321  234999999999876542        12345789999999   


Q ss_pred             CcccccchhccCcce--------------eccCCCCCCCCC---hHHHHHHHHhcC--CCccCCCCCCCHHHHHHHHHHh
Q psy3184          74 PMQTYNMIINVGIDN--------------IFSRPPFCVMND---PMQTYNMIINVG--IDKIPFPKHVTRTAQSLIKALC  134 (185)
Q Consensus        74 P~~~~E~~~~~~~~~--------------l~g~~Pf~~~~~---~~~~~~~i~~~~--~~~~~~p~~~s~~~~~li~~~l  134 (185)
                      |    |++.+..|+.              ++|..||. +.+   ....+..+....  ......+..+++++.+++..|+
T Consensus       182 P----E~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~  256 (293)
T d1csna_         182 I----NTHLGREQSRRDDLEALGHVFMYFLRGSLPWQ-GLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYAR  256 (293)
T ss_dssp             H----HHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTS-SCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHH
T ss_pred             H----HHhcCCCCChHHHHHHhhHHHHHHHhCCCcCC-CccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHh
Confidence            9    9888877775              99999997 443   333333333100  0112233568899999999999


Q ss_pred             hcCcCcccCC
Q psy3184         135 KESPAERLGY  144 (185)
Q Consensus       135 ~~dp~~R~~~  144 (185)
                      ..+|.+||.+
T Consensus       257 ~~~~~~rP~y  266 (293)
T d1csna_         257 NLAFDATPDY  266 (293)
T ss_dssp             HCCTTCCCCH
T ss_pred             cCCcccCcCH
Confidence            9999999964

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.4e-15  Score=117.32  Aligned_cols=129  Identities=12%  Similarity=0.086  Sum_probs=86.6

Q ss_pred             cHHHHHHHHHHHhh-------------cCCCCCceEEccCCCCCeeEEcccCceeEeecCc-----ccccccCCcccccc
Q psy3184          10 DTLQVKEMVESMHQ-------------AEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK-----ILRLLSGRPPFCVM   71 (185)
Q Consensus        10 ~~~qi~~~l~~lH~-------------~~lkp~Nili~~~~~~~~i~l~d~g~~~~~~~~~-----~~~~~~gt~~y~a~   71 (185)
                      .+.|++.||.|+|+             .||||+||+++.+.   .+||+|||+++......     .....+||+.||| 
T Consensus       105 ~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~---~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~a-  180 (303)
T d1vjya_         105 LALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNG---TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMA-  180 (303)
T ss_dssp             HHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTS---CEEECCCTTCEEEETTTTEECC----CCSCGGGCC-
T ss_pred             HHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCC---CeEEEecCccccccCCCcceeccccceecccCcCC-
Confidence            57899999999995             18999999998863   49999999998775542     2335789999999 


Q ss_pred             CCCcccccchhccC------cce--------------eccCCCCCCC--------------CChHHHHHHHHhcCCCccC
Q psy3184          72 NDPMQTYNMIINVG------IDN--------------IFSRPPFCVM--------------NDPMQTYNMIINVGIDKIP  117 (185)
Q Consensus        72 ~~P~~~~E~~~~~~------~~~--------------l~g~~Pf~~~--------------~~~~~~~~~i~~~~~~~~~  117 (185)
                        |    |++....      |+.              ++|..||...              .........+. .+...+.
T Consensus       181 --P----E~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~  253 (303)
T d1vjya_         181 --P----EVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVC-EQKLRPN  253 (303)
T ss_dssp             --H----HHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHT-TSCCCCC
T ss_pred             --h----hhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHh-ccccCCC
Confidence              9    7765431      221              7777666311              11223333333 2222344


Q ss_pred             CCCC-----CCHHHHHHHHHHhhcCcCcccCCCCCChhhhhc
Q psy3184         118 FPKH-----VTRTAQSLIKALCKESPAERLGYQRGGIVDIKK  154 (185)
Q Consensus       118 ~p~~-----~s~~~~~li~~~l~~dp~~R~~~~~~~~~~ll~  154 (185)
                      +|..     ...++.+|+.+||..||.+||     ++.+++.
T Consensus       254 ~~~~~~~~~~~~~l~~li~~cl~~dp~~Rp-----s~~ei~~  290 (303)
T d1vjya_         254 IPNRWQSCEALRVMAKIMRECWYANGAARL-----TALRIKK  290 (303)
T ss_dssp             CCGGGGGCHHHHHHHHHHHTTCCSSGGGSC-----CHHHHHH
T ss_pred             CCcccCChHHHHHHHHHHHHHcccCHhHCc-----CHHHHHH
Confidence            4432     234688999999999999999     4477765

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.03  E-value=2.3e-06  Score=61.35  Aligned_cols=41  Identities=10%  Similarity=0.068  Sum_probs=35.3

Q ss_pred             cHHHHHHHHHHHhhc-----CCCCCceEEccCCCCCeeEEcccCceeEee
Q psy3184          10 DTLQVKEMVESMHQA-----EYKADNYVITEGEAGNDLFVSAEGEFQVIK   54 (185)
Q Consensus        10 ~~~qi~~~l~~lH~~-----~lkp~Nili~~~~~~~~i~l~d~g~~~~~~   54 (185)
                      .+.|++.|+.|||++     |+||+||+++.+    .++++|||.+....
T Consensus       108 i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~----~~~liDFG~a~~~~  153 (191)
T d1zara2         108 VLDMILEEVAKFYHRGIVHGDLSQYNVLVSEE----GIWIIDFPQSVEVG  153 (191)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSTTSEEEETT----EEEECCCTTCEETT
T ss_pred             HHHHHHHHHHHHhhCCEEEccCChhheeeeCC----CEEEEECCCcccCC
Confidence            468999999999998     899999999864    38999999987554