Psyllid ID: psy3214

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYAVTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH
Secondary Structure (PSIPRED)
cccEEEEEccEEEEEcccccEEEEEEccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEEEEEEEccEEEccEEEEEEEEEcccccccccccEEEccccccccccccccHHHHHHHccccccccEEEEEEEccccccccccEEEEccccccccccEEEEEEEccEEEEEEEcEEcccccccccccccEEEEEEcEEEEEEccHHHHHHHHHHHccccccHHHHHHHHHccccEEEEcccccccccEEEEEccccEEEEEEEEEcccccEEEEEEEEEEccccccccccccccccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEccEEEEEcHHHHEEEEEEEEccEEEEcEEEcccEEccEEcEEEcHHHHHHEEcHHHccccEEEEEEEccEccccEcEEEEEEEEEEEccEEEEEEEEEEEEEccccHHHHccccEEEEcccHHHcHHHcccHHHHHHHcccccccEEEEEEccccccccccEEEEEccccHHHHcccccEEEEEEEEEccccccccccccEEccccHHHHHHHHHHHccccccccEEEEEccccccccccEEEEEccEEEEccHHHcccccccccEEEEccccccEEEEEEEEccccccccccEEEEEEccccccccccccccHHHHHEHEHcccccc
Coil and Loop (DISEMBL)
mpnvdiilggknftltpTDYVLKVSIASSsmclsgfagmdipppagpiwilgdvFIGKFYTvfdmdnnqkngtQFAIRYgsgavsgylsqdtlrigdltiknqvfgeaikepgftfvAAKFdgilgmgydniavdgveppfyNIIQQKLLEKNVFGFYLNrynteklangevpipsahdpkelESRIenkyqlpeydhvgdgcsASYTEMQQWTNNIIEAINQGYAVTLEYPGVELKSLRIlnkqgptdqLETFWQLIRMDEVYVRDKelteeynipyhiqhedfkyeitiennsnetKTGIMRIFLGakndiegnelplsAQRSLFIELDKFRVH
Flexible Loop (DISEMBL)
mpnvdiilggknftltPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTeklangevpipsahDPKELESRIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYAVTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIegnelplsaqrslfieldkfrvh
Low Complexity Region (SEG)
MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYAVTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH
Disordered region (IsUnstruct)
***VDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLA**********************YQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYAVTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIEL******
Disordered Region (DISOPRED)
MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFY**************PIPSAHDPKELESRIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYAVTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRV*
Disordered Region (DISEMBL)
MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYAVTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH
Disordered Region (DISPRO)
MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYAVTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKF***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYAVTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	336	2.2.26 [Sep-21-2011]
O93428	396	Cathepsin D OS=Chionodrac	N/A	N/A	0.327	0.277	0.633	3e-32
Q05744	398	Cathepsin D OS=Gallus gal	yes	N/A	0.327	0.276	0.598	1e-31
Q9DEX3	396	Cathepsin D OS=Clupea har	N/A	N/A	0.327	0.277	0.589	3e-30
D4DEN7	400	Probable vacuolar proteas	N/A	N/A	0.351	0.295	0.483	5e-30
P07267	405	Saccharopepsin OS=Sacchar	yes	N/A	0.297	0.246	0.586	1e-28
D4B385	400	Probable vacuolar proteas	N/A	N/A	0.351	0.295	0.459	2e-28
Q03168	387	Lysosomal aspartic protea	N/A	N/A	0.276	0.240	0.612	1e-27
Q01294	396	Vacuolar protease A OS=Ne	N/A	N/A	0.279	0.237	0.551	1e-27
C5FS55	395	Vacuolar protease A OS=Ar	N/A	N/A	0.273	0.232	0.552	1e-27
O42630	398	Vacuolar protease A OS=Ne	yes	N/A	0.276	0.233	0.567	6e-27

>sp|O93428|CATD_CHIHA Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/112 (63%), Positives = 85/112 (75%), Gaps = 2/112 (1%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           KNGT FAI+YGSG++SGYLSQDT  IGDL I +Q+FGEAIK+PG  F+AAKFDGILGM Y
Sbjct: 130 KNGTAFAIQYGSGSLSGYLSQDTCTIGDLAIDSQLFGEAIKQPGVAFIAAKFDGILGMAY 189

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
             I+VDGV P F NI+ QK +E+NVF FYLNR N +    GE+ +    DPK
Sbjct: 190 PRISVDGVAPVFDNIMSQKKVEQNVFSFYLNR-NPDTEPGGEL-LLGGTDPK 239

Acid protease active in intracellular protein breakdown.
Chionodraco hamatus (taxid: 36188)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: 5

>sp|Q05744|CATD_CHICK Cathepsin D OS=Gallus gallus GN=CTSD PE=1 SV=1

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 89/112 (79%), Gaps = 2/112 (1%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           +NGT+FAI YG+G++SG+LSQDT+ +G+L IKNQ+FGEA+K+PG TF+AAKFDGILGM +
Sbjct: 132 ENGTEFAIHYGTGSLSGFLSQDTVTLGNLKIKNQIFGEAVKQPGITFIAAKFDGILGMAF 191

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
             I+VD V P F N++QQKL+EKN+F FYLNR  T +   GE+ +    DPK
Sbjct: 192 PRISVDKVTPFFDNVMQQKLIEKNIFSFYLNRDPTAQ-PGGEL-LLGGTDPK 241

Acid protease active in intracellular protein breakdown. In chicken it is a key enzyme for yolk formation as it is capable of catalyzing intra oocytic break down of protein components of both vitellogenin and VLDL.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 5

>sp|Q9DEX3|CATD_CLUHA Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 85/112 (75%), Gaps = 2/112 (1%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           KNGT+FAI+YGSG++SGYLSQD+  IGD+ ++ Q+FGEAIK+PG  F+AAKFDGILGM Y
Sbjct: 130 KNGTEFAIQYGSGSLSGYLSQDSCTIGDIVVEKQLFGEAIKQPGVAFIAAKFDGILGMAY 189

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
             I+VDGV P F  ++ QK +E+NVF FYLNR N +    GE+ +    DPK
Sbjct: 190 PRISVDGVPPVFDMMMSQKKVEQNVFSFYLNR-NPDTEPGGEL-LLGGTDPK 239

Acid protease active in intracellular protein breakdown.

Clupea harengus (taxid: 7950)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 5

>sp|D4DEN7|CARP_TRIVH Probable vacuolar protease A OS=Trichophyton verrucosum (strain HKI 0517) GN=PEP2 PE=3 SV=1

 Score =  132 bits (331), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 84/124 (67%), Gaps = 6/124 (4%)

Query: 48  IWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIK 101
           +W+ G        F+   Y         KNGT+FAIRYGSG++ G++SQD+++IGD+TIK
Sbjct: 111 LWVPGKDCSSIACFLHSTYDSSASSTYSKNGTKFAIRYGSGSLEGFVSQDSVKIGDMTIK 170

Query: 102 NQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           NQ+F EA  EPG  F   +FDGI+GMG+ +I+V+G+ PPFYN+I Q L+++ VF FYL  
Sbjct: 171 NQLFAEATSEPGLAFAFGRFDGIMGMGFSSISVNGITPPFYNMIDQGLIDEPVFSFYLGD 230

Query: 162 YNTE 165
            N E
Sbjct: 231 TNKE 234

Vacuolar aspartic endopeptidase which is probably also secreted and contributes to virulence.

Trichophyton verrucosum (strain HKI 0517) (taxid: 663202)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 2

EC: 5

>sp|P07267|CARP_YEAST Saccharopepsin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEP4 PE=1 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 74/104 (71%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           + NGT+FAI+YG+G++ GY+SQDTL IGDLTI  Q F EA  EPG TF   KFDGILG+G
Sbjct: 142 KANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLG 201

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
           YD I+VD V PPFYN IQQ LL++  F FYL   + +    GE 
Sbjct: 202 YDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEA 245

Aspartyl protease implicated in the post-translational regulation of S.cerevisiae vacuolar proteinases. Acts on YSCB, on YSCY and on itself.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 2

EC: 5

>sp|D4B385|CARP_ARTBC Probable vacuolar protease A OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=PEP2 PE=3 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 83/124 (66%), Gaps = 6/124 (4%)

Query: 48  IWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIK 101
           +W+ G        F+   Y         KNGT+FAIRYGSG++ G++S+D+++IGD+TIK
Sbjct: 111 LWVPGKDCSSIACFLHSTYDSSASSTYSKNGTKFAIRYGSGSLEGFVSRDSVKIGDMTIK 170

Query: 102 NQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
            Q+F EA  EPG  F   +FDGI+GMG+ +I+V+G+ PPFYN+I Q L+++ VF FYL  
Sbjct: 171 KQLFAEATSEPGLAFAFGRFDGIMGMGFSSISVNGITPPFYNMIDQGLIDEPVFSFYLGD 230

Query: 162 YNTE 165
            N +
Sbjct: 231 TNKD 234

Vacuolar aspartic endopeptidase which is probably also secreted and contributes to virulence.

Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (taxid: 663331)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 2

EC: 5

>sp|Q03168|ASPP_AEDAE Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 72/93 (77%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           +KNGT F I+YGSG++SGYLS DT+ +G +++  Q F EAI EPG  FVAAKFDGILG+G
Sbjct: 121 EKNGTAFHIQYGSGSLSGYLSTDTVGLGGVSVTKQTFAEAINEPGLVFVAAKFDGILGLG 180

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           Y +I+VDGV P FYN+  Q L++  VF FYLNR
Sbjct: 181 YSSISVDGVVPVFYNMFNQGLIDAPVFSFYLNR 213

May degrade organelles involved in the biosynthesis and secretion of vitellogenin.

Aedes aegypti (taxid: 7159)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|Q01294|CARP_NEUCR Vacuolar protease A OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pep-4 PE=3 SV=2

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 74/98 (75%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           +KNGT F I YGSG++SG++SQD + IGD+TI +Q+F EA  EPG  F   +FDGILG+G
Sbjct: 136 KKNGTSFKIEYGSGSLSGFVSQDRMTIGDITINDQLFAEATSEPGLAFAFGRFDGILGLG 195

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK 166
           YD IAV+G+ PPFY +++QKL+++ VF FYL   + E 
Sbjct: 196 YDRIAVNGITPPFYKMVEQKLVDEPVFSFYLADQDGES 233

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: -

>sp|C5FS55|CARP_ARTOC Vacuolar protease A OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) GN=PEP2 PE=3 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 73/96 (76%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           +NGT FAIRYGSG++ G++SQD ++IGD+ IKNQ+F EA  EPG  F   +FDGILGMGY
Sbjct: 139 RNGTSFAIRYGSGSLEGFVSQDNVQIGDMKIKNQLFAEATSEPGLAFAFGRFDGILGMGY 198

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
           D I+V+ + PPFY +++Q L+++ VF FYL   N +
Sbjct: 199 DTISVNKITPPFYKMVEQGLVDEPVFSFYLGDTNKD 234

Vacuolar aspartic endopeptidase which is probably also secreted and contributes to virulence.

Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) (taxid: 554155)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 2

EC: 5

>sp|O42630|CARP_ASPFU Vacuolar protease A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pep2 PE=2 SV=1

 Score =  121 bits (304), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 72/97 (74%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           + NGT+FAI+YGSG +SG++SQDTL+IGDL +  Q F EA  EPG  F   +FDGILG+G
Sbjct: 136 KANGTEFAIKYGSGELSGFVSQDTLQIGDLKVVKQDFAEATNEPGLAFAFGRFDGILGLG 195

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
           YD I+V+ + PPFYN++ Q LL++ VF FYL   N E
Sbjct: 196 YDTISVNKIVPPFYNMLDQGLLDEPVFAFYLGDTNKE 232

Vacuolar aspartic endopeptidase which is probably also secreted and contributes to virulence.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 3

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
312861579	395	cathepsin D [Branchiostoma belcheri]	0.327	0.278	0.625	1e-32
197631813	398	cathepsin D [Salmo salar] gi|223648160|g	0.327	0.276	0.651	1e-31
118344558	396	cathepsin D1 precursor [Takifugu rubripe	0.327	0.277	0.633	4e-31
342675479	396	cathepsin D [Cynoglossus semilaevis]	0.303	0.257	0.669	1e-30
432850601	398	PREDICTED: cathepsin D-like isoform 2 [O	0.327	0.276	0.625	1e-30
387915174	394	cathepsin D1 [Callorhinchus milii]	0.327	0.279	0.625	1e-30
432850599	396	PREDICTED: cathepsin D-like isoform 1 [O	0.327	0.277	0.625	1e-30
147906891	409	cathepsin D precursor [Xenopus laevis] g	0.327	0.268	0.625	1e-30
301619112	355	PREDICTED: cathepsin D-like [Xenopus (Si	0.327	0.309	0.616	2e-30
185132376	398	cathepsin D precursor [Oncorhynchus myki	0.327	0.276	0.633	2e-30

>gi|312861579|gb|ADR10277.1| cathepsin D [Branchiostoma belcheri]

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 88/112 (78%), Gaps = 2/112 (1%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           KNGT FAIRYGSG+++G+LS+DT+ IG L ++NQ F EA+ +PG TFVAAKFDGILGMGY
Sbjct: 123 KNGTDFAIRYGSGSLTGFLSEDTVTIGGLKVQNQTFAEAVTQPGITFVAAKFDGILGMGY 182

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
           D I+VDGV PPFYN++QQKL++K VF FYLNR +      GE+ +    DPK
Sbjct: 183 DTISVDGVVPPFYNMVQQKLVDKPVFSFYLNR-DPSSTTRGEL-LLGGTDPK 232

Source: Branchiostoma belcheri

Species: Branchiostoma belcheri

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|197631813|gb|ACH70630.1| cathepsin D [Salmo salar] gi|223648160|gb|ACN10838.1| Cathepsin D precursor [Salmo salar]

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/112 (65%), Positives = 86/112 (76%), Gaps = 2/112 (1%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           KNGT FAI+YGSG++SGYLSQDT  IG L+I+ QVFGEAIK+PG  F+AAKFDGILGM Y
Sbjct: 132 KNGTAFAIQYGSGSLSGYLSQDTCTIGGLSIEEQVFGEAIKQPGVAFIAAKFDGILGMAY 191

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
             I+VDGV PPF NI+ QK +E+NVF FYLNR N E    GE+ +    DPK
Sbjct: 192 PRISVDGVAPPFDNIMSQKKVEQNVFSFYLNR-NPESEPGGEL-LLGGTDPK 241

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118344558|ref|NP_001072052.1| cathepsin D1 precursor [Takifugu rubripes] gi|55771082|dbj|BAD69801.1| cathepsin D1 [Takifugu rubripes]

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/112 (63%), Positives = 85/112 (75%), Gaps = 2/112 (1%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           KNGT FAIRYGSG++SGYLSQDT  +GDL ++ Q+FGEAIK+PG  F+AAKFDGILGM Y
Sbjct: 130 KNGTAFAIRYGSGSLSGYLSQDTCTLGDLAVEKQLFGEAIKQPGIAFIAAKFDGILGMAY 189

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
             I+VDGV P F NI+ QK +EKNVF FYLNR N +    GE+ +    DPK
Sbjct: 190 PRISVDGVTPVFDNIMSQKKVEKNVFSFYLNR-NPDTQPGGEL-LLGGTDPK 239

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|342675479|gb|AEL31665.1| cathepsin D [Cynoglossus semilaevis]

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 82/103 (79%), Gaps = 1/103 (0%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           KNGT FAI+YGSG++SGYLSQDT  IG LT++NQ+FGEAIK+PG  F+AAKFDGILGM Y
Sbjct: 130 KNGTAFAIQYGSGSLSGYLSQDTCSIGGLTVENQLFGEAIKQPGIAFIAAKFDGILGMAY 189

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
             I+VDGV P F NI+QQK +E NVF FYLNR N +    GE+
Sbjct: 190 PRISVDGVLPVFDNIMQQKKVESNVFSFYLNR-NPDTAPGGEL 231

Source: Cynoglossus semilaevis

Species: Cynoglossus semilaevis

Genus: Cynoglossus

Family: Cynoglossidae

Order: Pleuronectiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432850601|ref|XP_004066828.1| PREDICTED: cathepsin D-like isoform 2 [Oryzias latipes]

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 87/112 (77%), Gaps = 2/112 (1%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           KNGT F+I+YGSG++SGYLSQDT  IGD++++NQVFGEAIK+PG  F+AAKFDGILGM Y
Sbjct: 132 KNGTSFSIQYGSGSLSGYLSQDTCTIGDISVENQVFGEAIKQPGVAFIAAKFDGILGMAY 191

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
             I+VDGV P F NI+QQK ++ NVF FYLNR N +    GE+ +    DPK
Sbjct: 192 PRISVDGVVPVFDNIMQQKKVDSNVFSFYLNR-NPDTEPGGEL-LLGGTDPK 241

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|387915174|gb|AFK11196.1| cathepsin D1 [Callorhinchus milii]

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 89/112 (79%), Gaps = 2/112 (1%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           +NGT+FAIRYGSG++SGYLS+DT+ IG++ +++Q+FGEAIK+PG  F+AAKFDGILGMGY
Sbjct: 128 RNGTKFAIRYGSGSLSGYLSKDTVLIGNIKVQSQLFGEAIKQPGLAFIAAKFDGILGMGY 187

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
             I+VDGV P F NI+ QKL+  NVF FYLNR N + L  GE+ I    DPK
Sbjct: 188 PLISVDGVIPVFDNIVTQKLVPNNVFSFYLNR-NPDSLPGGEL-ILGGTDPK 237

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432850599|ref|XP_004066827.1| PREDICTED: cathepsin D-like isoform 1 [Oryzias latipes]

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 87/112 (77%), Gaps = 2/112 (1%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           KNGT F+I+YGSG++SGYLSQDT  IGD++++NQVFGEAIK+PG  F+AAKFDGILGM Y
Sbjct: 130 KNGTSFSIQYGSGSLSGYLSQDTCTIGDISVENQVFGEAIKQPGVAFIAAKFDGILGMAY 189

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
             I+VDGV P F NI+QQK ++ NVF FYLNR N +    GE+ +    DPK
Sbjct: 190 PRISVDGVVPVFDNIMQQKKVDSNVFSFYLNR-NPDTEPGGEL-LLGGTDPK 239

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|147906891|ref|NP_001082550.1| cathepsin D precursor [Xenopus laevis] gi|28436104|dbj|BAC57431.1| cathepsin D [Xenopus laevis]

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 87/112 (77%), Gaps = 2/112 (1%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           KNGT+FAI+YG+G++SGYLS+DT+ IG+L  K Q+FGEAIK+PG TF+AAKFDGILGM Y
Sbjct: 133 KNGTEFAIQYGTGSISGYLSKDTVTIGNLGYKEQIFGEAIKQPGVTFIAAKFDGILGMAY 192

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
             I+VDGV P F NI+ QKL+E NVF FYLNR N +    GE+ +    DPK
Sbjct: 193 PIISVDGVSPCFDNIMAQKLVESNVFSFYLNR-NPDTQPGGEL-LLGGTDPK 242

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301619112|ref|XP_002938948.1| PREDICTED: cathepsin D-like [Xenopus (Silurana) tropicalis]

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/112 (61%), Positives = 87/112 (77%), Gaps = 2/112 (1%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           KNGT FAI+YG+G++SGYLS+DT+ IG+L +K Q+FGEA+K+PG TFVAAKFDGILGM Y
Sbjct: 89  KNGTAFAIQYGTGSLSGYLSKDTVTIGNLAVKGQIFGEAVKQPGVTFVAAKFDGILGMAY 148

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
             I+VDGV P F NI+ QKL+E N+F FYLNR N +    GE+ +    DPK
Sbjct: 149 PVISVDGVPPVFDNIMAQKLVESNIFSFYLNR-NPDTQPGGEL-LLGGTDPK 198

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|185132376|ref|NP_001118183.1| cathepsin D precursor [Oncorhynchus mykiss] gi|1858020|gb|AAC60301.1| cathepsin D [Oncorhynchus mykiss]

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/112 (63%), Positives = 86/112 (76%), Gaps = 2/112 (1%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           KNGT FAI+YGSG++SGYLSQDT  IG L+I++Q FGEAIK+PG  F+AAKFDGILGM Y
Sbjct: 132 KNGTAFAIQYGSGSLSGYLSQDTCTIGGLSIEDQGFGEAIKQPGVAFIAAKFDGILGMAY 191

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
             I+VDGV PPF NI+ QK +E+NVF FYLNR N +    GE+ +    DPK
Sbjct: 192 PRISVDGVAPPFDNIMSQKKVEQNVFSFYLNR-NPDSEPGGEL-LLGGTDPK 241

Source: Oncorhynchus mykiss

Species: Oncorhynchus mykiss

Genus: Oncorhynchus

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
UNIPROTKB|Q05744	398	CTSD "Cathepsin D" [Gallus gal	0.327	0.276	0.598	3.7e-32
ZFIN|ZDB-GENE-010131-8	399	ctsd "cathepsin D" [Danio reri	0.327	0.275	0.616	3.7e-32
UNIPROTKB|O93428	396	ctsd "Cathepsin D" [Chionodrac	0.327	0.277	0.633	3.7e-32
SGD|S000006075	405	PEP4 "Vacuolar aspartyl protea	0.523	0.434	0.423	9.1e-29
FB|FBgn0029093	392	cathD "cathD" [Drosophila mela	0.324	0.278	0.576	1.2e-28
RGD|621511	407	Ctsd "cathepsin D" [Rattus nor	0.303	0.250	0.559	9.4e-27
MGI|MGI:88562	410	Ctsd "cathepsin D" [Mus muscul	0.303	0.248	0.553	1.2e-26
UNIPROTKB|F1MMR6	412	CTSD "Cathepsin D" [Bos taurus	0.273	0.223	0.584	2.5e-26
UNIPROTKB|P80209	390	CTSD "Cathepsin D" [Bos taurus	0.273	0.235	0.584	2.5e-26
ASPGD|ASPL0000040189	394	pepE [Emericella nidulans (tax	0.288	0.246	0.546	2.5e-26

UNIPROTKB|Q05744 CTSD "Cathepsin D" [Gallus gallus (taxid:9031)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 67/112 (59%), Positives = 89/112 (79%)

Query:    70 KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
             +NGT+FAI YG+G++SG+LSQDT+ +G+L IKNQ+FGEA+K+PG TF+AAKFDGILGM +
Sbjct:   132 ENGTEFAIHYGTGSLSGFLSQDTVTLGNLKIKNQIFGEAVKQPGITFIAAKFDGILGMAF 191

Query:   130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
               I+VD V P F N++QQKL+EKN+F FYLNR  T +   GE+ +    DPK
Sbjct:   192 PRISVDKVTPFFDNVMQQKLIEKNIFSFYLNRDPTAQ-PGGELLLGGT-DPK 241

GO:0006508 "proteolysis" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

ZFIN|ZDB-GENE-010131-8 ctsd "cathepsin D" [Danio rerio (taxid:7955)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 69/112 (61%), Positives = 85/112 (75%)

Query:    70 KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
             KNGTQFAI+YGSG++SGYLSQDT  IGD+ ++ Q+FGEAIK+PG  F+AAKFDGILGM Y
Sbjct:   129 KNGTQFAIQYGSGSLSGYLSQDTCTIGDIAVEKQIFGEAIKQPGVAFIAAKFDGILGMAY 188

Query:   130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
               I+VDGV P F  ++ QK +EKNVF FYLNR N +    GE+ +    DPK
Sbjct:   189 PRISVDGVPPVFDMMMSQKKVEKNVFSFYLNR-NPDTQPGGELLLGGT-DPK 238

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009617 "response to bacterium" evidence=IDA

GO:0003406 "retinal pigment epithelium development" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|O93428 ctsd "Cathepsin D" [Chionodraco hamatus (taxid:36188)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 71/112 (63%), Positives = 85/112 (75%)

Query:    70 KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
             KNGT FAI+YGSG++SGYLSQDT  IGDL I +Q+FGEAIK+PG  F+AAKFDGILGM Y
Sbjct:   130 KNGTAFAIQYGSGSLSGYLSQDTCTIGDLAIDSQLFGEAIKQPGVAFIAAKFDGILGMAY 189

Query:   130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
               I+VDGV P F NI+ QK +E+NVF FYLNR N +    GE+ +    DPK
Sbjct:   190 PRISVDGVAPVFDNIMSQKKVEQNVFSFYLNR-NPDTEPGGELLLGGT-DPK 239

GO:0004190 "aspartic-type endopeptidase activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IDA

SGD|S000006075 PEP4 "Vacuolar aspartyl protease (proteinase A)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 78/184 (42%), Positives = 102/184 (55%)

Query:    71 NGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYD 130
             NGT+FAI+YG+G++ GY+SQDTL IGDLTI  Q F EA  EPG TF   KFDGILG+GYD
Sbjct:   144 NGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYD 203

Query:   131 NIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK---ELESRI 187
              I+VD V PPFYN IQQ LL++  F FYL   + +    GE       + K   ++    
Sbjct:   204 TISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLP 263

Query:   188 ENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYA-VTLEYPGVELKSLRILNKQG 246
               +    E    G G    Y E++        AI+ G + +TL     E+ +  I  K+G
Sbjct:   264 VRRKAYWEVKFEGIGLGDEYAELESHG----AAIDTGTSLITLPSGLAEMINAEIGAKKG 319

Query:   247 PTDQ 250
              T Q
Sbjct:   320 WTGQ 323

GO:0005773 "vacuole" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IMP

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0000324 "fungal-type vacuole" evidence=TAS

GO:0016237 "microautophagy" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0000328 "fungal-type vacuole lumen" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

FB|FBgn0029093 cathD "cathD" [Drosophila melanogaster (taxid:7227)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 64/111 (57%), Positives = 81/111 (72%)

Query:    70 KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
             KNGT+FAI+YGSG++SGYLS DT+ I  L IK+Q F EA+ EPG  FVAAKFDGILG+GY
Sbjct:   127 KNGTEFAIQYGSGSLSGYLSTDTVSIAGLDIKDQTFAEALSEPGLVFVAAKFDGILGLGY 186

Query:   130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDP 180
             ++I+VD V+PPFY + +Q L+   VF FYLNR +      GE+ I    DP
Sbjct:   187 NSISVDKVKPPFYAMYEQGLISAPVFSFYLNR-DPASPEGGEI-IFGGSDP 235

GO:0004190 "aspartic-type endopeptidase activity" evidence=ISS;NAS

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0048102 "autophagic cell death" evidence=IEP

GO:0006508 "proteolysis" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0005764 "lysosome" evidence=IDA

RGD|621511 Ctsd "cathepsin D" [Rattus norvegicus (taxid:10116)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 61/109 (55%), Positives = 80/109 (73%)

Query:    70 KNGTQFAIRYGSGAVSGYLSQDTLRI------GDLTIKNQVFGEAIKEPGFTFVAAKFDG 123
             KNGT F I YGSG++SGYLSQDT+ +      G + ++ Q+FGEA K+PG  F+AAKFDG
Sbjct:   133 KNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDLGGIKVEKQIFGEATKQPGVVFIAAKFDG 192

Query:   124 ILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
             ILGMGY  I+V+ V P F N+++QKL+EKN+F FYLNR  T +   GE+
Sbjct:   193 ILGMGYPFISVNKVLPVFDNLMKQKLVEKNIFSFYLNRDPTGQ-PGGEL 240

GO:0000045 "autophagic vacuole assembly" evidence=IEA;ISO

GO:0004175 "endopeptidase activity" evidence=IMP;IDA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA;ISO

GO:0005615 "extracellular space" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005764 "lysosome" evidence=IEA;ISO;IDA

GO:0006508 "proteolysis" evidence=IEA;IDA

GO:0006914 "autophagy" evidence=IEP

GO:0008152 "metabolic process" evidence=ISO

GO:0008233 "peptidase activity" evidence=ISO

GO:0031012 "extracellular matrix" evidence=IEA;ISO

GO:0042277 "peptide binding" evidence=IDA

GO:0042470 "melanosome" evidence=IEA

GO:0060441 "epithelial tube branching involved in lung morphogenesis" evidence=ISO

MGI|MGI:88562 Ctsd "cathepsin D" [Mus musculus (taxid:10090)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 62/112 (55%), Positives = 81/112 (72%)

Query:    70 KNGTQFAIRYGSGAVSGYLSQDTLRI---GD------LTIKNQVFGEAIKEPGFTFVAAK 120
             KNGT F I YGSG++SGYLSQDT+ +    D      + ++ Q+FGEA K+PG  FVAAK
Sbjct:   133 KNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDQSKARGIKVEKQIFGEATKQPGIVFVAAK 192

Query:   121 FDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
             FDGILGMGY +I+V+ V P F N++QQKL++KN+F FYLNR + E    GE+
Sbjct:   193 FDGILGMGYPHISVNNVLPVFDNLMQQKLVDKNIFSFYLNR-DPEGQPGGEL 243

GO:0000045 "autophagic vacuole assembly" evidence=IMP

GO:0004175 "endopeptidase activity" evidence=ISO

GO:0004190 "aspartic-type endopeptidase activity" evidence=IDA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005764 "lysosome" evidence=ISO;IDA

GO:0006508 "proteolysis" evidence=ISO;IC

GO:0008152 "metabolic process" evidence=IDA

GO:0008233 "peptidase activity" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0042277 "peptide binding" evidence=ISO

GO:0060441 "epithelial tube branching involved in lung morphogenesis" evidence=IMP

UNIPROTKB|F1MMR6 CTSD "Cathepsin D" [Bos taurus (taxid:9913)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 59/101 (58%), Positives = 75/101 (74%)

Query:    70 KNGTQFAIRYGSGAVSGYLSQDTLRI---------GDLTIKNQVFGEAIKEPGFTFVAAK 120
             KNGT F I YGSG++SGYLSQDT+ +         G +T++ Q FGEAIK+PG  F+AAK
Sbjct:   135 KNGTTFDIHYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAK 194

Query:   121 FDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
             FDGILGM Y  I+V+ V P F N++QQKL++KNVF F+LNR
Sbjct:   195 FDGILGMAYPRISVNNVLPVFDNLMQQKLVDKNVFSFFLNR 235

GO:0031012 "extracellular matrix" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|P80209 CTSD "Cathepsin D" [Bos taurus (taxid:9913)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 59/101 (58%), Positives = 75/101 (74%)

Query:    70 KNGTQFAIRYGSGAVSGYLSQDTLRI---------GDLTIKNQVFGEAIKEPGFTFVAAK 120
             KNGT F I YGSG++SGYLSQDT+ +         G +T++ Q FGEAIK+PG  F+AAK
Sbjct:   113 KNGTTFDIHYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAK 172

Query:   121 FDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
             FDGILGM Y  I+V+ V P F N++QQKL++KNVF F+LNR
Sbjct:   173 FDGILGMAYPRISVNNVLPVFDNLMQQKLVDKNVFSFFLNR 213

GO:0042470 "melanosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

ASPGD|ASPL0000040189 pepE [Emericella nidulans (taxid:162425)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 53/97 (54%), Positives = 74/97 (76%)

Query:    69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
             +KNG++FAI+YGSG++SG++S+D L+IGDL +K Q F EA  EPG  F   +FDGILG+G
Sbjct:   132 KKNGSEFAIKYGSGSLSGFVSRDNLQIGDLKVKGQDFAEATSEPGLAFAFGRFDGILGLG 191

Query:   129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
             +D I+V+ + PPFYN+I Q LL++ VF FYL   N +
Sbjct:   192 FDTISVNRIVPPFYNMIHQGLLDEPVFAFYLGDANKD 228

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0016237 "microautophagy" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	336
cd05490	325	cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family	1e-44
cd05488	320	cd05488, Proteinase_A_fungi, Fungal Proteinase A ,	3e-43
cd05485	329	cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi	2e-41
cd06098	317	cd06098, phytepsin, Phytepsin, a plant homolog of	1e-39
pfam00026	316	pfam00026, Asp, Eukaryotic aspartyl protease	2e-33
cd05487	326	cd05487, renin_like, Renin stimulates production o	9e-31
cd05490	325	cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family	2e-30
cd05471	283	cd05471, pepsin_like, Pepsin-like aspartic proteas	6e-30
cd05485	329	cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi	9e-30
cd06098	317	cd06098, phytepsin, Phytepsin, a plant homolog of	9e-27
cd05486	316	cd05486, Cathespin_E, Cathepsin E, non-lysosomal a	3e-26
cd05478	317	cd05478, pepsin_A, Pepsin A, aspartic protease pro	7e-25
cd05477	318	cd05477, gastricsin, Gastricsins, asparate proteas	1e-22
cd05486	316	cd05486, Cathespin_E, Cathepsin E, non-lysosomal a	4e-22
cd05487	326	cd05487, renin_like, Renin stimulates production o	5e-20
cd05488	320	cd05488, Proteinase_A_fungi, Fungal Proteinase A ,	9e-20
pfam03723	249	pfam03723, Hemocyanin_C, Hemocyanin, ig-like domai	6e-19
cd05470	109	cd05470, pepsin_retropepsin_like, Cellular and ret	1e-18
pfam00026	316	pfam00026, Asp, Eukaryotic aspartyl protease	2e-18
PTZ00165	482	PTZ00165, PTZ00165, aspartyl protease; Provisional	2e-13
cd05478	317	cd05478, pepsin_A, Pepsin A, aspartic protease pro	4e-12
PTZ00165	482	PTZ00165, PTZ00165, aspartyl protease; Provisional	6e-12
PTZ00147	453	PTZ00147, PTZ00147, plasmepsin-1; Provisional	8e-11
PTZ00013	450	PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisiona	4e-10
cd05477	318	cd05477, gastricsin, Gastricsins, asparate proteas	1e-09
cd05474	295	cd05474, SAP_like, SAPs, pepsin-like proteinases s	4e-09
cd06097	278	cd06097, Aspergillopepsin_like, Aspergillopepsin_l	7e-08
cd05471	283	cd05471, pepsin_like, Pepsin-like aspartic proteas	6e-05
PTZ00147	453	PTZ00147, PTZ00147, plasmepsin-1; Provisional	9e-05
cd05476	265	cd05476, pepsin_A_like_plant, Chroloplast Nucleoid	6e-04
cd05474	295	cd05474, SAP_like, SAPs, pepsin-like proteinases s	0.002

>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases

 Score =  154 bits (392), Expect = 1e-44
 Identities = 64/92 (69%), Positives = 79/92 (85%)

Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           KNGT+FAI+YGSG++SGYLSQDT+ IG L ++ Q+FGEA+K+PG TF+AAKFDGILGM Y
Sbjct: 61  KNGTEFAIQYGSGSLSGYLSQDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAY 120

Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
             I+VDGV P F NI+ QKL+E+NVF FYLNR
Sbjct: 121 PRISVDGVTPVFDNIMAQKLVEQNVFSFYLNR 152

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 325

>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily

 Score =  151 bits (382), Expect = 3e-43
 Identities = 55/97 (56%), Positives = 70/97 (72%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           + NGT+F I+YGSG++ G++SQDTL IGDLTIK Q F EA  EPG  F   KFDGILG+ 
Sbjct: 62  KANGTEFKIQYGSGSLEGFVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLA 121

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
           YD I+V+ + PPFYN+I Q LL++ VF FYL     +
Sbjct: 122 YDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEED 158

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydrolyzes hydrophobic residues such as Phe, Leu or Glu at the P1 position and Phe, Ile, Leu or Ala at P1'. Moreover, the enzyme is inhibited by IA3, a natural and highly specific inhibitor produced by S. cerevisiae. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 320

>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases

 Score =  146 bits (371), Expect = 2e-41
 Identities = 68/113 (60%), Positives = 87/113 (76%), Gaps = 2/113 (1%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           +KNGT+FAI+YGSG++SG+LS DT+ +G +++K Q F EAI EPG TFVAAKFDGILGMG
Sbjct: 65  KKNGTEFAIQYGSGSLSGFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMG 124

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
           Y +I+VDGV P FYN++ QKL++  VF FYLNR  + K   GE+ I    DPK
Sbjct: 125 YSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAK-EGGEL-ILGGSDPK 175

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 329

>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins

 Score =  141 bits (358), Expect = 1e-39
 Identities = 54/104 (51%), Positives = 80/104 (76%), Gaps = 1/104 (0%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           +KNGT  +I+YG+G++SG+ SQD++ +GDL +KNQVF EA KEPG TF+ AKFDGILG+G
Sbjct: 63  KKNGTSASIQYGTGSISGFFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLG 122

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
           +  I+V    P +YN+++Q L+++ VF F+LNR N ++   GE+
Sbjct: 123 FQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNR-NPDEEEGGEL 165

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease

 Score =  125 bits (315), Expect = 2e-33
 Identities = 44/95 (46%), Positives = 58/95 (61%), Gaps = 2/95 (2%)

Query: 69  QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           +  GT F+I YG G + SG+L QDT+ +G +T+ NQ FG A KEPG  F  A FDGILG+
Sbjct: 54  KSLGTTFSISYGDGSSASGFLGQDTVTVGGITVTNQQFGLATKEPGSFFATAVFDGILGL 113

Query: 128 GYDNIAVDG-VEPPFYNIIQQKLLEKNVFGFYLNR 161
           G+ +I   G   P F N+  Q L++   F  YLN 
Sbjct: 114 GFPSIEAVGTYTPVFDNLKSQGLIDSPAFSVYLNS 148

Aspartyl (acid) proteases include pepsins, cathepsins, and renins. Two-domain structure, probably arising from ancestral duplication. This family does not include the retroviral nor retrotransposon proteases (pfam00077), which are much smaller and appear to be homologous to a single domain of the eukaryotic asp proteases. Length = 316

>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure

 Score =  118 bits (297), Expect = 9e-31
 Identities = 48/110 (43%), Positives = 68/110 (61%), Gaps = 3/110 (2%)

Query: 71  NGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYD 130
           NGT+F I Y SG V G+LSQD + +G + +  Q+FGE    P   F+ AKFDG+LGMGY 
Sbjct: 64  NGTEFTIHYASGTVKGFLSQDIVTVGGIPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYP 122

Query: 131 NIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDP 180
             A+ GV P F NI+ Q +L+++VF  Y +R ++     GE+ +    DP
Sbjct: 123 KQAIGGVTPVFDNIMSQGVLKEDVFSVYYSR-DSSHSLGGEI-VLGGSDP 170

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 326

>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases

 Score =  117 bits (294), Expect = 2e-30
 Identities = 43/69 (62%), Positives = 56/69 (81%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P +   LGGK + LT  DY+LKVS   +++CLSGF G+DIPPPAGP+WILGDVFIG++Y
Sbjct: 252 LPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYY 311

Query: 61  TVFDMDNNQ 69
           TVFD DN++
Sbjct: 312 TVFDRDNDR 320

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 325

>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

 Score =  115 bits (289), Expect = 6e-30
 Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 1/101 (0%)

Query: 66  DNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGIL 125
              +  G  F+I YG G+V+G L  DT+ IG LTI NQ FG A  E G  F ++ FDGIL
Sbjct: 51  STYKDTGCTFSITYGDGSVTGGLGTDTVTIGGLTIPNQTFGCATSESGD-FSSSGFDGIL 109

Query: 126 GMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK 166
           G+G+ +++VDGV   F  +  Q L+   VF FYL R     
Sbjct: 110 GLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGG 150

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap.The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 283

>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases

 Score =  115 bits (290), Expect = 9e-30
 Identities = 44/69 (63%), Positives = 58/69 (84%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P++  +LGGK+F+LT  DYVLKV+    ++CLSGF G+DIPPPAGP+WILGDVFIGK+Y
Sbjct: 256 LPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYY 315

Query: 61  TVFDMDNNQ 69
           T FD+ NN+
Sbjct: 316 TEFDLGNNR 324

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank a deep active site cleft. Each of the two related lobes contributes one active site aspartic acid residue and contains a single carbohydrate group. Cathepsin D is an essential enzyme. Mice deficient for proteinase cathepsin D, generated by gene targeting, develop normally during the first 2 weeks, stop thriving in the third week and die in a state of anorexia in the fourth week. The mice develop atrophy of ileal mucosa followed by other degradation of intestinal organs. In these knockout mice, lysosomal proteolysis was normal. These results suggest that vital functions of cathepsin D are exerted by limited proteolysis of proteins regulating cell growth and/or tissue homeostasis, while its contribution to bulk proteolysis in lysosomes appears to be non-critical. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 329

>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins

 Score =  107 bits (268), Expect = 9e-27
 Identities = 38/69 (55%), Positives = 51/69 (73%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           MPNV   +GGK F LTP  Y+LKV   +++ C+SGF  +D+PPP GP+WILGDVF+G ++
Sbjct: 244 MPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYH 303

Query: 61  TVFDMDNNQ 69
           TVFD  N +
Sbjct: 304 TVFDYGNLR 312

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease

 Score =  106 bits (265), Expect = 3e-26
 Identities = 43/104 (41%), Positives = 69/104 (66%), Gaps = 1/104 (0%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
             NG  F+I+YG+G+++G +  D + +  +T++NQ F E++ EPG TF  ++FDGILG+ 
Sbjct: 52  VSNGEAFSIQYGTGSLTGIIGIDQVTVEGITVQNQQFAESVSEPGSTFQDSEFDGILGLA 111

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
           Y ++AVDGV P F N++ Q L+E  +F  Y++R N      GE+
Sbjct: 112 YPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSR-NPNSADGGEL 154

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal lobes of the enzyme. The aspartic acid residues act together to allow a water molecule to attack the peptide bond. One aspartic acid residue (in its deprotonated form) activates the attacking water molecule, whereas the other aspartic acid residue (in its protonated form) polarizes the peptide carbonyl, increasing its susceptibility to attack. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 316

>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals

 Score =  102 bits (255), Expect = 7e-25
 Identities = 38/93 (40%), Positives = 60/93 (64%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           Q  G   +I+YG+G+++G L  DT+++G ++  NQ+FG +  EPG  F  A FDGILG+ 
Sbjct: 62  QSTGQPLSIQYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLA 121

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           Y +IA  G  P F N++ Q L+ +++F  YL+ 
Sbjct: 122 YPSIASSGATPVFDNMMSQGLVSQDLFSVYLSS 154

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa

 Score = 96.1 bits (239), Expect = 1e-22
 Identities = 38/91 (41%), Positives = 57/91 (62%)

Query: 71  NGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYD 130
           NG  F+++YGSG+++G    DT+ +  + I NQ FG +  EPG  FV A+FDGILG+ Y 
Sbjct: 57  NGETFSLQYGSGSLTGIFGYDTVTVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYP 116

Query: 131 NIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           +I+  G       ++QQ LL+  +F FYL+ 
Sbjct: 117 SISAGGATTVMQGMMQQNLLQAPIFSFYLSG 147

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 318

>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease

 Score = 94.6 bits (235), Expect = 4e-22
 Identities = 35/69 (50%), Positives = 47/69 (68%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           MP+V   + G  ++L+P  Y L+        C SGF G+DIPPPAGP+WILGDVFI ++Y
Sbjct: 243 MPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYY 302

Query: 61  TVFDMDNNQ 69
           +VFD  NN+
Sbjct: 303 SVFDRGNNR 311

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal lobes of the enzyme. The aspartic acid residues act together to allow a water molecule to attack the peptide bond. One aspartic acid residue (in its deprotonated form) activates the attacking water molecule, whereas the other aspartic acid residue (in its protonated form) polarizes the peptide carbonyl, increasing its susceptibility to attack. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 316

>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure

 Score = 88.7 bits (220), Expect = 5e-20
 Identities = 36/69 (52%), Positives = 47/69 (68%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P++   LGGK +TL+ +DYVL+ S  S  +C   F  MDIPPP GP+W+LG  FI KFY
Sbjct: 252 LPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFY 311

Query: 61  TVFDMDNNQ 69
           T FD  NN+
Sbjct: 312 TEFDRQNNR 320

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 326

>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily

 Score = 87.9 bits (218), Expect = 9e-20
 Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P++     G NFTL P DY L+VS      C+S F GMD P P GP+ I+GD F+ K+Y
Sbjct: 251 LPDLTFNFDGYNFTLGPFDYTLEVS----GSCISAFTGMDFPEPVGPLAIVGDAFLRKYY 306

Query: 61  TVFDMDNN 68
           +V+D+ NN
Sbjct: 307 SVYDLGNN 314

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydrolyzes hydrophobic residues such as Phe, Leu or Glu at the P1 position and Phe, Ile, Leu or Ala at P1'. Moreover, the enzyme is inhibited by IA3, a natural and highly specific inhibitor produced by S. cerevisiae. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 320

>gnl|CDD|217694 pfam03723, Hemocyanin_C, Hemocyanin, ig-like domain

 Score = 84.1 bits (209), Expect = 6e-19
 Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 20/115 (17%)

Query: 229 LEYPGVELKSLRILNKQGPTDQLETFWQ-----LIRMDEVYVRDKELTEEYNIP---YHI 280
           LE+PGV+++S+ +  K      L T++      L       +   E   + ++      +
Sbjct: 8   LEFPGVKIESVEVDGK------LVTYFDDFDVDLSNA----LDFTEEVPDVSVKARQTRL 57

Query: 281 QHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRV 335
            H+ F Y I + ++     T  +RIFLG K D  GNEL L+ QR  FIELDKF V
Sbjct: 58  NHKPFTYNIDVNSDKAADAT--VRIFLGPKYDENGNELSLNEQRRNFIELDKFVV 110

This family includes arthropod hemocyanins and insect larval storage proteins. Length = 249

>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases

 Score = 80.1 bits (198), Expect = 1e-18
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
             NG  F+I YG+G++SG LS DT+ IGD+ +  Q FG A  EPG TF+ A FDGILG+
Sbjct: 51  SDNGCTFSITYGTGSLSGGLSTDTVSIGDIEVVGQAFGCATDEPGATFLPALFDGILGL 109

This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site ASP residues with each N- and C-terminal lobe contributing one residue. While the fungal and mammalian pepsins are bilobal proteins, retropepsins function as dimers and the monomer resembles structure of the N- or C-terminal domains of eukaryotic enzyme. The active site motif (Asp-Thr/Ser-Gly-Ser) is conserved between the retroviral and eukaryotic proteases and between the N-and C-terminal of eukaryotic pepsin-like proteases. The retropepsin-like family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements; as well as eukaryotic DNA-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. Retropepsin is synthesized as part of the POL polyprotein that contains an aspartyl-protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A) and A2 (retropepsin family). Length = 109

>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P+V   +GG   T+ P+DYVL+ S   SS CLSGF       P GP+WILGDVF+   Y
Sbjct: 246 LPDVTFFIGGAKITVPPSDYVLQPSSGGSSTCLSGFQSS----PGGPLWILGDVFLRSAY 301

Query: 61  TVFDMDNNQ 69
            VFD DNN+
Sbjct: 302 VVFDRDNNR 310

Aspartyl (acid) proteases include pepsins, cathepsins, and renins. Two-domain structure, probably arising from ancestral duplication. This family does not include the retroviral nor retrotransposon proteases (pfam00077), which are much smaller and appear to be homologous to a single domain of the eukaryotic asp proteases. Length = 316

>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 77  IRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY---DNIA 133
           I+YG+G     L +DT++IG L +K+Q  G AI+E    F    FDG++G+G+   D   
Sbjct: 185 IQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKE 244

Query: 134 VDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
                P   NI +Q LL++N+F FY+++
Sbjct: 245 SKKALPIVDNIKKQNLLKRNIFSFYMSK 272

Length = 482

>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals

 Score = 65.5 bits (160), Expect = 4e-12
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           MP+V   + G  + L P+ Y+L+        C SGF  M      G +WILGDVFI ++Y
Sbjct: 252 MPDVVFTINGVQYPLPPSAYILQ----DQGSCTSGFQSMG----LGELWILGDVFIRQYY 303

Query: 61  TVFDMDNNQ 69
           +VFD  NN+
Sbjct: 304 SVFDRANNK 312

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317

>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional

 Score = 65.9 bits (161), Expect = 6e-12
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 13  FTLTPTDYVLKVSIAS--SSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDN 67
           F + P DYV++   +      C+ G   MD+P P GP+++LG+ FI K+Y++FD D+
Sbjct: 382 FDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDH 438

Length = 482

>gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional

 Score = 62.6 bits (152), Expect = 8e-11
 Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 3/100 (3%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
           +K+GT+  + Y SG VSG+ S+D + IG+L++  + F E     GF   +  + FDGI G
Sbjct: 191 EKDGTKVEMNYVSGTVSGFFSKDLVTIGNLSVPYK-FIEVTDTNGFEPFYTESDFDGIFG 249

Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK 166
           +G+ ++++  V+P    +  Q  +E+ VF FYL   +  K
Sbjct: 250 LGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHK 289

Length = 453

>gnl|CDD|140051 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisional

 Score = 60.0 bits (145), Expect = 4e-10
 Identities = 31/95 (32%), Positives = 58/95 (61%), Gaps = 7/95 (7%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIK----EPGFTFVAAKFDGI 124
           +K+GT+  I YGSG V G+ S+D + +G L++  + F E       EP ++  +++FDGI
Sbjct: 190 EKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYK-FIEVTDTDDLEPIYS--SSEFDGI 246

Query: 125 LGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
           LG+G+ ++++  ++P    +  Q  ++  +F FYL
Sbjct: 247 LGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL 281

Length = 450

>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAG-PIWILGDVFIGKF 59
           +P +   + G +F L P+ Y+L+    ++  C  G     +P   G P+WILGDVF+ ++
Sbjct: 247 LPTLTFTINGVSFPLPPSAYILQ----NNGYCTVGIEPTYLPSQNGQPLWILGDVFLRQY 302

Query: 60  YTVFDMDNNQ 69
           Y+V+D+ NNQ
Sbjct: 303 YSVYDLGNNQ 312

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 318

>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 75  FAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYD-NI 132
           F+I YG G + SG    DT+ IG  T+KN  F  A              G+LG+G   N 
Sbjct: 32  FSISYGDGTSASGTWGTDTVSIGGATVKNLQFAVANSTSSDV-------GVLGIGLPGNE 84

Query: 133 AVDGVEPPFYNIIQ----QKLLEKNVFGFYLN 160
           A  G    + N       Q L++KN +  YLN
Sbjct: 85  ATYGTGYTYPNFPIALKKQGLIKKNAYSLYLN 116

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). The overall structure of Sap protein conforms to the classical aspartic proteinase fold typified by pepsin. SAP is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 295

>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 71  NGTQFAIRYGSGA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
            G  ++I YG G+  SG +  DT+ IG + + NQ    A       F     DG+LG+ +
Sbjct: 55  PGATWSISYGDGSSASGIVYTDTVSIGGVEVPNQAIELATAVSASFFSDTASDGLLGLAF 114

Query: 130 DNIAVDGVEPP-----FYNIIQQKLLEKNVFGFYLNR 161
            +I  + V+PP     F N +    L+  +F   L +
Sbjct: 115 SSI--NTVQPPKQKTFFENALSS--LDAPLFTADLRK 147

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-site cleft capable of interacting with multiple residues of a substrate. Although members of the aspartic protease family of enzymes have very similar three-dimensional structures and catalytic mechanisms, each has unique substrate specificity. The members of this family has an optimal acidic pH (5.5) and cleaves protein substrates with similar specificity to that of porcine pepsin A, preferring hydrophobic residues at P1 and P1' in the cleave site. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 278

>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 15/21 (71%), Positives = 19/21 (90%)

Query: 49  WILGDVFIGKFYTVFDMDNNQ 69
           WILGDVF+  +YTVFD+DNN+
Sbjct: 258 WILGDVFLRNYYTVFDLDNNR 278

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap.The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 283

>gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P ++     K +TL P  Y+  +    S++C+     +D+       +ILGD F+ K++
Sbjct: 378 LPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNT---FILGDPFMRKYF 434

Query: 61  TVFDMDNN 68
           TVFD DN+
Sbjct: 435 TVFDYDNH 442

Length = 453

>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 74  QFAIRYGSGAVS-GYLSQDTLRIGD--LTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
            +   YG G+ + G L+ +T   GD  +++ N  FG      G +F  A  DGILG+G
Sbjct: 32  SYEYSYGDGSSTSGVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGA--DGILGLG 87

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265

>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 3   NVDIILGGKNFTLTPTDYVLKVSI--ASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           ++    GG   ++  +D VL  S        C  G       P      ILGD F+   Y
Sbjct: 226 SLTFNFGGATISVPLSDLVLPASTDDGGDGACYLGIQ-----PSTSDYNILGDTFLRSAY 280

Query: 61  TVFDMDNNQ 69
            V+D+DNN+
Sbjct: 281 VVYDLDNNE 289

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). The overall structure of Sap protein conforms to the classical aspartic proteinase fold typified by pepsin. SAP is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 295

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
PTZ00165	482	aspartyl protease; Provisional	100.0
cd05490	325	Cathepsin_D2 Cathepsin_D2, pepsin family of protei	100.0
cd05486	316	Cathespin_E Cathepsin E, non-lysosomal aspartic pr	100.0
cd06098	317	phytepsin Phytepsin, a plant homolog of mammalian	100.0
cd05487	326	renin_like Renin stimulates production of angioten	99.97
cd05478	317	pepsin_A Pepsin A, aspartic protease produced in g	99.97
cd05477	318	gastricsin Gastricsins, asparate proteases produce	99.97
cd05485	329	Cathepsin_D_like Cathepsin_D_like, pepsin family o	99.97
PTZ00147	453	plasmepsin-1; Provisional	99.97
cd05488	320	Proteinase_A_fungi Fungal Proteinase A , aspartic	99.97
PTZ00013	450	plasmepsin 4 (PM4); Provisional	99.97
PF03723	250	Hemocyanin_C: Hemocyanin, ig-like domain; InterPro	99.97
cd06097	278	Aspergillopepsin_like Aspergillopepsin_like, aspar	99.96
PF00026	317	Asp: Eukaryotic aspartyl protease The Prosite entr	99.95
cd05473	364	beta_secretase_like Beta-secretase, aspartic-acid	99.95
cd05471	283	pepsin_like Pepsin-like aspartic proteases, biloba	99.93
cd06096	326	Plasmepsin_5 Plasmepsins are a class of aspartic p	99.92
KOG1339|consensus	398		99.92
cd05474	295	SAP_like SAPs, pepsin-like proteinases secreted fr	99.91
cd05476	265	pepsin_A_like_plant Chroloplast Nucleoids DNA-bind	99.88
cd05472	299	cnd41_like Chloroplast Nucleoids DNA-binding Prote	99.87
cd05475	273	nucellin_like Nucellins, plant aspartic proteases	99.85
PLN03146	431	aspartyl protease family protein; Provisional	99.84
cd05470	109	pepsin_retropepsin_like Cellular and retroviral pe	99.79
PF14543	164	TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A	99.67
cd05489	362	xylanase_inhibitor_I_like TAXI-I inhibits degradat	99.64
cd05483	96	retropepsin_like_bacteria Bacterial aspartate prot	97.87
cd06098	317	phytepsin Phytepsin, a plant homolog of mammalian	97.4
cd05490	325	Cathepsin_D2 Cathepsin_D2, pepsin family of protei	97.38
cd05486	316	Cathespin_E Cathepsin E, non-lysosomal aspartic pr	97.25
PTZ00165	482	aspartyl protease; Provisional	97.14
cd05487	326	renin_like Renin stimulates production of angioten	97.07
cd05485	329	Cathepsin_D_like Cathepsin_D_like, pepsin family o	96.98
PTZ00147	453	plasmepsin-1; Provisional	96.18
cd05488	320	Proteinase_A_fungi Fungal Proteinase A , aspartic	96.11
PTZ00013	450	plasmepsin 4 (PM4); Provisional	95.8
PF00026	317	Asp: Eukaryotic aspartyl protease The Prosite entr	95.68
PF13650	90	Asp_protease_2: Aspartyl protease	95.53
cd05478	317	pepsin_A Pepsin A, aspartic protease produced in g	95.19
cd05477	318	gastricsin Gastricsins, asparate proteases produce	94.56
TIGR02281	121	clan_AA_DTGA clan AA aspartic protease, TIGR02281	93.74
cd05489	362	xylanase_inhibitor_I_like TAXI-I inhibits degradat	93.63
cd05474	295	SAP_like SAPs, pepsin-like proteinases secreted fr	93.53
KOG1339|consensus	398		92.65
cd05475	273	nucellin_like Nucellins, plant aspartic proteases	91.93
cd05479	124	RP_DDI RP_DDI; retropepsin-like domain of DNA dama	91.42
cd05472	299	cnd41_like Chloroplast Nucleoids DNA-binding Prote	91.18
cd05476	265	pepsin_A_like_plant Chroloplast Nucleoids DNA-bind	89.87
PF11925	370	DUF3443: Protein of unknown function (DUF3443); In	86.48
cd06096	326	Plasmepsin_5 Plasmepsins are a class of aspartic p	85.19
cd05484	91	retropepsin_like_LTR_2 Retropepsins_like_LTR, peps	83.9
cd06095	86	RP_RTVL_H_like Retropepsin of the RTVL_H family of	82.88

>PTZ00165 aspartyl protease; Provisional

Probab=100.00  E-value=1.9e-33  Score=277.08  Aligned_cols=201  Identities=22%  Similarity=0.382  Sum_probs=167.3

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccC--CCc---EEEEEeCCceE
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQK--NGT---QFAIRYGSGAV   84 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~--~~~---~~~i~Yg~Gs~   84 (336)
                      .-.+|..++++|+|+|..    .+.+||||+++||++.      |..|+.|+|++|+||++  .+.   .+.|.||+|++
T Consensus       117 ~d~~Y~~~I~IGTPpQ~f----~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~  192 (482)
T PTZ00165        117 HNSQYFGEIQVGTPPKSF----VVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGEC  192 (482)
T ss_pred             cCCeEEEEEEeCCCCceE----EEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCCccceEEEEeCCCcE
Confidence            345799999999999964    7889999999999974      55688999999999998  665   68899999999


Q ss_pred             EEEEeEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCccccc---ccCCCCchHHHHHHhcccCCCeEEEEeec
Q psy3214          85 SGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNI---AVDGVEPPFYNIIQQKLLEKNVFGFYLNR  161 (336)
Q Consensus        85 ~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~---s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~  161 (336)
                      +|.+++|+|++|++++++|.||+++.+++..|...++|||||||++.+   +..+..|++++|++||+|++|+||+||++
T Consensus       193 ~G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~  272 (482)
T PTZ00165        193 VLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSK  272 (482)
T ss_pred             EEEEEEEEEEECCEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEecc
Confidence            999999999999999999999999988776787788999999999987   34457899999999999999999999987


Q ss_pred             CCCCCCCCceEEecCCCCCccc--ccccceeEecC-Cccc------c---------CCC---ccccchhhhhhhHHHHHH
Q psy3214         162 YNTEKLANGEVPIPSAHDPKEL--ESRIENKYQLP-EYDH------V---------GDG---CSASYTEMQQWTNNIIEA  220 (336)
Q Consensus       162 ~~~~~~~~G~l~f~GGiD~~~~--~G~l~~~~~~~-~~~~------~---------~~~---~~~s~t~l~~w~~~i~~~  220 (336)
                       +.  ..+|+|+| ||+|++++  .|+++|++... .+|.      .         ..+   ..++++++...+..++++
T Consensus       273 -~~--~~~G~l~f-GGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~  348 (482)
T PTZ00165        273 -DL--NQPGSISF-GSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINP  348 (482)
T ss_pred             -CC--CCCCEEEe-CCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHH
Confidence             43  34799999 99999887  57899974332 1221      0         111   344778888888888887


Q ss_pred             Hhcc
Q psy3214         221 INQG  224 (336)
Q Consensus       221 i~~g  224 (336)
                      +.+.
T Consensus       349 i~~~  352 (482)
T PTZ00165        349 LLEK  352 (482)
T ss_pred             HHHH
Confidence            7765

>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases

Probab=100.00  E-value=4.7e-33  Score=263.23  Aligned_cols=202  Identities=39%  Similarity=0.660  Sum_probs=169.0

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc--------ccccceeeeecccCccCCCcEEEEEeCCceEEEEE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD--------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYL   88 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~--------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~   88 (336)
                      -.+|.+++.+|+|+|..    .+.+||||+++||++.        |..++.|+|++|+||+..++.+.+.||+|+++|.+
T Consensus         4 ~~~Y~~~i~iGtP~q~~----~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~   79 (325)
T cd05490           4 DAQYYGEIGIGTPPQTF----TVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYL   79 (325)
T ss_pred             CCEEEEEEEECCCCcEE----EEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEE
Confidence            35799999999999854    7889999999999863        44578999999999999999999999999999999


Q ss_pred             eEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCC
Q psy3214          89 SQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLA  168 (336)
Q Consensus        89 ~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~  168 (336)
                      ++|+|++|+.++++|.||+++..++..|....+|||||||++.++..+.+|++++|++||+|++++||+||++ +.+...
T Consensus        80 ~~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~-~~~~~~  158 (325)
T cd05490          80 SQDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNR-DPDAQP  158 (325)
T ss_pred             eeeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeC-CCCCCC
Confidence            9999999999999999999998876556667789999999998887778899999999999999999999998 544446


Q ss_pred             CceEEecCCCCCcccccccceeEecC-Cccc-------cC-------C---CccccchhhhhhhHHHHHHHhcc
Q psy3214         169 NGEVPIPSAHDPKELESRIENKYQLP-EYDH-------VG-------D---GCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       169 ~G~l~f~GGiD~~~~~G~l~~~~~~~-~~~~-------~~-------~---~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      +|+|+| ||+|+++|.|+|.|++... .+|.       +.       .   ...++++++.+.+...++++.+.
T Consensus       159 ~G~l~~-Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~  231 (325)
T cd05490         159 GGELML-GGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTLCKGGCEAIVDTGTSLITGPVEEVRALQKA  231 (325)
T ss_pred             CCEEEE-CccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeeecCCCCEEEECCCCccccCCHHHHHHHHHH
Confidence            899999 9999999999999864322 1111       00       1   13346788888888888777664

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank

>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease

Probab=100.00  E-value=1.1e-32  Score=259.65  Aligned_cols=198  Identities=26%  Similarity=0.487  Sum_probs=164.7

Q ss_pred             ceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeEEEE
Q psy3214          20 YVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTL   93 (336)
Q Consensus        20 y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D~v   93 (336)
                      |..++.+|+|+|.+    .+.+||||+++||++.      |..++.|+|++|+||+..++.+++.||+|+++|.+++|+|
T Consensus         1 Y~~~i~iGtP~Q~~----~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v   76 (316)
T cd05486           1 YFGQISIGTPPQNF----TVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQV   76 (316)
T ss_pred             CeEEEEECCCCcEE----EEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEE
Confidence            78899999999864    7889999999999964      4467899999999999999999999999999999999999


Q ss_pred             EECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCceEE
Q psy3214          94 RIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVP  173 (336)
Q Consensus        94 ~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G~l~  173 (336)
                      +|+++++++|.||++...++..|....+|||||||++.++..+..|++++|++||+|++++||+||++ ++....+|+|+
T Consensus        77 ~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~-~~~~~~~g~l~  155 (316)
T cd05486          77 TVEGITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSR-NPNSADGGELV  155 (316)
T ss_pred             EECCEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEcc-CCCCCCCcEEE
Confidence            99999999999999887766556667889999999998887778899999999999999999999998 54445689999


Q ss_pred             ecCCCCCcccccccceeEecCC-ccc------c--------CC---CccccchhhhhhhHHHHHHHhc
Q psy3214         174 IPSAHDPKELESRIENKYQLPE-YDH------V--------GD---GCSASYTEMQQWTNNIIEAINQ  223 (336)
Q Consensus       174 f~GGiD~~~~~G~l~~~~~~~~-~~~------~--------~~---~~~~s~t~l~~w~~~i~~~i~~  223 (336)
                      | ||+|+++|.|+|.|++.... +|.      .        ..   ...++++++.+.+...++++.+
T Consensus       156 f-Gg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~~~~~l~~  222 (316)
T cd05486         156 F-GGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPSGDIKQLQN  222 (316)
T ss_pred             E-cccCHHHcccceEEEECCCceEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCHHHHHHHHH
Confidence            9 99999999999999753321 111      0        01   1333667777777776666644

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt

>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins

Probab=100.00  E-value=3.2e-32  Score=256.78  Aligned_cols=171  Identities=36%  Similarity=0.659  Sum_probs=152.8

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEe
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLS   89 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~   89 (336)
                      -..|.+++.+|+|+|-    +.+.+||||+++||++.       |..++.|+|++|+||+..+..+.+.||+|+++|.++
T Consensus         8 ~~~Y~~~i~iGtP~Q~----~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~   83 (317)
T cd06098           8 DAQYFGEIGIGTPPQK----FTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISGFFS   83 (317)
T ss_pred             CCEEEEEEEECCCCeE----EEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEEEEE
Confidence            4578999999999985    47889999999999973       445789999999999999999999999999999999


Q ss_pred             EEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCC
Q psy3214          90 QDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLAN  169 (336)
Q Consensus        90 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~  169 (336)
                      +|+|++|+.++++|.||+++...+..|....+|||||||++..+..+..|++++|++||+|++++||+||++ +.....+
T Consensus        84 ~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~-~~~~~~~  162 (317)
T cd06098          84 QDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNR-NPDEEEG  162 (317)
T ss_pred             eeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEec-CCCCCCC
Confidence            999999999999999999998776567777899999999998877777899999999999999999999998 5444568


Q ss_pred             ceEEecCCCCCcccccccceeEec
Q psy3214         170 GEVPIPSAHDPKELESRIENKYQL  193 (336)
Q Consensus       170 G~l~f~GGiD~~~~~G~l~~~~~~  193 (336)
                      |+|+| ||+|+++|.|++.|++..
T Consensus       163 G~l~f-Gg~d~~~~~g~l~~~pv~  185 (317)
T cd06098         163 GELVF-GGVDPKHFKGEHTYVPVT  185 (317)
T ss_pred             cEEEE-CccChhhcccceEEEecC
Confidence            99999 999999999999997543

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro

>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure

Probab=99.97  E-value=2.2e-31  Score=251.96  Aligned_cols=201  Identities=28%  Similarity=0.538  Sum_probs=164.8

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc--------ccccceeeeecccCccCCCcEEEEEeCCceEEEEE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD--------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYL   88 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~--------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~   88 (336)
                      -..|.+++.+|+|+|-+    .+.+||||+++||++.        |..++.|+|++|+||+..++.+++.||+|+++|.+
T Consensus         6 ~~~y~~~i~iGtP~q~~----~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~~   81 (326)
T cd05487           6 DTQYYGEIGIGTPPQTF----KVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGFL   81 (326)
T ss_pred             CCeEEEEEEECCCCcEE----EEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEEE
Confidence            45789999999999864    7899999999999852        45678999999999999999999999999999999


Q ss_pred             eEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCC
Q psy3214          89 SQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLA  168 (336)
Q Consensus        89 ~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~  168 (336)
                      ++|+|++|+..++ |.||++...+...|....+|||||||++..+..+..|++++|++||+|++++||+||++ +.+...
T Consensus        82 ~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~-~~~~~~  159 (326)
T cd05487          82 SQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSR-DSSHSL  159 (326)
T ss_pred             eeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeC-CCCCCC
Confidence            9999999999985 88999987754455556789999999988877778899999999999999999999998 544456


Q ss_pred             CceEEecCCCCCcccccccceeEe-------cCCcccc--------CC---CccccchhhhhhhHHHHHHHhcc
Q psy3214         169 NGEVPIPSAHDPKELESRIENKYQ-------LPEYDHV--------GD---GCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       169 ~G~l~f~GGiD~~~~~G~l~~~~~-------~~~~~~~--------~~---~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      +|+|+| ||+|+++|+|+++|++.       ++.....        ..   ...++++++..++...++++.+.
T Consensus       160 ~G~l~f-Gg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGts~~~lP~~~~~~l~~~  232 (326)
T cd05487         160 GGEIVL-GGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCEDGCTAVVDTGASFISGPTSSISKLMEA  232 (326)
T ss_pred             CcEEEE-CCcChhhccCceEEEECCcCceEEEEecEEEECCEEEecCCCCEEEECCCccchhCcHHHHHHHHHH
Confidence            899999 99999999999998632       2211110        11   13346677777777777666554

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r

>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals

Probab=99.97  E-value=2.9e-31  Score=250.15  Aligned_cols=200  Identities=26%  Similarity=0.419  Sum_probs=166.4

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQ   90 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~   90 (336)
                      ...|..++.+|+|+|-.    .+.+||||+++||++.      |..++.|+|++|+||+..+..+.+.||+|+++|.++.
T Consensus         8 ~~~Y~~~i~vGtp~q~~----~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~~~~   83 (317)
T cd05478           8 DMEYYGTISIGTPPQDF----TVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGILGY   83 (317)
T ss_pred             CCEEEEEEEeCCCCcEE----EEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCCcEEEEEECCceEEEEEee
Confidence            45789999999998854    7889999999999964      3357899999999999999999999999999999999


Q ss_pred             EEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCc
Q psy3214          91 DTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG  170 (336)
Q Consensus        91 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G  170 (336)
                      |+|++|+++++++.||++...++..+...+.|||||||++.++..+..|++++|++||+|++++||+||++ +  ...+|
T Consensus        84 D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~-~--~~~~g  160 (317)
T cd05478          84 DTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSS-N--GQQGS  160 (317)
T ss_pred             eEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCC-C--CCCCe
Confidence            99999999999999999987765433345689999999998877777899999999999999999999998 4  23579


Q ss_pred             eEEecCCCCCcccccccceeEecCC-ccc------c--------C---CCccccchhhhhhhHHHHHHHhcc
Q psy3214         171 EVPIPSAHDPKELESRIENKYQLPE-YDH------V--------G---DGCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       171 ~l~f~GGiD~~~~~G~l~~~~~~~~-~~~------~--------~---~~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      +|+| ||+|+++|.|+++|++.... +|.      .        .   ....++++++.+.+...++++...
T Consensus       161 ~l~~-Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~  231 (317)
T cd05478         161 VVTF-GGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVACSGGCQAIVDTGTSLLVGPSSDIANIQSD  231 (317)
T ss_pred             EEEE-cccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEccCCCCEEEECCCchhhhCCHHHHHHHHHH
Confidence            9999 99999999999999753321 111      0        0   113346788888888888777665

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which

>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa

Probab=99.97  E-value=3.6e-31  Score=249.65  Aligned_cols=199  Identities=25%  Similarity=0.418  Sum_probs=165.6

Q ss_pred             CceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeEEE
Q psy3214          19 DYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDT   92 (336)
Q Consensus        19 ~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D~   92 (336)
                      .|+.++.+|+|+|-+    .+.+||||+++||++.      |..++.|+|++|+||+..++.+++.||+|+++|.++.|+
T Consensus         3 ~y~~~i~iGtP~q~~----~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~   78 (318)
T cd05477           3 SYYGEISIGTPPQNF----LVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDT   78 (318)
T ss_pred             EEEEEEEECCCCcEE----EEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeE
Confidence            689999999999854    7889999999999974      445789999999999999999999999999999999999


Q ss_pred             EEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCceE
Q psy3214          93 LRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV  172 (336)
Q Consensus        93 v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G~l  172 (336)
                      |++|+.++++|.||++...++..+...+.+||||||++..+..+.++++++|++||.|++++||+||++ +. ...+|+|
T Consensus        79 i~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~-~~-~~~~g~l  156 (318)
T cd05477          79 VTVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSG-QQ-GQQGGEL  156 (318)
T ss_pred             EEECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcC-CC-CCCCCEE
Confidence            999999999999999998765555556789999999998887778899999999999999999999998 42 2357999


Q ss_pred             EecCCCCCcccccccceeEecC-Cccc------c---------C---CCccccchhhhhhhHHHHHHHhcc
Q psy3214         173 PIPSAHDPKELESRIENKYQLP-EYDH------V---------G---DGCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       173 ~f~GGiD~~~~~G~l~~~~~~~-~~~~------~---------~---~~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      +| ||+|+++|.|++.|++... .+|.      .         .   ....++++.+...+..+++++.+.
T Consensus       157 ~f-Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~  226 (318)
T cd05477         157 VF-GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQS  226 (318)
T ss_pred             EE-cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHH
Confidence            99 9999999999999874321 1110      0         0   013346677777787777777664

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten

>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases

Probab=99.97  E-value=4e-31  Score=250.55  Aligned_cols=203  Identities=38%  Similarity=0.665  Sum_probs=169.0

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc--------ccccceeeeecccCccCCCcEEEEEeCCceEEEE
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD--------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGY   87 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~--------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~   87 (336)
                      ....|.+++.+|+|+|..    .+.+||||+++||++.        |..++.|+|++|+|++..++.|.+.|++|+++|.
T Consensus         8 ~~~~Y~~~i~vGtP~q~~----~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~G~   83 (329)
T cd05485           8 MDAQYYGVITIGTPPQSF----KVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLSGF   83 (329)
T ss_pred             cCCeEEEEEEECCCCcEE----EEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEEEE
Confidence            346799999999998854    7889999999999974        3346789999999999999999999999999999


Q ss_pred             EeEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCC
Q psy3214          88 LSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKL  167 (336)
Q Consensus        88 ~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~  167 (336)
                      +++|+|++|+.++++|.||++..+++..|...+.+||||||++..+.....|++.+|++||+|++++||+||.+ +....
T Consensus        84 ~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~-~~~~~  162 (329)
T cd05485          84 LSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNR-DPSAK  162 (329)
T ss_pred             EecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecC-CCCCC
Confidence            99999999999999999999988766556667789999999998876677889999999999999999999998 54444


Q ss_pred             CCceEEecCCCCCcccccccceeEecCC-ccc-------cC------C---CccccchhhhhhhHHHHHHHhcc
Q psy3214         168 ANGEVPIPSAHDPKELESRIENKYQLPE-YDH-------VG------D---GCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       168 ~~G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~-------~~------~---~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      .+|+|+| ||+|+++|.|++.|++.... +|.       ..      .   ...++++++..++...++++...
T Consensus       163 ~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~  235 (329)
T cd05485         163 EGGELIL-GGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFCSGGCQAIADTGTSLIAGPVDEIEKLNNA  235 (329)
T ss_pred             CCcEEEE-cccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeecCCCcEEEEccCCcceeCCHHHHHHHHHH
Confidence            6899999 99999999999998754321 111       00      0   13446788888888887777654

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an

>PTZ00147 plasmepsin-1; Provisional

Probab=99.97  E-value=8.5e-31  Score=256.40  Aligned_cols=201  Identities=21%  Similarity=0.375  Sum_probs=164.3

Q ss_pred             eCccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEE
Q psy3214          15 LTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYL   88 (336)
Q Consensus        15 i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~   88 (336)
                      +.-..|..++.+|+|+|-    +.+.+||||+++||++.      |..++.|+|++|+||+..++.+++.||+|+++|.+
T Consensus       135 ~~n~~Y~~~I~IGTP~Q~----f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~GsvsG~~  210 (453)
T PTZ00147        135 LANVMSYGEAKLGDNGQK----FNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDGTKVEMNYVSGTVSGFF  210 (453)
T ss_pred             cCCCEEEEEEEECCCCeE----EEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECCCEEEEEeCCCCEEEEE
Confidence            445678999999999986    47889999999999974      34578999999999999999999999999999999


Q ss_pred             eEEEEEECCeEEeceEEEEEEeeCCc--ccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCC
Q psy3214          89 SQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK  166 (336)
Q Consensus        89 ~~D~v~ig~~~v~~~~fg~~~~~~~~--~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~  166 (336)
                      ++|+|+||+.+++ +.|+++....+.  .+....+|||||||++.++.....|++++|++|++|++++||+||++ +  .
T Consensus       211 ~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~-~--~  286 (453)
T PTZ00147        211 SKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPP-E--D  286 (453)
T ss_pred             EEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecC-C--C
Confidence            9999999999998 568877765431  23455789999999998887778899999999999999999999987 3  2


Q ss_pred             CCCceEEecCCCCCcccccccceeEecCC-ccc------c-------CCCccccchhhhhhhHHHHHHHhcc
Q psy3214         167 LANGEVPIPSAHDPKELESRIENKYQLPE-YDH------V-------GDGCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       167 ~~~G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~------~-------~~~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      ..+|+|+| ||+|+++|+|+|.|++.... +|.      .       .....++++++...+...++++.+.
T Consensus       287 ~~~G~L~f-GGiD~~ky~G~l~y~pl~~~~~W~V~l~~~vg~~~~~~~~aIiDSGTsli~lP~~~~~ai~~~  357 (453)
T PTZ00147        287 KHKGYLTI-GGIEERFYEGPLTYEKLNHDLYWQVDLDVHFGNVSSEKANVIVDSGTSVITVPTEFLNKFVES  357 (453)
T ss_pred             CCCeEEEE-CCcChhhcCCceEEEEcCCCceEEEEEEEEECCEecCceeEEECCCCchhcCCHHHHHHHHHH
Confidence            35799999 99999999999999743321 121      0       1123447788888888887777664

>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily

Probab=99.97  E-value=2.4e-30  Score=244.26  Aligned_cols=200  Identities=34%  Similarity=0.612  Sum_probs=166.1

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQ   90 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~   90 (336)
                      ...|.+++.+|+|.|-    +.+.+||||+++||++.      |..++.|+|++|+||+.+++.+.+.|++|+++|.+++
T Consensus         8 ~~~Y~~~i~iGtp~q~----~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G~~~~   83 (320)
T cd05488           8 NAQYFTDITLGTPPQK----FKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEGFVSQ   83 (320)
T ss_pred             CCEEEEEEEECCCCcE----EEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCCCEEEEEECCceEEEEEEE
Confidence            4569999999999885    47889999999999974      4457899999999999999999999999999999999


Q ss_pred             EEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCc
Q psy3214          91 DTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG  170 (336)
Q Consensus        91 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G  170 (336)
                      |+|+++++++++|.||++...++..|.....|||||||++..+..+..|.+.+|++||+|++++||+||++ +  ...+|
T Consensus        84 D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~-~--~~~~G  160 (320)
T cd05488          84 DTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGS-S--EEDGG  160 (320)
T ss_pred             eEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecC-C--CCCCc
Confidence            99999999999999999987766555556789999999998876666788899999999999999999998 3  24579


Q ss_pred             eEEecCCCCCcccccccceeEecC-Cccc-------cC------C---CccccchhhhhhhHHHHHHHhcc
Q psy3214         171 EVPIPSAHDPKELESRIENKYQLP-EYDH-------VG------D---GCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       171 ~l~f~GGiD~~~~~G~l~~~~~~~-~~~~-------~~------~---~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      +|+| ||+|+++|.|++.|++... .+|.       ..      .   ...++++.+..++..+++++...
T Consensus       161 ~l~f-Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~ivDSGtt~~~lp~~~~~~l~~~  230 (320)
T cd05488         161 EATF-GGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELELENTGAAIDTGTSLIALPSDLAEMLNAE  230 (320)
T ss_pred             EEEE-CCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEeccCCCeEEEcCCcccccCCHHHHHHHHHH
Confidence            9999 9999999999999975432 1221       00      0   12336777888888887776653

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro

>PTZ00013 plasmepsin 4 (PM4); Provisional

Probab=99.97  E-value=4.4e-30  Score=250.98  Aligned_cols=199  Identities=20%  Similarity=0.377  Sum_probs=159.8

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEe
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLS   89 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~   89 (336)
                      .-..|..++.+|+|+|-.    .+.+||||+++||++.      |..++.|+|++|+||+..++.+++.||+|+++|.++
T Consensus       135 ~n~~Yy~~i~IGTP~Q~f----~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~Gsv~G~~~  210 (450)
T PTZ00013        135 ANIMFYGEGEVGDNHQKF----MLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFS  210 (450)
T ss_pred             CCCEEEEEEEECCCCeEE----EEEEeCCCCceEEecccCCccccccCCCccCccCcccccCCcEEEEEECCceEEEEEE
Confidence            345688899999999854    7889999999999964      445778999999999999999999999999999999


Q ss_pred             EEEEEECCeEEeceEEEEEEeeCC--cccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCC
Q psy3214          90 QDTLRIGDLTIKNQVFGEAIKEPG--FTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKL  167 (336)
Q Consensus        90 ~D~v~ig~~~v~~~~fg~~~~~~~--~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~  167 (336)
                      +|+|++|+++++ +.|+++.....  ..+....+|||||||++.++..+..|++++|++||+|++++||+||++ +  ..
T Consensus       211 ~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~-~--~~  286 (450)
T PTZ00013        211 KDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPV-H--DV  286 (450)
T ss_pred             EEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecC-C--CC
Confidence            999999999998 57777765532  234456789999999998877778899999999999999999999987 3  23


Q ss_pred             CCceEEecCCCCCcccccccceeEecCC-ccc------c-------CCCccccchhhhhhhHHHHHHHhc
Q psy3214         168 ANGEVPIPSAHDPKELESRIENKYQLPE-YDH------V-------GDGCSASYTEMQQWTNNIIEAINQ  223 (336)
Q Consensus       168 ~~G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~------~-------~~~~~~s~t~l~~w~~~i~~~i~~  223 (336)
                      .+|+|+| ||+|+++|+|+|.|++.... +|.      .       ..+..++++++...+...++++.+
T Consensus       287 ~~G~L~f-GGiD~~~y~G~L~y~pv~~~~yW~I~l~v~~G~~~~~~~~aIlDSGTSli~lP~~~~~~i~~  355 (450)
T PTZ00013        287 HAGYLTI-GGIEEKFYEGNITYEKLNHDLYWQIDLDVHFGKQTMQKANVIVDSGTTTITAPSEFLNKFFA  355 (450)
T ss_pred             CCCEEEE-CCcCccccccceEEEEcCcCceEEEEEEEEECceeccccceEECCCCccccCCHHHHHHHHH
Confidence            5899999 99999999999999743221 111      0       012344667777777766666654

>PF03723 Hemocyanin_C: Hemocyanin, ig-like domain; InterPro: IPR005203 Haemocyanins are copper-containing oxygen transport proteins found in the haemolymph of many invertebrates

Probab=99.97  E-value=6.5e-31  Score=237.44  Aligned_cols=101  Identities=34%  Similarity=0.647  Sum_probs=80.3

Q ss_pred             eeecCCCeEEeEEEEeccCCCCCcceeeeeeeecccccccccc-ccccccc---ccccCCCCcEEEEEEecCCCceeeEE
Q psy3214         227 VTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKE-LTEEYNI---PYHIQHEDFKYEITIENNSNETKTGI  302 (336)
Q Consensus       227 ~~L~~pgv~i~~v~v~~~~gp~~~l~T~~~~~~~dl~~~~~~~-~~~~~~~---~~~L~h~pF~y~i~v~n~s~~~~~~~  302 (336)
                      .+|.+|||+|++|+|       ++|.|||+.+++|++|+.+.. ...++.+   ++|||||||+|+|+|+  |+++++++
T Consensus         6 ~eL~fpgV~I~~V~v-------~~L~Tyfe~~~~dlsn~~~~~~~~~~~~v~ar~~rLnHkpF~y~i~V~--s~~~~~~~   76 (250)
T PF03723_consen    6 EELSFPGVKIENVEV-------DKLVTYFEDFDFDLSNALDFTEFEDDVSVKARQPRLNHKPFTYKINVN--SDKAQDAV   76 (250)
T ss_dssp             HHH--TTEEEEEEEE-------ESEEEEEEEEEEEGGGCSTTTTTCTSS-EEEEEEEEEE--EEEEEEEE--ESSSSEEE
T ss_pred             HHCcCCCEEEEEEEE-------CeEEEEEEeEEEEhhhccccccccCceeEEEEEeecCCCcEEEEEEEE--cCCCCeEE
Confidence            789999999999999       889999999999999865443 1133333   8999999999999995  45678889


Q ss_pred             EEEEEceecCCCCCcccccccccceEEeeeeeeC
Q psy3214         303 MRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH  336 (336)
Q Consensus       303 vrifl~Pk~d~~g~~~~~~~~r~~~ielD~f~~~  336 (336)
                      ||||||||||++|++|+++++|++|||||||+++
T Consensus        77 VRiFL~Pk~D~~G~~~~l~e~r~~~iElDkF~~~  110 (250)
T PF03723_consen   77 VRIFLGPKYDENGREISLNEQRWNFIELDKFVVK  110 (250)
T ss_dssp             EEEEEEESB-TTSCB--HHHHCCC-EEEEEEEEE
T ss_pred             EEEEeCcccccCCCCccHHHhcceeEEeEEEEEE
Confidence            9999999999999999999999999999999974

They are divided into 2 main groups, arthropodan and molluscan. These have structurally similar oxygen-binding centres, which are similar to the oxygen-binding centre of tyrosinases [], but their quaternary structures are arranged differently. The arthropodan proteins exist as hexamers comprising 3 heterogeneous subunits (a, b and c) and possess 1 oxygen-binding centre per subunit; and the molluscan proteins exist as cylindrical oligomers of 10 to 20 subunits and possess 7 or 8 oxygen-binding centres per subunit []. Although the proteins have similar amino acid compositions, the only real similarity in their primary sequences is in the region corresponding to the second copper-binding domain, which also shows similarity to the copper-binding domain of tyrosinases []. Larval storage proteins (LSP) [] are proteins from the hemolymph of insects, which may serve as a store of amino acids for synthesis of adult proteins. There are two classes of LSP's, arylphorins, which are rich in aromatic amino acids, and methionine-rich LSP's. LSP's forms hexameric complexes. LSP's are structurally related to arthropods hemocyanins.; PDB: 3HHS_A 1HCY_A 1HC1_C 1LL1_A 1NOL_A 1LLA_A 1OXY_A 3IXV_E 3IXW_L 3GWJ_F ....

>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin

Probab=99.96  E-value=2.8e-29  Score=232.40  Aligned_cols=192  Identities=21%  Similarity=0.319  Sum_probs=154.8

Q ss_pred             ceeEeccCCccceecccccCcCCCCCCCcEEEcccc------ccceeeeecccCccC-CCcEEEEEeCCce-EEEEEeEE
Q psy3214          20 YVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVF------IGKFYTVFDMDNNQK-NGTQFAIRYGSGA-VSGYLSQD   91 (336)
Q Consensus        20 y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~------~~~~y~~~~Sst~~~-~~~~~~i~Yg~Gs-~~G~~~~D   91 (336)
                      |.+++.+|+|+|..    .+.+||||+++||++..|      .++.|++++|+|++. .++++.+.|++|+ ++|.+++|
T Consensus         1 Y~~~i~vGtP~Q~~----~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D   76 (278)
T cd06097           1 YLTPVKIGTPPQTL----NLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTD   76 (278)
T ss_pred             CeeeEEECCCCcEE----EEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEE
Confidence            78899999999864    688999999999997522      356799999999987 5789999999997 99999999


Q ss_pred             EEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccC---CCCchHHHHHHhcccCCCeEEEEeecCCCCCCC
Q psy3214          92 TLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVD---GVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLA  168 (336)
Q Consensus        92 ~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~---~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~  168 (336)
                      +|+||+.++++|.||+++..++..+....+|||||||++..+..   ...+++++|++|+.  +++||+||++ +    .
T Consensus        77 ~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~-~----~  149 (278)
T cd06097          77 TVSIGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRK-A----A  149 (278)
T ss_pred             EEEECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecC-C----C
Confidence            99999999999999999988754566678999999999877542   45689999999965  7999999987 2    3


Q ss_pred             CceEEecCCCCCcccccccceeEecC--Ccccc-------C-------C---CccccchhhhhhhHHHHHHHhc
Q psy3214         169 NGEVPIPSAHDPKELESRIENKYQLP--EYDHV-------G-------D---GCSASYTEMQQWTNNIIEAINQ  223 (336)
Q Consensus       169 ~G~l~f~GGiD~~~~~G~l~~~~~~~--~~~~~-------~-------~---~~~~s~t~l~~w~~~i~~~i~~  223 (336)
                      .|+|+| ||+|+++|.|+|.|++...  .+|.+       .       .   ...++++++..++..+++++..
T Consensus       150 ~G~l~f-Gg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~~~~~l~~  222 (278)
T cd06097         150 PGFYTF-GYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDAIVEAYYS  222 (278)
T ss_pred             CcEEEE-eccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHHHHHHHHH
Confidence            799999 9999999999999986553  22210       0       0   1233567777777766666554

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-

>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077

Probab=99.95  E-value=3.5e-28  Score=228.17  Aligned_cols=198  Identities=28%  Similarity=0.449  Sum_probs=160.7

Q ss_pred             CceeEeccCCccceecccccCcCCCCCCCcEEEcc-------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeEE
Q psy3214          19 DYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQD   91 (336)
Q Consensus        19 ~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D   91 (336)
                      +|.+++.+|+|+|..    .+.+||||+++||.+.       |..+..|++.+|+|++..+..+.+.|++|+++|.++.|
T Consensus         1 ~Y~~~v~iGtp~q~~----~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D   76 (317)
T PF00026_consen    1 QYYINVTIGTPPQTF----RVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSD   76 (317)
T ss_dssp             EEEEEEEETTTTEEE----EEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CeEEEEEECCCCeEE----EEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccc
Confidence            589999999998864    7889999999999963       34567999999999999999999999999999999999


Q ss_pred             EEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCC-CCchHHHHHHhcccCCCeEEEEeecCCCCCCCCc
Q psy3214          92 TLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDG-VEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG  170 (336)
Q Consensus        92 ~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~-~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G  170 (336)
                      +|+|++++++++.||++...++..+....++||||||++..+... ..+++++|++||+|++++||++|++ ..  ...|
T Consensus        77 ~v~ig~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~-~~--~~~g  153 (317)
T PF00026_consen   77 TVSIGGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNP-SD--SQNG  153 (317)
T ss_dssp             EEEETTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEES-TT--SSEE
T ss_pred             eEeeeeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeee-cc--cccc
Confidence            999999999999999999976655667888999999998876554 7899999999999999999999999 32  5689


Q ss_pred             eEEecCCCCCcccccccceeEecC-Cccc------cCC-----------CccccchhhhhhhHHHHHHHhcc
Q psy3214         171 EVPIPSAHDPKELESRIENKYQLP-EYDH------VGD-----------GCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       171 ~l~f~GGiD~~~~~G~l~~~~~~~-~~~~------~~~-----------~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      +|+| ||+|+++|+|++.|.+... .+|.      ...           ...++++....++..+++.+.+.
T Consensus       154 ~l~~-Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~  224 (317)
T PF00026_consen  154 SLTF-GGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIYLPRSIFDAIIKA  224 (317)
T ss_dssp             EEEE-SSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEEEEHHHHHHHHHH
T ss_pred             hhee-eccccccccCceeccCcccccccccccccccccccccccccceeeecccccccccccchhhHHHHhh
Confidence            9999 9999999999999874441 1111      000           11224566667777777666665

; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....

>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease

Probab=99.95  E-value=1.1e-27  Score=229.92  Aligned_cols=201  Identities=18%  Similarity=0.254  Sum_probs=153.9

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-c-cccceeeeecccCccCCCcEEEEEeCCceEEEEEeEEEEE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-V-FIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLR   94 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c-~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D~v~   94 (336)
                      +..|.+++.+|+|+|-    +.+.|||||+++||++. | ..++.|+|++|+||+..++.|+|.||+|+++|.+++|+|+
T Consensus         1 ~~~Y~~~i~iGtP~Q~----~~v~~DTGSs~lWv~~~~~~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~   76 (364)
T cd05473           1 GQGYYIEMLIGTPPQK----LNILVDTGSSNFAVAAAPHPFIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS   76 (364)
T ss_pred             CCceEEEEEecCCCce----EEEEEecCCcceEEEcCCCccccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence            3579999999999885    47899999999999986 3 3577999999999999999999999999999999999999


Q ss_pred             ECCeEEeceE----EEEEEeeCCcccccccccccccCccccccc--CCCCchHHHHHHhcccCCCeEEEEeecC----CC
Q psy3214          95 IGDLTIKNQV----FGEAIKEPGFTFVAAKFDGILGMGYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNRY----NT  164 (336)
Q Consensus        95 ig~~~v~~~~----fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~--~~~~~~~~~l~~q~~i~~~~Fs~~l~~~----~~  164 (336)
                      |++.  .++.    |+.+....+..+....+|||||||++.++.  ....|++++|++|+.+ +++||+||+..    +.
T Consensus        77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~  153 (364)
T cd05473          77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG  153 (364)
T ss_pred             ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence            9863  2333    344443332112234679999999998763  3468999999999997 58999999741    11


Q ss_pred             --CCCCCceEEecCCCCCcccccccceeEecCCc-------cc-------c--------CCCccccchhhhhhhHHHHHH
Q psy3214         165 --EKLANGEVPIPSAHDPKELESRIENKYQLPEY-------DH-------V--------GDGCSASYTEMQQWTNNIIEA  220 (336)
Q Consensus       165 --~~~~~G~l~f~GGiD~~~~~G~l~~~~~~~~~-------~~-------~--------~~~~~~s~t~l~~w~~~i~~~  220 (336)
                        ....+|+|+| ||+|+++|.|+|.|++.....       +.       .        .....++++++..++..++++
T Consensus       154 ~~~~~~~g~l~f-Gg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~  232 (364)
T cd05473         154 SASGTVGGSMVI-GGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNA  232 (364)
T ss_pred             ccccCCCcEEEe-CCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHH
Confidence              2235899999 999999999999987443211       10       0        012345788899999988888


Q ss_pred             Hhccc
Q psy3214         221 INQGY  225 (336)
Q Consensus       221 i~~g~  225 (336)
                      +.+..
T Consensus       233 l~~~l  237 (364)
T cd05473         233 AVDAI  237 (364)
T ss_pred             HHHHH
Confidence            77764

Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two

>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

Probab=99.93  E-value=2.7e-25  Score=205.02  Aligned_cols=168  Identities=31%  Similarity=0.547  Sum_probs=145.8

Q ss_pred             ceeEeccCCccceecccccCcCCCCCCCcEEEccccc------cce--eeeecccCccCCCcEEEEEeCCceEEEEEeEE
Q psy3214          20 YVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFI------GKF--YTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQD   91 (336)
Q Consensus        20 y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~------~~~--y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D   91 (336)
                      |.+++.+|+|.|-    +.+.+||||+++||.+..|.      ...  |++..|+++....+.+.+.|++|+++|.++.|
T Consensus         1 Y~~~i~iGtp~q~----~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D   76 (283)
T cd05471           1 YYGEITIGTPPQK----FSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTD   76 (283)
T ss_pred             CEEEEEECCCCcE----EEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEe
Confidence            7888999999875    47889999999999986321      122  78899999999999999999999999999999


Q ss_pred             EEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCce
Q psy3214          92 TLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGE  171 (336)
Q Consensus        92 ~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G~  171 (336)
                      +|++++.+++++.||++..... .+.....+||||||++..+.....+++++|.+|++|.+++||+||.+ .......|.
T Consensus        77 ~v~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~-~~~~~~~g~  154 (283)
T cd05471          77 TVTIGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGR-DGDGGNGGE  154 (283)
T ss_pred             EEEECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcC-CCCCCCCCE
Confidence            9999999999999999998874 45566789999999988776677899999999999999999999998 322357899


Q ss_pred             EEecCCCCCcccccccceeEecC
Q psy3214         172 VPIPSAHDPKELESRIENKYQLP  194 (336)
Q Consensus       172 l~f~GGiD~~~~~G~l~~~~~~~  194 (336)
                      |+| ||+|++++.|++.|++...
T Consensus       155 l~~-Gg~d~~~~~~~~~~~p~~~  176 (283)
T cd05471         155 LTF-GGIDPSKYTGDLTYTPVVS  176 (283)
T ss_pred             EEE-cccCccccCCceEEEecCC
Confidence            999 9999999999999976554

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu

>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite

Probab=99.92  E-value=1.2e-24  Score=205.95  Aligned_cols=193  Identities=17%  Similarity=0.267  Sum_probs=149.9

Q ss_pred             CceeEeccCCccceecccccCcCCCCCCCcEEEcc-c---c--ccceeeeecccCccC----------------CCcEEE
Q psy3214          19 DYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-V---F--IGKFYTVFDMDNNQK----------------NGTQFA   76 (336)
Q Consensus        19 ~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c---~--~~~~y~~~~Sst~~~----------------~~~~~~   76 (336)
                      .|.+++.+|+|+|-    +.+.+||||+++||++. |   .  .++.|+|++|+|++.                .++.+.
T Consensus         3 ~Y~~~i~vGtP~Q~----~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~   78 (326)
T cd06096           3 YYFIDIFIGNPPQK----QSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS   78 (326)
T ss_pred             eEEEEEEecCCCeE----EEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence            58999999999885    47889999999999975 2   1  246899999999986                357999


Q ss_pred             EEeCCce-EEEEEeEEEEEECCeEEe-------ceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhc
Q psy3214          77 IRYGSGA-VSGYLSQDTLRIGDLTIK-------NQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQK  148 (336)
Q Consensus        77 i~Yg~Gs-~~G~~~~D~v~ig~~~v~-------~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~  148 (336)
                      |.||+|+ +.|.+++|+|+|++..++       ++.||++....+ .|.....+||||||++..+.  ..++...|++++
T Consensus        79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~  155 (326)
T cd06096          79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR  155 (326)
T ss_pred             EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence            9999998 899999999999987653       467999887764 45556789999999987543  234455688887


Q ss_pred             ccCC--CeEEEEeecCCCCCCCCceEEecCCCCCcccc----------cccceeEecCCc-cc-------c---------
Q psy3214         149 LLEK--NVFGFYLNRYNTEKLANGEVPIPSAHDPKELE----------SRIENKYQLPEY-DH-------V---------  199 (336)
Q Consensus       149 ~i~~--~~Fs~~l~~~~~~~~~~G~l~f~GGiD~~~~~----------G~l~~~~~~~~~-~~-------~---------  199 (336)
                      .+..  ++||+||++ +     +|+|+| ||+|+++|.          +++.|++..... +.       .         
T Consensus       156 ~~~~~~~~FS~~l~~-~-----~G~l~~-Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~  228 (326)
T cd06096         156 PKLKKDKIFSICLSE-D-----GGELTI-GGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGN  228 (326)
T ss_pred             ccccCCceEEEEEcC-C-----CeEEEE-CccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceec
Confidence            7765  999999998 2     699999 999999998          788887543221 10       0         


Q ss_pred             ---CCCccccchhhhhhhHHHHHHHhccc
Q psy3214         200 ---GDGCSASYTEMQQWTNNIIEAINQGY  225 (336)
Q Consensus       200 ---~~~~~~s~t~l~~w~~~i~~~i~~g~  225 (336)
                         .....++++++...+..+++++....
T Consensus       229 ~~~~~aivDSGTs~~~lp~~~~~~l~~~~  257 (326)
T cd06096         229 TKGLGMLVDSGSTLSHFPEDLYNKINNFF  257 (326)
T ss_pred             ccCCCEEEeCCCCcccCCHHHHHHHHhhc
Confidence               00134477888888888888877654

The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l

>KOG1339|consensus

Probab=99.92  E-value=3.9e-25  Score=214.73  Aligned_cols=195  Identities=26%  Similarity=0.455  Sum_probs=154.8

Q ss_pred             cCceeEeccCCccceecccccCcCCCCCCCcEEEccccc------cce-eeeecccCccCCCc-E---------------
Q psy3214          18 TDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFI------GKF-YTVFDMDNNQKNGT-Q---------------   74 (336)
Q Consensus        18 ~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~------~~~-y~~~~Sst~~~~~~-~---------------   74 (336)
                      ..|..++.+|+|.|..    .+.+||||+++||++.+|.      +.. |+|++|+||+..++ .               
T Consensus        45 ~~Y~~~i~IGTPpq~f----~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~  120 (398)
T KOG1339|consen   45 GEYYGNISIGTPPQSF----TVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSS  120 (398)
T ss_pred             cccEEEEecCCCCeee----EEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCc
Confidence            3799999999999864    6889999999999985442      444 99999999999773 3               


Q ss_pred             --EEEEeCCce-EEEEEeEEEEEECC---eEEeceEEEEEEeeCCccccc-ccccccccCcccccccCCCCchHHHHHHh
Q psy3214          75 --FAIRYGSGA-VSGYLSQDTLRIGD---LTIKNQVFGEAIKEPGFTFVA-AKFDGILGMGYDNIAVDGVEPPFYNIIQQ  147 (336)
Q Consensus        75 --~~i~Yg~Gs-~~G~~~~D~v~ig~---~~v~~~~fg~~~~~~~~~~~~-~~~dGIlGLg~~~~s~~~~~~~~~~l~~q  147 (336)
                        |.|.||+|+ ++|.+++|+|++++   +.++++.||++...++. +.. .++|||||||+..++..+..+.+.++.  
T Consensus       121 C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~--  197 (398)
T KOG1339|consen  121 CPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLPSFYNAI--  197 (398)
T ss_pred             CceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeecccccCCc--
Confidence              999999955 99999999999998   88888999999998875 555 678999999999988766655444443  


Q ss_pred             cccCCCeEEEEeecCCCCC-CCCceEEecCCCCCcccccccceeEecCCc---cc-------cC--------------C-
Q psy3214         148 KLLEKNVFGFYLNRYNTEK-LANGEVPIPSAHDPKELESRIENKYQLPEY---DH-------VG--------------D-  201 (336)
Q Consensus       148 ~~i~~~~Fs~~l~~~~~~~-~~~G~l~f~GGiD~~~~~G~l~~~~~~~~~---~~-------~~--------------~-  201 (336)
                           ++||+||.+ +... ..+|.|+| ||+|+.++.|+++|++.....   +.       +.              . 
T Consensus       198 -----~~FS~cL~~-~~~~~~~~G~i~f-G~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~  270 (398)
T KOG1339|consen  198 -----NVFSYCLSS-NGSPSSGGGSIIF-GGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGG  270 (398)
T ss_pred             -----eeEEEEeCC-CCCCCCCCcEEEE-CCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCCCC
Confidence                 299999999 4322 36899999 999999999999998654332   11       11              0 


Q ss_pred             CccccchhhhhhhHHHHHHHhccce
Q psy3214         202 GCSASYTEMQQWTNNIIEAINQGYA  226 (336)
Q Consensus       202 ~~~~s~t~l~~w~~~i~~~i~~g~~  226 (336)
                      ...++++.+.+.+..+++++.+...
T Consensus       271 ~iiDSGTs~t~lp~~~y~~i~~~~~  295 (398)
T KOG1339|consen  271 AIIDSGTSLTYLPTSAYNALREAIG  295 (398)
T ss_pred             EEEECCcceeeccHHHHHHHHHHHH
Confidence            1334778888888888888887754

>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

Probab=99.91  E-value=6.9e-24  Score=197.60  Aligned_cols=170  Identities=22%  Similarity=0.334  Sum_probs=137.5

Q ss_pred             CceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeeeecccCccCCCcEEEEEeCCc-eEEEEEeEEEEEECC
Q psy3214          19 DYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSG-AVSGYLSQDTLRIGD   97 (336)
Q Consensus        19 ~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~~~Sst~~~~~~~~~i~Yg~G-s~~G~~~~D~v~ig~   97 (336)
                      -|.+++.+|+|.|-    +.+.+||||+++||+                      ++++.|++| +++|.+++|+|++++
T Consensus         2 ~Y~~~i~iGtp~q~----~~v~~DTgS~~~wv~----------------------~~~~~Y~~g~~~~G~~~~D~v~~g~   55 (295)
T cd05474           2 YYSAELSVGTPPQK----VTVLLDTGSSDLWVP----------------------DFSISYGDGTSASGTWGTDTVSIGG   55 (295)
T ss_pred             eEEEEEEECCCCcE----EEEEEeCCCCcceee----------------------eeEEEeccCCcEEEEEEEEEEEECC
Confidence            48999999999985    478899999999998                      789999996 599999999999999


Q ss_pred             eEEeceEEEEEEeeCCcccccccccccccCccccccc-----CCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCceE
Q psy3214          98 LTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAV-----DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV  172 (336)
Q Consensus        98 ~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~-----~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G~l  172 (336)
                      .+++++.||+++...       ..+||||||++..+.     ...++++++|++||+|++++||+||.+ .  ....|.|
T Consensus        56 ~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~-~--~~~~g~l  125 (295)
T cd05474          56 ATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLND-L--DASTGSI  125 (295)
T ss_pred             eEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCC-C--CCCceeE
Confidence            999999999998742       358999999988743     245689999999999999999999998 3  2357999


Q ss_pred             EecCCCCCcccccccceeEecCC-------ccc-------c----------C---CCccccchhhhhhhHHHHHHHhccc
Q psy3214         173 PIPSAHDPKELESRIENKYQLPE-------YDH-------V----------G---DGCSASYTEMQQWTNNIIEAINQGY  225 (336)
Q Consensus       173 ~f~GGiD~~~~~G~l~~~~~~~~-------~~~-------~----------~---~~~~~s~t~l~~w~~~i~~~i~~g~  225 (336)
                      +| ||+|+++|.|+++|++....       ++.       .          .   ....++++++..++..+++++.+..
T Consensus       126 ~~-Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~  204 (295)
T cd05474         126 LF-GGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQL  204 (295)
T ss_pred             EE-eeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHHh
Confidence            99 99999999999998754432       110       0          0   0123366777788887877777653

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases

>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

Probab=99.88  E-value=1.9e-22  Score=185.44  Aligned_cols=137  Identities=20%  Similarity=0.325  Sum_probs=116.5

Q ss_pred             CceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeeeecccCccCCCcEEEEEeCCce-EEEEEeEEEEEECC
Q psy3214          19 DYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGA-VSGYLSQDTLRIGD   97 (336)
Q Consensus        19 ~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs-~~G~~~~D~v~ig~   97 (336)
                      +|.+++.+|+|.|-    +.+.+||||+++||++                    +.+.+.|++|+ ++|.+++|+|+|++
T Consensus         1 ~Y~~~i~iGtP~q~----~~v~~DTGSs~~wv~~--------------------~~~~~~Y~dg~~~~G~~~~D~v~~g~   56 (265)
T cd05476           1 EYLVTLSIGTPPQP----FSLIVDTGSDLTWTQC--------------------CSYEYSYGDGSSTSGVLATETFTFGD   56 (265)
T ss_pred             CeEEEEecCCCCcc----eEEEecCCCCCEEEcC--------------------CceEeEeCCCceeeeeEEEEEEEecC
Confidence            58999999999885    4788999999999973                    57899999775 99999999999999


Q ss_pred             e--EEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCceEEec
Q psy3214          98 L--TIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIP  175 (336)
Q Consensus        98 ~--~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G~l~f~  175 (336)
                      .  +++++.||++...++  +.....+||||||++..      ++..+|..++    ++||+||.+ +.....+|+|+| 
T Consensus        57 ~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~------s~~~ql~~~~----~~Fs~~l~~-~~~~~~~G~l~f-  122 (265)
T cd05476          57 SSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPL------SLVSQLGSTG----NKFSYCLVP-HDDTGGSSPLIL-  122 (265)
T ss_pred             CCCccCCEEEEecccccC--CccCCCCEEEECCCCcc------cHHHHhhccc----CeeEEEccC-CCCCCCCCeEEE-
Confidence            8  899999999998874  55667899999998654      3566777665    899999998 433456899999 


Q ss_pred             CCCCCcccccccceeEecC
Q psy3214         176 SAHDPKELESRIENKYQLP  194 (336)
Q Consensus       176 GGiD~~~~~G~l~~~~~~~  194 (336)
                      ||+|++ |.|++.|++...
T Consensus       123 Gg~d~~-~~~~l~~~p~~~  140 (265)
T cd05476         123 GDAADL-GGSGVVYTPLVK  140 (265)
T ss_pred             CCcccc-cCCCceEeeccc
Confidence            999999 999999976554

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase

Probab=99.87  E-value=4.7e-22  Score=185.92  Aligned_cols=169  Identities=19%  Similarity=0.324  Sum_probs=129.2

Q ss_pred             CceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeeeecccCccCCCcEEEEEeCCce-EEEEEeEEEEEECC
Q psy3214          19 DYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGA-VSGYLSQDTLRIGD   97 (336)
Q Consensus        19 ~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs-~~G~~~~D~v~ig~   97 (336)
                      +|.+++.+|+|+|.    +.+.+||||+++||.+..|                 +.|.+.|++|+ ++|.+++|+|+|++
T Consensus         1 ~Y~~~i~iGtP~q~----~~v~~DTGSs~~Wv~c~~c-----------------~~~~i~Yg~Gs~~~G~~~~D~v~ig~   59 (299)
T cd05472           1 EYVVTVGLGTPARD----QTVIVDTGSDLTWVQCQPC-----------------CLYQVSYGDGSYTTGDLATDTLTLGS   59 (299)
T ss_pred             CeEEEEecCCCCcc----eEEEecCCCCcccccCCCC-----------------CeeeeEeCCCceEEEEEEEEEEEeCC
Confidence            58999999999985    4789999999999975322                 68999999999 68999999999999


Q ss_pred             e-EEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCceEEecC
Q psy3214          98 L-TIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPS  176 (336)
Q Consensus        98 ~-~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G~l~f~G  176 (336)
                      . .++++.||++...++ .+.  ..+||||||++..+      +..+|..+   .+++||+||++ .. ...+|+|+| |
T Consensus        60 ~~~~~~~~Fg~~~~~~~-~~~--~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~-~~-~~~~G~l~f-G  124 (299)
T cd05472          60 SDVVPGFAFGCGHDNEG-LFG--GAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPD-RS-SSSSGYLSF-G  124 (299)
T ss_pred             CCccCCEEEECCccCCC-ccC--CCCEEEECCCCcch------HHHHhhHh---hcCceEEEccC-CC-CCCCceEEe-C
Confidence            8 899999999987764 332  68999999987653      33445443   35899999987 32 246899999 9


Q ss_pred             CCCCcccccccceeEecCC-----ccc-------cC--------------CCccccchhhhhhhHHHHHHHhccc
Q psy3214         177 AHDPKELESRIENKYQLPE-----YDH-------VG--------------DGCSASYTEMQQWTNNIIEAINQGY  225 (336)
Q Consensus       177 GiD~~~~~G~l~~~~~~~~-----~~~-------~~--------------~~~~~s~t~l~~w~~~i~~~i~~g~  225 (336)
                      |+|++  +|++.|++....     ++.       +.              ....++++++.+.+..+++++.+..
T Consensus       125 g~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l  197 (299)
T cd05472         125 AAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAF  197 (299)
T ss_pred             Ccccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHH
Confidence            99999  999998754421     111       00              1133467888888887777777653

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami

>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation

Probab=99.85  E-value=1.2e-20  Score=174.39  Aligned_cols=143  Identities=23%  Similarity=0.319  Sum_probs=114.7

Q ss_pred             CceeEeccCCccceecccccCcCCCCCCCcEEEcc-ccccceeeeecccCccCCCcEEEEEeCCc-eEEEEEeEEEEEEC
Q psy3214          19 DYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-VFIGKFYTVFDMDNNQKNGTQFAIRYGSG-AVSGYLSQDTLRIG   96 (336)
Q Consensus        19 ~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c~~~~~y~~~~Sst~~~~~~~~~i~Yg~G-s~~G~~~~D~v~ig   96 (336)
                      .|.+++.+|+|.|.+    .+.+||||+++||+++ +|..             .++.|++.||+| +++|.+++|+|+++
T Consensus         2 ~Y~~~i~iGtP~q~~----~v~~DTGS~~~Wv~c~~~c~~-------------c~c~~~i~Ygd~~~~~G~~~~D~v~~~   64 (273)
T cd05475           2 YYYVTINIGNPPKPY----FLDIDTGSDLTWLQCDAPCTG-------------CQCDYEIEYADGGSSMGVLVTDIFSLK   64 (273)
T ss_pred             ceEEEEEcCCCCeeE----EEEEccCCCceEEeCCCCCCC-------------CcCccEeEeCCCCceEEEEEEEEEEEe
Confidence            589999999999864    7889999999999752 1211             157899999965 59999999999995


Q ss_pred             ----CeEEeceEEEEEEeeCCcc-cccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCce
Q psy3214          97 ----DLTIKNQVFGEAIKEPGFT-FVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGE  171 (336)
Q Consensus        97 ----~~~v~~~~fg~~~~~~~~~-~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G~  171 (336)
                          +..++++.||++....+.. +...+.|||||||+...      +++++|.+|+++ +++||+||++ +    .+|.
T Consensus        65 ~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~------s~~~ql~~~~~i-~~~Fs~~l~~-~----~~g~  132 (273)
T cd05475          65 LTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKI------SLPSQLASQGII-KNVIGHCLSS-N----GGGF  132 (273)
T ss_pred             ecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCC------CHHHHHHhcCCc-CceEEEEccC-C----CCeE
Confidence                3578899999998765422 23457899999998653      578899999999 8999999987 3    3689


Q ss_pred             EEecCCCCCcccccccceeEec
Q psy3214         172 VPIPSAHDPKELESRIENKYQL  193 (336)
Q Consensus       172 l~f~GGiD~~~~~G~l~~~~~~  193 (336)
                      |+| |  |.+++.|++.|++..
T Consensus       133 l~~-G--~~~~~~g~i~ytpl~  151 (273)
T cd05475         133 LFF-G--DDLVPSSGVTWTPMR  151 (273)
T ss_pred             EEE-C--CCCCCCCCeeecccc
Confidence            999 8  667788999987544

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d

>PLN03146 aspartyl protease family protein; Provisional

Probab=99.84  E-value=1.6e-20  Score=183.94  Aligned_cols=192  Identities=16%  Similarity=0.310  Sum_probs=138.8

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc----cc--ccceeeeecccCccCCC------------------
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD----VF--IGKFYTVFDMDNNQKNG------------------   72 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~----c~--~~~~y~~~~Sst~~~~~------------------   72 (336)
                      ..+|++++.+|+|+|.+    .+.+||||+++||++.    |.  .+..|+|++|+||+...                  
T Consensus        82 ~~~Y~v~i~iGTPpq~~----~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~  157 (431)
T PLN03146         82 GGEYLMNISIGTPPVPI----LAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE  157 (431)
T ss_pred             CccEEEEEEcCCCCceE----EEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence            45899999999998864    7889999999999974    33  35689999999998742                  


Q ss_pred             --cEEEEEeCCce-EEEEEeEEEEEECC-----eEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHH
Q psy3214          73 --TQFAIRYGSGA-VSGYLSQDTLRIGD-----LTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNI  144 (336)
Q Consensus        73 --~~~~i~Yg~Gs-~~G~~~~D~v~ig~-----~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l  144 (336)
                        +.|.+.||+|+ +.|.+++|+|++++     .+++++.||++....+ .|. ...+||||||+..++      ++.+|
T Consensus       158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g-~f~-~~~~GilGLG~~~~S------l~sql  229 (431)
T PLN03146        158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGG-TFD-EKGSGIVGLGGGPLS------LISQL  229 (431)
T ss_pred             CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCC-Ccc-CCCceeEecCCCCcc------HHHHh
Confidence              78999999998 68999999999997     5699999999987765 343 257899999987553      45555


Q ss_pred             HHhcccCCCeEEEEeecCCCCCCCCceEEecCCCCCccccc-ccceeEecC----Cccc-------cC------------
Q psy3214         145 IQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELES-RIENKYQLP----EYDH-------VG------------  200 (336)
Q Consensus       145 ~~q~~i~~~~Fs~~l~~~~~~~~~~G~l~f~GGiD~~~~~G-~l~~~~~~~----~~~~-------~~------------  200 (336)
                      ..+  +. ++||+||.+.+.+....|.|+| ||.  +++.| .+.|++.+.    .++.       ++            
T Consensus       230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~f-G~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~  303 (431)
T PLN03146        230 GSS--IG-GKFSYCLVPLSSDSNGTSKINF-GTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKN  303 (431)
T ss_pred             hHh--hC-CcEEEECCCCCCCCCCcceEEe-CCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccc
Confidence            432  44 5999999752222235899999 984  44544 366654331    1110       00            


Q ss_pred             -----CCccccchhhhhhhHHHHHHHhccce
Q psy3214         201 -----DGCSASYTEMQQWTNNIIEAINQGYA  226 (336)
Q Consensus       201 -----~~~~~s~t~l~~w~~~i~~~i~~g~~  226 (336)
                           ....++++.+.+.+..+++++.+...
T Consensus       304 ~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~  334 (431)
T PLN03146        304 GVEEGNIIIDSGTTLTLLPSDFYSELESAVE  334 (431)
T ss_pred             cCCCCcEEEeCCccceecCHHHHHHHHHHHH
Confidence                 01234677788888887777666543

>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases

Probab=99.79  E-value=8.2e-19  Score=139.46  Aligned_cols=101  Identities=35%  Similarity=0.595  Sum_probs=87.8

Q ss_pred             EeccCCccceecccccCcCCCCCCCcEEEcccc------cccee-eeecccCccCCCcEEEEEeCCceEEEEEeEEEEEE
Q psy3214          23 KVSIASSSMCLSGFAGMDIPPPAGPIWILGDVF------IGKFY-TVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRI   95 (336)
Q Consensus        23 ~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~------~~~~y-~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D~v~i   95 (336)
                      ++.+|+|+|-    +.+.+||||+++||.+..|      .++.| +|++|++++..++.+.+.|++|++.|.++.|+|+|
T Consensus         2 ~i~vGtP~q~----~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~i   77 (109)
T cd05470           2 EIGIGTPPQT----FNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSI   77 (109)
T ss_pred             EEEeCCCCce----EEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEE
Confidence            5678999885    4788999999999997622      23455 99999999999999999999999999999999999


Q ss_pred             CCeEEeceEEEEEEeeCCcccccccccccccC
Q psy3214          96 GDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM  127 (336)
Q Consensus        96 g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGL  127 (336)
                      ++..++++.||++....+..+.....+|||||
T Consensus        78 g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL  109 (109)
T cd05470          78 GDIEVVGQAFGCATDEPGATFLPALFDGILGL  109 (109)
T ss_pred             CCEEECCEEEEEEEecCCccccccccccccCC
Confidence            99999999999999987654555678999998

This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site

>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A

Probab=99.67  E-value=4.8e-16  Score=132.93  Aligned_cols=136  Identities=22%  Similarity=0.405  Sum_probs=103.3

Q ss_pred             ceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeeeecccCccCC----------------------CcEEEE
Q psy3214          20 YVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKN----------------------GTQFAI   77 (336)
Q Consensus        20 y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~~~Sst~~~~----------------------~~~~~i   77 (336)
                      |.+++.+|+|.+-    ..+.+||||+.+|+++   ....|+|.+|+||+..                      .+.+.+
T Consensus         1 Y~~~~~iGtP~~~----~~lvvDtgs~l~W~~C---~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~   73 (164)
T PF14543_consen    1 YYVSVSIGTPPQP----FSLVVDTGSDLTWVQC---PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQ   73 (164)
T ss_dssp             EEEEEECTCTTEE----EEEEEETT-SSEEEET-------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEE
T ss_pred             CEEEEEeCCCCce----EEEEEECCCCceEEcC---CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccccee
Confidence            7899999999874    4788899999999975   6678999999999852                      158999


Q ss_pred             EeCCce-EEEEEeEEEEEECC-----eEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccC
Q psy3214          78 RYGSGA-VSGYLSQDTLRIGD-----LTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLE  151 (336)
Q Consensus        78 ~Yg~Gs-~~G~~~~D~v~ig~-----~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~  151 (336)
                      .|++|+ ..|.+++|+|+++.     ..+.+..||++....+. +.  ..+||||||...+      +++.+|.++   .
T Consensus        74 ~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~-~~--~~~GilGLg~~~~------Sl~sQl~~~---~  141 (164)
T PF14543_consen   74 SYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL-FY--GADGILGLGRGPL------SLPSQLASS---S  141 (164)
T ss_dssp             EETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS-ST--TEEEEEE-SSSTT------SHHHHHHHH----
T ss_pred             ecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC-Cc--CCCcccccCCCcc------cHHHHHHHh---c
Confidence            999888 89999999999986     56888999999988753 22  7799999996654      677888777   6


Q ss_pred             CCeEEEEeecCCCCCCCCceEEecCC
Q psy3214         152 KNVFGFYLNRYNTEKLANGEVPIPSA  177 (336)
Q Consensus       152 ~~~Fs~~l~~~~~~~~~~G~l~f~GG  177 (336)
                      .+.||++|.+ . +....|.|+| |+
T Consensus       142 ~~~FSyCL~~-~-~~~~~g~l~f-G~  164 (164)
T PF14543_consen  142 GNKFSYCLPS-S-SPSSSGFLSF-GD  164 (164)
T ss_dssp             -SEEEEEB-S---SSSSEEEEEE-CS
T ss_pred             CCeEEEECCC-C-CCCCCEEEEe-Cc
Confidence            7999999988 2 3457899999 85

>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall

Probab=99.64  E-value=1e-15  Score=146.85  Aligned_cols=145  Identities=15%  Similarity=0.097  Sum_probs=101.3

Q ss_pred             ccCcCCCCCCCcEEEcc----------------ccccceeeeec------ccCccCCCcEEEEE-eCCce-EEEEEeEEE
Q psy3214          37 AGMDIPPPAGPIWILGD----------------VFIGKFYTVFD------MDNNQKNGTQFAIR-YGSGA-VSGYLSQDT   92 (336)
Q Consensus        37 ~~~~~dtGS~~~Wv~~~----------------c~~~~~y~~~~------Sst~~~~~~~~~i~-Yg~Gs-~~G~~~~D~   92 (336)
                      +.+.+||||+.+||.+.                |..+..|++.+      ++......+.+... |++|+ .+|.+++|+
T Consensus        10 ~~~~~DTGS~l~WvqC~~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t~G~l~~Dt   89 (362)
T cd05489          10 VPLVLDLAGPLLWSTCDAGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECATGDLTQDV   89 (362)
T ss_pred             eeEEEECCCCceeeeCCCCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEeeEEEEEEE
Confidence            57889999999999543                22233343321      11222223556554 78895 899999999


Q ss_pred             EEECC--------eEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCC
Q psy3214          93 LRIGD--------LTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNT  164 (336)
Q Consensus        93 v~ig~--------~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~  164 (336)
                      |+++.        .+++++.||++.......+ ...+|||||||+..++.      ..+|..+.. .+++||+||.+ +.
T Consensus        90 l~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lSl------~sql~~~~~-~~~~FS~CL~~-~~  160 (362)
T cd05489          90 LSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLSL------PAQLASAFG-VARKFALCLPS-SP  160 (362)
T ss_pred             EEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccch------HHHhhhhcC-CCcceEEEeCC-CC
Confidence            99973        3799999999987532122 23489999999988753      335555444 57999999998 42


Q ss_pred             CCCCCceEEecCCCCCcccc------cccceeEec
Q psy3214         165 EKLANGEVPIPSAHDPKELE------SRIENKYQL  193 (336)
Q Consensus       165 ~~~~~G~l~f~GGiD~~~~~------G~l~~~~~~  193 (336)
                        ..+|+|+| ||.|++++.      |++.|++..
T Consensus       161 --~~~g~l~f-G~~~~~~~~~~~~~~~~~~~tPl~  192 (362)
T cd05489         161 --GGPGVAIF-GGGPYYLFPPPIDLSKSLSYTPLL  192 (362)
T ss_pred             --CCCeeEEE-CCCchhcccccccccCCccccccc
Confidence              35899999 999998885      778887544

Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability

>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family

Probab=97.87  E-value=2e-05  Score=60.19  Aligned_cols=92  Identities=20%  Similarity=0.264  Sum_probs=63.5

Q ss_pred             CceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeeeecccCccCCCcEEEEEeCCce-EEEEEeEEEEEECC
Q psy3214          19 DYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGA-VSGYLSQDTLRIGD   97 (336)
Q Consensus        19 ~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs-~~G~~~~D~v~ig~   97 (336)
                      .|.+++.+++.+      ..+.+||||+.+||...+...-..       -........+..++|. .......+.+++|+
T Consensus         2 ~~~v~v~i~~~~------~~~llDTGa~~s~i~~~~~~~l~~-------~~~~~~~~~~~~~~G~~~~~~~~~~~i~ig~   68 (96)
T cd05483           2 HFVVPVTINGQP------VRFLLDTGASTTVISEELAERLGL-------PLTLGGKVTVQTANGRVRAARVRLDSLQIGG   68 (96)
T ss_pred             cEEEEEEECCEE------EEEEEECCCCcEEcCHHHHHHcCC-------CccCCCcEEEEecCCCccceEEEcceEEECC
Confidence            356777776432      256789999999998653211111       1223456678888888 55566689999999


Q ss_pred             eEEeceEEEEEEeeCCcccccccccccccCcc
Q psy3214          98 LTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY  129 (336)
Q Consensus        98 ~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~  129 (336)
                      .+++++.+.++.....      ..|||||+.+
T Consensus        69 ~~~~~~~~~v~d~~~~------~~~gIlG~d~   94 (96)
T cd05483          69 ITLRNVPAVVLPGDAL------GVDGLLGMDF   94 (96)
T ss_pred             cEEeccEEEEeCCccc------CCceEeChHH
Confidence            9999999988765431      5799999864

This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.

>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins

Probab=97.40  E-value=0.0002  Score=67.55  Aligned_cols=61  Identities=56%  Similarity=1.214  Sum_probs=50.6

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|+++|+.|+|++.+|+++...+.+..|+.+++.+.+.....+.||+|+.+.+++|.
T Consensus       244 ~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~  304 (317)
T cd06098         244 MPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHT  304 (317)
T ss_pred             CCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEE
Confidence            6999999999999999999999877666678998887665544445789999999888763

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro

>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases

Probab=97.38  E-value=0.00022  Score=67.42  Aligned_cols=61  Identities=62%  Similarity=1.280  Sum_probs=50.0

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.|+|++.+|+++........|+.+++.+++.......||+|+.+.++.|.
T Consensus       252 ~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~  312 (325)
T cd05490         252 LPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYT  312 (325)
T ss_pred             CCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEE
Confidence            6999999999999999999999876544567998887766544456789999999888764

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank

>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease

Probab=97.25  E-value=0.00037  Score=65.64  Aligned_cols=61  Identities=49%  Similarity=1.092  Sum_probs=49.4

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.|+|++.+|++......+..|+.+++.+.+.....+.||+|+.+.++.|.
T Consensus       243 ~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~  303 (316)
T cd05486         243 MPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYS  303 (316)
T ss_pred             CCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEE
Confidence            6999999999999999999999754334567998887766544455789999999888764

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt

>PTZ00165 aspartyl protease; Provisional

Probab=97.14  E-value=0.00048  Score=68.72  Aligned_cols=61  Identities=34%  Similarity=0.866  Sum_probs=49.6

Q ss_pred             CCcEEEEECCE-----EeeeCccCceeEec--cCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGK-----NFTLTPTDYVLKVS--IASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~-----~~~i~~~~y~~~~~--~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|+++|+     .|+|++.+|+++..  ...+..|+++++.+++....++.||+|+.|.+++|.
T Consensus       365 lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~  432 (482)
T PTZ00165        365 LPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYS  432 (482)
T ss_pred             CCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEE
Confidence            69999999986     99999999999853  223468999998877654456899999999998874

>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure

Probab=97.07  E-value=0.00066  Score=64.26  Aligned_cols=61  Identities=52%  Similarity=1.088  Sum_probs=50.0

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.++|++.+|+++.....+..|.+++....+..+.++.||+|+.+.++.|.
T Consensus       252 ~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~  312 (326)
T cd05487         252 LPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYT  312 (326)
T ss_pred             CCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEE
Confidence            5999999999999999999999876555678998888765433345689999999888764

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r

>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases

Probab=96.98  E-value=0.00098  Score=63.22  Aligned_cols=60  Identities=65%  Similarity=1.363  Sum_probs=48.6

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      +|+|+|.++|++|+|++++|+++..-.+...|+.+++...+.......||+|+.+.++.|
T Consensus       256 ~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y  315 (329)
T cd05485         256 LPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYY  315 (329)
T ss_pred             CCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccce
Confidence            589999999999999999999987654457899888765543344568999999988866

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an

>PTZ00147 plasmepsin-1; Provisional

Probab=96.18  E-value=0.005  Score=61.00  Aligned_cols=58  Identities=28%  Similarity=0.602  Sum_probs=46.4

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.|+|+|.+|+.+..-..+..|+.+++....   .+..||+|+.+.++.|.
T Consensus       378 lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~---~~~~~ILGd~FLr~~Yt  435 (453)
T PTZ00147        378 LPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDL---EKNTFILGDPFMRKYFT  435 (453)
T ss_pred             CCeEEEEECCEEEEECHHHheeccccCCCcEEEEEEEECCC---CCCCEEECHHHhccEEE
Confidence            69999999999999999999986544445679888776443   23579999999988773

>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily

Probab=96.11  E-value=0.006  Score=57.57  Aligned_cols=56  Identities=50%  Similarity=1.038  Sum_probs=44.4

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      +|.|+|.++|+.|.|++++|+++.    ...|+..+....+....++.||+|+.+.++.|
T Consensus       251 ~P~i~f~f~g~~~~i~~~~y~~~~----~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y  306 (320)
T cd05488         251 LPDLTFNFDGYNFTLGPFDYTLEV----SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYY  306 (320)
T ss_pred             CCCEEEEECCEEEEECHHHheecC----CCeEEEEEEECcCCCCCCCeEEEchHHhhheE
Confidence            599999999999999999999853    24698877665543334568999999988766

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro

>PTZ00013 plasmepsin 4 (PM4); Provisional

Probab=95.80  E-value=0.0092  Score=59.08  Aligned_cols=58  Identities=28%  Similarity=0.593  Sum_probs=45.4

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.|+|+|.+|+.......+..|+.++.....+   ...||+|+.+.++.|.
T Consensus       377 lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~---~~~~ILGd~FLr~~Y~  434 (450)
T PTZ00013        377 MPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITMLPVDID---DNTFILGDPFMRKYFT  434 (450)
T ss_pred             CCeEEEEECCEEEEECHHHheehhccCCCCeeEEEEEECCCC---CCCEEECHHHhccEEE
Confidence            699999999999999999999754322345799888665432   3589999999888774

>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077

Probab=95.68  E-value=0.0084  Score=55.90  Aligned_cols=62  Identities=34%  Similarity=0.810  Sum_probs=52.9

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeeee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVF   63 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~~   63 (336)
                      +|.|+|.+++..|+|++.+|+.+...+....|.+++..+.. .+..+.||+|..++++.|---
T Consensus       244 ~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~iLG~~fl~~~y~vf  305 (317)
T PF00026_consen  244 LPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDWILGSPFLRNYYVVF  305 (317)
T ss_dssp             SEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEEEEEHHHHTTEEEEE
T ss_pred             cceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCceEecHHHhhceEEEE
Confidence            58999999999999999999999887766689999887555 567789999999999887443

; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....

>PF13650 Asp_protease_2: Aspartyl protease

Probab=95.53  E-value=0.068  Score=39.83  Aligned_cols=78  Identities=22%  Similarity=0.184  Sum_probs=45.9

Q ss_pred             cCcCCCCCCCcEEEccccccceeeeecccCccCCCcEEEEEeCCce-EEEEEeEEEEEECCeEEeceEEEEEEeeCCccc
Q psy3214          38 GMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTF  116 (336)
Q Consensus        38 ~~~~dtGS~~~Wv~~~c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~  116 (336)
                      .+.+|||++.+.|..+...+-...+      ........+.-.+|. .......+.+++|+.++.+..|-++.       
T Consensus        11 ~~liDTGa~~~~i~~~~~~~l~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~i~ig~~~~~~~~~~v~~-------   77 (90)
T PF13650_consen   11 RFLIDTGASISVISRSLAKKLGLKP------RPKSVPISVSGAGGSVTVYRGRVDSITIGGITLKNVPFLVVD-------   77 (90)
T ss_pred             EEEEcCCCCcEEECHHHHHHcCCCC------cCCceeEEEEeCCCCEEEEEEEEEEEEECCEEEEeEEEEEEC-------
Confidence            4568999998776544321111111      111112333334444 34556667899999999888877665       


Q ss_pred             ccccccccccCc
Q psy3214         117 VAAKFDGILGMG  128 (336)
Q Consensus       117 ~~~~~dGIlGLg  128 (336)
                      .....+||||+-
T Consensus        78 ~~~~~~~iLG~d   89 (90)
T PF13650_consen   78 LGDPIDGILGMD   89 (90)
T ss_pred             CCCCCEEEeCCc
Confidence            134568999974

>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals

Probab=95.19  E-value=0.019  Score=54.09  Aligned_cols=53  Identities=43%  Similarity=0.978  Sum_probs=43.0

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.++|++++|+.+.    ...|+.++....    ..+.||+|+.+.++.|.
T Consensus       252 ~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~----~~~~~IlG~~fl~~~y~  304 (317)
T cd05478         252 MPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG----LGELWILGDVFIRQYYS  304 (317)
T ss_pred             CCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC----CCCeEEechHHhcceEE
Confidence            699999999999999999999864    467987776532    24679999998888663

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which

>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa

Probab=94.56  E-value=0.04  Score=51.82  Aligned_cols=57  Identities=33%  Similarity=0.880  Sum_probs=44.2

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCC-CCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPP-PAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dt-GS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.+.|++.+|+.+.    ...|..++.....++ +..+.||+|+.+.++.|.
T Consensus       247 ~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~  304 (318)
T cd05477         247 LPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYS  304 (318)
T ss_pred             CCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCceEEEcHHHhhheEE
Confidence            589999999999999999999863    357988876544332 223679999998887653

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten

>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family

Probab=93.74  E-value=0.15  Score=41.14  Aligned_cols=93  Identities=11%  Similarity=0.124  Sum_probs=56.4

Q ss_pred             cCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeeeecccCccCCCcEEEEEeCCceEE-EEEeEEEEEEC
Q psy3214          18 TDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVS-GYLSQDTLRIG   96 (336)
Q Consensus        18 ~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~-G~~~~D~v~ig   96 (336)
                      -.|.++..+.+.  +    ..+.+|||++.+-+..+...+-...+.      .......+.=+.|.+. ..+.-|.+.+|
T Consensus        10 g~~~v~~~InG~--~----~~flVDTGAs~t~is~~~A~~Lgl~~~------~~~~~~~~~ta~G~~~~~~~~l~~l~iG   77 (121)
T TIGR02281        10 GHFYATGRVNGR--N----VRFLVDTGATSVALNEEDAQRLGLDLN------RLGYTVTVSTANGQIKAARVTLDRVAIG   77 (121)
T ss_pred             CeEEEEEEECCE--E----EEEEEECCCCcEEcCHHHHHHcCCCcc------cCCceEEEEeCCCcEEEEEEEeCEEEEC
Confidence            356777777543  2    256789999988665443211112111      1123344444566643 44688999999


Q ss_pred             CeEEeceEEEEEEeeCCcccccccccccccCcc
Q psy3214          97 DLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY  129 (336)
Q Consensus        97 ~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~  129 (336)
                      +..++|....++....       ..+|+||+.+
T Consensus        78 ~~~~~nv~~~v~~~~~-------~~~~LLGm~f  103 (121)
T TIGR02281        78 GIVVNDVDAMVAEGGA-------LSESLLGMSF  103 (121)
T ss_pred             CEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence            9999999977653221       1279999975

This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).

>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall

Probab=93.63  E-value=0.11  Score=49.91  Aligned_cols=55  Identities=22%  Similarity=0.438  Sum_probs=41.5

Q ss_pred             CCcEEEEECC--EEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIILGG--KNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~~~--~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      +|+|+|.++|  ..+.|++++|++++.-  ...|+ ++.....+  ...+||.|+-+.+++|
T Consensus       290 ~P~it~~f~g~g~~~~l~~~ny~~~~~~--~~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~  346 (362)
T cd05489         290 VPAIDLVLDGGGVNWTIFGANSMVQVKG--GVACL-AFVDGGSE--PRPAVVIGGHQMEDNL  346 (362)
T ss_pred             cceEEEEEeCCCeEEEEcCCceEEEcCC--CcEEE-EEeeCCCC--CCceEEEeeheecceE
Confidence            5999999986  9999999999998753  34694 66544332  2468999998877654

Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability

>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

Probab=93.53  E-value=0.068  Score=49.46  Aligned_cols=54  Identities=26%  Similarity=0.471  Sum_probs=43.0

Q ss_pred             CcEEEEECCEEeeeCccCceeEecc--CCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           2 PNVDIILGGKNFTLTPTDYVLKVSI--ASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         2 p~i~~~~~~~~~~i~~~~y~~~~~~--g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      |+|+|.++|..++|++.+|+++...  +....|..++....    . ..||+|+.+.++.|
T Consensus       225 p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~----~-~~~iLG~~fl~~~y  280 (295)
T cd05474         225 GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYLGIQPST----S-DYNILGDTFLRSAY  280 (295)
T ss_pred             CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEEEEEeCC----C-CcEEeChHHhhcEE
Confidence            7999999999999999999997653  23567987776432    1 68999999988765

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases

>KOG1339|consensus

Probab=92.65  E-value=0.22  Score=48.50  Aligned_cols=55  Identities=42%  Similarity=0.920  Sum_probs=42.7

Q ss_pred             CCcEEEEEC-CEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIILG-GKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~~-~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      +|+|.|.++ |+.|.+.+.+|++++..+... |...+..+..+    ..||+|+-+.++.+
T Consensus       321 ~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~  376 (398)
T KOG1339|consen  321 LPDITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYL  376 (398)
T ss_pred             CCcEEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEE
Confidence            699999999 899999999999998765322 87666544322    78999997766554

>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation

Probab=91.93  E-value=0.34  Score=44.54  Aligned_cols=56  Identities=20%  Similarity=0.471  Sum_probs=41.5

Q ss_pred             CCcEEEEECC----EEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIILGG----KNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~~~----~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      +|+|+|.+++    +.+.|++.+|+++...  ...|+..+....+  +..+.||+|+.+.++.|
T Consensus       197 ~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~Cl~~~~~~~~--~~~~~~ilG~~~l~~~~  256 (273)
T cd05475         197 FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVCLGILNGSEI--GLGNTNIIGDISMQGLM  256 (273)
T ss_pred             cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEEEEEecCCCc--CCCceEEECceEEEeeE
Confidence            5899999987    7999999999987543  3469755543222  23468999999877765

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d

>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein

Probab=91.42  E-value=0.34  Score=39.13  Aligned_cols=91  Identities=15%  Similarity=0.151  Sum_probs=53.6

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeeeecccCccCCCcEEE-EEeCCce--EEEEEeEEEE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFA-IRYGSGA--VSGYLSQDTL   93 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~~~Sst~~~~~~~~~-i~Yg~Gs--~~G~~~~D~v   93 (336)
                      ...+.++..+++.+.      ...+|||++-++|..+|..+-......       ...+. ...|.|.  ..|....+.+
T Consensus        14 ~~~~~v~~~Ing~~~------~~LvDTGAs~s~Is~~~a~~lgl~~~~-------~~~~~~~~~g~g~~~~~g~~~~~~l   80 (124)
T cd05479          14 VPMLYINVEINGVPV------KAFVDSGAQMTIMSKACAEKCGLMRLI-------DKRFQGIAKGVGTQKILGRIHLAQV   80 (124)
T ss_pred             eeEEEEEEEECCEEE------EEEEeCCCceEEeCHHHHHHcCCcccc-------CcceEEEEecCCCcEEEeEEEEEEE
Confidence            344556666654322      457899999998876654321111111       11121 2233332  6787888899


Q ss_pred             EECCeEEeceEEEEEEeeCCcccccccccccccCcc
Q psy3214          94 RIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY  129 (336)
Q Consensus        94 ~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~  129 (336)
                      .+++...+ ..|.+...        ...|+|||+-|
T Consensus        81 ~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d~  107 (124)
T cd05479          81 KIGNLFLP-CSFTVLED--------DDVDFLIGLDM  107 (124)
T ss_pred             EECCEEee-eEEEEECC--------CCcCEEecHHH
Confidence            99998875 66655421        25689999975

The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase

Probab=91.18  E-value=0.35  Score=44.93  Aligned_cols=55  Identities=31%  Similarity=0.546  Sum_probs=39.9

Q ss_pred             CCcEEEEEC-CEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIILG-GKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~~-~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      +|+|+|+++ +..+.|++.+|+..... ....|+ ++...  + +....||+|+.+.++.|
T Consensus       227 ~P~i~f~f~~g~~~~l~~~~y~~~~~~-~~~~C~-~~~~~--~-~~~~~~ilG~~fl~~~~  282 (299)
T cd05472         227 VPTVSLHFQGGADVELDASGVLYPVDD-SSQVCL-AFAGT--S-DDGGLSIIGNVQQQTFR  282 (299)
T ss_pred             cCCEEEEECCCCEEEeCcccEEEEecC-CCCEEE-EEeCC--C-CCCCCEEEchHHccceE
Confidence            599999997 99999999999984332 335686 33321  1 23467999999887765

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami

>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

Probab=89.87  E-value=0.48  Score=43.24  Aligned_cols=52  Identities=25%  Similarity=0.633  Sum_probs=40.3

Q ss_pred             CcEEEEEC-CEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           2 PNVDIILG-GKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         2 p~i~~~~~-~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      |+|+|.++ ++.|.+++.+|+++..  ....|. ++..    ++..+.||+|+.+.++.|
T Consensus       196 P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~-~~~~----~~~~~~~ilG~~fl~~~~  248 (265)
T cd05476         196 PDLTLHFDGGADLELPPENYFVDVG--EGVVCL-AILS----SSSGGVSILGNIQQQNFL  248 (265)
T ss_pred             CCEEEEECCCCEEEeCcccEEEECC--CCCEEE-EEec----CCCCCcEEEChhhcccEE
Confidence            89999998 9999999999998543  446796 3332    224578999999988765

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which

>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised

Probab=86.48  E-value=1.2  Score=42.56  Aligned_cols=94  Identities=19%  Similarity=0.201  Sum_probs=55.9

Q ss_pred             cceecccccCcCCCCCCCcEEEccccccc---eeeeecccCccCCCcEEE--EEeCCceEEEEEeEEEEEECCeEEeceE
Q psy3214          30 SMCLSGFAGMDIPPPAGPIWILGDVFIGK---FYTVFDMDNNQKNGTQFA--IRYGSGAVSGYLSQDTLRIGDLTIKNQV  104 (336)
Q Consensus        30 ~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~---~y~~~~Sst~~~~~~~~~--i~Yg~Gs~~G~~~~D~v~ig~~~v~~~~  104 (336)
                      .+|+.-. .+.+||||.-+=|........   ......+     .+.+..  ..|++|..-|.+.+.+|+||+.+..+..
T Consensus        36 s~CqTId-nvlVDTGS~GLRi~~sAl~~~l~~~Lp~~t~-----~g~~laEC~~F~sgytWGsVr~AdV~igge~A~~iP  109 (370)
T PF11925_consen   36 SNCQTID-NVLVDTGSYGLRIFASALPSSLAGSLPQQTG-----GGAPLAECAQFASGYTWGSVRTADVTIGGETASSIP  109 (370)
T ss_pred             CCceeeC-cEEEeccchhhhHHHhhhchhhhccCCcccC-----CCcchhhhhhccCcccccceEEEEEEEcCeeccccC
Confidence            4676544 477899998776654422111   1222111     333333  7889999999999999999997544433


Q ss_pred             EEEEEee-----CC---------cccccccccccccCcc
Q psy3214         105 FGEAIKE-----PG---------FTFVAAKFDGILGMGY  129 (336)
Q Consensus       105 fg~~~~~-----~~---------~~~~~~~~dGIlGLg~  129 (336)
                      +-++...     +.         .........||||+|.
T Consensus       110 iQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~  148 (370)
T PF11925_consen  110 IQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGP  148 (370)
T ss_pred             EEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecC
Confidence            3333221     10         0112345789999985

This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.

>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite

Probab=85.19  E-value=0.73  Score=43.51  Aligned_cols=50  Identities=24%  Similarity=0.376  Sum_probs=38.0

Q ss_pred             CcEEEEEC-CEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           2 PNVDIILG-GKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         2 p~i~~~~~-~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      |+|+|.++ |+.+.|++.+|+++...   ..|..++.      +++..||+|+.+.++.|
T Consensus       258 P~i~~~f~~g~~~~i~p~~y~~~~~~---~~c~~~~~------~~~~~~ILG~~flr~~y  308 (326)
T cd06096         258 PTITIIFENNLKIDWKPSSYLYKKES---FWCKGGEK------SVSNKPILGASFFKNKQ  308 (326)
T ss_pred             CcEEEEEcCCcEEEECHHHhccccCC---ceEEEEEe------cCCCceEEChHHhcCcE
Confidence            89999998 89999999999987542   22544432      23468999999888765

The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l

>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases

Probab=83.90  E-value=4.6  Score=30.30  Aligned_cols=63  Identities=14%  Similarity=0.045  Sum_probs=37.3

Q ss_pred             cCcCCCCCCCcEEEccccccceeeeecccCccCCCcEEEEEeCCce---EEEEEeEEEEEECCeEEeceEEEEEE
Q psy3214          38 GMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGA---VSGYLSQDTLRIGDLTIKNQVFGEAI  109 (336)
Q Consensus        38 ~~~~dtGS~~~Wv~~~c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs---~~G~~~~D~v~ig~~~v~~~~fg~~~  109 (336)
                      .+.+||||+.++|..+.+.+....+     ..+  ....+.=.+|.   +.|.+ .+.+++++.+.. ..|-++.
T Consensus        13 ~~lvDTGA~~svis~~~~~~lg~~~-----~~~--~~~~v~~a~G~~~~~~G~~-~~~v~~~~~~~~-~~~~v~~   78 (91)
T cd05484          13 KFQLDTGSAITVISEKTWRKLGSPP-----LKP--TKKRLRTATGTKLSVLGQI-LVTVKYGGKTKV-LTLYVVK   78 (91)
T ss_pred             EEEEcCCcceEEeCHHHHHHhCCCc-----ccc--ccEEEEecCCCEeeEeEEE-EEEEEECCEEEE-EEEEEEE
Confidence            5678999999998765443322222     112  22333334444   56776 899999998744 5555444

Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif

>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements

Probab=82.88  E-value=7.5  Score=28.93  Aligned_cols=72  Identities=18%  Similarity=0.092  Sum_probs=39.8

Q ss_pred             cCcCCCCCCCcEEEccccccceeeeecccCccCCCcEEEEEeCCceEEEEE-eEE-EEEECCeEEeceEEEEEEeeCCcc
Q psy3214          38 GMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYL-SQD-TLRIGDLTIKNQVFGEAIKEPGFT  115 (336)
Q Consensus        38 ~~~~dtGS~~~Wv~~~c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~-~~D-~v~ig~~~v~~~~fg~~~~~~~~~  115 (336)
                      .+.+|||++.+=+......+.          ........+.=..|...-.+ ..+ .+.+|+..+.+ .|......    
T Consensus        11 ~fLvDTGA~~tii~~~~a~~~----------~~~~~~~~v~gagG~~~~~v~~~~~~v~vg~~~~~~-~~~v~~~~----   75 (86)
T cd06095          11 VFLVDTGATHSVLKSDLGPKQ----------ELSTTSVLIRGVSGQSQQPVTTYRTLVDLGGHTVSH-SFLVVPNC----   75 (86)
T ss_pred             EEEEECCCCeEEECHHHhhhc----------cCCCCcEEEEeCCCcccccEEEeeeEEEECCEEEEE-EEEEEcCC----
Confidence            346799999887764432211          11234444443344431111 123 69999999985 45443221    


Q ss_pred             cccccccccccCcc
Q psy3214         116 FVAAKFDGILGMGY  129 (336)
Q Consensus       116 ~~~~~~dGIlGLg~  129 (336)
                           .++|||+.|
T Consensus        76 -----~~~lLG~df   84 (86)
T cd06095          76 -----PDPLLGRDL   84 (86)
T ss_pred             -----CCcEechhh
Confidence                 279999865

This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	336
1g0v_A	329	The Structure Of Proteinase A Complexed With A Ia3		9e-30
2jxr_A	329	Structure Of Yeast Proteinase A Length = 329		1e-29
1dp5_A	329	The Structure Of Proteinase A Complexed With A Ia3		1e-29
1lya_B	241	Crystal Structures Of Native And Inhibited Forms Of		6e-24
1lya_B	241	Crystal Structures Of Native And Inhibited Forms Of		7e-18
1qdm_A	478	Crystal Structure Of Prophytepsin, A Zymogen Of A B		7e-24
2x0b_A	383	Crystal Structure Of Human Angiotensinogen Complexe		4e-21
3d91_A	341	Human Renin In Complex With Remikiren Length = 341		4e-21
2bks_A	340	Crystal Structure Of Renin-Pf00074777 Complex Lengt		4e-21
2i4q_A	336	Human ReninPF02342674 COMPLEX Length = 336		4e-21
1hrn_A	337	High Resolution Crystal Structures Of Recombinant H		4e-21
2g24_A	333	Ketopiperazine-Based Renin Inhibitors: Optimization		4e-21
3vcm_A	335	Crystal Structure Of Human Prorenin Length = 335		3e-20
3oad_A	166	Design And Optimization Of New Piperidines As Renin		4e-20
1smr_A	335	The 3-D Structure Of Mouse Submaxillary Renin Compl		6e-19
1tzs_A	351	Crystal Structure Of An Activation Intermediate Of		1e-18
1b5f_A	239	Native Cardosin A From Cynara Cardunculus L. Length		2e-16
3oad_B	176	Design And Optimization Of New Piperidines As Renin		1e-15
1am5_A	324	The Crystal Structure And Proposed Amino Acid Seque		5e-15
1pso_E	326	The Crystal Structure Of Human Pepsin And Its Compl		2e-14
1flh_A	326	Crystal Structure Of Human Uropepsin At 2.45 A Reso		2e-14
1htr_B	329	Crystal And Molecular Structures Of Human Progastri		2e-14
5pep_A	326	X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dim		4e-14
3psg_A	370	The High Resolution Crystal Structure Of Porcine Pe		4e-14
3pep_A	326	Revised 2.3 Angstroms Structure Of Porcine Pepsin.		4e-14
1psa_A	326	Structure Of A Pepsin(Slash)renin Inhibitor Complex		4e-14
1f34_A	326	Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bou		4e-14
4pep_A	326	The Molecular And Crystal Structures Of Monoclinic		4e-14
2psg_A	370	Refined Structure Of Porcine Pepsinogen At 1.8 Angs		4e-14
1b5f_B	87	Native Cardosin A From Cynara Cardunculus L. Length		5e-14
1czi_E	323	Chymosin Complex With The Inhibitor Cp-113972 Lengt		1e-12
4aa9_A	320	Camel Chymosin At 1.6a Resolution Length = 320		2e-12
3cms_A	323	Engineering Enzyme Sub-Site Specificity: Preparatio		2e-12
2bju_A	453	Plasmepsin Ii Complexed With A Highly Active Achira		5e-12
1sme_A	329	Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From P		5e-12
1pfz_A	380	Proplasmepsin Ii From Plasmodium Falciparum Length		6e-12
3f9q_A	329	Re-Refinement Of Uncomplexed Plasmepsin Ii From Pla		6e-12
1m43_A	331	Crystal Structure Of Pmii In Complex With Pepstatin		6e-12
1lf3_A	331	Crystal Structure Of Plasmepsin Ii From P Falciparu		6e-12
1uh7_A	325	Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt		1e-11
3apr_E	325	Binding Of A Reduced Peptide Inhibitor To The Aspar		1e-11
1ls5_A	328	Crystal Structure Of Plasmepsin Iv From P. Falcipar		2e-10
2anl_A	327	X-Ray Crystal Structure Of The Aspartic Protease Pl		5e-10
3qrv_A	336	Crystal Structure Of Plasmepsin I (Pmi) From Plasmo		1e-09
1qs8_B	329	Crystal Structure Of The P. Vivax Aspartic Proteina		2e-09
3ixv_A	626	Scorpion Hemocyanin Resting State Pseudo Atomic Mod		3e-09
1miq_A	375	Crystal Structure Of Proplasmepsin From The Human M		9e-09
3hhs_B	684	Crystal Structure Of Manduca Sexta Prophenoloxidase		1e-08
3hhs_A	694	Crystal Structure Of Manduca Sexta Prophenoloxidase		2e-08
1oxy_A	628	Crystallographic Analysis Of Oxygenated And Deoxyge		4e-08
1ll1_A	628	Hydroxo Bridge Met Form Hemocyanin From Limulus Len		4e-08
1lla_A	628	Crystal Structure Of Deoxygenated Limulus Polyphemu		4e-08
1wkr_A	340	Crystal Structure Of Aspartic Proteinase From Irpex		1e-06
3fns_A	332	Crystal Structure Of Histo-Aspartic Protease (Hap)		5e-05
3qvc_A	451	Crystal Structure Of Histo-Aspartic Protease (Hap)		1e-04
1lyw_A	97	Cathepsin D At Ph 7.5 Length = 97		2e-04
1hc1_A	657	Crystal Structure Of Hexameric Haemocyanin From Pan		2e-04
2qzw_A	341	Secreted Aspartic Proteinase (Sap) 1 From Candida A		3e-04

>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329

Iteration: 1
 Score =  127 bits (319), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 103/186 (55%), Gaps = 8/186 (4%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           + NGT+FAI+YG+G++ GY+SQDTL IGDLTI  Q F EA  EPG TF   KFDGILG+G
Sbjct: 66  KANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLG 125
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK---ELES 185
           YD I+VD V PPFYN IQQ LL++  F FYL   + +    GE       + K   ++  
Sbjct: 126 YDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITW 185
Query: 186 RIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYA-VTLEYPGVELKSLRILNK 244
               +    E    G G    Y E++        AI+ G + +TL     E+ +  I  K
Sbjct: 186 LPVRRKAYWEVKFEGIGLGDEYAELESHG----AAIDTGTSLITLPSGLAEMINAEIGAK 241
Query: 245 QGPTDQ 250
           +G T Q
Sbjct: 242 KGSTGQ 247

>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329

Iteration: 1
 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 74/104 (71%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           + NGT+FAI+YG+G++ GY+SQDTL IGDLTI  Q F EA  EPG TF   KFDGILG+G
Sbjct: 66  KANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLG 125
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
           YD I+VD V PPFYN IQQ LL++  F FYL   + +    GE 
Sbjct: 126 YDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEA 169

>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329

Iteration: 1
 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 74/104 (71%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           + NGT+FAI+YG+G++ GY+SQDTL IGDLTI  Q F EA  EPG TF   KFDGILG+G
Sbjct: 66  KANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLG 125
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
           YD I+VD V PPFYN IQQ LL++  F FYL   + +    GE 
Sbjct: 126 YDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEA 169

>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human Cathepsin D: Implications For Lysosomal Targeting And Drug Design Length = 241

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P + + LGGK + L+P DY LKVS A  ++CLSGF GMDIPPP+GP+WILGDVFIG++Y
Sbjct: 166 LPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYY 225
Query: 61  TVFDMDNNQ 69
           TVFD DNN+
Sbjct: 226 TVFDRDNNR 234

>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human Cathepsin D: Implications For Lysosomal Targeting And Drug Design Length = 241

Iteration: 1
 Score = 87.8 bits (216), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 53/66 (80%)
Query: 96  GDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVF 155
           G + ++ QVFGEA K+PG TF+AAKFDGILGM Y  I+V+ V P F N++QQKL+++N+F
Sbjct: 1   GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIF 60
Query: 156 GFYLNR 161
            FYL+R
Sbjct: 61  SFYLSR 66

>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley Vacuolar Aspartic Proteinase. Length = 478

Iteration: 1
 Score =  107 bits (268), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 48/94 (51%), Positives = 70/94 (74%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           +KNG   AI+YG+G+++GY S+D++ +GDL +K+Q F EA KEPG TF+ AKFDGILG+G
Sbjct: 106 KKNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLG 165
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRY 162
           +  I+V    P +Y +I+Q L+   VF F+LNR+
Sbjct: 166 FKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRH 199

>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With Renin Length = 383

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 58  KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
           K +   D  + + NGT+  +RY +G VSG+LSQD + +G +T+  Q+FGE  + P   F+
Sbjct: 105 KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 163
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSA 177
            A+FDG++GMG+   A+  V P F NII Q +L+++VF FY NR +    + G   +   
Sbjct: 164 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG 223
Query: 178 HDPKELE 184
            DP+  E
Sbjct: 224 SDPQHYE 230

>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren Length = 341

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 58  KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
           K +   D  + + NGT+  +RY +G VSG+LSQD + +G +T+  Q+FGE  + P   F+
Sbjct: 62  KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 120
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSA 177
            A+FDG++GMG+   A+  V P F NII Q +L+++VF FY NR +    + G   +   
Sbjct: 121 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG 180
Query: 178 HDPKELE 184
            DP+  E
Sbjct: 181 SDPQHYE 187

>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex Length = 340

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 58  KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
           K +   D  + + NGT+  +RY +G VSG+LSQD + +G +T+  Q+FGE  + P   F+
Sbjct: 62  KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 120
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSA 177
            A+FDG++GMG+   A+  V P F NII Q +L+++VF FY NR +    + G   +   
Sbjct: 121 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG 180
Query: 178 HDPKELE 184
            DP+  E
Sbjct: 181 SDPQHYE 187

>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX Length = 336

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 58  KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
           K +   D  + + NGT+  +RY +G VSG+LSQD + +G +T+  Q+FGE  + P   F+
Sbjct: 58  KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 116
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSA 177
            A+FDG++GMG+   A+  V P F NII Q +L+++VF FY NR +    + G   +   
Sbjct: 117 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG 176
Query: 178 HDPKELE 184
            DP+  E
Sbjct: 177 SDPQHYE 183

>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human Renin In Complex With Polyhydroxymonoamide Inhibitors Length = 337

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 58  KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
           K +   D  + + NGT+  +RY +G VSG+LSQD + +G +T+  Q+FGE  + P   F+
Sbjct: 59  KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 117
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSA 177
            A+FDG++GMG+   A+  V P F NII Q +L+++VF FY NR +    + G   +   
Sbjct: 118 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG 177
Query: 178 HDPKELE 184
            DP+  E
Sbjct: 178 SDPQHYE 184

>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The "c" Ring Length = 333

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 58  KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
           K +   D  + + NGT+  +RY +G VSG+LSQD + +G +T+  Q+FGE  + P   F+
Sbjct: 55  KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 113
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSA 177
            A+FDG++GMG+   A+  V P F NII Q +L+++VF FY NR +    + G   +   
Sbjct: 114 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG 173
Query: 178 HDPKELE 184
            DP+  E
Sbjct: 174 SDPQHYE 180

>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin Length = 335

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 58  KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
           K +   D  + + NGT+  +RY +G VSG+LSQD + +G +T+  Q+FGE  + P   F+
Sbjct: 62  KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 120
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
            A+FDG++GMG+   A+  V P F NII Q +L+++VF FY NR
Sbjct: 121 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR 164

>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 166

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 58  KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
           K +   D  + + NGT+  +RY +G VSG+LSQD + +G +T+  Q+FGE  + P   F+
Sbjct: 62  KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 120
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
            A+FDG++GMG+   A+  V P F NII Q +L+++VF FY NR
Sbjct: 121 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR 164

>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed With A Decapeptide Inhibitor Ch-66 Based On The 4-16 Fragment Of Rat Angiotensinogen Length = 335

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           +NG  F I YGSG V G+LSQD++ +G +T+  Q FGE  + P   F+ A+FDG+LGMG+
Sbjct: 71  ENGDDFTIHYGSGRVKGFLSQDSVTVGGITV-TQTFGEVTQLPLIPFMLAQFDGVLGMGF 129
Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELE 184
              AV GV P F +I+ Q +L++ VF  Y NR     L  GEV +    DP+  +
Sbjct: 130 PAQAVGGVTPVFDHILSQGVLKEKVFSVYYNR--GPHLLGGEV-VLGGSDPQHYQ 181

>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 72  GTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDN 131
           G  F+I+YG+G++SG +  D + +  LT+  Q FGE++ EPG TFV A+FDGILG+GY +
Sbjct: 79  GQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPS 138
Query: 132 IAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
           +AV GV P F N++ Q L++  +F  Y++  N E  A  E+
Sbjct: 139 LAVGGVTPVFDNMMAQNLVDLPMFSVYMSS-NPEGGAGSEL 178

>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. Length = 239

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 5/115 (4%)
Query: 58  KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
             Y   D    ++NGT  AI YG+G+++G+ SQD++ IGDL +K Q F EA  E    F+
Sbjct: 56  SMYESSDSSTYKENGTFGAIIYGTGSITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFL 115
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
              FDGILG+ +  I+V    P +YN++ Q L+++  F F+LNR N ++   GE+
Sbjct: 116 HRLFDGILGLSFQTISV----PVWYNMLNQGLVKERRFSFWLNR-NVDEEEGGEL 165

>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 176

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 43/69 (62%)
Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P++   LGGK +TLT  DYV + S +S  +C      MDIPPP GP W LG  FI KFY
Sbjct: 95  LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFY 154
Query: 61  TVFDMDNNQ 69
           T FD  NN+
Sbjct: 155 TEFDRRNNR 163

>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of A Pepsin From Atlantic Cod (Gadus Morhua) Length = 324

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 55/91 (60%)
Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
           + G    + YG+G + G L QDT+ +G  +  NQ  GE+  EPG    AA FDGILG+ Y
Sbjct: 66  ETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAY 125
Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLN 160
            +IA  G  P F N+  Q L+EK++F FYL+
Sbjct: 126 PSIAAAGAVPVFDNMGSQSLVEKDLFSFYLS 156

>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With Pepstatin Length = 326

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 64  DMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDG 123
           D    Q      +I YG+G+++G L  DT+++G ++  NQ+FG +  EPG     A FDG
Sbjct: 60  DSSTYQSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDG 119
Query: 124 ILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           ILG+ Y +I+  G  P F NI  Q L+ +++F  YL+ 
Sbjct: 120 ILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSA 157

>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 64  DMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDG 123
           D    Q      +I YG+G+++G L  DT+++G ++  NQ+FG +  EPG     A FDG
Sbjct: 60  DSSTYQSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDG 119
Query: 124 ILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           ILG+ Y +I+  G  P F NI  Q L+ +++F  YL+ 
Sbjct: 120 ILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSA 157

>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 70  KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
            NG  F+++YGSG+++G+   DTL +  + + NQ FG +  EPG  FV A+FDGI+G+ Y
Sbjct: 66  TNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAY 125
Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
             ++VD        ++Q+  L   VF  YL+  N +  + G V
Sbjct: 126 PALSVDEATTAMQGMVQEGALTSPVFSVYLS--NQQGSSGGAV 166

>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dimensional Structure Of The Hexagonal Crystal Form Of Porcine Pepsin At 2.3 Angstroms Resolution Length = 326

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 64  DMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDG 123
           D    +    + +I YG+G+++G L  DT+++G ++  NQ+FG +  EPG     A FDG
Sbjct: 60  DSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDG 119
Query: 124 ILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           ILG+ Y +I+  G  P F N+  Q L+ +++F  YL+ 
Sbjct: 120 ILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157

>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 64  DMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDG 123
           D    +    + +I YG+G+++G L  DT+++G ++  NQ+FG +  EPG     A FDG
Sbjct: 104 DSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDG 163
Query: 124 ILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           ILG+ Y +I+  G  P F N+  Q L+ +++F  YL+ 
Sbjct: 164 ILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 201

>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin. Evidence For A Flexible Subdomain Length = 326

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 64  DMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDG 123
           D    +    + +I YG+G+++G L  DT+++G ++  NQ+FG +  EPG     A FDG
Sbjct: 60  DSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDG 119
Query: 124 ILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           ILG+ Y +I+  G  P F N+  Q L+ +++F  YL+ 
Sbjct: 120 ILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157

>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex Reveals A Novel Crystal Packing Induced By Minor Chemical Alterations In The Inhibitor Length = 326

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 64  DMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDG 123
           D    +    + +I YG+G+++G L  DT+++G ++  NQ+FG +  EPG     A FDG
Sbjct: 60  DSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDG 119
Query: 124 ILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           ILG+ Y +I+  G  P F N+  Q L+ +++F  YL+ 
Sbjct: 120 ILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157

>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To Porcine Pepsin Length = 326

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 74  QFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIA 133
           + +I YG+G+++G L  DT+++G ++  NQ+FG +  EPG     A FDGILG+ Y +I+
Sbjct: 70  ELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSIS 129
Query: 134 VDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
             G  P F N+  Q L+ +++F  YL+ 
Sbjct: 130 ASGATPVFDNLWDQGLVSQDLFSVYLSS 157

>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine Pepsin Refined At 1.8 Angstroms Resolution Length = 326

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 74  QFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIA 133
           + +I YG+G+++G L  DT+++G ++  NQ+FG +  EPG     A FDGILG+ Y +I+
Sbjct: 70  ELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSIS 129
Query: 134 VDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
             G  P F N+  Q L+ +++F  YL+ 
Sbjct: 130 ASGATPVFDNLWDQGLVSQDLFSVYLSS 157

>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 74  QFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIA 133
           + +I YG+G+++G L  DT+++G ++  NQ+FG +  EPG     A FDGILG+ Y +I+
Sbjct: 114 ELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSIS 173
Query: 134 VDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
             G  P F N+  Q L+ +++F  YL+ 
Sbjct: 174 ASGATPVFDNLWDQGLVSQDLFSVYLSS 201

>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L. Length = 87

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 1  MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
          MPNV   +GGK F LTP  Y+LKV    ++ C+SGF  MD     GP+WILGDVF+  ++
Sbjct: 13 MPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMD-ATLLGPLWILGDVFMRPYH 71
Query: 61 TVFDMDN 67
          TVFD  N
Sbjct: 72 TVFDYGN 78

>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972 Length = 323

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 58/99 (58%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           Q  G   +I YG+G++ G L  DT+ + ++    Q  G + +EPG  F  A+FDGILGM 
Sbjct: 67  QNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMA 126
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKL 167
           Y ++A +   P F N++ + L+ +++F  Y++R   E +
Sbjct: 127 YPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESM 165

>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 57/90 (63%)
Query: 72  GTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDN 131
           G   +I YG+G++ G+L  DT+ + ++   NQ  G + ++PG  F  ++FDGILG+ Y +
Sbjct: 67  GKPLSIHYGTGSMEGFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPS 126
Query: 132 IAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           +A +   P F N++ + L+ +++F  Y++R
Sbjct: 127 LASEYSVPVFDNMMDRHLVARDLFSVYMDR 156

>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation, Kinetic Characterization And X-Ray Analysis At 2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf Chymosin Length = 323

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 58/99 (58%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           Q  G   +I YG+G++ G L  DT+ + ++    Q  G + +EPG  F  A+FDGILGM 
Sbjct: 67  QNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMA 126
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKL 167
           Y ++A +   P F N++ + L+ +++F  Y++R   E +
Sbjct: 127 YPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESM 165

>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral Inhibitor Length = 453

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
           +K+GT+  + Y SG VSG+ S+D + +G+L++  + F E I   GF  T+ A+ FDGILG
Sbjct: 191 EKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 249
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
           +G+ ++++  V+P    +  Q  +E  +F FYL
Sbjct: 250 LGWKDLSIGSVDPIVVELKNQNKIENALFTFYL 282

>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From Plasmodium Falciparum, In Complex With Pepstatin A Length = 329

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
           +K+GT+  + Y SG VSG+ S+D + +G+L++  + F E I   GF  T+ A+ FDGILG
Sbjct: 67  EKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 125
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
           +G+ ++++  V+P    +  Q  +E  +F FYL
Sbjct: 126 LGWKDLSIGSVDPIVVELKNQNKIENALFTFYL 158

>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum Length = 380

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
           +K+GT+  + Y SG VSG+ S+D + +G+L++  + F E I   GF  T+ A+ FDGILG
Sbjct: 118 EKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 176
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
           +G+ ++++  V+P    +  Q  +E  +F FYL
Sbjct: 177 LGWKDLSIGSVDPIVVELKNQNKIENALFTFYL 209

>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium Falciparum Length = 329

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
           +K+GT+  + Y SG VSG+ S+D + +G+L++  + F E I   GF  T+ A+ FDGILG
Sbjct: 67  EKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 125
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
           +G+ ++++  V+P    +  Q  +E  +F FYL
Sbjct: 126 LGWKDLSIGSVDPIVVELKNQNKIENALFTFYL 158

>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To 2.4 A Length = 331

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
           +K+GT+  + Y SG VSG+ S+D + +G+L++  + F E I   GF  T+ A+ FDGILG
Sbjct: 69  EKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 127
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
           +G+ ++++  V+P    +  Q  +E  +F FYL
Sbjct: 128 LGWKDLSIGSVDPIVVELKNQNKIENALFTFYL 160

>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In Complex With Inhibitor Eh58 Length = 331

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
           +K+GT+  + Y SG VSG+ S+D + +G+L++  + F E I   GF  T+ A+ FDGILG
Sbjct: 69  EKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 127
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
           +G+ ++++  V+P    +  Q  +E  +F FYL
Sbjct: 128 LGWKDLSIGSVDPIVVELKNQNKIENALFTFYL 160

>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 69  QKNGTQFAIRYGSGA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           Q +G  ++I YG G+  SG L++D + +G L IK Q   E  K    +F +   DG+LG+
Sbjct: 67  QADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTI-ELAKREAASFASGPNDGLLGL 125
Query: 128 GYDNIA-VDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           G+D I  V GV+ P  N+I Q L+ + +FG YL +
Sbjct: 126 GFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGK 160

>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 69  QKNGTQFAIRYGSGA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           Q +G  ++I YG G+  SG L++D + +G L IK Q   E  K    +F +   DG+LG+
Sbjct: 67  QADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTI-ELAKREAASFASGPNDGLLGL 125
Query: 128 GYDNIA-VDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           G+D I  V GV+ P  N+I Q L+ + +FG YL +
Sbjct: 126 GFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGK 160

>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In Complex With Pepstatin A Length = 328

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 59/95 (62%), Gaps = 7/95 (7%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIK----EPGFTFVAAKFDGI 124
           +K+GT+  I YGSG V GY S+D + +GDL++  + F E       EP ++   ++FDGI
Sbjct: 67  EKDGTKVEISYGSGTVRGYFSKDVISLGDLSLPYK-FIEVTDADDLEPIYS--GSEFDGI 123
Query: 125 LGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
           LG+G+ ++++  ++P    + +Q  ++  +F FYL
Sbjct: 124 LGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYL 158

>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease Plasmepsin 4 From The Malarial Parasite Plasmodium Malariae Bound To An Allophenylnorstatine Based Inhibitor Length = 327

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 59/95 (62%), Gaps = 7/95 (7%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIK----EPGFTFVAAKFDGI 124
           +K+GT+  I YGSG V G+ S+D + +G L++  + F E       EP +T  AA+FDGI
Sbjct: 67  EKDGTKVEITYGSGTVRGFFSKDLVTLGYLSLPYK-FIEVTDTDDLEPLYT--AAEFDGI 123
Query: 125 LGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
           LG+G+ ++++  ++P    +  Q  +++ +F FYL
Sbjct: 124 LGLGWKDLSIGSIDPIVVELKNQNKIDQALFTFYL 158

>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium Falciparum Length = 336

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
           +K+GT+  + Y SG VSG+ S+D + I +L+   + F E     GF   +   +FDGI+G
Sbjct: 74  EKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFPYK-FIEVTDTNGFEPAYTLGQFDGIVG 132
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
           +G+ ++++  V+P    +  Q  +E+ VF FYL
Sbjct: 133 LGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYL 165

>pdb|3IXV|A Chain A, Scorpion Hemocyanin Resting State Pseudo Atomic Model Built Cryo-Em Density Map Length = 626

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 229 LEYPGVELKSLRILNKQGPTDQLETFWQLIRMDE--VYVRDKELTEEYNIPYHIQHEDFK 286
           L +PGVE+  + I +K            L+ +     +  D+ +  +Y   +H+ HE F 
Sbjct: 383 LSFPGVEVVGVSINSKTANVITTLIKESLLELSHGINFGTDQSVKVKY---HHLDHEPFT 439
Query: 287 YEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKF 333
           Y I +ENNS   K   +RIFL  K D   N+L    QR LFIELDKF
Sbjct: 440 YNIVVENNSGAEKHSTVRIFLAPKYDELNNKLEPDEQRRLFIELDKF 486

>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial Pathogen Plasmodium Vivax Length = 375

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 57/95 (60%), Gaps = 7/95 (7%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIK----EPGFTFVAAKFDGI 124
           +K+GT+  I YGSG V G+ S+D + +G L++  + F E       EP ++  + +FDGI
Sbjct: 115 EKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYK-FIEVTDTDDLEPIYS--SVEFDGI 171
Query: 125 LGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
           LG+G+ ++++  ++P    +  Q  ++  +F FYL
Sbjct: 172 LGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL 206

>pdb|3HHS|B Chain B, Crystal Structure Of Manduca Sexta Prophenoloxidase Length = 684

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 29/202 (14%)
Query: 143 NIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPEYDHVGDG 202
           N+++  ++  N  G+Y + +N      G V     HDP        +   L ++  +GD 
Sbjct: 347 NLMESSIISPNR-GYYGDLHNM-----GHVFAAYTHDP--------DHRHLEQFGVMGDS 392
Query: 203 CSAS----YTEMQQWTNNII----EAINQGYAVTLEYPGVELKSLRILNKQGPTDQLETF 254
            +A     +    ++ +++     E +       L++PGV + S+ I   +  T  L T 
Sbjct: 393 ATAMRDPFFYRWHRFVDDVFNIYKEKLTPYTNERLDFPGVRVSSVGIEGARPNT--LRTL 450
Query: 255 WQLIRMDEVYVRDKELTEEYNIPY---HIQHEDFKYEITIENNSNETKTGIMRIFLGAKN 311
           WQ   ++    R  + T   ++     H+QH++F+Y I + N +     G +RIF+  K 
Sbjct: 451 WQQSTVE--LGRGLDFTPRGSVLARFTHLQHDEFQYVIEVNNTTGGNLMGTVRIFMAPKV 508
Query: 312 DIEGNELPLSAQRSLFIELDKF 333
           D  G  +  + QR L IELDKF
Sbjct: 509 DDNGQPMSFNKQRRLMIELDKF 530

>pdb|3HHS|A Chain A, Crystal Structure Of Manduca Sexta Prophenoloxidase Length = 694

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 13/139 (9%)
Query: 207 YTEMQQWTNNIIEAINQG------YAVT-LEYPGVELKSLRILNKQGPTDQLETFWQLIR 259
           +  +  W ++I ++  +       Y+ + LE PGV++ S+ + +  G  + L TFW  ++
Sbjct: 403 FYRVHAWVDDIFQSFKEAPHNVRPYSRSQLENPGVQVTSVAVESAGGQQNVLNTFW--MQ 460
Query: 260 MDEVYVRDKELTEE---YNIPYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGN 316
            D    +  + ++    Y    H+ H  F+Y I   N ++  +T + RIF+  K D    
Sbjct: 461 SDVNLSKGLDFSDRGPVYARFTHLNHRPFRYVIKANNTASARRTTV-RIFIAPKTDERNL 519
Query: 317 ELPLSAQRSLFIELDKFRV 335
              LS QR +FIE+D+F V
Sbjct: 520 PWALSDQRKMFIEMDRFVV 538

>pdb|1OXY|A Chain A, Crystallographic Analysis Of Oxygenated And Deoxygenated States Of Arthropod Hemocyanin Shows Unusual Differences Length = 628

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 247 PTDQLETFWQLIRMDEV---YVRDKELTEEYNIP-----------YHIQHEDFKYEITIE 292
           P  Q++      R+D V   ++R++EL  ++ I            YH+ HE F Y + ++
Sbjct: 389 PDIQVQDVTLHARVDNVVHTFMREQELELKHGINPGNARSIKAKYYHLDHEPFSYAVNVQ 448
Query: 293 NNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRV 335
           NNS   K   +RIFL  K D  GNE+     R   IELDKF+ 
Sbjct: 449 NNSASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDKFKT 491

>pdb|1LL1|A Chain A, Hydroxo Bridge Met Form Hemocyanin From Limulus Length = 628

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 247 PTDQLETFWQLIRMDEV---YVRDKELTEEYNIP-----------YHIQHEDFKYEITIE 292
           P  Q++      R+D V   ++R++EL  ++ I            YH+ HE F Y + ++
Sbjct: 389 PDIQVQDVTLHARVDNVVHTFMREQELELKHGINPGNARSIKARYYHLDHEPFSYAVNVQ 448
Query: 293 NNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRV 335
           NNS   K   +RIFL  K D  GNE+     R   IELDKF+ 
Sbjct: 449 NNSASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDKFKT 491

>pdb|1LLA|A Chain A, Crystal Structure Of Deoxygenated Limulus Polyphemus Subunit Ii Hemocyanin At 2.18 Angstroms Resolution: Clues For A Mechanism For Allosteric Regulation Length = 628

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 247 PTDQLETFWQLIRMDEV---YVRDKELTEEYNIP-----------YHIQHEDFKYEITIE 292
           P  Q++      R+D V   ++R++EL  ++ I            YH+ HE F Y + ++
Sbjct: 389 PDIQVQDVTLHARVDNVVHTFMREQELELKHGINPGNARSIKARYYHLDHEPFSYAVNVQ 448
Query: 293 NNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRV 335
           NNS   K   +RIFL  K D  GNE+     R   IELDKF+ 
Sbjct: 449 NNSASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDKFKT 491

>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex Lacteus Length = 340

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 22/171 (12%)
Query: 19  DYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIR 78
           DYV+ V + S +   S    + +   +   W+  D    K Y       +     + ++ 
Sbjct: 13  DYVVNVGVGSPATTYS----LLVDTGSSNTWLGAD----KSY--VKTSTSSATSDKVSVT 62
Query: 79  YGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVE 138
           YGSG+ SG    DT+ +G LTI  Q  G A ++ GF  V    DGILG+G  ++ V  + 
Sbjct: 63  YGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGFDGV----DGILGVGPVDLTVGTLS 118
Query: 139 PPFY--------NIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
           P           N+  Q  +  N+         +E   NGE+   +    K
Sbjct: 119 PHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSK 169

>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From Plasmodium Falciparum Length = 332

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFT--FVAAKFDGILG 126
           +K+ T   +   +G +SG  S+D + IG L++  + F E  +  GF   +  +  DG+ G
Sbjct: 71  EKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVPYK-FIEMTEIVGFEPFYSESDVDGVFG 129
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK 166
           +G+ ++++  ++P    +  Q  +E+ V+  YL   N  K
Sbjct: 130 LGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNK 169

>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen From Plasmodium Falciparum Length = 451

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFT--FVAAKFDGILG 126
           +K+ T   +   +G +SG  S+D + IG L++  + F E  +  GF   +  +  DG+ G
Sbjct: 190 EKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVPYK-FIEMTEIVGFEPFYSESDVDGVFG 248
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
           +G+ ++++  ++P    +  Q  +E+ V+  YL
Sbjct: 249 LGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYL 281

>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5 Length = 97

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 70 KNGTQFAIRYGSGAVSGYLSQDTLRI 95
          KNGT F I YGSG++SGYLSQDT+ +
Sbjct: 69 KNGTSFDIHYGSGSLSGYLSQDTVSV 94

>pdb|1HC1|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus Interruptus Refined At 3.2 Angstroms Resolution Length = 657

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 278 YHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKF 333
           + + H +F Y+IT+ NN++  +    RIFL    D  G  L L   R   IELDKF
Sbjct: 453 HRLNHNEFTYKITMSNNNDGERLATFRIFLCPIEDNNGITLTLDEARWFCIELDKF 508

>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans Length = 341

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 59  FYTVFDMDNNQKNGTQFAIRYGSGAVS-GYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
            YT      +Q  GT F I YG G+ S G L +DT+  G  +I  QVF +  K       
Sbjct: 64  IYTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITK------- 116
Query: 118 AAKFDGILGMGYD-NIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
            +   GILG+GY  N A    +     +  Q ++ KN +  YLN  N    A G++
Sbjct: 117 TSIPQGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNSPNA---ATGQI 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	336
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	2e-50
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	9e-28
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	1e-48
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	6e-29
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	2e-48
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	2e-26
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	2e-47
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	3e-26
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	4e-47
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	5e-28
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	1e-46
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	8e-22
1qdm_A	478	Prophytepsin; aspartic proteinases, saposin-like d	3e-46
1qdm_A	478	Prophytepsin; aspartic proteinases, saposin-like d	2e-27
1b5f_A	239	Protein (cardosin A); hydrolase, aspartic proteina	4e-46
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	8e-45
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	6e-29
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	4e-44
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	8e-29
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	5e-43
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	6e-25
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	6e-43
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	1e-23
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	2e-42
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	7e-20
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	1e-41
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	2e-26
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	1e-41
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	3e-24
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	2e-41
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	8e-21
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	3e-41
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	4e-21
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	1e-38
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	1e-18
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	2e-37
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	5e-20
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	2e-36
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	7e-19
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	5e-36
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	2e-20
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	5e-36
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	1e-21
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	7e-36
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	1e-19
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	3e-34
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	4e-21
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	4e-34
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	8e-21
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	1e-33
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	8e-18
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	5e-33
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	9e-18
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	6e-33
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	1e-17
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	2e-32
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	1e-29
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	1e-31
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	4e-19
1b5f_B	87	Protein (cardosin A); hydrolase, aspartic proteina	6e-30
3ixv_A	626	Hemocyanin AA6 chain; HC, phenolxoidase activity,	2e-20
3hhs_B	684	Propo-P1, phenoloxidase subunit 1; alpha helix, be	3e-20
3hhs_B	684	Propo-P1, phenoloxidase subunit 1; alpha helix, be	5e-04
1lla_A	628	Hemocyanin (subunit type II); oxygen transport; 2.	7e-20
3hhs_A	694	Propo-P2, phenoloxidase subunit 2; alpha helix, be	3e-19
3hhs_A	694	Propo-P2, phenoloxidase subunit 2; alpha helix, be	2e-04
1hc1_A	657	Arthropodan hemocyanin; oxygen transport; 3.20A {P	1e-18
3gwj_A	674	Arylphorin; mono-glucosylated N-glycan, stability,	2e-16
1lya_A	97	Cathepsin D; lysosomal aspartic protease; HET: NAG	3e-10
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	3e-06
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329

 Score =  169 bits (431), Expect = 2e-50
 Identities = 61/104 (58%), Positives = 74/104 (71%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           + NGT+FAI+YG+G++ GY+SQDTL IGDLTI  Q F EA  EPG TF   KFDGILG+G
Sbjct: 66  KANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLG 125

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
           YD I+VD V PPFYN IQQ LL++  F FYL   + +    GE 
Sbjct: 126 YDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEA 169

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329

 Score =  109 bits (275), Expect = 9e-28
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P++     G NFT+ P DY L+VS      C+S    MD P P GP+ I+GD F+ K+Y
Sbjct: 258 LPDLIFNFNGYNFTIGPYDYTLEVS----GSCISAITPMDFPEPVGPLAIVGDAFLRKYY 313

Query: 61  TVFDMDNNQ 69
           +++D+ NN 
Sbjct: 314 SIYDLGNNA 322

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351

 Score =  165 bits (421), Expect = 1e-48
 Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 1/104 (0%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
            + G  F+I+YG+G++SG +  D + +  LT+  Q FGE++ EPG TFV A+FDGILG+G
Sbjct: 76  SQPGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLG 135

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
           Y ++AV GV P F N++ Q L++  +F  Y++  N E  A  E+
Sbjct: 136 YPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSS-NPEGGAGSEL 178

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351

 Score =  113 bits (284), Expect = 6e-29
 Identities = 37/69 (53%), Positives = 47/69 (68%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           MP+V   + G  +TL+PT Y L   +     C SGF G+DI PPAGP+WILGDVFI +FY
Sbjct: 267 MPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFY 326

Query: 61  TVFDMDNNQ 69
           +VFD  NN+
Sbjct: 327 SVFDRGNNR 335

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329

 Score =  164 bits (417), Expect = 2e-48
 Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 2/104 (1%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
             NG  F+++YGSG+++G+   DTL +  + + NQ FG +  EPG  FV A+FDGI+G+ 
Sbjct: 65  STNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLA 124

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
           Y  ++VD        ++Q+  L   VF  YL+         G V
Sbjct: 125 YPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSS--GGAV 166

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329

 Score =  105 bits (265), Expect = 2e-26
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAG-PIWILGDVFIGKF 59
           +P++  I+ G  F L P+ Y+L  +      C  G     +    G P+WILGDVF+  +
Sbjct: 257 LPSLTFIINGVEFPLPPSSYILSNN----GYCTVGVEPTYLSSQNGQPLWILGDVFLRSY 312

Query: 60  YTVFDMDNNQ 69
           Y+V+D+ NN+
Sbjct: 313 YSVYDLGNNR 322

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324

 Score =  161 bits (410), Expect = 2e-47
 Identities = 40/97 (41%), Positives = 55/97 (56%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
            + G    + YG+G + G L QDT+ +G  +  NQ  GE+  EPG    AA FDGILG+ 
Sbjct: 65  VETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLA 124

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
           Y +IA  G  P F N+  Q L+EK++F FYL+     
Sbjct: 125 YPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGAN 161

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324

 Score =  105 bits (264), Expect = 3e-26
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P++   + G    L P+ Y+        + C SG     +P     +WI GDVF+  +Y
Sbjct: 253 LPDITFTINGVKQPLPPSAYIEG----DQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYY 308

Query: 61  TVFDMDNNQ 69
           T++D  NN+
Sbjct: 309 TIYDRTNNK 317

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370

 Score =  162 bits (411), Expect = 4e-47
 Identities = 34/97 (35%), Positives = 58/97 (59%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           +    + +I YG+G+++G L  DT+++G ++  NQ+FG +  EPG     A FDGILG+ 
Sbjct: 109 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 168

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
           Y +I+  G  P F N+  Q L+ +++F  YL+  +  
Sbjct: 169 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 205

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370

 Score =  111 bits (279), Expect = 5e-28
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P++   + G  + L+P+ Y+L+        C SGF GMD+P  +G +WILGDVFI ++Y
Sbjct: 299 LPDIVFTIDGVQYPLSPSAYILQDD----DSCTSGFEGMDVPTSSGELWILGDVFIRQYY 354

Query: 61  TVFDMDNNQ 69
           TVFD  NN+
Sbjct: 355 TVFDRANNK 363

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323

 Score =  159 bits (405), Expect = 1e-46
 Identities = 34/97 (35%), Positives = 57/97 (58%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           Q  G   +I YG+G++ G L  DT+ + ++    Q  G + +EPG  F  A+FDGILGM 
Sbjct: 67  QNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMA 126

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
           Y ++A +   P F N++ + L+ +++F  Y++R   E
Sbjct: 127 YPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQE 163

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323

 Score = 93.1 bits (232), Expect = 8e-22
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           MP V   + GK + LTP+ Y  +        C SGF   +        WILGDVFI ++Y
Sbjct: 256 MPTVVFEINGKMYPLTPSAYTSQDQ----GFCTSGFQSENH----SQKWILGDVFIREYY 307

Query: 61  TVFDMDNNQ 69
           +VFD  NN 
Sbjct: 308 SVFDRANNL 316

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478

 Score =  162 bits (412), Expect = 3e-46
 Identities = 49/98 (50%), Positives = 71/98 (72%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           +KNG   AI+YG+G+++GY S+D++ +GDL +K+Q F EA KEPG TF+ AKFDGILG+G
Sbjct: 106 KKNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLG 165

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK 166
           +  I+V    P +Y +I+Q L+   VF F+LNR+  E 
Sbjct: 166 FKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEG 203

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478

 Score =  111 bits (278), Expect = 2e-27
 Identities = 36/69 (52%), Positives = 51/69 (73%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           MP+++  +GGK F L P +Y+LKV   +++ C+SGF  MDIPPP GP+WILGDVF+G ++
Sbjct: 403 MPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYH 462

Query: 61  TVFDMDNNQ 69
           TVFD    +
Sbjct: 463 TVFDYGKLR 471

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239

 Score =  155 bits (395), Expect = 4e-46
 Identities = 42/98 (42%), Positives = 64/98 (65%), Gaps = 4/98 (4%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           ++NGT  AI YG+G+++G+ SQD++ IGDL +K Q F EA  E    F+   FDGILG+ 
Sbjct: 67  KENGTFGAIIYGTGSITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLS 126

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK 166
           +  I+V    P +YN++ Q L+++  F F+LNR   E+
Sbjct: 127 FQTISV----PVWYNMLNQGLVKERRFSFWLNRNVDEE 160

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383

 Score =  156 bits (396), Expect = 8e-45
 Identities = 44/102 (43%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           + NGT+  +RY +G VSG+LSQD + +G +T+  Q+FGE  + P   F+ A+FDG++GMG
Sbjct: 116 KHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFMLAEFDGVVGMG 174

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG 170
           +   A+  V P F NII Q +L+++VF FY NR +    + G
Sbjct: 175 FIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLG 216

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383

 Score =  114 bits (286), Expect = 6e-29
 Identities = 35/69 (50%), Positives = 43/69 (62%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P++   LGGK +TLT  DYV + S +S  +C      MDIPPP GP W LG  FI KFY
Sbjct: 308 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFY 367

Query: 61  TVFDMDNNQ 69
           T FD  NN+
Sbjct: 368 TEFDRRNNR 376

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341

 Score =  153 bits (389), Expect = 4e-44
 Identities = 44/102 (43%), Positives = 67/102 (65%), Gaps = 1/102 (0%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           + NGT+  +RY +G VSG+LSQD + +G +T+  Q+FGE  + P   F+ A+FDG++GMG
Sbjct: 73  KHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFMLAEFDGVVGMG 131

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG 170
           +   A+  V P F NII Q +L+++VF FY NR +    + G
Sbjct: 132 FIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLG 173

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341

 Score =  112 bits (283), Expect = 8e-29
 Identities = 35/69 (50%), Positives = 43/69 (62%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P++   LGGK +TLT  DYV + S +S  +C      MDIPPP GP W LG  FI KFY
Sbjct: 265 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFY 324

Query: 61  TVFDMDNNQ 69
           T FD  NN+
Sbjct: 325 TEFDRRNNR 333

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375

 Score =  151 bits (383), Expect = 5e-43
 Identities = 27/98 (27%), Positives = 55/98 (56%), Gaps = 1/98 (1%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKE-PGFTFVAAKFDGILGM 127
           +K+GT+  I YGSG V G+ S+D + +G L++  +       +     + + +FDGILG+
Sbjct: 115 EKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGL 174

Query: 128 GYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
           G+ ++++  ++P    +  Q  ++  +F FYL  ++  
Sbjct: 175 GWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVH 212

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375

 Score =  102 bits (256), Expect = 6e-25
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           MP ++       +TL P  Y+  +     ++C+     +DI       +ILGD F+ K++
Sbjct: 302 MPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDID---SNTFILGDPFMRKYF 358

Query: 61  TVFDMDNNQ 69
           TVFD D   
Sbjct: 359 TVFDYDKES 367

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340

 Score =  150 bits (381), Expect = 6e-43
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 12/112 (10%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
                + ++ YGSG+ SG    DT+ +G LTI  Q  G A ++ GF       DGILG+G
Sbjct: 53  SATSDKVSVTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGFDG----VDGILGVG 108

Query: 129 YDNIAVDGVEPP--------FYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
             ++ V  + P           N+  Q  +  N+         +E   NGE+
Sbjct: 109 PVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGEL 160

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340

 Score = 98.6 bits (246), Expect = 1e-23
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIA-----SSSMCLSGFAGMDIPPPAGPIWILGDVF 55
           + ++   +GG+ F LT    +   ++      S+S        +      G  +I G  F
Sbjct: 253 LQSLFFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTF 312

Query: 56  IGKFYTVFDMDNNQ 69
           + +FY+V+D  N +
Sbjct: 313 LERFYSVYDTTNKR 326

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325

 Score =  148 bits (376), Expect = 2e-42
 Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 69  QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           Q +G  ++I YG G + SG L++D + +G L IK Q    A +E   +F +   DG+LG+
Sbjct: 67  QADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAA-SFASGPNDGLLGL 125

Query: 128 GYDNI-AVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
           G+D I  V GV+ P  N+I Q L+ + +FG YL +        GE 
Sbjct: 126 GFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNG--GGGEY 169

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325

 Score = 87.7 bits (218), Expect = 7e-20
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
              +   + G +F ++P   V +        C++GF   +         I+GD F+   Y
Sbjct: 257 FKPLVFSINGASFQVSPDSLVFEEF---QGQCIAGFGYGN-----WGFAIIGDTFLKNNY 308

Query: 61  TVFDMDNNQ 69
            VF+    +
Sbjct: 309 VVFNQGVPE 317

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453

 Score =  149 bits (378), Expect = 1e-41
 Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 3/99 (3%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPG--FTFVAAKFDGILG 126
           +K+GT+  + Y SG VSG+ S+D + +G+L++  + F E I   G   T+ A+ FDGILG
Sbjct: 191 EKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 249

Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
           +G+ ++++  V+P    +  Q  +E  +F FYL  ++  
Sbjct: 250 LGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKH 288

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453

 Score =  107 bits (270), Expect = 2e-26
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P  +       +TL P  Y+  +      +C+    G+D P P    +ILGD F+ K++
Sbjct: 378 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 434

Query: 61  TVFDMDNNQ 69
           TVFD DN+ 
Sbjct: 435 TVFDYDNHS 443

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451

 Score =  149 bits (377), Expect = 1e-41
 Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFT--FVAAKFDGILG 126
           +K+ T   +   +G +SG  S+D + IG L++  + F E  +  GF   +  +  DG+ G
Sbjct: 190 EKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVPYK-FIEMTEIVGFEPFYSESDVDGVFG 248

Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
           +G+ ++++  ++P    +  Q  +E+ V+  YL   N  
Sbjct: 249 LGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKN 287

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451

 Score =  101 bits (254), Expect = 3e-24
 Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P ++     K +TL P  Y+  +    S++C+     +D+       ++LGD F+ K++
Sbjct: 377 LPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDLE---KNTFVLGDPFMRKYF 433

Query: 61  TVFDMDNNQ 69
           TV+D DN+ 
Sbjct: 434 TVYDYDNHT 442

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361

 Score =  146 bits (371), Expect = 2e-41
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 11/104 (10%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAK-----FDG 123
           ++      I YG+G  +G   +D++ +G  T+K Q         G T   +       DG
Sbjct: 72  KETDYNLNITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDG 131

Query: 124 ILGMGYDNIAV------DGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           I G  Y +         D       N+ +Q L+   VF  Y+N 
Sbjct: 132 IFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNT 175

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361

 Score = 91.0 bits (226), Expect = 8e-21
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMD-IPPPAGPIWILGDVFIGKF 59
                ++L     +    D  + +S     +  SG   M  + P  G  +I+G++F+  F
Sbjct: 279 KTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFF 338

Query: 60  YTVFDMDNNQ 69
             V+D   N+
Sbjct: 339 VNVYDFGKNR 348

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330

 Score =  145 bits (368), Expect = 3e-41
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 3/99 (3%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
             +G      + +G+  G   +D+L I  LT   Q    A  E          D ++G+ 
Sbjct: 69  ISDGNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLA-DELSQEVCILSADVVVGIA 127

Query: 129 YDNIA-VDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK 166
                     +    N +++ L+   VF  +  R+   +
Sbjct: 128 APGCPNALKGKTVLENFVEENLI-APVFSIHHARFQDGE 165

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330

 Score = 91.2 bits (227), Expect = 4e-21
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P+V  ++ G+NF ++   Y+ +      ++C SGF     P      + +GD F+  +Y
Sbjct: 262 LPDVTFVINGRNFNISSQYYIQQNG----NLCYSGF----QPCGHSDHFFIGDFFVDHYY 313

Query: 61  TVFDMDNNQ 69
           + F+ +N  
Sbjct: 314 SEFNWENKT 322

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383

 Score =  140 bits (354), Expect = 1e-38
 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEA--IKEPGFTFVAAKFDGILG 126
           +  G    ++Y  G+ +G++ +D + I      + +   A   +   F     K++GILG
Sbjct: 62  RSKGFDVTVKYTQGSWTGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILG 121

Query: 127 MGYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGE 171
           + Y  +A     +E  F +++ Q  +  NVF   +         +G 
Sbjct: 122 LAYATLAKPSSSLETFFDSLVTQANI-PNVFSMQMCGAGLPVAGSGT 167

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383

 Score = 84.9 bits (210), Expect = 1e-18
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 1   MPNVDIILGGKN------FTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDV 54
            P + I L  +N       T+ P  Y+  +        L+         P+    ++G  
Sbjct: 278 FPKISIYLRDENSSRSFRITILPQLYIQPMM----GAGLNYECYRFGISPSTNALVIGAT 333

Query: 55  FIGKFYTVFDMDNNQ 69
            +  FY +FD    +
Sbjct: 334 VMEGFYVIFDRAQKR 348

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329

 Score =  135 bits (342), Expect = 2e-37
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 69  QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           + +G  ++I YG G + SG +  D + IG  ++  Q    A +            G++G+
Sbjct: 69  KVSGASWSISYGDGSSSSGDVYTDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGL 128

Query: 128 GYDNIAVDGVEPP---FYNIIQQKLLEKNVFGFYLNR 161
            +D+       P    F N      L + +F   L  
Sbjct: 129 AFDSGNQVRPHPQKTWFSNAASS--LAEPLFTADLRH 163

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329

 Score = 88.1 bits (219), Expect = 5e-20
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P+    +G    T+      L      SS C  G            I I GDV +    
Sbjct: 259 LPSFSFGVGSSTITIPGDLLNLTPLEEGSSTCFGGLQS----SSGIGINIFGDVALKAAL 314

Query: 61  TVFDMDNNQ 69
            VFD+ N +
Sbjct: 315 VVFDLGNER 323

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323

 Score =  133 bits (336), Expect = 2e-36
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 69  QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           + +G  ++I YG G + SG + +D + +G ++  +Q    A K           DG+LG+
Sbjct: 65  KIDGATWSISYGDGSSASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGL 124

Query: 128 GYDNIAVDGVEP--PFYNIIQQKLLEKNVFGFYLNR 161
            + +I      P   F++ ++   L + +F   L  
Sbjct: 125 AFSSINTVQPTPQKTFFDNVKS-SLSEPIFAVALKH 159

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323

 Score = 85.0 bits (211), Expect = 7e-19
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P+  + +G    T+             +      F G+          I GDVF+   Y
Sbjct: 254 LPDFSVTIGDYTATVPGEYISFADV--GNGQT---FGGIQSNSG-IGFSIFGDVFLKSQY 307

Query: 61  TVFDMDNNQ 69
            VFD    +
Sbjct: 308 VVFDASGPR 316

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323

 Score =  131 bits (333), Expect = 5e-36
 Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 69  QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           + +G  ++I YG G + SG +  D++ +G +T   Q    A +           DG+LG+
Sbjct: 65  ELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGL 124

Query: 128 GYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNR 161
            + +I       +  F++ ++   L + +F   L  
Sbjct: 125 AFSSINTVQPQSQTTFFDTVKS-SLAQPLFAVALKH 159

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323

 Score = 89.6 bits (223), Expect = 2e-20
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P+  + + G   T+  +      S    S CL G              I GD+F+   Y
Sbjct: 253 LPDFSVSISGYTATVPGSLINYGPS-GDGSTCLGGIQS----NSGIGFSIFGDIFLKSQY 307

Query: 61  TVFDMDNNQ 69
            VFD D  Q
Sbjct: 308 VVFDSDGPQ 316

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325

 Score =  131 bits (333), Expect = 5e-36
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 69  QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           + +G  + I YG G + SG + +DT+ +G +T   Q    A K           DG+LG+
Sbjct: 64  KLSGYSWDISYGDGSSASGDVYRDTVTVGGVTTNKQAVEAASKISSEFVQDTANDGLLGL 123

Query: 128 GYDNIAV---DGVEPPFYNIIQQKLLEKNVFGFYLNR 161
            + +I           F  +  Q  L+  +F   L  
Sbjct: 124 AFSSINTVQPKAQTTFFDTVKSQ--LDSPLFAVQLKH 158

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325

 Score = 93.1 bits (232), Expect = 1e-21
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P+  +++G     +             SS C  G            + ILGDVF+   Y
Sbjct: 254 LPDFTVVIGDYKAVVPGKYINYAPVSTGSSTCYGGI----QSNSGLGLSILGDVFLKSQY 309

Query: 61  TVFDMDNNQ 69
            VF+ +  +
Sbjct: 310 VVFNSEGPK 318

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329

 Score =  131 bits (332), Expect = 7e-36
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 70  KNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
            +G  ++I YG G + SG +  DT+ +G LT+  Q    A K        +  DG+LG+ 
Sbjct: 69  LSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLA 128

Query: 129 YDNIAVDGVEP--PFYNIIQQKLLEKNVFGFYLNR 161
           +  +          F++   +  L+  VF   L  
Sbjct: 129 FSTLNTVSPTQQKTFFDNA-KASLDSPVFTADLGY 162

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329

 Score = 86.9 bits (216), Expect = 1e-19
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 6/76 (7%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P+    +G     +             SS C  G            I I GDV +   +
Sbjct: 258 LPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQS----SAGIGINIFGDVALKAAF 313

Query: 61  TVFDMDNNQKNGTQFA 76
            VF+       G  FA
Sbjct: 314 VVFNGATTPTLG--FA 327

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342

 Score =  127 bits (321), Expect = 3e-34
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 69  QKNGTQFAIRYGSGA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           Q   T+F I+YG G+   G L +DT+ IG +++++Q+F          +  +   GILG+
Sbjct: 74  QNLNTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANV-------WSTSARKGILGI 126

Query: 128 GYDNIAVDGVEPP--FYNIIQQKLLEKNVFGFYLNRYNTE 165
           G+ +      +      ++  Q ++ K  +  YLN     
Sbjct: 127 GFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEAS 166

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342

 Score = 91.3 bits (227), Expect = 4e-21
 Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 1   MPNVDI-ILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKF 59
              +D         ++  ++++ +            F   ++        ILGD F+   
Sbjct: 259 SGTIDFQFGNNLKISVPVSEFLFQTY----YTSGKPFPKCEVRIRESEDNILGDNFLRSA 314

Query: 60  YTVFDMDNNQ 69
           Y V+++D+ +
Sbjct: 315 YVVYNLDDKK 324

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342

 Score =  127 bits (320), Expect = 4e-34
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 69  QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           Q   T F I YG G +  G L +DT+  G ++IKNQV  +           +   GILG+
Sbjct: 74  QDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDST-------SIDQGILGV 126

Query: 128 GYDNIAVDGVEPP-FYNIIQQKLLEKNVFGFYLNRYNTE 165
           GY      G        + +Q ++ KN +  YLN  +  
Sbjct: 127 GYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAA 165

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342

 Score = 90.5 bits (225), Expect = 8e-21
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 1   MPNVDI-ILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKF 59
             +V          ++  +++   +           +    +        ILGD F+   
Sbjct: 259 SGDVVFNFSKNAKISVPASEFAASLQ----GDDGQPYDKCQLLFDVNDANILGDNFLRSA 314

Query: 60  YTVFDMDNNQ 69
           Y V+D+D+N+
Sbjct: 315 YIVYDLDDNE 324

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334

 Score =  125 bits (316), Expect = 1e-33
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 69  QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           Q     F+I YG   +  G   +DT+  G ++IKNQ F +           +   GI+G+
Sbjct: 74  QNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTT-------SVDQGIMGI 126

Query: 128 GYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
           G+       +  +     + +Q ++ KN +  YLN  +  
Sbjct: 127 GFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDAS 166

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334

 Score = 82.0 bits (203), Expect = 8e-18
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 1   MPNVDI-ILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKF 59
             +       G   T+  ++ +LK S   SS+C  G +  D         ILGD F+ + 
Sbjct: 257 SGDAVFNFDQGVKITVPLSELILKDS--DSSICYFGISRNDA-------NILGDNFLRRA 307

Query: 60  YTVFDMDNNQ 69
           Y V+D+D+  
Sbjct: 308 YIVYDLDDKT 317

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455

 Score =  126 bits (317), Expect = 5e-33
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRI--GDLTIKNQVFGEAIKEPGFTFVAAKFDGILG 126
           +       + Y  G   G L  D + I  G             +   F    + ++GILG
Sbjct: 123 RDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILG 182

Query: 127 MGYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           + Y  IA   D +EP F ++++Q  +  N+F   L  
Sbjct: 183 LAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCG 218

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455

 Score = 82.7 bits (204), Expect = 9e-18
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 13/77 (16%)

Query: 1   MPNVDIILGGK------NFTLTPTDYVLKVSIA--SSSMCLSGFAGMDIPPPAGPIWILG 52
            P + + L G+        T+ P  Y+  V     S   C            +    ++G
Sbjct: 342 FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFA-----ISQSSTGTVMG 396

Query: 53  DVFIGKFYTVFDMDNNQ 69
            V +  FY VFD    +
Sbjct: 397 AVIMEGFYVVFDRARKR 413

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395

 Score =  125 bits (314), Expect = 6e-33
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRI--GDLTIKNQVFGEAIKEPGFTFVAAKFDGILG 126
           +       + Y  G   G L  D + I  G             +   F    + ++GILG
Sbjct: 70  RDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILG 129

Query: 127 MGYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           + Y  IA   D +EP F ++++Q  +  N+F   L  
Sbjct: 130 LAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCG 165

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395

 Score = 82.2 bits (203), Expect = 1e-17
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 13/77 (16%)

Query: 1   MPNVDIILGGK------NFTLTPTDYVLKVS--IASSSMCLSGFAGMDIPPPAGPIWILG 52
            P + + L G+        T+ P  Y+  V     S   C            +    ++G
Sbjct: 289 FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFA-----ISQSSTGTVMG 343

Query: 53  DVFIGKFYTVFDMDNNQ 69
            V +  FY VFD    +
Sbjct: 344 AVIMEGFYVVFDRARKR 360

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241

 Score =  120 bits (302), Expect = 2e-32
 Identities = 39/71 (54%), Positives = 54/71 (76%)

Query: 96  GDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVF 155
           G + ++ QVFGEA K+PG TF+AAKFDGILGM Y  I+V+ V P F N++QQKL+++N+F
Sbjct: 1   GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIF 60

Query: 156 GFYLNRYNTEK 166
            FYL+R    +
Sbjct: 61  SFYLSRDPDAQ 71

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241

 Score =  112 bits (283), Expect = 1e-29
 Identities = 45/69 (65%), Positives = 57/69 (82%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P + + LGGK + L+P DY LKVS A  ++CLSGF GMDIPPP+GP+WILGDVFIG++Y
Sbjct: 166 LPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYY 225

Query: 61  TVFDMDNNQ 69
           TVFD DNN+
Sbjct: 226 TVFDRDNNR 234

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339

 Score =  120 bits (302), Expect = 1e-31
 Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 18/108 (16%)

Query: 69  QKNGTQFAIRYGSGAVS-GYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           +  G  F IRYG G+ S G   +DT+ I  ++I  Q   +  +        +   GILG+
Sbjct: 68  KNLGAAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQT-------SVDQGILGI 120

Query: 128 GYD------NIAVDGVEPPFYNI----IQQKLLEKNVFGFYLNRYNTE 165
           GY       + +     P + N+     +Q  +  N +  YLN  + E
Sbjct: 121 GYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAE 168

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339

 Score = 85.5 bits (212), Expect = 4e-19
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
              V     G   T+  T+YV +        CL G    D         ILGD F+   Y
Sbjct: 264 GTTVFNFGNGAKITVPNTEYVYQNG---DGTCLWGIQPSDD-------TILGDNFLRHAY 313

Query: 61  TVFDMDNNQ 69
            ++++D N 
Sbjct: 314 LLYNLDANT 322

>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 87

 Score =  108 bits (272), Expect = 6e-30
 Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 1  MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
          MPNV   +GGK F LTP  Y+LKV    ++ C+SGF  MD     GP+WILGDVF+  ++
Sbjct: 13 MPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMD-ATLLGPLWILGDVFMRPYH 71

Query: 61 TVFDMDNNQ 69
          TVFD  N  
Sbjct: 72 TVFDYGNLL 80

>3ixv_A Hemocyanin AA6 chain; HC, phenolxoidase activity, tyrosinase (TY), catecholoxidase (CO), enzyme, SDS, cryo-EM, single particle analysis; 6.80A {Androctonus australis} PDB: 3ixw_A Length = 626

 Score = 90.8 bits (225), Expect = 2e-20
 Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 228 TLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPY-HIQHEDFK 286
            L +PGVE+  + I +K    + + T  +   ++  +  +    +   + Y H+ HE F 
Sbjct: 382 ELSFPGVEVVGVSINSK--TANVITTLIKESLLELSHGINFGTDQSVKVKYHHLDHEPFT 439

Query: 287 YEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH 336
           Y I +ENNS   K   +RIFL  K D   N+L    QR LFIELDKF   
Sbjct: 440 YNIVVENNSGAEKHSTVRIFLAPKYDELNNKLEPDEQRRLFIELDKFFYT 489

>3hhs_B Propo-P1, phenoloxidase subunit 1; alpha helix, beta strand, melanin biosynthesis, metal-bindin monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta} Length = 684

 Score = 90.8 bits (225), Expect = 3e-20
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 228 TLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPY-HIQHEDFK 286
            L++PGV + S+ I  +    + L T WQ   ++     D          + H+QH++F+
Sbjct: 426 RLDFPGVRVSSVGI--EGARPNTLRTLWQQSTVELGRGLDFTPRGSVLARFTHLQHDEFQ 483

Query: 287 YEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH 336
           Y I + N +     G +RIF+  K D  G  +  + QR L IELDKF   
Sbjct: 484 YVIEVNNTTGGNLMGTVRIFMAPKVDDNGQPMSFNKQRRLMIELDKFSQA 533

>3hhs_B Propo-P1, phenoloxidase subunit 1; alpha helix, beta strand, melanin biosynthesis, metal-bindin monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta} Length = 684

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 19/88 (21%)

Query: 159 LNRYNTEKLANG----------EVPIPSAHDPK--------ELESRIENKYQLPEYDHVG 200
           + RYN E++ NG            PI   + PK            R          D   
Sbjct: 242 IGRYNVERMCNGLPQVKPFSDFSAPIEEGYFPKLDSQVASRTWPPRFAG-SVFRNLDRTV 300

Query: 201 DGCSASYTEMQQWTNNIIEAINQGYAVT 228
           D       ++  W +  +EAI +     
Sbjct: 301 DQVKIDVRKLFTWRDQFLEAIQKMAIKM 328

>1lla_A Hemocyanin (subunit type II); oxygen transport; 2.18A {Limulus polyphemus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1nol_A 1ll1_A 1oxy_A Length = 628

 Score = 89.6 bits (222), Expect = 7e-20
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 228 TLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPY-HIQHEDFK 286
            L +P ++++ + +       + + TF +   ++  +  +          Y H+ HE F 
Sbjct: 385 VLNFPDIQVQDVTL--HARVDNVVHTFMREQELELKHGINPGNARSIKARYYHLDHEPFS 442

Query: 287 YEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH 336
           Y + ++NNS   K   +RIFL  K D  GNE+     R   IELDKF+  
Sbjct: 443 YAVNVQNNSASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDKFKTD 492

>3hhs_A Propo-P2, phenoloxidase subunit 2; alpha helix, beta strand, melanin biosynthesis, metal-bindin monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta} Length = 694

 Score = 87.7 bits (217), Expect = 3e-19
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 2/109 (1%)

Query: 229 LEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPY-HIQHEDFKY 287
           LE PGV++ S+ + +  G  + L TFW    ++     D          + H+ H  F+Y
Sbjct: 432 LENPGVQVTSVAVESAGGQQNVLNTFWMQSDVNLSKGLDFSDRGPVYARFTHLNHRPFRY 491

Query: 288 EITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH 336
            I   NN+   +   +RIF+  K D       LS QR +FIE+D+F V 
Sbjct: 492 VIKA-NNTASARRTTVRIFIAPKTDERNLPWALSDQRKMFIEMDRFVVP 539

>3hhs_A Propo-P2, phenoloxidase subunit 2; alpha helix, beta strand, melanin biosynthesis, metal-bindin monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta} Length = 694

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 19/88 (21%)

Query: 159 LNRYNTEKLANG----------EVPIPSAHDPK--------ELESRIENKYQLPEYDHVG 200
           + RYN E+L N             PIP A+ PK            R     +  +     
Sbjct: 248 IARYNCERLCNSLKRVKKFSDWREPIPEAYYPKLDSLTSARGWPPRQAG-MRWQDLKRPV 306

Query: 201 DGCSASYTEMQQWTNNIIEAINQGYAVT 228
           DG + +  +M+++  NI EAI  G  + 
Sbjct: 307 DGLNVTIDDMERYRRNIEEAIATGNVIL 334

>1hc1_A Arthropodan hemocyanin; oxygen transport; 3.20A {Panulirus interruptus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1hc2_A 1hc3_A 1hc4_A 1hc5_A 1hc6_A 1hcy_A* Length = 657

 Score = 86.1 bits (213), Expect = 1e-18
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 229 LEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVY-VRDKELTEEYNIP---YHIQHED 284
           LE+ G+ +  + I  +      L TF+   +   +  V   E  E+  I    + + H +
Sbjct: 406 LEFSGMVVNGVAIDGE------LITFFDEFQYSLINAVDSGENIEDVEINARVHRLNHNE 459

Query: 285 FKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH 336
           F Y+IT+ NN++  +    RIFL    D  G  L L   R   IELDKF   
Sbjct: 460 FTYKITMSNNNDGERLATFRIFLCPIEDNNGITLTLDEARWFCIELDKFFQK 511

>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosyla glycoprotein, secreted, storage protein, oxygen transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea pernyi} Length = 674

 Score = 79.2 bits (195), Expect = 2e-16
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 17/116 (14%)

Query: 229 LEYPGVELKSLRILNKQGPTDQLETFWQLIRMD---EVYVRDKELTEEYNIPY-----HI 280
           L + GV++ ++ +       D+L TF++    D    V++ ++EL  +Y          +
Sbjct: 431 LHFVGVKVNNVVV-------DKLVTFFEYYDFDATNTVFLTEEELKTKYPHNLKVRQPRL 483

Query: 281 QHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH 336
            H+ F   I I   ++     +++IF+G K +  G  + L      F E+D F   
Sbjct: 484 NHQPFNINIDI--KADVATDAVVKIFMGPKYNENGFPITLENDWMKFFEMDWFTHK 537

>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGD 97
           KNGT F I YGSG++SGYLSQDT+ +  
Sbjct: 68 VKNGTSFDIHYGSGSLSGYLSQDTVSVPC 96

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 21/128 (16%)

Query: 73  TQFAIRYGSGAVS-GYLSQDTLRIGDLTIKNQVFGEAIKEPGFTF-----------VAAK 120
              +    +     G L +D L I       Q  G  +  P F F           +   
Sbjct: 95  GLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRN 154

Query: 121 FDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK--LANGEVPIPSAH 178
             G+ G+G+  I+         N +      +  F   L+RY T K  +  G+ P     
Sbjct: 155 TQGVAGLGHAPIS-------LPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQ 207

Query: 179 DPKELESR 186
              +    
Sbjct: 208 FQNQDIFH 215

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 2   PNVDIIL---GGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGK 58
           P+VD+++    G  + ++  D +++        CL    G   P        LG   + +
Sbjct: 314 PSVDLVMDKPNGPVWRISGEDLMVQAQ--PGVTCLGVMNGGMQP---RAEITLGARQLEE 368

Query: 59  FYTVFDMDNNQ 69
              VFD+  ++
Sbjct: 369 NLVVFDLARSR 379

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 8e-05
 Identities = 50/432 (11%), Positives = 119/432 (27%), Gaps = 144/432 (33%)

Query: 2   PNVDIIL----G-GKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWI-LGDVF 55
           P  ++++    G GK          + + +  S                   W+ L +  
Sbjct: 149 PAKNVLIDGVLGSGKT--------WVALDVCLSYKVQCKM-------DFKIFWLNLKNCN 193

Query: 56  --------IGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLS--------QDTLRIGDLT 99
                   + K     D +   ++     I+    ++   L         ++ L +    
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-N 252

Query: 100 IKNQVFGEAIKEPGF---------TFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLL 150
           ++N    +A     F         T      D +      +I++D            ++ 
Sbjct: 253 VQNA---KAWN--AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT---PDEVK 304

Query: 151 EKNVFGFYLNRYNTEKLANGEVPIPSAHD--P----------KELESRIENKYQLPEYDH 198
              +   YL+          ++P        P          ++  +  +N ++    D 
Sbjct: 305 S--LLLKYLD------CRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDK 354

Query: 199 VGDGCSASY-----TEMQQ----------------------WTNNIIEAINQGYAVTLEY 231
           +     +S       E ++                      W + I           +  
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS--------DVMV 406

Query: 232 PGVELKSLRILNKQGPTD-------QLETFWQLIRMDEVYVRDKELTEEYNIPYHIQHED 284
              +L    ++ KQ            LE     ++++  Y   + + + YNIP     +D
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLEL---KVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 285 F------KYEIT-----IENNSNETKTGIMRI------FLGAKNDIEGNELPLSAQRS-- 325
                  +Y  +     ++N  +  +  + R+      FL  K  I  +    +A  S  
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSIL 521

Query: 326 -LFIELDKFRVH 336
               +L  ++ +
Sbjct: 522 NTLQQLKFYKPY 533

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	336
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	100.0
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	100.0
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	100.0
1b5f_A	239	Protein (cardosin A); hydrolase, aspartic proteina	100.0
4aa9_A	320	Chymosin; hydrolase, aspartic peptidase, rennet; H	99.98
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	99.98
1qdm_A	478	Prophytepsin; aspartic proteinases, saposin-like d	99.97
3ixv_A	626	Hemocyanin AA6 chain; HC, phenolxoidase activity,	99.97
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	99.97
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	99.97
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	99.97
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	99.97
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	99.97
3hhs_A	694	Propo-P2, phenoloxidase subunit 2; alpha helix, be	99.97
3hhs_B	684	Propo-P1, phenoloxidase subunit 1; alpha helix, be	99.97
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	99.97
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	99.97
1lla_A	628	Hemocyanin (subunit type II); oxygen transport; 2.	99.97
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	99.97
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	99.97
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	99.97
1hc1_A	657	Arthropodan hemocyanin; oxygen transport; 3.20A {P	99.97
3gwj_A	674	Arylphorin; mono-glucosylated N-glycan, stability,	99.96
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	99.96
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	99.96
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	99.96
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	99.96
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	99.96
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	99.96
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	99.96
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	99.96
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	99.96
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	99.96
3vf3_A	402	Beta-secretase 1; structure-based drug design, hyd	99.95
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	99.95
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	99.95
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	99.95
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	99.89
3vla_A	413	EDGP; extracellular, inhibitor, plant protein; HET	99.88
1t6e_X	381	Xylanase inhibitor; two beta-barrel domain structu	99.85
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	99.68
1lya_A	97	Cathepsin D; lysosomal aspartic protease; HET: NAG	99.66
1b5f_B	87	Protein (cardosin A); hydrolase, aspartic proteina	98.54
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	97.66
1qdm_A	478	Prophytepsin; aspartic proteinases, saposin-like d	97.64
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	97.6
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	97.33
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	97.11
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	97.08
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	97.06
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	96.82
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	96.8
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	96.58
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	96.51
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	96.41
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	96.27
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	96.25
4aa9_A	320	Chymosin; hydrolase, aspartic peptidase, rennet; H	95.99
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	95.87
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	95.86
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	95.82
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	95.76
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	95.74
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	95.69
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	95.19
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	95.14
3vla_A	413	EDGP; extracellular, inhibitor, plant protein; HET	95.07
1t6e_X	381	Xylanase inhibitor; two beta-barrel domain structu	94.74
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	94.67
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	94.18
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	92.89
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	92.88
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	92.22
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	91.24
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	90.0
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	89.55
2i1a_A	148	DNA damage-inducible protein DDI1; acid protease f	88.72
3vf3_A	402	Beta-secretase 1; structure-based drug design, hyd	87.9

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A

Probab=100.00  E-value=2.4e-34  Score=275.31  Aligned_cols=200  Identities=24%  Similarity=0.392  Sum_probs=168.7

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQ   90 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~   90 (336)
                      ...|..++.+|+|+|..    .+.+||||+++||++.      |..|+.|+|++|+||+..++.|++.||+|+++|.+++
T Consensus        55 d~~Y~~~i~iGTPpQ~~----~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~  130 (370)
T 3psg_A           55 DTEYFGTIGIGTPAQDF----TVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGY  130 (370)
T ss_dssp             TCCEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEEEEE
T ss_pred             CCEEEEEEEEcCCCCEE----EEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECCcEEEEEeCCceEEEEEEE
Confidence            45799999999999864    7889999999999974      4568899999999999999999999999999999999


Q ss_pred             EEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCc
Q psy3214          91 DTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG  170 (336)
Q Consensus        91 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G  170 (336)
                      |+|+++++++++|.||++...++..|...++|||||||++.++..+..|++++|++||+|++++||+||++ +  ...+|
T Consensus       131 Dtv~ig~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~-~--~~~~G  207 (370)
T 3psg_A          131 DTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS-N--DDSGS  207 (370)
T ss_dssp             EEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC--------CE
T ss_pred             EEEeeCCcccCCeEEEEEEeecccccccCCccceeccCCccccccCCCCHHHHHHHCCCCCCCEEEEEEcc-C--CCCCe
Confidence            99999999999999999998877677888899999999999988888899999999999999999999999 4  34689


Q ss_pred             eEEecCCCCCcccccccceeEecCC-cc------c--------cCCC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         171 EVPIPSAHDPKELESRIENKYQLPE-YD------H--------VGDG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       171 ~l~f~GGiD~~~~~G~l~~~~~~~~-~~------~--------~~~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      +|+| ||+|+++|+|+++|++.... +|      .        +..+   ..++++++...+..+++++.+.
T Consensus       208 ~l~f-Gg~D~~~y~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~  278 (370)
T 3psg_A          208 VVLL-GGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSD  278 (370)
T ss_dssp             EEEE-TCCCGGGBSSCCEEEECSEETTEEEEECEEESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHH
T ss_pred             EEEE-EeeChHhcCCcceeecccccceeEEEEeEEEECCEEEecCCCceEEEcCCCCcEECCHHHHHHHHHH
Confidence            9999 99999999999999743321 11      1        1111   2336788888888888777765

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=276.65  Aligned_cols=202  Identities=29%  Similarity=0.550  Sum_probs=170.7

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc--------ccccceeeeecccCccCCCcEEEEEeCCceEEEE
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD--------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGY   87 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~--------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~   87 (336)
                      ....|..++.+|+|+|..    .+.+||||+++||++.        |..|+.|+|++|+||+..++.|+|.||+|+++|.
T Consensus        59 ~~~~Y~~~I~IGTP~Q~f----~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~  134 (383)
T 2x0b_A           59 MDTQYYGEIGIGTPPQTF----KVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGF  134 (383)
T ss_dssp             TTTEEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEE
T ss_pred             CCCEEEEEEEECCCCcEE----EEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCccEEEE
Confidence            456899999999999864    7889999999999974        3357899999999999999999999999999999


Q ss_pred             EeEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCC-
Q psy3214          88 LSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK-  166 (336)
Q Consensus        88 ~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~-  166 (336)
                      +++|+|+||+++++ |.||+++.+++..|...++|||||||++.++..+..|++++|++||+|++++||+||++ +... 
T Consensus       135 ~~~Dtv~ig~~~v~-~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~-~~~~~  212 (383)
T 2x0b_A          135 LSQDIITVGGITVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR-DSENS  212 (383)
T ss_dssp             EEEEEEEETTEEEE-EEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHTTTCCSSSEEEEEECC-SCC--
T ss_pred             EEeeEEEEcCceEE-EEEEEEEecCCcccccCCCceEeccCCCccccCCCCcHHHHHHhCCCCCCCEEEEEEcC-CCCcc
Confidence            99999999999999 99999999876667778899999999999987788899999999999999999999999 4322 


Q ss_pred             -CCCceEEecCCCCCcccccccceeEecC-Cccc--------------cCCC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         167 -LANGEVPIPSAHDPKELESRIENKYQLP-EYDH--------------VGDG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       167 -~~~G~l~f~GGiD~~~~~G~l~~~~~~~-~~~~--------------~~~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                       ..+|+|+| ||+|+++|+|+++|++... .+|.              +..+   ..++++++...+..+++++.+.
T Consensus       213 ~~~~G~l~f-Gg~d~~~y~G~l~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~  288 (383)
T 2x0b_A          213 QSLGGQIVL-GGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEA  288 (383)
T ss_dssp             --CCEEEEE-SSCCGGGEEEEEEEEEBSSTTSCEEEECEEEESSCCCBSTTCEEEEECTTCSSEEECHHHHHHHHHH
T ss_pred             cCCCcEEEE-CCcChHHcCCceEEEEcCCCceEEEEEeEEEeCCceEEcCCCcEEEEcCCCceEEcCHHHHHHHHHH
Confidence             14899999 9999999999999985432 1221              0111   2336788888888888777765

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}

Probab=100.00  E-value=2e-32  Score=260.14  Aligned_cols=202  Identities=27%  Similarity=0.480  Sum_probs=169.1

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQ   90 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~   90 (336)
                      ...|.+++.+|+|+|..    .+.+||||+++||++.      |..++.|+|++|+||+..++.|.+.||+|+++|.+++
T Consensus        22 ~~~Y~~~i~iGtP~Q~~----~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~   97 (351)
T 1tzs_A           22 DMEYFGTISIGSPPQNF----TVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGSLSGIIGA   97 (351)
T ss_dssp             SSCCCEEEEETTTTEEE----EEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCCSCEEEEESSSCEEEEEEEE
T ss_pred             CCEEEEEEEECCCCeEE----EEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEECCCEEEEEeCCCCeEEEEEE
Confidence            45799999999998864    7889999999999974      4467899999999999999999999999999999999


Q ss_pred             EEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCc
Q psy3214          91 DTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG  170 (336)
Q Consensus        91 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G  170 (336)
                      |+|+++++++++|.||++...++..|....+|||||||++.++..+..|++++|++||+|++++||+||++ +.....+|
T Consensus        98 D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~-~~~~~~~G  176 (351)
T 1tzs_A           98 DQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSS-NPEGGAGS  176 (351)
T ss_dssp             EEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGSGGGCCCHHHHHHHTTCCSSSEEEEECCC-CC--CTTC
T ss_pred             eEEEECCeEECCeEEEEEEeccccccccCCCceEEecCCccccccCCCcHHHHHHHCCCCCCCEEEEEEcC-CCCCCCCC
Confidence            99999999999999999998876667777889999999998887778899999999999999999999999 43333589


Q ss_pred             eEEecCCCCCcccccccceeEecC-Cccc--------------cCCC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         171 EVPIPSAHDPKELESRIENKYQLP-EYDH--------------VGDG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       171 ~l~f~GGiD~~~~~G~l~~~~~~~-~~~~--------------~~~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      +|+| ||+|+++|+|++.|++... .+|.              ...+   ..++++++.+.+..+++++.+.
T Consensus       177 ~l~f-Gg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~  247 (351)
T 1tzs_A          177 ELIF-GGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNA  247 (351)
T ss_dssp             EEEE-TSCCGGGBCSCCEEEECSEETTEEEEEEEEEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHH
T ss_pred             EEEE-CCCCHHHcCCceEEEecCCCceEEEEeCEEEECCceEEcCCCceEEeccCCcceeCCHHHHHHHHHH
Confidence            9999 9999999999999974332 1111              0111   2336778888888887777664

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2

Probab=100.00  E-value=1.4e-32  Score=247.81  Aligned_cols=168  Identities=30%  Similarity=0.540  Sum_probs=148.8

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-------ccccceeeeecccCccCCCcEEEEEeCCceEEEEE
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYL   88 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~   88 (336)
                      ....|.+++.+|+|.|.+    .+.+||||+++||++.       |..++.|+|++|+||+..++.+.+.|++|+++|.+
T Consensus        11 ~~~~Y~~~i~iGtP~q~~----~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~   86 (239)
T 1b5f_A           11 RDTSYFGEIGIGTPPQKF----TVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENGTFGAIIYGTGSITGFF   86 (239)
T ss_dssp             TTTEEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTCCSCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEEE
T ss_pred             CCCEEEEEEEECCCCeEE----EEEEeCCCcceEEEcCCCCCCcccCCCCCCCCccCCCeeeCCcEEEEEECCCcEEEEE
Confidence            346799999999998864    7889999999999963       33477899999999999999999999999999999


Q ss_pred             eEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCC
Q psy3214          89 SQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLA  168 (336)
Q Consensus        89 ~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~  168 (336)
                      ++|+|+++++++++|.||++...++..|....+|||||||++.++    .|++++|++|++|++++||+||++ +.+...
T Consensus        87 ~~D~v~~g~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s----~p~~~~l~~qg~i~~~~FS~~l~~-~~~~~~  161 (239)
T 1b5f_A           87 SQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSFQTIS----VPVWYNMLNQGLVKERRFSFWLNR-NVDEEE  161 (239)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEECHHHHTTCSCCEEEECSCCSSS----CCHHHHHHHTTCCSSSEEEEEECC-SCSSSC
T ss_pred             EEEEEEECCcEEccEEEEEEEeccCccccccCcceEEecCccccc----cHHHHHHHHCCCCCCCEEEEEEeC-CCCCCC
Confidence            999999999999999999999877555667788999999998776    688999999999999999999998 543456


Q ss_pred             CceEEecCCCCCcccccccceeEec
Q psy3214         169 NGEVPIPSAHDPKELESRIENKYQL  193 (336)
Q Consensus       169 ~G~l~f~GGiD~~~~~G~l~~~~~~  193 (336)
                      +|+|+| ||+|+++|.|++.|++..
T Consensus       162 ~G~l~f-Gg~d~~~~~g~l~~~p~~  185 (239)
T 1b5f_A          162 GGELVF-GGLDPNHFRGDHTYVPVT  185 (239)
T ss_dssp             CEEEEE-TSCCGGGEEEEEEEEEEE
T ss_pred             CeEEEE-CCcChhhccCceEEEEcc
Confidence            899999 999999999999997543

>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A

Probab=99.98  E-value=2.3e-32  Score=256.35  Aligned_cols=199  Identities=22%  Similarity=0.368  Sum_probs=168.5

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQ   90 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~   90 (336)
                      -..|.+++.+|+|+|..    .+.+||||+++||++.      |..++.|+|++|+||+..++.|.+.||+|+++|.+++
T Consensus        10 d~~Y~~~i~iGtP~Q~~----~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~~~~   85 (320)
T 4aa9_A           10 DSQYFGKIYIGTPPQEF----TVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGSMEGFLGY   85 (320)
T ss_dssp             CCCCEEEEEETTTTEEE----EEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCEEEEEEEECCCCeEE----EEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCCcEEEEEECCcEEEEEEEE
Confidence            45799999999999864    7889999999999974      4467899999999999999999999999999999999


Q ss_pred             EEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCc
Q psy3214          91 DTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG  170 (336)
Q Consensus        91 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G  170 (336)
                      |+|+++++++++|.||+++..++..|...+++||||||++.++.....|++++|++||+|++++||+||++ +   ..+|
T Consensus        86 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~Fs~~l~~-~---~~~G  161 (320)
T 4aa9_A           86 DTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDR-N---GQGS  161 (320)
T ss_dssp             EEEEETTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCS-S---SSCC
T ss_pred             EEEEECCEeecCeEEEEEEEcccccccccCcccEEecCcccccccCCCCHHHHHHhCCCCCCceEEEEeCC-C---CCCe
Confidence            99999999999999999998876567777889999999999888778899999999999999999999999 4   4689


Q ss_pred             eEEecCCCCCcccccccceeEecCC-ccc------c--------CCC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         171 EVPIPSAHDPKELESRIENKYQLPE-YDH------V--------GDG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       171 ~l~f~GGiD~~~~~G~l~~~~~~~~-~~~------~--------~~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      +|+| ||+|+++|+|++.|++.... +|.      .        ..+   ..++++.+...+..+++++.+.
T Consensus       162 ~l~f-Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~  232 (320)
T 4aa9_A          162 MLTL-GAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMA  232 (320)
T ss_dssp             EEEE-TCCCGGGEEEEEEEEECSSBTTBEEEECEEEETTEEEESTTCEEEEECTTCSSEEEEHHHHHHHHHH
T ss_pred             EEEE-cccCHHHccCceEEEEcccCCceEEEEeEEEECCEEeccCCCcEEEEECCCCcEECCHHHHHHHHHH
Confidence            9999 99999999999999754321 111      0        011   2335677777777777777654

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...

Probab=99.98  E-value=2.4e-32  Score=258.33  Aligned_cols=201  Identities=28%  Similarity=0.551  Sum_probs=167.6

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc--------ccccceeeeecccCccCCCcEEEEEeCCceEEEEE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD--------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYL   88 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~--------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~   88 (336)
                      ...|.+++.+|+|+|..    .+.+||||+++||++.        |..++.|+|++|+||+..++.|.+.||+|+++|.+
T Consensus        17 d~~Y~~~i~iGtP~q~~----~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~~   92 (341)
T 3k1w_A           17 DTQYYGEIGIGTPPQTF----KVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFL   92 (341)
T ss_dssp             TTEEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEE
T ss_pred             CCEEEEEEEEcCCCcEE----EEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECCcEEEEEE
Confidence            45699999999998864    7889999999999974        33577999999999999999999999999999999


Q ss_pred             eEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCC--CC
Q psy3214          89 SQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNT--EK  166 (336)
Q Consensus        89 ~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~--~~  166 (336)
                      ++|+|+++++++ +|.||++...++..|....++||||||++..+..+..|++++|++||+|++++||+||++ +.  ..
T Consensus        93 ~~D~v~ig~~~v-~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~-~~~~~~  170 (341)
T 3k1w_A           93 SQDIITVGGITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR-DSENSQ  170 (341)
T ss_dssp             EEEEEEETTEEE-EEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHHHTCBSSSEEEEEECC-CC----
T ss_pred             EEEEEEECCcee-eEEEEEEEEccccccccCCcceEEECCchhhcccCCCCHHHHHHHCCCCCCCEEEEEEeC-CCCcCC
Confidence            999999999999 999999998875446677889999999999887778899999999999999999999999 43  22


Q ss_pred             CCCceEEecCCCCCcccccccceeEecCC-ccc--------------cCCC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         167 LANGEVPIPSAHDPKELESRIENKYQLPE-YDH--------------VGDG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       167 ~~~G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~--------------~~~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      ..+|+|+| ||+|+++|+|+++|++.... +|.              ...+   ..++++.+.+.+..+++++.+.
T Consensus       171 ~~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~  245 (341)
T 3k1w_A          171 SLGGQIVL-GGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEA  245 (341)
T ss_dssp             -CCEEEEE-SSCCGGGEEEEEEEEECSSTTSCEEEECCEEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHH
T ss_pred             CCCCEEEE-CccChHHccCceEEEecCCCCEEEEEEeEEEECCEEeecCCCCEEEEECCCChhcCCHHHHHHHHHH
Confidence            45899999 99999999999999754322 111              0011   2346778888888888777765

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2

Probab=99.97  E-value=5.3e-32  Score=266.90  Aligned_cols=202  Identities=32%  Similarity=0.569  Sum_probs=168.4

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEe
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLS   89 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~   89 (336)
                      ...|.+++.+|+|+|..    .+.+||||+++||++.       |..|+.|+|++|+||+..++.|+|.||+|+++|.++
T Consensus        51 ~~~Y~~~i~IGTP~Q~~----~v~~DTGSs~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~  126 (478)
T 1qdm_A           51 NAQYFGEIGVGTPPQKF----TVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGSIAGYFS  126 (478)
T ss_dssp             GCCEEEEEEETTTTEEE----EEEEETTCCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEEEEEEEE
T ss_pred             CCEEEEEEEECCCCeEE----EEEEcCCCcceEEecCCCCCCccccCCCCCCcccCCCeeeCCcEEEEEcCCCCeEEEEE
Confidence            35799999999998864    7889999999999963       446789999999999999999999999999999999


Q ss_pred             EEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCC
Q psy3214          90 QDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLAN  169 (336)
Q Consensus        90 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~  169 (336)
                      +|+|+||++++++|.||+++..++..|...++|||||||++.++..+..|++++|++||+|++++||+||++ +.....+
T Consensus       127 ~Dtv~ig~~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~-~~~~~~~  205 (478)
T 1qdm_A          127 EDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNR-HVDEGEG  205 (478)
T ss_dssp             EEEEEETTEEEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGGCCCHHHHHTTTTCCSSSEEEEECCC-C-----C
T ss_pred             EEEEEECCeEECCEEEEEEEecCCcccccccccceecccccccccCCCCcHHHHHHHCCCCCCCEEEEEeec-CCCCCCC
Confidence            999999999999999999998876667778899999999999887777899999999999999999999998 5434568


Q ss_pred             ceEEecCCCCCcccccccceeEecC-Cccc---------------cCCC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         170 GEVPIPSAHDPKELESRIENKYQLP-EYDH---------------VGDG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       170 G~l~f~GGiD~~~~~G~l~~~~~~~-~~~~---------------~~~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      |+|+| ||+|+++|+|+++|++... .+|.               +..+   ..++++++.+.+..+++++.+.
T Consensus       206 G~l~f-Gg~d~~~~~G~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~  278 (478)
T 1qdm_A          206 GEIIF-GGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEK  278 (478)
T ss_dssp             EEEEE-TCCCTTSEEEEEEEEEEEEETTEEEEECCEEETTEECSTTTTCEEEEECSSCCSEEECHHHHHHHHHH
T ss_pred             eEEEe-CCcCHhhcCCCceEEeccCCCeEEEEEeEEEECCEEEeecCCCceEEEcCCCCceeCCHHHHHHHHHH
Confidence            99999 9999999999999974321 1111               0111   2347788888888888877654

>3ixv_A Hemocyanin AA6 chain; HC, phenolxoidase activity, tyrosinase (TY), catecholoxidase (CO), enzyme, SDS, cryo-EM, single particle analysis; 6.80A {Androctonus australis} PDB: 3ixw_A

Probab=99.97  E-value=1.5e-32  Score=273.82  Aligned_cols=134  Identities=30%  Similarity=0.459  Sum_probs=118.0

Q ss_pred             cCCC-ccccchhhhhhhHHHHHHHhcc---ce-eeecCCCeEEeEEEEeccCCCCCcceeeeeeeecccccccccccccc
Q psy3214         199 VGDG-CSASYTEMQQWTNNIIEAINQG---YA-VTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEE  273 (336)
Q Consensus       199 ~~~~-~~~s~t~l~~w~~~i~~~i~~g---~~-~~L~~pgv~i~~v~v~~~~gp~~~l~T~~~~~~~dl~~~~~~~~~~~  273 (336)
                      ..++ ++|.|++|++.++++++.+++.   |+ .+|.+|||+|++|+|....  +|+|.|||+.+++|++|+.+.  ..+
T Consensus       348 ~~TalRDP~FYrlhk~Id~~f~~yK~~LppYt~~eL~fpGV~I~~V~V~~~~--~n~L~Tyf~~~d~dlsn~l~f--~~~  423 (626)
T 3ixv_A          348 TSTSLRDPIFYRWHRFIDNIFQEHKKSFHPYTKEELSFPGVEVVGVSINSKT--ANVITTLIKESLLELSHGINF--GTD  423 (626)
T ss_dssp             TTTGGGSTHHHHHHHHHHHHHHHHHHHSCCCCHHHHCCTTEEEEEEEEESSS--TTEEEEEEEEEEEECTTTSCC--TTC
T ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHhCCCCcHhhcCCCCeEEEEEEEecCC--CCeeeecceeeEEeeeccccc--CCC
Confidence            4444 8999999999999999888875   55 8899999999999996433  589999999999999976543  223


Q ss_pred             ccc---ccccCCCCcEEEEEEecCCCceeeEEEEEEEceecCCCCCcccccccccceEEeeeeeeC
Q psy3214         274 YNI---PYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH  336 (336)
Q Consensus       274 ~~~---~~~L~h~pF~y~i~v~n~s~~~~~~~vrifl~Pk~d~~g~~~~~~~~r~~~ielD~f~~~  336 (336)
                      +.+   ++|||||||+|+|+|+|+|+++++|+|||||||||||+|++|++++||++|||||||+++
T Consensus       424 ~~v~ar~~rLnHkPF~y~i~V~n~s~~~~~~~VRIFLgPK~D~~G~~~~l~e~R~~fiElDkF~~~  489 (626)
T 3ixv_A          424 QSVKVKYHHLDHEPFTYNIVVENNSGAEKHSTVRIFLAPKYDELNNKLEPDEQRRLFIELDKFFYT  489 (626)
T ss_dssp             SCEEEEEEEEEECCCEEEEEEEECSSSCEEEEEEEEEEESBCSSSBCCCHHHHHHHCEEEEEEEEE
T ss_pred             cceEEEEeccCCCCeEEEEEEEeCCCCceeEEEEEEeCccccCCCCCCCHHHhhhhheEeeEEEEE
Confidence            332   799999999999999999999999999999999999999999999999999999999974

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A

Probab=99.97  E-value=8.6e-32  Score=253.01  Aligned_cols=200  Identities=23%  Similarity=0.358  Sum_probs=166.8

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-c-----cccceeeeecccCccCCCcEEEEEeCCceEEEEEe
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-V-----FIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLS   89 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c-----~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~   89 (336)
                      ....|.+++.+|+|+|..    .+.+||||+++||++. |     ..++.|+|++|+||+..++.|.+.||+|+++|.++
T Consensus        12 ~~~~Y~~~i~iGtP~q~~----~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~   87 (323)
T 3cms_A           12 LDSQYFGKIYLGTPPQEF----TVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILG   87 (323)
T ss_dssp             TTTEEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEE
T ss_pred             cCCEEEEEEEECCCCeEE----EEEEeCCccceEEcCCCCCcccccCCCCCCCccCCCeEECCcEEEEEeCCCCeEEEEE
Confidence            456799999999998864    7889999999999974 3     35779999999999999999999999999999999


Q ss_pred             EEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCC
Q psy3214          90 QDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLAN  169 (336)
Q Consensus        90 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~  169 (336)
                      +|+|+++++++++|.||++...++..|.....+||||||++.++..+..|++++|++|++|++++||+||++ +.   ..
T Consensus        88 ~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~q~~i~~~~FS~~l~~-~~---~~  163 (323)
T 3cms_A           88 YDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDR-NG---QE  163 (323)
T ss_dssp             EEEEEETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCT-TS---SC
T ss_pred             EEEEEECCeEEeccEEEEEEecccccccccCCceEEecCcchhhccCCCCHHHHHHHCCCCCCCEEEEEECC-CC---CC
Confidence            999999999999999999998876556667889999999999887788899999999999999999999998 42   23


Q ss_pred             ceEEecCCCCCcccccccceeEecCC-cccc--------------CCC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         170 GEVPIPSAHDPKELESRIENKYQLPE-YDHV--------------GDG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       170 G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~~--------------~~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      |+|+| ||+|+++|+|++.|++.... ++.+              ..+   ..++++++.+.+..+++++.+.
T Consensus       164 G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~  235 (323)
T 3cms_A          164 SMLTL-GAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQA  235 (323)
T ss_dssp             EEEEE-SCCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHH
T ss_pred             EEEEE-CCCChhhccCceEEEECccCCeEEEEEeeEEECCEEeecCCCcEEEEecCCccEeCCHHHHHHHHHH
Confidence            99999 99999999999999754421 1110              011   2335667777777777666654

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2

Probab=99.97  E-value=6.6e-32  Score=253.85  Aligned_cols=170  Identities=29%  Similarity=0.442  Sum_probs=152.7

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEe
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLS   89 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~   89 (336)
                      ....|.+++.+|+|+|..    .+.+||||+++||++.      |..++.|+|++|+||+..++.|++.||+|+++|.++
T Consensus        10 ~~~~Y~~~i~iGtP~q~~----~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~   85 (324)
T 1am5_A           10 ADTEYYGVISIGTPPESF----KVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETGKTVDLTYGTGGMRGILG   85 (324)
T ss_dssp             TTTEEEEEEEETTTTEEE----EEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEEEE
T ss_pred             CCCEEEEEEEECCCCeEE----EEEEeCCCcceEEecCCCCcccccCCCcCCCccCCCeEeCCcEEEEEECCCCeEEEEE
Confidence            456899999999998854    7889999999999974      345789999999999999999999999999999999


Q ss_pred             EEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCC
Q psy3214          90 QDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLAN  169 (336)
Q Consensus        90 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~  169 (336)
                      +|+|+++++++++|.||++...++..|....+|||||||++.++..+..|++++|++||+|++++||+||++ +.  ..+
T Consensus        86 ~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~-~~--~~~  162 (324)
T 1am5_A           86 QDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSG-GG--ANG  162 (324)
T ss_dssp             EEEEESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEECCS-TT--CSC
T ss_pred             ECceeECCcEEcccEEEEEEecccccccCCCCceEEecCCccccccCCCchHHhHHhcCCCCCCEEEEEecC-CC--CCC
Confidence            999999999999999999998876566677889999999998887777899999999999999999999999 42  358


Q ss_pred             ceEEecCCCCCcccccccceeEec
Q psy3214         170 GEVPIPSAHDPKELESRIENKYQL  193 (336)
Q Consensus       170 G~l~f~GGiD~~~~~G~l~~~~~~  193 (336)
                      |+|+| ||+|+++|+|++.|++..
T Consensus       163 G~l~f-Gg~d~~~~~g~l~~~p~~  185 (324)
T 1am5_A          163 SEVML-GGVDNSHYTGSIHWIPVT  185 (324)
T ss_dssp             EEEEE-SSCCGGGBCSCCEEEEEE
T ss_pred             cEEEE-CccCHHHcCCceEEEecC
Confidence            99999 999999999999997543

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A

Probab=99.97  E-value=7e-32  Score=254.16  Aligned_cols=170  Identities=25%  Similarity=0.457  Sum_probs=152.4

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQ   90 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~   90 (336)
                      ...|.+++.+|+|+|..    .+.+||||+++||++.      |..++.|+|++|+||+..++.|.+.||+|+++|.+++
T Consensus        11 ~~~Y~~~i~iGtP~q~~----~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~G~~~~   86 (329)
T 1htr_B           11 DAAYFGEISIGTPPQNF----LVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSLTGFFGY   86 (329)
T ss_dssp             TCCEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCEEEEEEEECCCCcEE----EEEEcCCCccEEEecCCCCCcccCCCCcCCCccCCCeEECCcEEEEEeCCCCeEEEEEe
Confidence            45799999999998864    7889999999999974      3357899999999999999999999999999999999


Q ss_pred             EEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCc
Q psy3214          91 DTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG  170 (336)
Q Consensus        91 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G  170 (336)
                      |+|+++++++++|.||++...++..|....++||||||++.++..+..|++++|++||+|++++||+||++ +. ...+|
T Consensus        87 D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~L~~-~~-~~~~G  164 (329)
T 1htr_B           87 DTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSN-QQ-GSSGG  164 (329)
T ss_dssp             EEEEETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCTTCCSHHHHHHHTTCSSSSEEEEEECS-SC-SSEEE
T ss_pred             eeEEEcceEECceEEEEEEEccccccccCCCceEEecCCCcccccCCCCHHHHHHhcCCCCCCEEEEEEcC-CC-CCCCc
Confidence            99999999999999999998876567677889999999999887778899999999999999999999999 42 12489


Q ss_pred             eEEecCCCCCcccccccceeEec
Q psy3214         171 EVPIPSAHDPKELESRIENKYQL  193 (336)
Q Consensus       171 ~l~f~GGiD~~~~~G~l~~~~~~  193 (336)
                      +|+| ||+|+++|+|++.|++..
T Consensus       165 ~l~f-Gg~d~~~~~g~l~~~p~~  186 (329)
T 1htr_B          165 AVVF-GGVDSSLYTGQIYWAPVT  186 (329)
T ss_dssp             EEEE-SSCCGGGEEEEEEEEEBC
T ss_pred             EEEE-cccCHHHcCCceEEEECC
Confidence            9999 999999999999998654

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*

Probab=99.97  E-value=5.1e-32  Score=264.99  Aligned_cols=196  Identities=16%  Similarity=0.302  Sum_probs=168.2

Q ss_pred             cCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeEE
Q psy3214          18 TDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQD   91 (336)
Q Consensus        18 ~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D   91 (336)
                      ..|.+++.+|+|+|..    .+.+||||+++||++.      |..++.|+|++|+||+..++.|.+.||+|+++|.++.|
T Consensus       137 ~~Y~~~I~IGTPpQ~~----~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdGs~~G~~~~D  212 (451)
T 3qvc_A          137 VLSFGEAKLGDNGQKF----NFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGTISGIFSKD  212 (451)
T ss_dssp             EEEEEEEEETTTTEEE----EEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEECSSEEEEEEEEEE
T ss_pred             CEEEEEEEECCCCcEE----EEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCCCEEEEEECCCEEEEEEEEE
Confidence            4699999999999864    7889999999999973      44678999999999999999999999999999999999


Q ss_pred             EEEECCeEEeceEEEEEEe----eCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCC
Q psy3214          92 TLRIGDLTIKNQVFGEAIK----EPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKL  167 (336)
Q Consensus        92 ~v~ig~~~v~~~~fg~~~~----~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~  167 (336)
                      +|++|+++++ |.||+++.    .++  |...++|||||||++.++..+..|++++|++||+|++++||+||++ .  ..
T Consensus       213 tv~igg~~v~-~~Fg~a~~t~~~~~~--f~~~~~dGILGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~-~--~~  286 (451)
T 3qvc_A          213 LVTIGKLSVP-YKFIEMTEIVGFEPF--YSESDVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPP-E--NK  286 (451)
T ss_dssp             EEEETTEEEE-EEEEEEEEEEECTTH--HHHSCCCEEEECSSBCSSSSCCCCHHHHHHHTTSSSSSEEEEECCT-T--CT
T ss_pred             EEEECCEEEE-EEEEEEEeccccCCC--ccCCCCCEEEecCCCcccccCCCCHHHHHHHcCCCCCCEEEEEEcC-C--CC
Confidence            9999999999 99999998    654  6667889999999999888788899999999999999999999999 3  34


Q ss_pred             CCceEEecCCCCCcccccccceeEecCC-cccc-------------CCCccccchhhhhhhHHHHHHHhcc
Q psy3214         168 ANGEVPIPSAHDPKELESRIENKYQLPE-YDHV-------------GDGCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       168 ~~G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~~-------------~~~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      .+|+|+| ||+|+++|+|++.|++.... +|..             .....++++++...+..+++++.+.
T Consensus       287 ~~G~l~f-GgiD~s~y~G~l~~~pv~~~~~w~v~l~I~Vgg~~~~~~~aiiDSGTt~i~lP~~~~~~i~~~  356 (451)
T 3qvc_A          287 NKGYLTI-GGIEERFFDGPLNYEKLNHDLMWQVDLDVHFGNVSSKKANVILDSATSVITVPTEFFNQFVES  356 (451)
T ss_dssp             TEEEEEE-SSCCGGGEEEEEEEEECSSTTSSEEEEEEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHTT
T ss_pred             CCCEEEE-CCcchhhcCCceEEEEcccCCeeEEEEEEEECCccCCCceEEEeCCCccccCCHHHHHHHHHH
Confidence            6899999 99999999999999865432 1210             0123447788888888888888775

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*

Probab=99.97  E-value=7e-32  Score=254.17  Aligned_cols=202  Identities=36%  Similarity=0.623  Sum_probs=167.2

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQ   90 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~   90 (336)
                      ...|.+++.+|+|+|..    .+.+||||+++||++.      |..++.|+|++|+||+..++.|.+.||+|+++|.+++
T Consensus        12 ~~~Y~~~i~iGtP~q~~----~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~   87 (329)
T 1dpj_A           12 NAQYYTDITLGTPPQNF----KVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTGSLEGYISQ   87 (329)
T ss_dssp             TTEEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCEEEEEEEECCCCcEE----EEEEeCCCcCeEEecCCCCCcccCCcCcCCcccCcCeEECCcEEEEEECCceEEEEEEE
Confidence            46799999999998854    7889999999999974      3357899999999999999999999999999999999


Q ss_pred             EEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCC-CCCCC
Q psy3214          91 DTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNT-EKLAN  169 (336)
Q Consensus        91 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~-~~~~~  169 (336)
                      |+|+++++++++|.||+++..++..|....+|||||||++.++..+..|++++|++||+|++++||+||++ .. ....+
T Consensus        88 D~v~ig~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~-~~~~~~~~  166 (329)
T 1dpj_A           88 DTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGD-TSKDTENG  166 (329)
T ss_dssp             EEEEETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCCSSSEEEEEECC-GGGTCSSS
T ss_pred             EEEEECCeEECCeEEEEEEecCccccccCCcceEEEeCCchhhccCCCCHHHHHHhcCCcCCCEEEEEecC-CCCCCCCC
Confidence            99999999999999999998775456667789999999998877777899999999999999999999988 32 12357


Q ss_pred             ceEEecCCCCCcccccccceeEecCC-cccc-------------CCC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         170 GEVPIPSAHDPKELESRIENKYQLPE-YDHV-------------GDG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       170 G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~~-------------~~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      |+|+| ||+|+++|+|++.|++.... +|.+             ..+   ..++++++.+.+..+++++.+.
T Consensus       167 G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~  237 (329)
T 1dpj_A          167 GEATF-GGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAE  237 (329)
T ss_dssp             EEEEE-SSCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHH
T ss_pred             cEEEE-cCCChhhcCCceEEEEcCCCceEEEEeeeEEECCeEecCCCccEEeeCCCCcEECCHHHHHHHHHH
Confidence            99999 99999999999999754321 1210             011   2336677777777777777654

>3hhs_A Propo-P2, phenoloxidase subunit 2; alpha helix, beta strand, melanin biosynthesis, metal-bindin monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta}

Probab=99.97  E-value=3.3e-32  Score=273.72  Aligned_cols=138  Identities=26%  Similarity=0.460  Sum_probs=119.3

Q ss_pred             ccCCC-ccccchhhhhhhHHHHHHHhcc------ce-eeecCCCeEEeEEEEeccCCCCCcceeeeeeeecccccccccc
Q psy3214         198 HVGDG-CSASYTEMQQWTNNIIEAINQG------YA-VTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKE  269 (336)
Q Consensus       198 ~~~~~-~~~s~t~l~~w~~~i~~~i~~g------~~-~~L~~pgv~i~~v~v~~~~gp~~~l~T~~~~~~~dl~~~~~~~  269 (336)
                      +..++ ++|.|++|+++++++++.+++.      |+ .+|.+|||+|++|+|....+++|+|.|||+.+++|++|+.+..
T Consensus       393 ~~~TalRDP~FYrlhk~Id~~f~~yK~~~~~LppYt~~eL~fpGV~I~~V~V~~~~~~~d~L~Tyf~~~d~dlsn~l~f~  472 (694)
T 3hhs_A          393 DEATTMRDPFFYRVHAWVDDIFQSFKEAPHNVRPYSRSQLENPGVQVTSVAVESAGGQQNVLNTFWMQSDVNLSKGLDFS  472 (694)
T ss_dssp             STTTGGGSHHHHHHHHHHHHHHHHHHTCTTTCCCCCHHHHCCTTEEEEEEEEEETTSCTTEEEEEEEC-CEECGGGSTTC
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHHHhhcCCCCCCchhhccCCCeEEEEEEEeccCCCCCeeEeccccceeehhcccccC
Confidence            34444 8999999999999999999987      66 7899999999999998777788999999999999999865432


Q ss_pred             cccccc-cccccCCCCcEEEEEEecCCCceeeEEEEEEEceecCCCCCcccccccccceEEeeeeeeC
Q psy3214         270 LTEEYN-IPYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH  336 (336)
Q Consensus       270 ~~~~~~-~~~~L~h~pF~y~i~v~n~s~~~~~~~vrifl~Pk~d~~g~~~~~~~~r~~~ielD~f~~~  336 (336)
                      ....+. +++|||||||+|+|+|+|+ +++++|+|||||||||||+|++|+++|||++|||||||+++
T Consensus       473 ~~~~v~ar~~rLnHkPF~y~i~V~s~-~~~~~a~VRIFLgPKyDe~G~~~~l~e~R~~fiElDkF~~~  539 (694)
T 3hhs_A          473 DRGPVYARFTHLNHRPFRYVIKANNT-ASARRTTVRIFIAPKTDERNLPWALSDQRKMFIEMDRFVVP  539 (694)
T ss_dssp             CCSCCEEECCEEEECCEEEEEEEEEC-SSCCEEEEEEEEEESBCTTSCBCCHHHHTTTCEEEEEEEEE
T ss_pred             CCcceEEEEeccCCCCeEEEEEEEeC-CCceEEEEEEEeCccccCCCCCCCHHHhhhheEEeEEEEEE
Confidence            111111 2799999999999999765 89999999999999999999999999999999999999974

>3hhs_B Propo-P1, phenoloxidase subunit 1; alpha helix, beta strand, melanin biosynthesis, metal-bindin monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta}

Probab=99.97  E-value=6.1e-32  Score=271.83  Aligned_cols=135  Identities=26%  Similarity=0.465  Sum_probs=117.6

Q ss_pred             ccCCC-ccccchhhhhhhHHHHHHHhcc---ce-eeecCCCeEEeEEEEeccCCCCCcceeeeeeeeccccccccccccc
Q psy3214         198 HVGDG-CSASYTEMQQWTNNIIEAINQG---YA-VTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTE  272 (336)
Q Consensus       198 ~~~~~-~~~s~t~l~~w~~~i~~~i~~g---~~-~~L~~pgv~i~~v~v~~~~gp~~~l~T~~~~~~~dl~~~~~~~~~~  272 (336)
                      +..++ ++|.|++|+++++++++.+++.   |+ .+|.+|||+|++|+|.  .+++|+|.|||+.+++|++|+.+..  .
T Consensus       391 ~~~TalRDP~FYrlhk~Id~~f~~yK~~LppYt~~eL~fpGV~I~~V~V~--~~~~n~L~Tyf~~~d~dlsn~l~~~--~  466 (684)
T 3hhs_B          391 DSATAMRDPFFYRWHRFVDDVFNIYKEKLTPYTNERLDFPGVRVSSVGIE--GARPNTLRTLWQQSTVELGRGLDFT--P  466 (684)
T ss_dssp             STTTGGGSHHHHHHHHHHHHHHHHHHTTSCCCCHHHHCCTTEEEEEEEEC--C-CTTEEEEEEEEEEEECTTTSTTS--C
T ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHhhCCCCcHhhccCCCeEEEEEEec--CCCCCeeEeccccceeeeecccccC--C
Confidence            34444 8999999999999999999876   55 7899999999999992  2466899999999999999865432  2


Q ss_pred             ccc---cccccCCCCcEEEEEEecCCCceeeEEEEEEEceecCCCCCcccccccccceEEeeeeeeC
Q psy3214         273 EYN---IPYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH  336 (336)
Q Consensus       273 ~~~---~~~~L~h~pF~y~i~v~n~s~~~~~~~vrifl~Pk~d~~g~~~~~~~~r~~~ielD~f~~~  336 (336)
                      +..   +++|||||||+|+|+|+|+|+++++|+|||||||||||+|++|+++|||++|||||||+++
T Consensus       467 ~~~v~ar~~rLnHkPF~y~i~V~s~s~~~~~a~VRIFLgPKyD~~G~~~~l~e~R~~fiElDkF~~~  533 (684)
T 3hhs_B          467 RGSVLARFTHLQHDEFQYVIEVNNTTGGNLMGTVRIFMAPKVDDNGQPMSFNKQRRLMIELDKFSQA  533 (684)
T ss_dssp             SSCCEEEEEEEEECCCEEEEEEEECSSSCEEEEEEEEEEESBCTTSCBCCHHHHGGGCEEEEEEEEE
T ss_pred             CcceEEEEeccCCCCeEEEEEEEeCCCCceEEEEEEEecccccCCCCCCCHHHhhhhhEEeeEEEEE
Confidence            222   2799999999999999998899999999999999999999999999999999999999974

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...

Probab=99.97  E-value=2.6e-31  Score=259.89  Aligned_cols=200  Identities=21%  Similarity=0.378  Sum_probs=168.8

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEe
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLS   89 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~   89 (336)
                      ....|.+++.+|+|+|..    .+.+||||+++||++.      |..++.|+|++|+||+..++.|++.||+|+++|.++
T Consensus       136 ~~~~Y~~~I~IGTP~Q~~----~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdGs~~G~~~  211 (453)
T 2bju_A          136 QNIMFYGDAEVGDNQQPF----TFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFS  211 (453)
T ss_dssp             TTTEEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSEEEEEEE
T ss_pred             CCCEEEEEEEECCCCeEE----EEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECCcEEEEEcCCCCeEEEEE
Confidence            456799999999999864    7889999999999974      446789999999999999999999999999999999


Q ss_pred             EEEEEECCeEEeceEEEEEEeeC--CcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCC
Q psy3214          90 QDTLRIGDLTIKNQVFGEAIKEP--GFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKL  167 (336)
Q Consensus        90 ~D~v~ig~~~v~~~~fg~~~~~~--~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~  167 (336)
                      +|+|++|+++++ |.||+++..+  +..|....+|||||||++.++..+..|++++|++||+|++++||+||++ +  ..
T Consensus       212 ~Dtv~ig~~~v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~-~--~~  287 (453)
T 2bju_A          212 KDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV-H--DK  287 (453)
T ss_dssp             EEEEEETTEEEE-EEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCCCHHHHHHHTTSSSSCEEEEECCB-T--TT
T ss_pred             EEEEEEeCcEEE-EEEEEEEEecccCccccccCCceeEeccCCcccccCCCcHHHHHHHCCCCCCCEEEEEeCC-C--CC
Confidence            999999999999 9999999887  5556667889999999999887778899999999999999999999999 4  34


Q ss_pred             CCceEEecCCCCCcccccccceeEecC-Ccccc-------------CCCccccchhhhhhhHHHHHHHhcc
Q psy3214         168 ANGEVPIPSAHDPKELESRIENKYQLP-EYDHV-------------GDGCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       168 ~~G~l~f~GGiD~~~~~G~l~~~~~~~-~~~~~-------------~~~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      .+|+|+| ||+|+++|+|++.|++... .+|.+             .....++++++.+.+..+++++.+.
T Consensus       288 ~~G~l~f-Gg~D~~~y~G~l~~~pv~~~~~w~V~l~I~Vgg~~~~~~~aIiDSGTsl~~lP~~~~~~l~~~  357 (453)
T 2bju_A          288 HTGFLTI-GGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQN  357 (453)
T ss_dssp             BCEEEEE-SSCCGGGEEEEEEEEEEEEETTEEEEEEEEETTEEEEEEEEEECTTCCSEEECHHHHHHHTTT
T ss_pred             CCeEEEE-CCCCHHHcCCceEEEecCCCceEEEEEEEEECcEEeccccEEEcCCCCeEecCHHHHHHHHHH
Confidence            6899999 9999999999999975432 11210             0113346677777777777777665

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*

Probab=99.97  E-value=2.5e-31  Score=253.51  Aligned_cols=169  Identities=21%  Similarity=0.333  Sum_probs=150.2

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-------ccccceeeeecccCccCCCcEEEEEeCCceEEEEE
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYL   88 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~   88 (336)
                      ....|.+++.+|+|+|.+    .+.+||||+++||++.       |..++.|+|++|+||+..++.|.+.||+|+++|.+
T Consensus        16 ~~~~Y~~~i~iGtP~q~~----~v~~DTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~   91 (361)
T 1mpp_A           16 DLEEYAIPVSIGTPGQDF----YLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTGGANGIY   91 (361)
T ss_dssp             TTTEEEEEEEETTTTEEE----EEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSSCEEEEEE
T ss_pred             CCCEEEEEEEECCCCcEE----EEEEcCCCCCeEECCCCCCCCccCCCCCcCCCccCCceEecCCeEEEEECCceEEEEE
Confidence            346799999999998864    7889999999999964       44577899999999999999999999999999999


Q ss_pred             eEEEEEECCeEEeceEEEEEEeeCC-----cccccccccccccCcccccccCC------CCchHHHHHHhcccCCCeEEE
Q psy3214          89 SQDTLRIGDLTIKNQVFGEAIKEPG-----FTFVAAKFDGILGMGYDNIAVDG------VEPPFYNIIQQKLLEKNVFGF  157 (336)
Q Consensus        89 ~~D~v~ig~~~v~~~~fg~~~~~~~-----~~~~~~~~dGIlGLg~~~~s~~~------~~~~~~~l~~q~~i~~~~Fs~  157 (336)
                      ++|+|+++++++++|.||+++..++     ..|....++||||||++.++...      ..+++++|++||+|++++||+
T Consensus        92 ~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~  171 (361)
T 1mpp_A           92 FRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSV  171 (361)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEE
T ss_pred             EEEEEEECCEEEeceEEEEEEeccCccccccccccCCCCCEEEeCCcccccccccccccCCCHHHHHHHcCCCCCcEEEE
Confidence            9999999999999999999998875     45666788999999998876533      789999999999999999999


Q ss_pred             EeecCCCCCCCCceEEecCCCCCcccccccceeEec
Q psy3214         158 YLNRYNTEKLANGEVPIPSAHDPKELESRIENKYQL  193 (336)
Q Consensus       158 ~l~~~~~~~~~~G~l~f~GGiD~~~~~G~l~~~~~~  193 (336)
                      ||++ +   ..+|+|+| ||+|+++|.|++.|++..
T Consensus       172 ~l~~-~---~~~G~l~f-Gg~d~~~~~g~l~~~p~~  202 (361)
T 1mpp_A          172 YMNT-N---DGGGQVVF-GGVNNTLLGGDIQYTDVL  202 (361)
T ss_dssp             ECCC-S---SSEEEEEE-SSCCGGGBSSCCEEEECE
T ss_pred             EecC-C---CCCcEEEE-ecCChhhcCCceEEEEcc
Confidence            9999 4   45899999 999999999999997543

>1lla_A Hemocyanin (subunit type II); oxygen transport; 2.18A {Limulus polyphemus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1nol_A 1ll1_A 1oxy_A

Probab=99.97  E-value=1e-31  Score=268.68  Aligned_cols=136  Identities=24%  Similarity=0.434  Sum_probs=117.0

Q ss_pred             cCCC-ccccchhhhhhhHHHHHHHhcc---ce-eeecCCCeEEeEEEEeccCCCCCcceeeeeeeecccccccccccccc
Q psy3214         199 VGDG-CSASYTEMQQWTNNIIEAINQG---YA-VTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEE  273 (336)
Q Consensus       199 ~~~~-~~~s~t~l~~w~~~i~~~i~~g---~~-~~L~~pgv~i~~v~v~~~~gp~~~l~T~~~~~~~dl~~~~~~~~~~~  273 (336)
                      ..++ ++|.|++|++.++++++.+++.   |+ .+|.+|||+|++|+|...+  +|+|.|||+.+++|++|+.+......
T Consensus       351 ~~TalRDP~FYr~hk~Id~~f~~yK~~LppYt~~eL~fpGV~I~~V~V~~~~--~n~L~Tyfe~~d~dlsn~l~~~~~~~  428 (628)
T 1lla_A          351 TSTSLRDPIFYNWHRFIDNIFHEYKNTLKPYDHDVLNFPDIQVQDVTLHARV--DNVVHTFMREQELELKHGINPGNARS  428 (628)
T ss_dssp             TTTGGGSHHHHHHHHHHHHHHHHHHTTSCCCCHHHHCCTTEEEEEEEEESSS--TTEEEEEEEEEEEECTTTSCCTTCSC
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHhCCCCccccccCCCeEEEEEEEecCC--CCcceeccccccchhhhccccCCCcc
Confidence            3444 8999999999999999999865   55 7899999999999995333  58999999999999998754322111


Q ss_pred             cc-cccccCCCCcEEEEEEecCCCceeeEEEEEEEceecCCCCCcccccccccceEEeeeeeeC
Q psy3214         274 YN-IPYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH  336 (336)
Q Consensus       274 ~~-~~~~L~h~pF~y~i~v~n~s~~~~~~~vrifl~Pk~d~~g~~~~~~~~r~~~ielD~f~~~  336 (336)
                      +. +++|||||||+|+|+|+|+++++++|+||||||||||++|++++++|||++|||||||+++
T Consensus       429 v~ar~~rLnHkPF~y~i~V~s~~~~~~~~~VRIFLgPk~D~~G~~~~l~e~R~~fiElD~F~~~  492 (628)
T 1lla_A          429 IKARYYHLDHEPFSYAVNVQNNSASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDKFKTD  492 (628)
T ss_dssp             EEEEEEEEEECCCEEEEEEEECSSSCEEEEEEEEEEESBCTTSCBCCHHHHHHHCEEEEEEEEE
T ss_pred             eEEEEeccCCCCeEEEEEEEeCCCCceeEEEEEEeCcccccCCCCCCHHHHhhhheeeeeEEEE
Confidence            11 2799999999999999888789999999999999999999999999999999999999974

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*

Probab=99.97  E-value=3.3e-31  Score=254.03  Aligned_cols=196  Identities=21%  Similarity=0.397  Sum_probs=164.7

Q ss_pred             cCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeEE
Q psy3214          18 TDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQD   91 (336)
Q Consensus        18 ~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D   91 (336)
                      ..|.+++.+|+|+|.    +.+.+||||+++||++.      |..++.|+|++|+||+..++.|.+.||+|+++|.+++|
T Consensus        62 ~~Y~~~i~iGTP~Q~----~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D  137 (375)
T 1miq_A           62 IMFYGEGEVGDNHQK----FMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKD  137 (375)
T ss_dssp             EEEECCCEETTTTEE----CCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CEEEEEEEECCCCeE----EEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEECCcEEEEEeCCCeEEEEEEEE
Confidence            469999999999885    47889999999999974      44678999999999999999999999999999999999


Q ss_pred             EEEECCeEEeceEEEEEEe----eCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCC
Q psy3214          92 TLRIGDLTIKNQVFGEAIK----EPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKL  167 (336)
Q Consensus        92 ~v~ig~~~v~~~~fg~~~~----~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~  167 (336)
                      +|++|++++++ .||++..    ++  .|....+|||||||++.++..+..|++++|++||+|++++||+||++ +  +.
T Consensus       138 tv~ig~~~v~~-~Fg~~~~~~~~~~--~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~-~--~~  211 (375)
T 1miq_A          138 LVTLGHLSMPY-KFIEVTDTDDLEP--IYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPV-H--DV  211 (375)
T ss_dssp             EEEETTEEEEE-EEEEEEECGGGTT--HHHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCT-T--CT
T ss_pred             EEEEcCceECc-EEEEEEecccccc--ccccCCCceEEeCCCCcccccCCCCHHHHHHhccCcCCCEEEEEecC-C--CC
Confidence            99999999999 9999998    54  56667889999999999887778899999999999999999999999 4  23


Q ss_pred             CCceEEecCCCCCcccccccceeEecCC-cccc-----C--------CCccccchhhhhhhHHHHHHHhcc
Q psy3214         168 ANGEVPIPSAHDPKELESRIENKYQLPE-YDHV-----G--------DGCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       168 ~~G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~~-----~--------~~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      .+|+|+| ||+|+++|+|++.|++.... +|.+     .        ....++++++.+.+..+++++.+.
T Consensus       212 ~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~w~v~l~i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~  281 (375)
T 1miq_A          212 HAGYLTI-GGIEEKFYEGNITYEKLNHDLYWQIDLDVHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFAN  281 (375)
T ss_dssp             TEEEEEE-SSCCGGGEEEEEEEEEBSSSSSSEEEEEEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHH
T ss_pred             CCeEEEE-cccCHHHcCCceEEEecCCCceEEEEEEEEECCEEcccceEEecCCCccEEcCHHHHHHHHHH
Confidence            6899999 99999999999999865432 2210     0        012346677777777777776655

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A

Probab=99.97  E-value=1.5e-30  Score=244.73  Aligned_cols=201  Identities=25%  Similarity=0.450  Sum_probs=165.1

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-c----cccceeeeecccCccCCCcEEEEEeCCce-EEEEEe
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-V----FIGKFYTVFDMDNNQKNGTQFAIRYGSGA-VSGYLS   89 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c----~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs-~~G~~~   89 (336)
                      ....|.+++.+|+|+|..    .+.+||||+++||++. |    ..++.|+|++|+||+..++.|.+.||+|+ ++|.++
T Consensus        13 ~~~~Y~~~i~iGTP~q~~----~v~~DTGSs~lWv~~~~c~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~~G~~~   88 (325)
T 2apr_A           13 NDIEYYGQVTIGTPGKKF----NLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADGRTWSISYGDGSSASGILA   88 (325)
T ss_dssp             TTTEEEEEEEETTTTEEE----EEEEETTCCCCEEEBTTCSSCCTTSCCBCGGGCTTCEEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEEEEECCCCeEE----EEEEcCCCCCEEEccCCCchHhcCCCCCCcccCCCeeeCCCEEEEEECCCCCEEEEEE
Confidence            345799999999998864    7889999999999975 2    24678999999999999999999999998 899999


Q ss_pred             EEEEEECCeEEeceEEEEEEeeCCcccccccccccccCccccccc-CCCCchHHHHHHhcccCCCeEEEEeecCCCCCCC
Q psy3214          90 QDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAV-DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLA  168 (336)
Q Consensus        90 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~-~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~  168 (336)
                      +|+|+++++++++|.||++...++ .|...++|||||||++.++. ...++++++|++||+|++++||+||++ +. ...
T Consensus        89 ~D~v~~g~~~v~~~~fg~~~~~~~-~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i~~~~FS~~l~~-~~-~~~  165 (325)
T 2apr_A           89 KDNVNLGGLLIKGQTIELAKREAA-SFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGK-AK-NGG  165 (325)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEECH-HHHTSSCSEEEECSCGGGCSSTTCCCHHHHHHHTTSCSSSEEEEEECC-GG-GTC
T ss_pred             EEEEEECCEEECcEEEEEEeccCc-ccccCCCceEEEeCCcccccccCCCCHHHHHHhcCCCCCceEEEEecC-CC-CCC
Confidence            999999999999999999998875 46666689999999998764 457899999999999999999999977 32 246


Q ss_pred             CceEEecCCCCCcccccccceeEecC--Ccccc-C-----------C---CccccchhhhhhhHHHHHHHhcc
Q psy3214         169 NGEVPIPSAHDPKELESRIENKYQLP--EYDHV-G-----------D---GCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       169 ~G~l~f~GGiD~~~~~G~l~~~~~~~--~~~~~-~-----------~---~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      +|+|+| ||+|+++|+|++.|++...  .++.+ .           .   ...++++++.+.+..+++++.+.
T Consensus       166 ~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~vg~~~~~~~~~~iiDSGTs~~~lP~~~~~~~~~~  237 (325)
T 2apr_A          166 GGEYIF-GGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASVARA  237 (325)
T ss_dssp             CEEEEE-TCCCGGGBCSCCEEEECBCTTSSCEEEECEEEETTEEEECCEEEEECTTCSSEEEEHHHHHHHHHH
T ss_pred             CCEEEE-ccCCchhccCceEEEEccCCCCEEEEEEeEEEECCEecCCCceEEEecCCccEECCHHHHHHHHHH
Confidence            899999 9999999999999987642  22211 0           0   12336677777888766665554

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*

Probab=99.97  E-value=1.3e-30  Score=245.81  Aligned_cols=197  Identities=14%  Similarity=0.090  Sum_probs=163.5

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------c--cccceeeeecccCccCCCcEEEEEeCCceEEEEE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------V--FIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYL   88 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c--~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~   88 (336)
                      ...|.+++.+|  +|.    +.+.+||||+++||++.      |  ..++.|+|++| ||+..++.|++.||+|+++|.+
T Consensus        16 ~~~Y~~~i~iG--~Q~----~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~S-T~~~~~~~~~i~Yg~Gs~~G~~   88 (330)
T 1yg9_A           16 NTQYAGITKIG--NQN----FLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKP-KYISDGNVQVKFFDTGSAVGRG   88 (330)
T ss_dssp             CTTSEEEEEET--TEE----EEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSC-EEEEEEEEEEEETTTEEEEEEE
T ss_pred             CCEEEEEEEEC--CEE----EEEEEeCCCcceEEecCCCCCccCcccccCccCCCCC-ceEECCCEEEEEECCceEEEEE
Confidence            45899999999  443    47889999999999963      4  46779999999 9999999999999999999999


Q ss_pred             eEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccc-cCCCCchHHHHHHhcccCCCeEEEEeecCCCCCC
Q psy3214          89 SQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIA-VDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKL  167 (336)
Q Consensus        89 ~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s-~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~  167 (336)
                      ++|+|+++++++++|.||+++.. +..|...++|||||||++.++ ..+.+|++++|++||+| +++||+||++ +.+..
T Consensus        89 ~~Dtv~ig~~~~~~~~fg~~~~~-~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i-~~~FS~~l~~-~~~~~  165 (330)
T 1yg9_A           89 IEDSLTISQLTTSQQDIVLADEL-SQEVCILSADVVVGIAAPGCPNALKGKTVLENFVEENLI-APVFSIHHAR-FQDGE  165 (330)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEE-CTHHHHTTCSEEEECSCTTSCCTTSCCCHHHHHHHTTSS-CSEEEEEEEE-CTTSC
T ss_pred             EEEEEEECCEEEcCeEEEEEEEc-ccccccccCceEEEcCcchhccccCCCCHHHHHHhcCCC-CceEEEEEcC-CCCCC
Confidence            99999999999999999999988 445666788999999999887 66788999999999999 9999999999 43333


Q ss_pred             CCceEEecCCCCCcccccccceeEecCC-ccc-c------------CCC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         168 ANGEVPIPSAHDPKELESRIENKYQLPE-YDH-V------------GDG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       168 ~~G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~-~------------~~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      .+|+|+| ||+|+++|+|++.|++.... +|. .            ..+   ..++++++.+.+..+++++.+.
T Consensus       166 ~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~  238 (330)
T 1yg9_A          166 HFGEIIF-GGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEA  238 (330)
T ss_dssp             EEEEEEE-TSCCGGGEEEEEEEEEBSCTTSCCEECSEEEETTEEEECTTCEEEECTTCSSEEEEHHHHHHHHHH
T ss_pred             CCCEEEE-CCcCHHHccCceEEEECCCCCEEEEEeCeEEECCEEEcCCCcEEEEecCCccccCCHHHHHHHHHH
Confidence            4899999 99999999999999864421 221 0            111   2346778888888888777765

>1hc1_A Arthropodan hemocyanin; oxygen transport; 3.20A {Panulirus interruptus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1hc2_A 1hc3_A 1hc4_A 1hc5_A 1hc6_A 1hcy_A*

Probab=99.97  E-value=4.9e-31  Score=264.89  Aligned_cols=131  Identities=28%  Similarity=0.489  Sum_probs=114.6

Q ss_pred             cCCC-ccccchhhhhhhHHHHHHHhcc---ce-eeecCCCeEEeEEEEeccCCCCC-cceeeeeeeeccccccccccc-c
Q psy3214         199 VGDG-CSASYTEMQQWTNNIIEAINQG---YA-VTLEYPGVELKSLRILNKQGPTD-QLETFWQLIRMDEVYVRDKEL-T  271 (336)
Q Consensus       199 ~~~~-~~~s~t~l~~w~~~i~~~i~~g---~~-~~L~~pgv~i~~v~v~~~~gp~~-~l~T~~~~~~~dl~~~~~~~~-~  271 (336)
                      ..++ ++|.|++|+++++++++.+++.   |+ .+|.+|||+|++|+|       + +|.|||+.+++|++|+.+... .
T Consensus       371 ~~TalRDP~FYr~hk~Id~~f~~~K~~LppYt~~eL~fpGV~I~~V~V-------d~~L~Tyfe~~d~dlsn~ld~~~~~  443 (657)
T 1hc1_A          371 FETATRDPSFFRLHKYMDNIFKKHTDSFPPYTHDNLEFSGMVVNGVAI-------DGELITFFDEFQYSLINAVDSGENI  443 (657)
T ss_dssp             TTTSTTSTHHHHHHHHHHHHHHHHHTTSCCCCHHHHCCSSEEEEEEEE-------ESCCEEEECCEEEEGGGGSCCCSSC
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHhCCCCchhhccCCCeEEEEEEE-------ccEEEeeeeeeeeEHhhccCccccC
Confidence            4444 8999999999999999999865   55 789999999999999       6 999999999999998764321 1


Q ss_pred             ccccc---ccccCCCCcEEEEEEecCCCceeeEEEEEEEceecCCCCCcccccccccceEEeeeeeeC
Q psy3214         272 EEYNI---PYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH  336 (336)
Q Consensus       272 ~~~~~---~~~L~h~pF~y~i~v~n~s~~~~~~~vrifl~Pk~d~~g~~~~~~~~r~~~ielD~f~~~  336 (336)
                      .++.+   ++|||||||+|+|+|+|+.+.+++|+||||||||||++|++|+++|||++|||||||+++
T Consensus       444 ~~~~v~ar~~rLnHkPF~y~i~V~s~~~~~~~~~VRIFLgPk~D~~G~~~~l~e~R~~fiElD~F~~~  511 (657)
T 1hc1_A          444 EDVEINARVHRLNHNEFTYKITMSNNNDGERLATFRIFLCPIEDNNGITLTLDEARWFCIELDKFFQK  511 (657)
T ss_dssp             CCCCCEEEECCEEECCCEEEEEEEECSSSCCEEEEEEEEECCCCSSSCCCCSSTTTTTCEEEEEEEEE
T ss_pred             CceeEEEEecccCCCCeEEEEEEEcCCCCceeEEEEEEeCccccCCCCCCcHHHhhhhhEEeeeEEEE
Confidence            22233   899999999999999777666999999999999999999999999999999999999974

>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosyla glycoprotein, secreted, storage protein, oxygen transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea pernyi}

Probab=99.96  E-value=1.4e-30  Score=261.93  Aligned_cols=129  Identities=19%  Similarity=0.333  Sum_probs=113.0

Q ss_pred             cCCC-ccccchhhhhhhHHHHHHHhcc---ce-eeecCCCeEEeEEEEeccCCCCCcceeeeeeeeccccccccccc---
Q psy3214         199 VGDG-CSASYTEMQQWTNNIIEAINQG---YA-VTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKEL---  270 (336)
Q Consensus       199 ~~~~-~~~s~t~l~~w~~~i~~~i~~g---~~-~~L~~pgv~i~~v~v~~~~gp~~~l~T~~~~~~~dl~~~~~~~~---  270 (336)
                      ..++ ++|.|++|++.++++++.+++.   |+ .+|.+|||+|++|+|       |+|.|||+.+++|++|+.+.+.   
T Consensus       396 ~~TalRDP~FYrl~k~Id~~f~~yK~~LppYt~~eL~fpGV~I~~V~V-------d~L~Tyf~~~d~dlsn~l~~~~~~~  468 (674)
T 3gwj_A          396 YQTSLRDPTFYQLYNRIIGYFNQFKQYLEPHSQEKLHFVGVKVNNVVV-------DKLVTFFEYYDFDATNTVFLTEEEL  468 (674)
T ss_dssp             TTTGGGSHHHHHHHHHHHHHHHHHGGGSCCBCHHHHCCTTEEEEEEEE-------CCEEEEEEEEEEECGGGSCCCTTGG
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHhhCCCCccccccCCCeEEEEEEe-------CceEeeeeeeEEEeecccccccccc
Confidence            4444 8999999999999999999875   55 789999999999999       9999999999999998754321   


Q ss_pred             cc--cccc---ccccCCCCcEEEEEEecCCCceeeEEEEEEEceecCCCCCcccccccccceEEeeeeeeC
Q psy3214         271 TE--EYNI---PYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH  336 (336)
Q Consensus       271 ~~--~~~~---~~~L~h~pF~y~i~v~n~s~~~~~~~vrifl~Pk~d~~g~~~~~~~~r~~~ielD~f~~~  336 (336)
                      ..  ++.+   ++|||||||+|+|+|+  |+++++|+|||||||||||+|++|++++||++|||||||+++
T Consensus       469 ~~~~~~~v~ar~~rLnHkPF~y~i~V~--s~~~~~~~VRIFLgPK~D~~G~~~~l~e~R~~fiElD~F~~~  537 (674)
T 3gwj_A          469 KTKYPHNLKVRQPRLNHQPFNINIDIK--ADVATDAVVKIFMGPKYNENGFPITLENDWMKFFEMDWFTHK  537 (674)
T ss_dssp             GSCCCCCEEEEEEEEEECCCEEEEEEE--ESSCEEEEEEEEEEESBCTTSCBCCHHHHGGGCEEEEEEEEE
T ss_pred             cccCceeEEEEecccCCCCeEEEEEEE--cCCccEEEEEEEecccccCCCCCCcHHHhhhhhEEeEEEEEE
Confidence            12  2333   8999999999999995  467999999999999999999999999999999999999974

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...

Probab=99.96  E-value=7.6e-30  Score=240.34  Aligned_cols=196  Identities=21%  Similarity=0.331  Sum_probs=160.4

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-c----cccceeeeecccCccC-CCcEEEEEeCCce-EEEEEe
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-V----FIGKFYTVFDMDNNQK-NGTQFAIRYGSGA-VSGYLS   89 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c----~~~~~y~~~~Sst~~~-~~~~~~i~Yg~Gs-~~G~~~   89 (336)
                      ...|.+++.+|+|+|..    .+.+||||+++||++. |    |.++.|+|++|+||+. .++.|.+.||+|+ ++|.++
T Consensus        14 ~~~Y~~~i~iGTP~Q~~----~v~~DTGSs~lWv~~~~C~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~G~~~   89 (329)
T 1oew_A           14 DDAYITPVQIGTPAQTL----NLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVY   89 (329)
T ss_dssp             CCCEEEEEEETTTTEEE----EEEEETTCCCEEECBTTSCGGGC-CCCBCGGGCTTCEEEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEEEEECCCCeEE----EEEECCCCCCeEEecCCCCccccccCccCCccCccceecCCCeEEEEeCCCCcEEEEEE
Confidence            45799999999999864    7889999999999974 3    1577999999999999 6899999999999 899999


Q ss_pred             EEEEEECCeEEeceEEEEEEeeCCcccccccccccccCccccccc---CCCCchHHHHHHhcccCCCeEEEEeecCCCCC
Q psy3214          90 QDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAV---DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK  166 (336)
Q Consensus        90 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~---~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~  166 (336)
                      +|+|+++++++++|.||+++..++..+....+|||||||++.++.   ...++++++|++|  |++++||+||++ +   
T Consensus        90 ~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~--i~~~~FS~~L~~-~---  163 (329)
T 1oew_A           90 TDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKAS--LDSPVFTADLGY-H---  163 (329)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHTTT--SSSSEEEEECCS-S---
T ss_pred             EEEEEECCEEEeeeEEEEEEecCccccccCCCceEEEeccccccccCcCCCCCHHHHHHHh--ccCcEEEEEccC-C---
Confidence            999999999999999999998875433336789999999988764   3568899999987  899999999988 3   


Q ss_pred             CCCceEEecCCCCCcccccccceeEecC--Ccccc-------CC---------CccccchhhhhhhHHHHHHHhcc
Q psy3214         167 LANGEVPIPSAHDPKELESRIENKYQLP--EYDHV-------GD---------GCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       167 ~~~G~l~f~GGiD~~~~~G~l~~~~~~~--~~~~~-------~~---------~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                       .+|+|+| ||+|+++|+|++.|++..+  .+|.+       ..         ...++++++.+.+..+++++.+.
T Consensus       164 -~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~  237 (329)
T 1oew_A          164 -APGTYNF-GFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQ  237 (329)
T ss_dssp             -SCEEEEE-SCCCTTSSSSCCEEEECBCTTSSCEEEEEEEEETTSCCEEEEEEEEECTTCCSEEECHHHHHHHHTT
T ss_pred             -CCeEEEE-eccChHhcccceEEEEccCCCceEEEEEeeEEECCeeccCCCceEEEeCCCCCEECCHHHHHHHHHh
Confidence             4799999 9999999999999987642  22210       00         12335677777777777777664

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*

Probab=99.96  E-value=1e-29  Score=239.44  Aligned_cols=196  Identities=19%  Similarity=0.318  Sum_probs=161.6

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-c-----cccceeeeecccCccC-CCcEEEEEeCCce-EEEEE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-V-----FIGKFYTVFDMDNNQK-NGTQFAIRYGSGA-VSGYL   88 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c-----~~~~~y~~~~Sst~~~-~~~~~~i~Yg~Gs-~~G~~   88 (336)
                      ...|.+++.+|+|+|..    .+.+||||+++||++. |     ..++.|+|++|+||+. .++.|.+.||+|+ ++|.+
T Consensus        14 ~~~Y~~~i~iGTP~Q~~----~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~G~~   89 (329)
T 3c9x_A           14 DSEYITSVSIGTPAQVL----PLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVSGASWSISYGDGSSSSGDV   89 (329)
T ss_dssp             CCCEEEEEEETTTTEEE----EEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECTTCBEEEECTTSCEEEEEE
T ss_pred             CCEEEEEEEECCCCeEE----EEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcCCCeEEEEeCCCCcEEEEE
Confidence            45799999999998854    7889999999999975 3     2577999999999998 7899999999999 89999


Q ss_pred             eEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCccccccc---CCCCchHHHHHHhcccCCCeEEEEeecCCCC
Q psy3214          89 SQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAV---DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE  165 (336)
Q Consensus        89 ~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~---~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~  165 (336)
                      ++|+|+++++++++|.||++...++..+....+|||||||++.++.   ...++++++|++|  |++++||+||++ +  
T Consensus        90 ~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~--i~~~~FS~~l~~-~--  164 (329)
T 3c9x_A           90 YTDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTWFSNAASS--LAEPLFTADLRH-G--  164 (329)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHHTT--SSSSEEEEECCS-S--
T ss_pred             EEEEEEECCEEEcceEEEEEEecCccccccCCCceeEEeCcccccccCCCCCCCHHHHHHHh--cCCCEEEEEecC-C--
Confidence            9999999999999999999998875333346789999999988764   3467899999987  899999999988 3  


Q ss_pred             CCCCceEEecCCCCCcccccccceeEecC--Ccccc-------C------CC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         166 KLANGEVPIPSAHDPKELESRIENKYQLP--EYDHV-------G------DG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       166 ~~~~G~l~f~GGiD~~~~~G~l~~~~~~~--~~~~~-------~------~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                        .+|+|+| ||+|+++|+|+|.|++..+  .++.+       .      .+   ..++++++.+.+..+++++.+.
T Consensus       165 --~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~i~~~  238 (329)
T 3c9x_A          165 --QNGSYNF-GYIDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKLNRNSIDGIADTGTTLLLLDDNVVDAYYAN  238 (329)
T ss_dssp             --SCEEEEE-SSCCGGGCSSCEEEEECBCTTSSCEEEECCEEETTCCCCSCCEEEEECTTCCSEEECHHHHHHHHTT
T ss_pred             --CCcEEEE-eCcChhhcccceEEEEccCCCceEEEEEeeEEECCEeccCCCceEEEECCCCcEeCCHHHHHHHHHh
Confidence              4799999 9999999999999987642  22210       0      11   2336677778888887777765

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*

Probab=99.96  E-value=2.8e-29  Score=237.19  Aligned_cols=193  Identities=19%  Similarity=0.293  Sum_probs=161.2

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc---------ccccceeeeecccCccCCCcEEEEEeCCc-eEEE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD---------VFIGKFYTVFDMDNNQKNGTQFAIRYGSG-AVSG   86 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~---------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~G-s~~G   86 (336)
                      ...|.+++.+|+|+|..    .+.+||||+++||++.         |..++.|+|++|+||+..++.|.+.||+| +++|
T Consensus        11 ~~~Y~~~i~iGtP~Q~~----~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~~G   86 (339)
T 3fv3_A           11 GPSYASKVSVGSNKQQQ----TVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGDGSTSQG   86 (339)
T ss_dssp             SSSEEEEEEETTTTEEE----EEEEETTCCCEEEEEEEEEECTTCCTTTTCCBCGGGCTTCEEEEEEEEEECTTSCEEEE
T ss_pred             CCEEEEEEEEcCCCcEE----EEEEeCCCCceEEecCCCCCCCCCCCCCCCcCCCccCcceeeCCceEEEEECCCceEEE
Confidence            45799999999998864    7889999999999853         44578999999999999999999999999 5999


Q ss_pred             EEeEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCccccccc----------CCCCchHHHHHHhcccCCCeEE
Q psy3214          87 YLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAV----------DGVEPPFYNIIQQKLLEKNVFG  156 (336)
Q Consensus        87 ~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~----------~~~~~~~~~l~~q~~i~~~~Fs  156 (336)
                      .+++|+|+|+++++++|.||+++..++       .+||||||++.++.          ...++++++|++||+|++++||
T Consensus        87 ~~~~D~v~~g~~~v~~~~fg~~~~~~~-------~~GilGLg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fs  159 (339)
T 3fv3_A           87 TWGKDTVTINGVSITGQQIADVTQTSV-------DQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYS  159 (339)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEESS-------SSCEEECSCGGGCCCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEE
T ss_pred             EEEEEEEEECCEEECceEEEEEEecCC-------CceeEEecCccccccccccccccCccCCcHHHHHHHCCCCCCceEE
Confidence            999999999999999999999998763       48999999988753          2346799999999999999999


Q ss_pred             EEeecCCCCCCCCceEEecCCCCCcccccccceeEecCC-ccc------cCC---------CccccchhhhhhhHHHHHH
Q psy3214         157 FYLNRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPE-YDH------VGD---------GCSASYTEMQQWTNNIIEA  220 (336)
Q Consensus       157 ~~l~~~~~~~~~~G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~------~~~---------~~~~s~t~l~~w~~~i~~~  220 (336)
                      +||++ .  ....|+|+| ||+|+++|+|++.|++.... ++.      ..+         ...++++.+.+.+..++++
T Consensus       160 l~l~~-~--~~~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~  235 (339)
T 3fv3_A          160 LYLNS-P--SAETGTIIF-GGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSFGDGALLDSGTTLTYFPSDFAAQ  235 (339)
T ss_dssp             EECCC-T--TCSEEEEEE-TEEETTSBSSCCEEEEBCCSSSCEEEEEEEEESSCEEEEEEEEEECTTBSSEEECHHHHHH
T ss_pred             EEECC-C--CCCCeEEEE-eeechHHeecceEEEecccCccEEEEEEEEEECCEeecCCccEEEeCCCCCEecCHHHHHH
Confidence            99998 3  345899999 99999999999999864432 111      011         1234678888888888888


Q ss_pred             Hhcc
Q psy3214         221 INQG  224 (336)
Q Consensus       221 i~~g  224 (336)
                      +.+.
T Consensus       236 i~~~  239 (339)
T 3fv3_A          236 LADK  239 (339)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8776

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2

Probab=99.96  E-value=1.3e-29  Score=239.26  Aligned_cols=193  Identities=17%  Similarity=0.267  Sum_probs=159.5

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc---c------------cccceeeeecccCccCCCcEEEEEeCC
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD---V------------FIGKFYTVFDMDNNQKNGTQFAIRYGS   81 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~---c------------~~~~~y~~~~Sst~~~~~~~~~i~Yg~   81 (336)
                      ...|.+++.+|+|+|.+    .+.+||||+++||++.   |            ..++.|+|++|+||+..++.|.+.||+
T Consensus        11 ~~~Y~~~i~iGtP~q~~----~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~   86 (334)
T 1j71_A           11 GPSYAADIVVGSNQQKQ----TVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGD   86 (334)
T ss_dssp             SSSEEEEEEETTTTEEE----EEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEEEEBTT
T ss_pred             CcEEEEEEEEcCCCcEE----EEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCCCceEEEECC
Confidence            46899999999998864    7889999999999854   3            346789999999999999999999999


Q ss_pred             ce-EEEEEeEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccC--CCCchHHHHHHhcccCCCeEEEE
Q psy3214          82 GA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVD--GVEPPFYNIIQQKLLEKNVFGFY  158 (336)
Q Consensus        82 Gs-~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~--~~~~~~~~l~~q~~i~~~~Fs~~  158 (336)
                      |+ ++|.+++|+|+++++++++|.||+++..+       ..+||||||++.++..  ...+++++|++||+|++++||+|
T Consensus        87 Gs~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~  159 (334)
T 1j71_A           87 LTSSQGSFYKDTVGFGGISIKNQQFADVTTTS-------VDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLY  159 (334)
T ss_dssp             SCEEEEEEEEEEEEETTEEEEEEEEEEEEEES-------SSSCEEECSCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEE
T ss_pred             CCEEEEEEEEEEEEECCEEEccEEEEEEEecC-------CCccEEEEcCCcccCccccCCcHHHHHHHCCCCCccEEEEE
Confidence            98 79999999999999999999999998764       4689999999887542  45688999999999999999999


Q ss_pred             eecCCCCCCCCceEEecCCCCCcccccccceeEecCC-ccc------cCC---------CccccchhhhhhhHHHHHHHh
Q psy3214         159 LNRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPE-YDH------VGD---------GCSASYTEMQQWTNNIIEAIN  222 (336)
Q Consensus       159 l~~~~~~~~~~G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~------~~~---------~~~~s~t~l~~w~~~i~~~i~  222 (336)
                      |++ .  ...+|+|+| ||+|+++|+|++.|++.... ++.      ...         ...++++++.+.+..+++++.
T Consensus       160 l~~-~--~~~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l~  235 (334)
T 1j71_A          160 LNS-E--DASTGKIIF-GGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNADVVLDSGTTITYFSQSTADKFA  235 (334)
T ss_dssp             CCC-T--TCSEEEEEE-TEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEEEEEEEEECTTCSSEEECHHHHHHHH
T ss_pred             eCC-C--CCCCeEEEE-eeechHHccCceEEEEccCCCeEEEEEeEEEECCEeccCCccEEEeCCCCcEecCHHHHHHHH
Confidence            998 3  346899999 99999999999999754432 111      001         123467777788887777776


Q ss_pred             cc
Q psy3214         223 QG  224 (336)
Q Consensus       223 ~g  224 (336)
                      +.
T Consensus       236 ~~  237 (334)
T 1j71_A          236 RI  237 (334)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}

Probab=99.96  E-value=1.7e-29  Score=239.02  Aligned_cols=193  Identities=20%  Similarity=0.336  Sum_probs=160.0

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc---c------------cccceeeeecccCccCCCcEEEEEeCC
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD---V------------FIGKFYTVFDMDNNQKNGTQFAIRYGS   81 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~---c------------~~~~~y~~~~Sst~~~~~~~~~i~Yg~   81 (336)
                      ...|.+++.+|+|+|.+    .+.+||||+++||++.   |            ..+..|+|++|+||+..++.|.+.||+
T Consensus        11 ~~~Y~~~i~iGtP~q~~----~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~   86 (342)
T 2qzx_A           11 AITYTADITVGSDNQKL----NVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLNTRFDIKYGD   86 (342)
T ss_dssp             SSCEEEEEEETTTTEEE----EEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECTT
T ss_pred             CeEEEEEEEECCCCcEE----EEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCCCcEEEEeCC
Confidence            46799999999999864    7889999999999854   3            245689999999999999999999999


Q ss_pred             ce-EEEEEeEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccC--CCCchHHHHHHhcccCCCeEEEE
Q psy3214          82 GA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVD--GVEPPFYNIIQQKLLEKNVFGFY  158 (336)
Q Consensus        82 Gs-~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~--~~~~~~~~l~~q~~i~~~~Fs~~  158 (336)
                      |+ ++|.+++|+|+++++++++|.||+++..+       ..+||||||++.++..  ...+++++|++||+|++++||+|
T Consensus        87 Gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~  159 (342)
T 2qzx_A           87 GSYAKGKLYKDTVGIGGVSVRDQLFANVWSTS-------ARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLY  159 (342)
T ss_dssp             SCEEEEEEEEEEEEETTEEEEEEEEEEEEEEC-------SSSCEEECSCGGGCSSSSCCCCHHHHHHHTTSSSSSEEEEE
T ss_pred             CCeEEEEEEEEEEEECCEEecceEEEEEEecC-------CCcCEEEEccccccCCCccCccHHHHHHHCCCcCccEEEEE
Confidence            98 79999999999999999999999998764       4689999999887543  35689999999999999999999


Q ss_pred             eecCCCCCCCCceEEecCCCCCcccccccceeEecCC-ccc------cCC---------CccccchhhhhhhHHHHHHHh
Q psy3214         159 LNRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPE-YDH------VGD---------GCSASYTEMQQWTNNIIEAIN  222 (336)
Q Consensus       159 l~~~~~~~~~~G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~------~~~---------~~~~s~t~l~~w~~~i~~~i~  222 (336)
                      |++ .  ...+|+|+| ||+|+++|+|++.|++.... ++.      ...         ...++++.+.+.+..+++++.
T Consensus       160 l~~-~--~~~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l~  235 (342)
T 2qzx_A          160 LNS-A--EASTGQIIF-GGIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRNVDANTNVLLDSGTTISYFTRSIVRNIL  235 (342)
T ss_dssp             CCC-T--TCSEEEEEE-TEEETTSBSSCCEEEECCCSSSCEEEEEEEEETTEEEEEEEEEEECTTCSSEEECHHHHHHHH
T ss_pred             eCC-C--CCCCeEEEE-CccchhhEecceEEEeccCCceEEEEEeEEEECCEecCCCcCEEEeCCCCCEEcCHHHHHHHH
Confidence            998 3  346899999 99999999999999864432 111      011         123467788888888888777


Q ss_pred             cc
Q psy3214         223 QG  224 (336)
Q Consensus       223 ~g  224 (336)
                      +.
T Consensus       236 ~~  237 (342)
T 2qzx_A          236 YA  237 (342)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*

Probab=99.96  E-value=4.9e-29  Score=235.73  Aligned_cols=193  Identities=21%  Similarity=0.312  Sum_probs=160.8

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc---c------------cccceeeeecccCccCCCcEEEEEeCC
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD---V------------FIGKFYTVFDMDNNQKNGTQFAIRYGS   81 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~---c------------~~~~~y~~~~Sst~~~~~~~~~i~Yg~   81 (336)
                      ...|.+++.+|+|+|..    .+.+||||+++||++.   |            ..++.|+|++|+||+..++.|.+.||+
T Consensus        11 ~~~Y~~~i~iGtP~q~~----~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~   86 (342)
T 3pvk_A           11 QVTYAADITVGSNNQKL----NVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGD   86 (342)
T ss_dssp             SSSEEEEEEETTTTEEE----EEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECSS
T ss_pred             CcEEEEEEEEcCCCcEE----EEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecCCeEEEEecC
Confidence            46799999999998864    7889999999999753   3            347799999999999999999999999


Q ss_pred             ce-EEEEEeEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccC-CCCchHHHHHHhcccCCCeEEEEe
Q psy3214          82 GA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVD-GVEPPFYNIIQQKLLEKNVFGFYL  159 (336)
Q Consensus        82 Gs-~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~-~~~~~~~~l~~q~~i~~~~Fs~~l  159 (336)
                      |+ ++|.+++|+|+|+++++++|.||+++..+       ..+||||||++.++.. ...+++++|++||+|++++||+||
T Consensus        87 gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~L~~qg~i~~~~fs~~l  159 (342)
T 3pvk_A           87 GSSSQGTLYKDTVGFGGVSIKNQVLADVDSTS-------IDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYL  159 (342)
T ss_dssp             SCEEEEEEEEEEEEETTEEEEEEEEEEEEEES-------SSSCEEECSCGGGCSSCSSCCHHHHHHHTTSSSSSEEEEEC
T ss_pred             CCeEEEEEEEEEEEECCEEecceEEEEEEccC-------CCccEEEecCccccccccCCcHHHHHHhcCCCCCceEEEEe
Confidence            98 99999999999999999999999998764       4689999999887643 356899999999999999999999


Q ss_pred             ecCCCCCCCCceEEecCCCCCcccccccceeEecCCc-cc------cC----------CCccccchhhhhhhHHHHHHHh
Q psy3214         160 NRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPEY-DH------VG----------DGCSASYTEMQQWTNNIIEAIN  222 (336)
Q Consensus       160 ~~~~~~~~~~G~l~f~GGiD~~~~~G~l~~~~~~~~~-~~------~~----------~~~~~s~t~l~~w~~~i~~~i~  222 (336)
                      ++ .  ....|+|+| ||+|+++|+|++.|++..... +.      ..          ....++++.+.+.+..+++++.
T Consensus       160 ~~-~--~~~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i~  235 (342)
T 3pvk_A          160 NS-P--DAATGQIIF-GGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQII  235 (342)
T ss_dssp             CC-T--TCSEEEEEE-TEEETTSBSSCCEEEECCCSSSCEEEEEEEEETTEEEEEEEEEEEECTTCSSEEECHHHHHHHH
T ss_pred             CC-C--CCCCcEEEE-CccCccceeeeeEEeecCccceEEEEEeEEEECCEEecCCCceEEEeCCCCCeecCHHHHHHHH
Confidence            88 3  345899999 999999999999998544321 11      00          1123467888888888888877


Q ss_pred             cc
Q psy3214         223 QG  224 (336)
Q Consensus       223 ~g  224 (336)
                      +.
T Consensus       236 ~~  237 (342)
T 3pvk_A          236 KA  237 (342)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A

Probab=99.96  E-value=3.5e-29  Score=235.24  Aligned_cols=193  Identities=16%  Similarity=0.280  Sum_probs=157.9

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-c-----cccceeeeecccCccCCCcEEEEEeCCce-EEEEEe
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-V-----FIGKFYTVFDMDNNQKNGTQFAIRYGSGA-VSGYLS   89 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c-----~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs-~~G~~~   89 (336)
                      ...|.+++.+|  +|.    +.+.+||||+++||++. |     ..++.|+|++|+ ++..++.|++.||+|+ ++|.++
T Consensus        14 ~~~Y~~~i~iG--~Q~----~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~~~~~~i~Yg~Gs~~~G~~~   86 (323)
T 1bxo_A           14 DEEYITPVTIG--GTT----LNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATG-KELSGYTWSISYGDGSSASGNVF   86 (323)
T ss_dssp             GSCEEEEEEET--TEE----EEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHC-EEEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEEEEEC--CEE----EEEEEeCCCcceEEecCCCCchhccCCCCCCcccCC-cccCCCeEEEEeCCCCeEEEEEE
Confidence            45799999999  453    47889999999999974 3     357799999999 7778899999999999 899999


Q ss_pred             EEEEEECCeEEeceEEEEEEeeCCcccccccccccccCccccccc---CCCCchHHHHHHhcccCCCeEEEEeecCCCCC
Q psy3214          90 QDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAV---DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK  166 (336)
Q Consensus        90 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~---~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~  166 (336)
                      +|+|+++++++++|.||+++..++..+....+|||||||++.++.   ...++++++|++|  |++++||+||++ +   
T Consensus        87 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~--i~~~~FS~~L~~-~---  160 (323)
T 1bxo_A           87 TDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSS--LAQPLFAVALKH-Q---  160 (323)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHHHHGGG--BSSSEEEEECCS-S---
T ss_pred             EEEEEECCEEECcEEEEEEEecCcccccCCCCceEEEeCcccccccccCCCCCHHHHHHHh--cCCcEEEEEEeC-C---
Confidence            999999999999999999998875333336789999999988765   3578999999987  999999999988 3   


Q ss_pred             CCCceEEecCCCCCcccccccceeEecC--Ccccc-C-------------CCccccchhhhhhhHHHHHHHhcc
Q psy3214         167 LANGEVPIPSAHDPKELESRIENKYQLP--EYDHV-G-------------DGCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       167 ~~~G~l~f~GGiD~~~~~G~l~~~~~~~--~~~~~-~-------------~~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                       .+|+|+| ||+|+++|+|++.|++..+  .+|.+ .             ....++++++.+.+..+++++.+.
T Consensus       161 -~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~  232 (323)
T 1bxo_A          161 -QPGVYDF-GFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQ  232 (323)
T ss_dssp             -SCEEEEE-SSCCGGGBSSCCEEEECBCTTSSCEEEEEEEEETTEEEEEEEEEECTTCSSEEECHHHHHHHHTT
T ss_pred             -CCceEEE-eCcChhhccCceEEEECCCCCCeEEEEEeeEEECCccCCCceEEEeCCCCceeCCHHHHHHHHHh
Confidence             4799999 9999999999999987642  23311 0             012346777888888888777765

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2

Probab=99.96  E-value=7e-29  Score=234.67  Aligned_cols=162  Identities=27%  Similarity=0.448  Sum_probs=140.3

Q ss_pred             cCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeeeecccCccCCCcEEEEEeCCceEEEEEeEEEEEECC
Q psy3214          18 TDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGD   97 (336)
Q Consensus        18 ~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ig~   97 (336)
                      ..|.+++.+|+|+|.+    .+.+||||+++||++.    +.|+|++|++  ..++.|.+.||+|+++|.+++|+|+|++
T Consensus        12 ~~Y~~~i~iGTP~q~~----~v~~DTGSs~lWv~~~----~~y~~s~Ss~--~~~~~~~i~Yg~Gs~~G~~~~Dtv~~g~   81 (340)
T 1wkr_A           12 VDYVVNVGVGSPATTY----SLLVDTGSSNTWLGAD----KSYVKTSTSS--ATSDKVSVTYGSGSFSGTEYTDTVTLGS   81 (340)
T ss_dssp             SCEEEEEEETTTTEEE----EEEEETTCCCCEECSS----SCCCCCTTCE--EEEEEEEEECSSCEEEEEEEEEEEEETT
T ss_pred             cEEEEEEEECCCCcEE----EEEEeCCChhheecCC----CccCCcCCcc--ccCceEEEEECCcEEEEEEEEEEEEECC
Confidence            4899999999998864    7889999999999853    6899988875  4678999999999999999999999999


Q ss_pred             eEEeceEEEEEEeeCCcccccccccccccCccccccc--------CCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCC
Q psy3214          98 LTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAV--------DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLAN  169 (336)
Q Consensus        98 ~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~--------~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~  169 (336)
                      +++++|.||+++..++  |  ..+|||||||++.++.        ...++++++|++||+|++++||+||++.......+
T Consensus        82 ~~v~~~~fg~~~~~~~--~--~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~  157 (340)
T 1wkr_A           82 LTIPKQSIGVASRDSG--F--DGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTN  157 (340)
T ss_dssp             EEEEEEEEEEEEEEES--C--TTCSEEEECSCGGGGTTSEESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEE
T ss_pred             EEEcceEEEEEEccCC--C--cCCCcEEECCccccccccccccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCC
Confidence            9999999999998764  3  2589999999988764        45688999999999999999999998721123468


Q ss_pred             ceEEecCCCCCcccccccceeEecC
Q psy3214         170 GEVPIPSAHDPKELESRIENKYQLP  194 (336)
Q Consensus       170 G~l~f~GGiD~~~~~G~l~~~~~~~  194 (336)
                      |+|+| ||+|+++|+|++.|++...
T Consensus       158 G~l~f-Gg~d~~~~~g~l~~~p~~~  181 (340)
T 1wkr_A          158 GELTF-GATDSSKYTGSITYTPITS  181 (340)
T ss_dssp             EEEEE-SSCCGGGCSSCCEEEECCS
T ss_pred             cEEEE-cccChhhcccceEEEECcc
Confidence            99999 9999999999999987654

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2

Probab=99.96  E-value=2.5e-28  Score=229.55  Aligned_cols=193  Identities=21%  Similarity=0.335  Sum_probs=157.6

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-c-----cccceeeeecccCccCCCcEEEEEeCCce-EEEEEe
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-V-----FIGKFYTVFDMDNNQKNGTQFAIRYGSGA-VSGYLS   89 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c-----~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs-~~G~~~   89 (336)
                      ...|.+++.+|  +|.    +.+.+||||+++||++. |     ..++.|+|++|+ ++.+++.|.+.||+|+ ++|.++
T Consensus        13 ~~~Y~~~i~iG--~Q~----~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~~~~~~i~Yg~Gs~~~G~~~   85 (325)
T 1ibq_A           13 DEEYLTPVTVG--KST----LHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSA-TKLSGYSWDISYGDGSSASGDVY   85 (325)
T ss_dssp             TSCEEEEEEEB--TEE----EEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSC-EECTTCBEEEECSSSCEEEEEEE
T ss_pred             CCEEEEEEEEC--CEE----EEEEEeCCCccceEeeCCCCccccCCCCCCCchhcC-CccCCCEEEEEeCCCCEEEEEEE
Confidence            45799999999  453    47889999999999974 3     357799999999 7778999999999999 899999


Q ss_pred             EEEEEECCeEEeceEEEEEEeeCCcccccccccccccCccccccc---CCCCchHHHHHHhcccCCCeEEEEeecCCCCC
Q psy3214          90 QDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAV---DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK  166 (336)
Q Consensus        90 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~---~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~  166 (336)
                      +|+|+++++++++|.||+++..++..+....+|||||||++.++.   ...++++++|++|  |++++||+||++ +   
T Consensus        86 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~--i~~~~FS~~l~~-~---  159 (325)
T 1ibq_A           86 RDTVTVGGVTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTFFDTVKSQ--LDSPLFAVQLKH-D---  159 (325)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGG--SSSSEEEEEEET-T---
T ss_pred             EeEEEECCEEEcceEEEEEEecCccccccCCCceEEEeCcccccccCcCCCCCHHHHHHHh--cCCcEEEEEecC-C---
Confidence            999999999999999999998875433336789999999988774   3578999999987  899999999998 3   


Q ss_pred             CCCceEEecCCCCCcccccccceeEecC--Ccccc-------------CCC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         167 LANGEVPIPSAHDPKELESRIENKYQLP--EYDHV-------------GDG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       167 ~~~G~l~f~GGiD~~~~~G~l~~~~~~~--~~~~~-------------~~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                       .+|+|+| ||+|+++|+|+|.|++..+  .+|.+             ..+   ..++++++.+.+..+++++.+.
T Consensus       160 -~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~  233 (325)
T 1ibq_A          160 -APGVYDF-GYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIGDGSSSSSGFSAIADTGTTLILLDDEIVSAYYEQ  233 (325)
T ss_dssp             -EEEEEEE-SSCCGGGBSSCCEEEECBCTTSSCEEEECEEEETTSCCBSCCEEEEECTTCCSEEECHHHHHHHHTT
T ss_pred             -CCceEEE-CCcChhhccCceEEEEcCCCCceEEEEECcEEECCeeccCCCceEEEeCCCCcEeCCHHHHHHHHHh
Confidence             4799999 9999999999999987642  22210             011   2336677777888777777765

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*

Probab=99.96  E-value=1.4e-28  Score=231.18  Aligned_cols=193  Identities=20%  Similarity=0.339  Sum_probs=157.4

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-c-----cccceeeeecccCccCCCcEEEEEeCCce-EEEEEe
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-V-----FIGKFYTVFDMDNNQKNGTQFAIRYGSGA-VSGYLS   89 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c-----~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs-~~G~~~   89 (336)
                      ...|.+++.+|  +|.    +.+.+||||+++||++. |     ..++.|+|++|+ ++.+++.|.+.||+|+ ++|.++
T Consensus        14 ~~~Y~~~i~iG--~q~----~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss-~~~~~~~~~i~Yg~Gs~~~G~~~   86 (323)
T 1izd_A           14 DEEYITQVTVG--DDT----LGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSA-QKIDGATWSISYGDGSSASGDVY   86 (323)
T ss_dssp             GCCEEEEEEET--TEE----EEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTC-EEEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEEEEEC--CEE----EEEEEcCCCcceEEecCCCCcccccCCCCCCccccC-CccCCCeEEEEcCCCCeEEEEEE
Confidence            45799999999  453    47889999999999975 3     357799999999 7778899999999999 899999


Q ss_pred             EEEEEECCeEEeceEEEEEEeeCCcccccccccccccCccccccc---CCCCchHHHHHHhcccCCCeEEEEeecCCCCC
Q psy3214          90 QDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAV---DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK  166 (336)
Q Consensus        90 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~---~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~  166 (336)
                      +|+|+++++++++|.||+++..++..+....+|||||||++.++.   ...++++++|++|  |++++||+||++ +   
T Consensus        87 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~--i~~~~FS~~L~~-~---  160 (323)
T 1izd_A           87 KDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVKSS--LSEPIFAVALKH-N---  160 (323)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGG--SSSSEEEEECCT-T---
T ss_pred             EEEEEECCEEECceEEEEEEeccccccccCCCceEEecCcccccccCCCCCCCHHHHHHHh--ccCcEEEEEccC-C---
Confidence            999999999999999999998875333336789999999998775   3578999999987  899999999998 3   


Q ss_pred             CCCceEEecCCCCCcccccccceeEecC--Ccccc-C-----------CC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         167 LANGEVPIPSAHDPKELESRIENKYQLP--EYDHV-G-----------DG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       167 ~~~G~l~f~GGiD~~~~~G~l~~~~~~~--~~~~~-~-----------~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                       .+|+|+| ||+|+++|+|++.|++..+  .+|.+ .           .+   ..++++++.+.+..+++++.+.
T Consensus       161 -~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~aiiDSGTs~~~lp~~~~~~i~~~  233 (323)
T 1izd_A          161 -APGVYDF-GYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGSDSSSDSITGIADTGTTLLLLDDSIVDAYYEQ  233 (323)
T ss_dssp             -SCEEEEE-SSCCTTSEEEEEEEEECBCTTSSCEEEESEEEETTEEECCCEEEEECTTCCSEEECHHHHHHHHTT
T ss_pred             -CCCEEEE-CCcCccccccceEEEECCCCCceEEEEECeEEECCcccCCCceEEEeCCCcceeCCHHHHHHHHHh
Confidence             4799999 9999999999999987642  22210 0           11   2336677777777777777665

>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...

Probab=99.95  E-value=1.5e-28  Score=237.48  Aligned_cols=202  Identities=18%  Similarity=0.245  Sum_probs=155.9

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-c-cccceeeeecccCccCCCcEEEEEeCCceEEEEEeEEEEE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-V-FIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLR   94 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c-~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D~v~   94 (336)
                      ...|.+++.+|+|+|..    .+.+||||+++||++. | ..++.|+|++|+||+..++.|.+.||+|+++|.+++|+|+
T Consensus        27 ~~~Y~~~i~iGTP~q~~----~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~  102 (402)
T 3vf3_A           27 GQGYYVEMTVGSPPQTL----NILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVS  102 (402)
T ss_dssp             TTEEEEEEEETTTTEEE----EEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred             CCEEEEEEEECCCCeEE----EEEEeCCCCceEEccCCCCcccCCcCcccCcccccCCCEEEEEECcEEEEEEEEEEEEE
Confidence            45799999999999864    7889999999999985 3 3678999999999999999999999999999999999999


Q ss_pred             EC-CeEEece-EEEEEEeeCCcccccccccccccCcccccccC--CCCchHHHHHHhcccCCCeEEEEeecC----CCC-
Q psy3214          95 IG-DLTIKNQ-VFGEAIKEPGFTFVAAKFDGILGMGYDNIAVD--GVEPPFYNIIQQKLLEKNVFGFYLNRY----NTE-  165 (336)
Q Consensus        95 ig-~~~v~~~-~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~--~~~~~~~~l~~q~~i~~~~Fs~~l~~~----~~~-  165 (336)
                      |+ +..++.+ .|+++....+......++|||||||++.++..  ..++++++|++|++|+ ++||+||++.    +.. 
T Consensus       103 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i~-~~FS~~l~~~~~~~~~~~  181 (402)
T 3vf3_A          103 IPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSE  181 (402)
T ss_dssp             CTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCC-SCEEEEECCCC-------
T ss_pred             ECCccccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcHHHHHHHccCCc-cceEEEeecccccccccc
Confidence            99 4555543 46766665543223567899999999988754  3789999999999997 9999999752    111 


Q ss_pred             --CCCCceEEecCCCCCcccccccceeEecCC-ccc-------------cC--------CCccccchhhhhhhHHHHHHH
Q psy3214         166 --KLANGEVPIPSAHDPKELESRIENKYQLPE-YDH-------------VG--------DGCSASYTEMQQWTNNIIEAI  221 (336)
Q Consensus       166 --~~~~G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~-------------~~--------~~~~~s~t~l~~w~~~i~~~i  221 (336)
                        ...+|+|+| ||+|+++|+|+|+|++.... +|.             ..        ....++++++.+.+..+++++
T Consensus       182 ~~~~~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i  260 (402)
T 3vf3_A          182 VLASVGGSMII-GGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAA  260 (402)
T ss_dssp             ------EEEEE-SSCCGGGEEEEEEEEECSSBTTBEECEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHH
T ss_pred             cccCCCCEEEe-CCcCcccccCceEEEeCCcCcEEEEEEeEEEECCEEecccccccCCCeEEEECCCCcccCCHHHHHHH
Confidence              346899999 99999999999999754432 111             00        012336777888888888777


Q ss_pred             hcc
Q psy3214         222 NQG  224 (336)
Q Consensus       222 ~~g  224 (336)
                      .+.
T Consensus       261 ~~~  263 (402)
T 3vf3_A          261 VKS  263 (402)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}

Probab=99.95  E-value=4.3e-28  Score=232.82  Aligned_cols=204  Identities=17%  Similarity=0.289  Sum_probs=156.8

Q ss_pred             eCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccc--ccceeeeecccCccCCCcEEEEEeCCceEEEEEeEEE
Q psy3214          15 LTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVF--IGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDT   92 (336)
Q Consensus        15 i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~--~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D~   92 (336)
                      .....|.+++.+|+|.|..    .+.+||||+++||++.+|  .++.|+|++|+||+..++.|++.||+|+++|.+++|+
T Consensus        10 ~~~~~Y~~~i~iGTP~q~~----~v~~DTGSs~lWv~~~~c~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dt   85 (383)
T 2ewy_A           10 DSGRGYYLEMLIGTPPQKL----QILVDTGSSNFAVAGTPHSYIDTYFDTERSSTYRSKGFDVTVKYTQGSWTGFVGEDL   85 (383)
T ss_dssp             ETTTEEEEEEEETTTTEEE----EEEEETTCCCEEEECSCBTTBSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCCCcEEEEEEecCCCceE----EEEEecCCCceEEecCCCCccccCcccccCccceeCCceEEEEECCcEEEEEEEEEE
Confidence            3566799999999998864    788999999999998633  4678999999999999999999999999999999999


Q ss_pred             EEECCeEEec--eEEEEEEeeCCcccccccccccccCccccccc--CCCCchHHHHHHhcccCCCeEEEEeecC----CC
Q psy3214          93 LRIGDLTIKN--QVFGEAIKEPGFTFVAAKFDGILGMGYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNRY----NT  164 (336)
Q Consensus        93 v~ig~~~v~~--~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~--~~~~~~~~~l~~q~~i~~~~Fs~~l~~~----~~  164 (336)
                      |++++....+  +.|+++....+.......+|||||||++.++.  ....+++++|++|+.+ +++||+||++.    +.
T Consensus        86 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~q~~i-~~~FS~~l~~~~~~~~~  164 (383)
T 2ewy_A           86 VTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANI-PNVFSMQMCGAGLPVAG  164 (383)
T ss_dssp             EEETTTEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHHTC-CSCEEEEECCC------
T ss_pred             EEECCCccceeEEEEEEEEeecceeeccCcCceEEecCchhcccccccccCHHHHHHHccCC-CcceEEEeecccccccc
Confidence            9998643222  45676655443221235789999999998864  4678999999999999 79999999851    11


Q ss_pred             CCCCCceEEecCCCCCcccccccceeEecCC-ccc------------c---------CCCccccchhhhhhhHHHHHHHh
Q psy3214         165 EKLANGEVPIPSAHDPKELESRIENKYQLPE-YDH------------V---------GDGCSASYTEMQQWTNNIIEAIN  222 (336)
Q Consensus       165 ~~~~~G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~------------~---------~~~~~~s~t~l~~w~~~i~~~i~  222 (336)
                      ....+|+|+| ||+|+++|.|+|.|++.... ++.            .         .....++++++.+.+..+++++.
T Consensus       165 ~~~~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~  243 (383)
T 2ewy_A          165 SGTNGGSLVL-GGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVV  243 (383)
T ss_dssp             ---CCEEEEE-TSCCGGGCCSCEEEEECSSBTTBBCCEEEEEETTEECCCCTTTTTSSCEEECTTCSSEEEEHHHHHHHH
T ss_pred             CCCCCeEEEe-CccchhhccCccEEEecCCCceEEEEEEEEEECCEEccccccccCCccEEEEcCCccccCCHHHHHHHH
Confidence            2346899999 99999999999999754331 111            0         01123467888888888887776


Q ss_pred             cc
Q psy3214         223 QG  224 (336)
Q Consensus       223 ~g  224 (336)
                      +.
T Consensus       244 ~~  245 (383)
T 2ewy_A          244 EA  245 (383)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*

Probab=99.95  E-value=6e-28  Score=236.97  Aligned_cols=202  Identities=17%  Similarity=0.238  Sum_probs=159.1

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc--ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeEEEE
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD--VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTL   93 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~--c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D~v   93 (336)
                      ....|.+++.+|+|+|..    .+.+||||+++||++.  |..++.|+|++|+||+..++.|.+.||+|+++|.+++|+|
T Consensus        72 ~~~~Y~~~i~iGTP~Q~~----~v~~DTGSs~lWV~~~~cc~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv  147 (455)
T 3lpj_A           72 SGQGYYVEMTVGSPPQTL----NILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLV  147 (455)
T ss_dssp             TTTEEEEEEEETTTTEEE----EEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCeEE----EEEEcCCCcceEEecccccccCCcccCCCCCCcccCCccEEEEeCCeEEEEEEEEEEE
Confidence            345799999999999864    7889999999999986  3467899999999999999999999999999999999999


Q ss_pred             EECC-eEEe-ceEEEEEEeeCCcccccccccccccCcccccccC--CCCchHHHHHHhcccCCCeEEEEeecCCC-----
Q psy3214          94 RIGD-LTIK-NQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVD--GVEPPFYNIIQQKLLEKNVFGFYLNRYNT-----  164 (336)
Q Consensus        94 ~ig~-~~v~-~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~--~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~-----  164 (336)
                      +|++ ..++ ++.|+++....+......++|||||||++.++..  ..++++++|++|++|+ ++||+||++ ..     
T Consensus       148 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i~-~~FS~~L~~-~~~~~~~  225 (455)
T 3lpj_A          148 SIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCG-AGFPLNQ  225 (455)
T ss_dssp             ECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCC-SCEEEEECC-CSSCCCH
T ss_pred             EECCCcceeeEEEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcHHHHHHHccCCC-ceeEEEecc-ccccccc
Confidence            9984 3333 2568877766543223467899999999988754  3789999999999997 999999986 21     


Q ss_pred             ---CCCCCceEEecCCCCCcccccccceeEecCC-ccc------cC---------------CCccccchhhhhhhHHHHH
Q psy3214         165 ---EKLANGEVPIPSAHDPKELESRIENKYQLPE-YDH------VG---------------DGCSASYTEMQQWTNNIIE  219 (336)
Q Consensus       165 ---~~~~~G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~------~~---------------~~~~~s~t~l~~w~~~i~~  219 (336)
                         ....+|+|+| ||+|+++|+|+|+|++.... +|.      ..               ....++++.+.+.+..+++
T Consensus       226 ~~~~~~~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~  304 (455)
T 3lpj_A          226 SEVLASVGGSMII-GGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE  304 (455)
T ss_dssp             HHHHHSCCEEEEE-TSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTSSSEEEEHHHHH
T ss_pred             cccccCCCceEEE-CCcCcccccCceEEEecCCCceeEEEEeEEEECCEEccccccccCCCeEEEECCCcceeCCHHHHH
Confidence               1346899999 99999999999999754331 111      00               0123367788888887877


Q ss_pred             HHhcc
Q psy3214         220 AINQG  224 (336)
Q Consensus       220 ~i~~g  224 (336)
                      ++.+.
T Consensus       305 ~i~~~  309 (455)
T 3lpj_A          305 AAVKS  309 (455)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77664

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...

Probab=99.95  E-value=1.1e-27  Score=230.83  Aligned_cols=200  Identities=18%  Similarity=0.245  Sum_probs=156.7

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcccc--ccceeeeecccCccCCCcEEEEEeCCceEEEEEeEEEEE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVF--IGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLR   94 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~--~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D~v~   94 (336)
                      ...|.+++.+|+|.|.+    .+.+||||+++||++.+|  .++.|+|++|+||+..++.|.+.||+|+++|.+++|+|+
T Consensus        20 ~~~Y~~~i~iGTP~Q~~----~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~   95 (395)
T 2qp8_A           20 GQGYYVEMTVGSPPQTL----NILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVS   95 (395)
T ss_dssp             TTEEEEEEEETTTTEEE----EEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred             CceEEEEEEecCCCceE----EEEEecCCCceEEECCCCccccCCcCcccCCCceeCCceEEEEECCcEEEEEEEeEEEE
Confidence            45799999999998854    788999999999998643  467899999999999999999999999999999999999


Q ss_pred             EC-CeEEec-eEEEEEEeeCCcccc-cccccccccCcccccccC--CCCchHHHHHHhcccCCCeEEEEeecCCC-----
Q psy3214          95 IG-DLTIKN-QVFGEAIKEPGFTFV-AAKFDGILGMGYDNIAVD--GVEPPFYNIIQQKLLEKNVFGFYLNRYNT-----  164 (336)
Q Consensus        95 ig-~~~v~~-~~fg~~~~~~~~~~~-~~~~dGIlGLg~~~~s~~--~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~-----  164 (336)
                      ++ +..++. +.|+++....+ .|. ...+|||||||++.++..  ...+++++|++|++++ ++||+||++ ..     
T Consensus        96 ig~g~~~~~~~~~~~~~~~~~-~f~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~l~~q~~i~-~~FS~~L~~-~~~~~~~  172 (395)
T 2qp8_A           96 IPHGPNVTVRANIAAITESDK-FFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCG-AGFPLNQ  172 (395)
T ss_dssp             CTTSCSCEEEEEEEEEEEEES-CSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCC-SCEEEEECC-CSSCCCH
T ss_pred             ECCCCCceEEEEEEEEEccCc-ccccccCccceEEcCchhhccCCCCCCCHHHHHHHccCCc-ceEEEEecc-ccccccc
Confidence            98 555543 56776665443 332 457899999999887643  5789999999999997 899999987 21     


Q ss_pred             ---CCCCCceEEecCCCCCcccccccceeEecCC-cccc---------------------CCCccccchhhhhhhHHHHH
Q psy3214         165 ---EKLANGEVPIPSAHDPKELESRIENKYQLPE-YDHV---------------------GDGCSASYTEMQQWTNNIIE  219 (336)
Q Consensus       165 ---~~~~~G~l~f~GGiD~~~~~G~l~~~~~~~~-~~~~---------------------~~~~~~s~t~l~~w~~~i~~  219 (336)
                         ....+|+|+| ||+|+++|+|+|.|++.... ++.+                     .....++++++.+.+..+++
T Consensus       173 ~~~~~~~~G~l~f-Gg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~  251 (395)
T 2qp8_A          173 SEVLASVGGSMII-GGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE  251 (395)
T ss_dssp             HHHHHSCCEEEEE-TSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHH
T ss_pred             cccccCCCcEEEE-CCcCcccccCceEEeccCCCceEEEEEEEEEECCEEcccCccccCCceEEEEcCCCcEecCHHHHH
Confidence               1236899999 99999999999999754321 1210                     00123467778888887777


Q ss_pred             HHhcc
Q psy3214         220 AINQG  224 (336)
Q Consensus       220 ~i~~g  224 (336)
                      ++.+.
T Consensus       252 ~l~~~  256 (395)
T 2qp8_A          252 AAVKS  256 (395)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}

Probab=99.89  E-value=2.5e-23  Score=201.01  Aligned_cols=160  Identities=13%  Similarity=0.093  Sum_probs=126.1

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-----------------cccccee------eeecccCccCCCc
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-----------------VFIGKFY------TVFDMDNNQKNGT   73 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-----------------c~~~~~y------~~~~Sst~~~~~~   73 (336)
                      ...|.+++.+|+|.|..    .+.+||||+++||++.                 |..++.|      ++.+| ++....+
T Consensus        20 ~~~Y~~~i~iGTP~Q~~----~v~~DTGSs~lWv~~~~~~~Sst~~~~~C~s~~C~~~~~~~c~~c~~~~~s-~~~~~~~   94 (403)
T 3aup_A           20 TGLHWANLQKRTPLMQV----PVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCPAASRP-GCHKNTC   94 (403)
T ss_dssp             TCCEEEEEEETTTTEEE----EEEEETTCSSEEEECSSCCCCSSCBCCCTTBHHHHHTTCCCEEECSSSCBT-TBCSSEE
T ss_pred             CceEEEEEECCCCCcee----EEEEECCCCceeECCCCCCCCCCCCccCCCCccccCccccCccccCCCCCC-CCCCCcc
Confidence            46899999999998864    7889999999999976                 2234456      33443 3455678


Q ss_pred             EEEEEeC-Cc-eEEEEEeEEEEEECC-----------eEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCch
Q psy3214          74 QFAIRYG-SG-AVSGYLSQDTLRIGD-----------LTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPP  140 (336)
Q Consensus        74 ~~~i~Yg-~G-s~~G~~~~D~v~ig~-----------~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~  140 (336)
                      .|.+.|+ +| +++|.+++|+|+|++           +++++|.||++...+...+....+|||||||++.++      +
T Consensus        95 ~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s------~  168 (403)
T 3aup_A           95 GLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPIS------L  168 (403)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEECSSSTTS------H
T ss_pred             eeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEECCCCCcC------H
Confidence            9999998 44 499999999999998           899999999998865322445678999999998654      3


Q ss_pred             HHHHHHhcccCCCeEEEEeecCCCCCCCCceEEecCCCCCccc--c-c-----ccceeEec
Q psy3214         141 FYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKEL--E-S-----RIENKYQL  193 (336)
Q Consensus       141 ~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G~l~f~GGiD~~~~--~-G-----~l~~~~~~  193 (336)
                      ..+| +|+.+.+++||+||.+ .  ...+|+|+| || |+++|  + |     +|.|++..
T Consensus       169 ~~ql-~~~~~~~~~FS~~L~~-~--~~~~G~l~f-Gg-d~~~~~~~~G~~~~~~l~~~Pl~  223 (403)
T 3aup_A          169 PNQL-ASHFGLQRQFTTCLSR-Y--PTSKGAIIF-GD-APNNMRQFQNQDIFHDLAFTPLT  223 (403)
T ss_dssp             HHHH-HHHHTCCSEEEEECCS-C--TTSCEEEEE-SC-HHHHC--CTTCCTTTTEEEEECE
T ss_pred             HHHH-HhhcCCCCeEEEEcCC-C--CCCCeeEEE-CC-CchhccccccccccCceeecccc
Confidence            4445 5667888999999998 4  346899999 99 99999  6 6     89997544

>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A

Probab=99.88  E-value=9.5e-23  Score=197.53  Aligned_cols=163  Identities=13%  Similarity=0.137  Sum_probs=130.3

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-----------------ccccceeeeec-----ccCccCCCc
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-----------------VFIGKFYTVFD-----MDNNQKNGT   73 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-----------------c~~~~~y~~~~-----Sst~~~~~~   73 (336)
                      ...+|.+++.+|+|.|..    .+.+||||+++||+++                 |..++.|++..     ++++...++
T Consensus        18 ~~~~Y~~~i~iGTPpq~~----~v~~DTGS~~lWv~c~~c~~Sst~~~v~C~s~~C~~~~~~~~~~c~s~~~~~c~~~~c   93 (413)
T 3vla_A           18 STLQYVTTINQRTPLVSE----NLVVDLGGRFLWVDCDQNYVSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTC   93 (413)
T ss_dssp             TTCCEEEEEEETTTTEEE----EEEEETTCSSEEEECSSSCCCTTCEECBTTSHHHHHTTCCEEECCSSCCBTTBCSSEE
T ss_pred             CCCeEEEEEEcCCCCcce----EEEEeCCChhhhcccCCCCCCCCcCccCCCcccccccccCCCcccccCCCCCCCCCcC
Confidence            356899999999999864    7889999999999973                 22455677743     345666779


Q ss_pred             EEEEEeC-Cce-EEEEEeEEEEEEC---------CeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHH
Q psy3214          74 QFAIRYG-SGA-VSGYLSQDTLRIG---------DLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFY  142 (336)
Q Consensus        74 ~~~i~Yg-~Gs-~~G~~~~D~v~ig---------~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~  142 (336)
                      .|.+.|+ +|+ ++|.+++|+|+|+         ++++++|.||++....... ...++|||||||++.++      +..
T Consensus        94 ~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g-~~~~~dGIlGLg~~~lS------l~s  166 (413)
T 3vla_A           94 GVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQN-LASGVVGMAGLGRTRIA------LPS  166 (413)
T ss_dssp             EECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTT-SCTTCCEEEECSSSSSS------HHH
T ss_pred             cceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccC-cccccccccccCCCCcc------hHH
Confidence            9999995 554 8999999999997         3789999999998763211 23578999999998764      567


Q ss_pred             HHHHhcccCCCeEEEEeecCCCCCCCCceEEecCCCCCcc-----cccc-cceeEecC
Q psy3214         143 NIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKE-----LESR-IENKYQLP  194 (336)
Q Consensus       143 ~l~~q~~i~~~~Fs~~l~~~~~~~~~~G~l~f~GGiD~~~-----~~G~-l~~~~~~~  194 (336)
                      +|.+|+.+ +++||+||.+ +  ...+|+|+| ||+|..+     |.|+ +.|++.+.
T Consensus       167 ql~~~~~i-~~~FS~cL~~-~--~~~~G~l~f-Gg~~~~~~p~~~~~g~~l~~tPl~~  219 (413)
T 3vla_A          167 QFASAFSF-KRKFAMCLSG-S--TSSNSVIIF-GNDPYTFLPNIIVSDKTLTYTPLLT  219 (413)
T ss_dssp             HHHHHHTC-CSEEEEECCS-C--SSSCEEEEE-ESCCEEETTTEEECTTTSEEEECBC
T ss_pred             HHhhhcCC-CceEEEeCCC-C--CCCceEEEE-CCCcccccccccccCCceeEeeccc
Confidence            88999999 8999999998 4  346899999 9999864     7899 99987653

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A

Probab=99.85  E-value=5.7e-22  Score=190.13  Aligned_cols=186  Identities=10%  Similarity=0.088  Sum_probs=135.8

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc---------c-----cccceeeeecccCccC-----CC--c-
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD---------V-----FIGKFYTVFDMDNNQK-----NG--T-   73 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~---------c-----~~~~~y~~~~Sst~~~-----~~--~-   73 (336)
                      ....|.+++.+|+|         +.+||||+++||+++         |     ..++.|++. |+++..     .+  + 
T Consensus        12 ~~~~Y~~~i~iGtP---------v~~DTGSs~lWv~c~~~~~~~~~~C~s~~C~~~~~~~~~-sc~~~~~~~~~~~~~c~   81 (381)
T 1t6e_X           12 ATSLYTIPFHDGAS---------LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAP-GCPAPSCGSDKHDKPCT   81 (381)
T ss_dssp             TTCCEEEEEETTEE---------EEEETTCCCEEECCCTTCCCCCCBTTSHHHHHHHSSCCT-TCCCCCC------CBCE
T ss_pred             CCcEEEEEEeCCCE---------EEEECCCCceEEeCCCCCCCCccCCCCchhccccCCCCC-CCCCccCCcCcCCCccc
Confidence            35689999999986         688999999999963         2     223456554 333321     22  3 


Q ss_pred             EEEEEeCCce-EEEEEeEEEEEECC----eEEeceE----EEEEEeeCCcccccccccccccCcccccccCCCCchHHHH
Q psy3214          74 QFAIRYGSGA-VSGYLSQDTLRIGD----LTIKNQV----FGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNI  144 (336)
Q Consensus        74 ~~~i~Yg~Gs-~~G~~~~D~v~ig~----~~v~~~~----fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l  144 (336)
                      .|.|.||+|+ ++|.+++|+|++++    ..+++|.    ||++.......+ ...+|||||||++.++      +..+|
T Consensus        82 ~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~~~v~~~~~~~~Fg~~~~~~~~~~-~~~~dGIlGLg~~~~s------~~~ql  154 (381)
T 1t6e_X           82 AYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASL-PRGSTGVAGLANSGLA------LPAQV  154 (381)
T ss_dssp             ECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTS-CTTEEEEEECSSSTTS------HHHHH
T ss_pred             cccccccCCceeeEEEEEEEEEeeccCCCccccceeeeeEeecCcccccCCC-CCCCceEEEeCCCcch------hHHHH
Confidence            6999999999 59999999999984    6787764    599876532222 3678999999997663      55688


Q ss_pred             HHhcccCCCeEEEEeecCCCCCCCCceEEecCCCCCc--ccccccceeEecC-----Ccccc-------------CC---
Q psy3214         145 IQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK--ELESRIENKYQLP-----EYDHV-------------GD---  201 (336)
Q Consensus       145 ~~q~~i~~~~Fs~~l~~~~~~~~~~G~l~f~GGiD~~--~~~G~l~~~~~~~-----~~~~~-------------~~---  201 (336)
                      .+|++ .+++||+||.+ +    .+|+|+| ||+|..  +|.|++.|++...     .+++.             ..   
T Consensus       155 ~~~~~-~~~~FS~~L~~-~----~~G~l~f-Gg~~~~~~~~~g~l~~tPl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~  227 (381)
T 1t6e_X          155 ASAQK-VANRFLLCLPT-G----GPGVAIF-GGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGAL  227 (381)
T ss_dssp             HHHHT-CCSEEEEECCS-S----SCEEEEE-SCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCS
T ss_pred             hhhcc-cCceEEEEeCC-C----CCeeEEe-CCcccccccccCcceeeccccCCCCcceEEEEEEEEEcCEEecCCHHHc
Confidence            88885 47999999998 3    5899999 998875  5899999987653     22210             00   


Q ss_pred             ----CccccchhhhhhhHHHHHHHhccc
Q psy3214         202 ----GCSASYTEMQQWTNNIIEAINQGY  225 (336)
Q Consensus       202 ----~~~~s~t~l~~w~~~i~~~i~~g~  225 (336)
                          ...++++++.+.+..+++++.+..
T Consensus       228 ~~~~~iiDTGTtl~~lp~~~~~~l~~~~  255 (381)
T 1t6e_X          228 ATGGVMLSTRLPYVLLRPDVYRPLMDAF  255 (381)
T ss_dssp             CTTCEEECSSCSSEEECHHHHHHHHHHH
T ss_pred             cCCCEEEECCCccEEeCHHHHHHHHHHH
Confidence                123477888888888888777664

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*

Probab=99.68  E-value=1e-16  Score=143.91  Aligned_cols=127  Identities=37%  Similarity=0.650  Sum_probs=101.5

Q ss_pred             CCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCceEEec
Q psy3214          96 GDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIP  175 (336)
Q Consensus        96 g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G~l~f~  175 (336)
                      ||+++++|.||+++..++..|...++|||||||++.++..+..|++++|++||+|++++||+||++ +.....+|+|+| 
T Consensus         1 gg~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~-~~~~~~~G~l~f-   78 (241)
T 1lya_B            1 GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSR-DPDAQPGGELML-   78 (241)
T ss_dssp             CCEEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECS-STTCSSCEEEEE-
T ss_pred             CCeEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeC-CCCCCCCcEEEE-
Confidence            578999999999999877667777899999999998887778899999999999999999999999 433335899999 


Q ss_pred             CCCCCcccccccceeEecCC-ccc-------c-------CCC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         176 SAHDPKELESRIENKYQLPE-YDH-------V-------GDG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       176 GGiD~~~~~G~l~~~~~~~~-~~~-------~-------~~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      ||+|+++|+|++.|++.... +|.       +       ..+   ..++++++.+.+..+++++.+.
T Consensus        79 Gg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~  145 (241)
T 1lya_B           79 GGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKA  145 (241)
T ss_dssp             TSCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTSCEESTTCEEEEECTTCSSEEECHHHHHHHHHH
T ss_pred             CCcCHHHcCCceEEEECccccEEEEEEeEEEECCeeEeccCCCEEEEECCCccccCCHHHHHHHHHH
Confidence            99999999999999854321 121       0       111   2336778888888888777665

>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*

Probab=99.66  E-value=1.2e-16  Score=123.45  Aligned_cols=78  Identities=31%  Similarity=0.546  Sum_probs=70.2

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc--------ccccceeeeecccCccCCCcEEEEEeCCceEEEE
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD--------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGY   87 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~--------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~   87 (336)
                      ....|.+++.+|+|+|.+    .+.|||||+++||++.        |..++.|+|++|+||+..++.|.|.||+|+++|.
T Consensus        11 ~~~~Y~~~i~iGTP~Q~~----~v~~DTGSs~lWv~~~~C~~~~~~C~~~~~y~p~~SsT~~~~~~~~~i~Yg~Gs~~G~   86 (97)
T 1lya_A           11 MDAQYYGEIGIGTPPQCF----TVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGY   86 (97)
T ss_dssp             TTTEEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTCCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEE
T ss_pred             CCCeEEEEEEECCCCeEE----EEEEeCCCCceEEeEcCccCcccccCCCCCCCchhCCCceeCCCcEEEEECCcEEEEE
Confidence            456799999999998854    7889999999999974        3347899999999999999999999999999999


Q ss_pred             EeEEEEEECC
Q psy3214          88 LSQDTLRIGD   97 (336)
Q Consensus        88 ~~~D~v~ig~   97 (336)
                      +++|+|+|++
T Consensus        87 ~~~Dtv~i~g   96 (97)
T 1lya_A           87 LSQDTVSVPC   96 (97)
T ss_dssp             EEEEEEEESC
T ss_pred             EEEEEEEECC
Confidence            9999999986

>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2

Probab=98.54  E-value=5e-08  Score=73.15  Aligned_cols=61  Identities=52%  Similarity=1.034  Sum_probs=51.1

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTV   62 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~   62 (336)
                      +|+|+|+++|+.|+|++.+|+++...+....|+++++.+... ++++.||+|+.+.++.|.-
T Consensus        13 ~P~i~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~-~~~~~~ILGd~Fl~~~y~v   73 (87)
T 1b5f_B           13 MPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMDAT-LLGPLWILGDVFMRPYHTV   73 (87)
T ss_dssp             CCCEEEEETTEEEEECHHHHEEEESCTTTCEEEESEEECCCB-SSSBEEEECHHHHTTEEEE
T ss_pred             CCcEEEEECCEEEEECHHHhEEEccCCCCCEEEEEEEECCCC-CCCCeEEechHHhccEEEE
Confidence            699999999999999999999987655456899998876654 4567999999999887744

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*

Probab=97.66  E-value=5.5e-05  Score=67.00  Aligned_cols=62  Identities=65%  Similarity=1.345  Sum_probs=51.5

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTV   62 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~   62 (336)
                      +|+|+|.++|+.++|++.+|+++........|..++......+++.+.||+|+.+.++.|.-
T Consensus       166 ~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~v  227 (241)
T 1lya_B          166 LPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTV  227 (241)
T ss_dssp             SCCEEEEETTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTTEEEE
T ss_pred             CCeEEEEECCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechHHhcceEEE
Confidence            69999999999999999999998764335679998887766555678999999998887643

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2

Probab=97.64  E-value=2.9e-05  Score=76.10  Aligned_cols=61  Identities=54%  Similarity=1.230  Sum_probs=52.7

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      ||+|+|+++|+.|+|++.+|+++.+.+....|.++++.+.+..++.+.||+|+.|.+++|.
T Consensus       403 lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~  463 (478)
T 1qdm_A          403 MPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHT  463 (478)
T ss_dssp             CCCEEEEETTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEE
T ss_pred             cccEEEEECCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEE
Confidence            6999999999999999999999887654568999998877766677899999999888764

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}

Probab=97.60  E-value=3.3e-05  Score=73.53  Aligned_cols=62  Identities=50%  Similarity=1.011  Sum_probs=52.2

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTV   62 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~   62 (336)
                      +|+|+|+++|+.|+|++.+|+++...++...|.+++..+.+.+++.+.||+|+.|.+++|.-
T Consensus       308 ~P~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~v  369 (383)
T 2x0b_A          308 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTE  369 (383)
T ss_dssp             CCCEEEEETTEEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEE
T ss_pred             CceEEEEECCEEEEECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEE
Confidence            69999999999999999999998764445679999988776666678999999998887643

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A

Probab=97.33  E-value=0.00013  Score=69.11  Aligned_cols=58  Identities=45%  Similarity=1.078  Sum_probs=48.7

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTV   62 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~   62 (336)
                      +|+|+|++||+.|+|++.+|+++    .++.|..++..+...+.+.+.||+|+.+.++.|.-
T Consensus       299 lP~i~f~~~g~~~~l~~~~yi~~----~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~v  356 (370)
T 3psg_A          299 LPDIVFTIDGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTV  356 (370)
T ss_dssp             CCCEEEEETTEEEEECHHHHEEE----CSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEE
T ss_pred             CCcEEEEECCEEEEECHHHhccc----CCCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEE
Confidence            69999999999999999999998    23569999988776555566899999998887743

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}

Probab=97.11  E-value=0.00036  Score=65.35  Aligned_cols=61  Identities=52%  Similarity=1.075  Sum_probs=47.6

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.++|++.+|+++....+...|+.++......+++...||+|+.+.++.|.
T Consensus       267 ~P~i~f~f~g~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~  327 (351)
T 1tzs_A          267 MPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYS  327 (351)
T ss_dssp             SCCEEEEETTEEEEECTTTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEE
T ss_pred             CCcEEEEECCEEEEECHHHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEE
Confidence            6999999999999999999999865333457998888766554566889999998887763

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*

Probab=97.08  E-value=0.00058  Score=63.25  Aligned_cols=58  Identities=43%  Similarity=0.922  Sum_probs=48.6

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTV   62 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~   62 (336)
                      +|+|+|.++|+.++|++.+|+++.+    ..|..++..+.+..++.+.||+|+.+.++.|.-
T Consensus       258 ~P~i~f~f~g~~~~i~~~~y~~~~~----~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~v  315 (329)
T 1dpj_A          258 LPDLIFNFNGYNFTIGPYDYTLEVS----GSCISAITPMDFPEPVGPLAIVGDAFLRKYYSI  315 (329)
T ss_dssp             CCCEEEEETTEEEEECTTTSEEEET----TEEEECEEECCCCTTTCSEEEECHHHHTTEEEE
T ss_pred             CCcEEEEECCEEEEECHHHhEecCC----CEEEEEEEecccCCCCCCcEEEChHHhcceEEE
Confidence            6999999999999999999999864    469988887665545668999999998887643

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...

Probab=97.06  E-value=0.00032  Score=65.17  Aligned_cols=62  Identities=50%  Similarity=1.011  Sum_probs=51.7

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTV   62 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~   62 (336)
                      +|+|+|.++|+.++|++.+|+++....+...|..++..+.+..+....||+|+.+.++.|.-
T Consensus       265 ~p~i~f~f~g~~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~v  326 (341)
T 3k1w_A          265 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTE  326 (341)
T ss_dssp             CCCEEEEETTEEEEECHHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEE
T ss_pred             CCcEEEEECCEEEEECHHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEE
Confidence            69999999999999999999998765446789998887666555568899999998887743

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2

Probab=96.82  E-value=0.00068  Score=62.64  Aligned_cols=57  Identities=30%  Similarity=0.797  Sum_probs=47.6

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.++|++.+|+++.    ...|..++....+..++.+.||+|+.+.++.|.
T Consensus       253 ~P~i~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~  309 (324)
T 1am5_A          253 LPDITFTINGVKQPLPPSAYIEGD----QAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYT  309 (324)
T ss_dssp             SCCEEEEETTEEEEECHHHHEEES----SSCEEECEEECCSCCSSSCEEEECHHHHHHEEE
T ss_pred             CCcEEEEECCEEEEECHHHhcccC----CCeEEEEEEECccCCCCCCcEEEChHHhccEEE
Confidence            699999999999999999999986    457998888766544456799999998887763

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2

Probab=96.80  E-value=0.0011  Score=61.55  Aligned_cols=61  Identities=21%  Similarity=0.376  Sum_probs=47.9

Q ss_pred             CCcEEEEECCEEeeeCccCceeEecc-----CCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSI-----ASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~-----g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|.|.++|+.|+|++.+|+++...     |.+..|.+++..+....+....||+|+.+.++.|.
T Consensus       253 ~p~i~f~f~g~~~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~  318 (340)
T 1wkr_A          253 LQSLFFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYS  318 (340)
T ss_dssp             CCCEEEEETTEEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEE
T ss_pred             CCcEEEEECCEEEEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEE
Confidence            69999999999999999999987653     23467988777665444455789999998887764

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A

Probab=96.58  E-value=0.0013  Score=60.77  Aligned_cols=57  Identities=33%  Similarity=0.849  Sum_probs=46.7

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCC-cEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGP-IWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~-~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.++|++.+|+++.. |   .|..++....+..++.+ .||+|+.+.++.|.
T Consensus       257 ~P~i~f~f~g~~~~i~~~~y~~~~~-g---~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yv  314 (329)
T 1htr_B          257 LPSLTFIINGVEFPLPPSSYILSNN-G---YCTVGVEPTYLSSQNGQPLWILGDVFLRSYYS  314 (329)
T ss_dssp             SCCEEEEETTEEEEECHHHHEEECS-S---CEEESEEEECCCCTTSSCEEEECHHHHTTEEE
T ss_pred             CCcEEEEECCEEEEECHHHhcccCC-C---EEEEEEEECCCCCCCCCceEEEChHHhccEEE
Confidence            6999999999999999999999875 3   79988876554333456 89999998888763

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*

Probab=96.51  E-value=0.0015  Score=60.63  Aligned_cols=53  Identities=26%  Similarity=0.768  Sum_probs=44.6

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.++|++.+|+++.    ...|..++...    ++.+.||+|+.+.++.|.
T Consensus       262 ~p~i~f~fgg~~~~l~~~~y~~~~----~~~C~~~i~~~----~~~~~~ilG~~fl~~~y~  314 (330)
T 1yg9_A          262 LPDVTFVINGRNFNISSQYYIQQN----GNLCYSGFQPC----GHSDHFFIGDFFVDHYYS  314 (330)
T ss_dssp             SCCEEEEETTEEEEECHHHHEEEE----TTEEEESEEEE----TTCSSEEECHHHHTTEEE
T ss_pred             cCcEEEEECCEEEEECHHHhcccC----CCcEEEEEEeC----CCCCeEEecHHHhhheEE
Confidence            599999999999999999999986    35799887754    345789999999888764

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*

Probab=96.41  E-value=0.0017  Score=61.36  Aligned_cols=58  Identities=28%  Similarity=0.608  Sum_probs=46.6

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.++|++.+|+++....+...|..+++....+   +..||+|+.+.++.|.
T Consensus       302 ~P~i~f~f~g~~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~~---~~~~ILG~~fl~~~yv  359 (375)
T 1miq_A          302 MPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDID---SNTFILGDPFMRKYFT  359 (375)
T ss_dssp             CCCEEEECSSCEEEECGGGSEEESSSSSCSEEEESEEECCSS---SSEEEECHHHHHHEEE
T ss_pred             CCcEEEEECCEEEEECHHHhEeeccCCCCCeEEEEEEECCCC---CCcEEECHHHhccEEE
Confidence            699999999999999999999987542345799888765431   3789999998887763

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*

Probab=96.27  E-value=0.0024  Score=61.94  Aligned_cols=59  Identities=27%  Similarity=0.594  Sum_probs=48.0

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTV   62 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~   62 (336)
                      +|+|+|.++|..++|++.+|+++.....+..|..++.....+   ...||+|+.+.++.|.-
T Consensus       377 ~P~itf~fgg~~i~lp~~~yi~~~~~~~~~~C~~~i~~~~~~---~~~~ILG~~FLr~~YvV  435 (451)
T 3qvc_A          377 LPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDLE---KNTFVLGDPFMRKYFTV  435 (451)
T ss_dssp             CCCEEEEETTEEEEECHHHHEEECTTTSTTEEEECEEECCCS---TTEEEECHHHHHHEEEE
T ss_pred             CCcEEEEECCEEEEEcHHHheeecccCCCCeEEEEEEeCCCC---CCCEEECHHHhhcEEEE
Confidence            699999999999999999999987654457899888764321   57899999998887743

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A

Probab=96.25  E-value=0.0021  Score=59.25  Aligned_cols=53  Identities=42%  Similarity=0.871  Sum_probs=42.8

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.++|++.+|+++    ....|..++....    +...||+|+.+.++.|.
T Consensus       256 ~P~i~f~f~g~~~~i~~~~y~~~----~~~~C~~~i~~~~----~~~~~iLG~~fl~~~y~  308 (323)
T 3cms_A          256 MPTVVFEINGKMYPLTPSAYTSQ----DQGFCTSGFQSEN----HSQKWILGDVFIREYYS  308 (323)
T ss_dssp             SCCEEEEETTEEEEECHHHHEEE----ETTEEEESEEEC-------CCEEECHHHHTTEEE
T ss_pred             CceEEEEECCEEEEECHHHhccC----CCCEEEEEEEeCC----CCCcEEECHHHhhceEE
Confidence            69999999999999999999998    2457998776543    44789999999888764

>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A

Probab=95.99  E-value=0.0034  Score=57.67  Aligned_cols=54  Identities=43%  Similarity=0.963  Sum_probs=43.9

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTV   62 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~   62 (336)
                      +|+|+|.++|+.++|++.+|+++    ....|..++..    +...+.||+|+.+.++.|.-
T Consensus       253 ~p~i~f~f~g~~~~l~~~~y~~~----~~~~C~~~i~~----~~~~~~~ilG~~fl~~~y~v  306 (320)
T 4aa9_A          253 MPTVVFEINGRDYPLSPSAYTSK----DQGFCTSGFQG----DNNSELWILGDVFIREYYSV  306 (320)
T ss_dssp             CCCEEEEETTEEEEECHHHHEEE----ETTEEEESEEE----ETTCCCEEECHHHHTTEEEE
T ss_pred             CceEEEEECCEEEEECHHHhccC----CCCeEEEEEEc----CCCCCcEEEChHHhcceEEE
Confidence            69999999999999999999976    34679987765    23446899999998887743

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A

Probab=95.87  E-value=0.0061  Score=56.17  Aligned_cols=56  Identities=23%  Similarity=0.380  Sum_probs=44.5

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.++|++.+|+++..- ....|..++....    +.+.||+|+.+.++.|.
T Consensus       253 ~P~i~f~fgg~~~~l~~~~~~~~~~~-~~~~C~~~i~~~~----~~~~~ILG~~fl~~~y~  308 (323)
T 1bxo_A          253 LPDFSVSISGYTATVPGSLINYGPSG-DGSTCLGGIQSNS----GIGFSIFGDIFLKSQYV  308 (323)
T ss_dssp             CCCEEEEETTEEEEECHHHHEEEECS-SSSCEEESEEECT----TCSSEEECHHHHTTEEE
T ss_pred             CceEEEEECCEEEEECHHHeEEeccC-CCCeEEEEEECCC----CCCcEEEChHHHcCEEE
Confidence            69999999999999999999987542 3367998776432    45789999999888764

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...

Probab=95.86  E-value=0.0033  Score=61.01  Aligned_cols=58  Identities=28%  Similarity=0.673  Sum_probs=46.5

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|..++|++.+|+++....+...|..++.....   ....||+|+.+.++.|.
T Consensus       378 ~P~itf~fgg~~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~---~~~~~ILGd~Flr~~yv  435 (453)
T 2bju_A          378 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDF---PVPTFILGDPFMRKYFT  435 (453)
T ss_dssp             CCCEEEECSSCEEEECHHHHEEECTTTSTTEEEECEEECCC---SSCEEEECHHHHHHEEE
T ss_pred             CCcEEEEECCEEEEECHHHhEeecccCCCceEEEEEEeCCC---CCCCEEECHHHhhcEEE
Confidence            69999999999999999999998764334679988876442   13589999998887763

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2

Probab=95.82  E-value=0.0065  Score=56.03  Aligned_cols=57  Identities=23%  Similarity=0.398  Sum_probs=44.2

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.++|++.+|+++..-.....|..++...    ...+.||+|+.+.++.|.
T Consensus       254 ~P~i~f~fgg~~~~i~~~~~~~~~~~~~~~~C~~~i~~~----~~~~~~iLG~~fl~~~y~  310 (325)
T 1ibq_A          254 LPDFTVVIGDYKAVVPGKYINYAPVSTGSSTCYGGIQSN----SGLGLSILGDVFLKSQYV  310 (325)
T ss_dssp             CCCEEEEETTEEEEECHHHHEEEESSTTCSEEEESEEEC----TTTCSEEECHHHHTTEEE
T ss_pred             CCcEEEEECCEEEEECHHHhcccccCCCCCeEEEEEEcC----CCCCceEEChHHhcCEEE
Confidence            699999999999999999999865321236798776543    234789999999888764

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*

Probab=95.76  E-value=0.0067  Score=55.92  Aligned_cols=56  Identities=20%  Similarity=0.335  Sum_probs=44.6

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTV   62 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~   62 (336)
                      +|+|+|.++|+.++|++.+|+++..  ....|..++....    ..+.||+|+.+.++.|.-
T Consensus       254 ~P~i~f~fgg~~~~i~~~~~~~~~~--~~~~C~~~i~~~~----~~~~~IlG~~fl~~~y~v  309 (323)
T 1izd_A          254 LPDFSVTIGDYTATVPGEYISFADV--GNGQTFGGIQSNS----GIGFSIFGDVFLKSQYVV  309 (323)
T ss_dssp             CCCEEEEETTEEEEECHHHHEEEEC--STTEEEESEEECT----TTSSEEECHHHHTTEEEE
T ss_pred             CceEEEEECCEEEecCHHHeEEecC--CCCeEEEEEEcCC----CCCcEEEChHHhcCEEEE
Confidence            6999999999999999999998753  2467988776432    347899999998887643

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*

Probab=95.74  E-value=0.011  Score=54.65  Aligned_cols=57  Identities=23%  Similarity=0.306  Sum_probs=44.2

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.++|++.+|+++..-.+...|+.++...    +..+.||+|+.+.++.|.
T Consensus       259 ~P~i~f~f~g~~~~ip~~~~~~~~~~~~~~~C~~~i~~~----~~~~~~ILG~~fl~~~y~  315 (329)
T 3c9x_A          259 LPSFSFGVGSSTITIPGDLLNLTPLEEGSSTCFGGLQSS----SGIGINIFGDVALKAALV  315 (329)
T ss_dssp             CCCEEEEETTEEEEECGGGGEEEESSTTCSEEEESEEEC----TTTTSEEECHHHHTTEEE
T ss_pred             CCcEEEEECCEEEEECHHHeeeeccCCCCCeEEEEEEcC----CCCCcEEEChHHhccEEE
Confidence            699999999999999999999875322246798776542    235789999999888764

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...

Probab=95.69  E-value=0.0078  Score=55.59  Aligned_cols=57  Identities=19%  Similarity=0.290  Sum_probs=44.1

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.+||+.++|++.+|+++..-.....|..++....    ..+.||+|+.+.++.|.
T Consensus       258 ~P~i~f~fgg~~~~ip~~~~~~~~~~~~~~~C~~~i~~~~----~~~~~iLG~~fl~~~y~  314 (329)
T 1oew_A          258 LPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSA----GIGINIFGDVALKAAFV  314 (329)
T ss_dssp             CCCEEEEETTEEEEECHHHHEEEESSTTCSEEEESEEEST----TTSSEEECHHHHTTEEE
T ss_pred             CCcEEEEECCEEEEECHHHeeeeecCCCCCeEEEEEEeCC----CCCceEEChHHhcCEEE
Confidence            6999999999999999999998753222467987765432    35789999999888764

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*

Probab=95.19  E-value=0.0089  Score=55.88  Aligned_cols=54  Identities=17%  Similarity=0.364  Sum_probs=44.2

Q ss_pred             CcEEEEE--C-----CEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           2 PNVDIIL--G-----GKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         2 p~i~~~~--~-----~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      |+|+|.+  +     |..++|++.+|+++...+ ...|+.++...     +.+.||+|+.+.++.|.
T Consensus       280 p~i~f~f~~g~~~~~g~~~~i~~~~y~~~~~~~-~~~C~~~i~~~-----~~~~~iLG~~fl~~~yv  340 (361)
T 1mpp_A          280 TTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKS-GETCMFIVLPD-----GGNQFIVGNLFLRFFVN  340 (361)
T ss_dssp             CEEEEEEECTTCSSCEEEEEEEGGGGEEECSSS-SCEEEESEEEE-----SSSCCEEEHHHHTTEEE
T ss_pred             CcEEEEEEcCCcCCCCeEEEECHHHhEEecCCC-CCeeEEEEEeC-----CCCCEEEChHHhccEEE
Confidence            9999999  8     999999999999987543 35799888754     34689999998887763

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A

Probab=95.14  E-value=0.018  Score=53.04  Aligned_cols=54  Identities=24%  Similarity=0.495  Sum_probs=43.2

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTV   62 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~   62 (336)
                      +|+|+|.++|..++|++.+|+++..   ...|+.++....     ...||+|+.+.++.|.-
T Consensus       257 ~p~i~f~f~g~~~~ip~~~~~~~~~---~~~C~~~i~~~~-----~~~~iLG~~fl~~~y~v  310 (325)
T 2apr_A          257 FKPLVFSINGASFQVSPDSLVFEEF---QGQCIAGFGYGN-----WGFAIIGDTFLKNNYVV  310 (325)
T ss_dssp             CCCEEEEETTEEEEECGGGGEEEEE---TTEEEESEEEES-----SSSEEECHHHHTTEEEE
T ss_pred             CCcEEEEECCEEEEECHHHEEEcCC---CCeEEEEEEcCC-----CCCEEECHHHhcceEEE
Confidence            6999999999999999999998754   457987765322     46799999998887643

>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A

Probab=95.07  E-value=0.0088  Score=57.21  Aligned_cols=56  Identities=16%  Similarity=0.334  Sum_probs=43.6

Q ss_pred             CCcEEEEECC--EEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGG--KNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~--~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|+++|  +.|+|++.+|++++.-  ...|+ +++....+  ..+.||+|+.+.+++|.
T Consensus       327 lP~i~f~f~g~~~~~~l~~~~y~~~~~~--~~~Cl-~~~~~~~~--~~~~~IlGd~fl~~~~v  384 (413)
T 3vla_A          327 VPSIDLVLQSESVVWTITGSNSMVYIND--NVVCL-GVVDGGSN--LRTSIVIGGHQLEDNLV  384 (413)
T ss_dssp             CCCEEEECSSTTCEEEECHHHHEEEEET--TEEEE-CEEEEESS--CSSSEEECHHHHTTEEE
T ss_pred             CCcEEEEEcCCcEEEEeCccceEEEeCC--CcEEE-EEEecCCC--cccceeEehhhhcCeEE
Confidence            6999999998  9999999999998753  35697 77654432  34789999988777653

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A

Probab=94.74  E-value=0.017  Score=54.44  Aligned_cols=58  Identities=28%  Similarity=0.501  Sum_probs=41.5

Q ss_pred             CCcEEEEEC-CEEeeeCccCceeEeccCCccceecccccCcCC---CCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILG-GKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIP---PPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~-~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~d---tGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|+++ |+.|+|++.+|+++..  ....|+ +++.....   ....+.||+|+.+.++.|.
T Consensus       297 ~P~i~f~f~gg~~~~l~~~~y~~~~~--~~~~Cl-~~~~~~~~~~~~~~~~~~ILGd~fl~~~yv  358 (381)
T 1t6e_X          297 VPNVQLGLDGGSDWTMTGKNSMVDVK--QGTACV-AFVEMKGVAAGDGRAPAVILGGAQMEDFVL  358 (381)
T ss_dssp             CCCEEEEETTSCEEEECHHHHEEEEE--TTEEEE-SEEECCCCC------CSEEECHHHHTTEEE
T ss_pred             CCeEEEEECCCcEEEeCCCeEEEEcC--CCeEEE-EEEcCCCcccccCCCceEEEChHHhCCcEE
Confidence            599999997 5999999999999864  235797 66543310   0123689999998877653

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}

Probab=94.67  E-value=0.014  Score=55.56  Aligned_cols=55  Identities=16%  Similarity=0.350  Sum_probs=41.8

Q ss_pred             CCcEEEEECCE---EeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIILGGK---NFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~~~~---~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      +|+|+|.++|.   .++|++.+|+++..  ....|+ +++....+  ....||+|+.+.++.|
T Consensus       313 ~P~i~f~f~g~~~~~~~l~~~~y~~~~~--~~~~C~-~~~~~~~~--~~~~~ILG~~fl~~~y  370 (403)
T 3aup_A          313 YPSVDLVMDKPNGPVWRISGEDLMVQAQ--PGVTCL-GVMNGGMQ--PRAEITLGARQLEENL  370 (403)
T ss_dssp             CCCEEEEESSTTCCEEEECHHHHEEEC-----CEEE-CEEECCSC--CSSSEEECHHHHTTSC
T ss_pred             CCcEEEEEcCCCceEEEEcccceEEEcC--CCeEEE-EEEcCCCC--CCCcEEEChHHhcCeE
Confidence            69999999996   99999999999764  245799 87754422  3468999998877654

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*

Probab=94.18  E-value=0.024  Score=52.35  Aligned_cols=51  Identities=27%  Similarity=0.421  Sum_probs=41.8

Q ss_pred             CCcEEEEE-CCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIIL-GGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~-~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.+ +|..++|++.+|+++.+   ...|..++..       ++.||+|+.+.++.|-
T Consensus       263 ~p~i~f~f~~g~~~~v~~~~~~~~~~---~~~C~~~i~~-------~~~~ilG~~fl~~~y~  314 (339)
T 3fv3_A          263 SGTTVFNFGNGAKITVPNTEYVYQNG---DGTCLWGIQP-------SDDTILGDNFLRHAYL  314 (339)
T ss_dssp             CSEEEEEETTSCEEEEEGGGGEEECS---SSCEEESEEE-------CSSCEECHHHHTTEEE
T ss_pred             CCcEEEEECCCCEEEECHHHheeeCC---CCeEEEEEEe-------CCcEEeChHHHhCEEE
Confidence            58999999 58999999999998762   3579877764       3579999998888763

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2

Probab=92.89  E-value=0.052  Score=50.06  Aligned_cols=52  Identities=29%  Similarity=0.427  Sum_probs=40.8

Q ss_pred             CCcEEEEE-CCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIIL-GGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~-~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.+ ||+.++|++.+|+++..-  ...|..++..       .+.||+|+.+.++.|-
T Consensus       257 ~p~i~f~f~~g~~~~i~~~~y~~~~~~--~~~C~~~i~~-------~~~~iLG~~fl~~~y~  309 (334)
T 1j71_A          257 SGDAVFNFDQGVKITVPLSELILKDSD--SSICYFGISR-------NDANILGDNFLRRAYI  309 (334)
T ss_dssp             CSEEEEEESTTCEEEEEGGGGEEECSS--SSCEEESEEE-------CTTCEECHHHHTTEEE
T ss_pred             CCceEEEEcCCcEEEECHHHheeecCC--CCeeEEEEeE-------CCCcEEChHhhccEEE
Confidence            58999999 799999999999998643  2359876653       1469999998887763

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}

Probab=92.88  E-value=0.056  Score=49.94  Aligned_cols=54  Identities=15%  Similarity=0.297  Sum_probs=41.3

Q ss_pred             CCcEEEEE-CCEEeeeCccCceeEecc--C-CccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIIL-GGKNFTLTPTDYVLKVSI--A-SSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~-~~~~~~i~~~~y~~~~~~--g-~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.+ ||+.++|++.+|+++...  + ....|..++..       .+.||+|+.+.++.|-
T Consensus       259 ~p~i~f~f~~g~~~~i~~~~~~~~~~~~~~~~~~~C~~~i~~-------~~~~iLG~~fl~~~y~  316 (342)
T 2qzx_A          259 SGTIDFQFGNNLKISVPVSEFLFQTYYTSGKPFPKCEVRIRE-------SEDNILGDNFLRSAYV  316 (342)
T ss_dssp             CCEEEEEETTTEEEEEEGGGGEECCBCTTSCBCSSEEESEEE-------CSSCEECHHHHTTEEE
T ss_pred             CCcEEEEECCCcEEEEcHHHhcccccccCCCCCCccEEEEec-------CCCcEeChHhhhcEEE
Confidence            58999999 799999999999997531  2 23569876643       1469999998887763

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*

Probab=92.22  E-value=0.059  Score=49.66  Aligned_cols=54  Identities=17%  Similarity=0.261  Sum_probs=39.4

Q ss_pred             CCcEEEEEC-CEEeeeCccCceeEeccCC---ccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILG-GKNFTLTPTDYVLKVSIAS---SSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~-~~~~~i~~~~y~~~~~~g~---~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      .|+|+|.++ |..++|++.+|+++.....   ...|+.++..       ++.||+|+.+.++.|-
T Consensus       259 ~p~i~f~f~~g~~~~vp~~~~~~~~~~~~g~~~~~C~~~i~~-------~~~~ilG~~fl~~~y~  316 (342)
T 3pvk_A          259 SGDVVFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDV-------NDANILGDNFLRSAYI  316 (342)
T ss_dssp             CSEEEEEESTTCEEEEEGGGGEEC----------CEEESEEE-------CTTCEECHHHHTTEEE
T ss_pred             CCceEEEECCCCEEEEcHHHheeeccccCCCcCCeeEEEEee-------CCCeEeCHHHHhcEEE
Confidence            489999997 8999999999999753311   2579876653       3689999998888763

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...

Probab=91.24  E-value=0.076  Score=50.10  Aligned_cols=55  Identities=24%  Similarity=0.472  Sum_probs=40.9

Q ss_pred             CCcEEEEECCE------EeeeCccCceeEecc--CCcccee-cccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGK------NFTLTPTDYVLKVSI--ASSSMCL-SGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~------~~~i~~~~y~~~~~~--g~~~~c~-~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|.      .++|++.+|+++..-  +....|+ .++..      +...||+|+.+.++.|.
T Consensus       289 ~P~i~f~f~g~~~~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~------~~~~~ILG~~fl~~~yv  352 (395)
T 2qp8_A          289 FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQ------SSTGTVMGAVIMEGFYV  352 (395)
T ss_dssp             SCCEEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEE------ESSCEEECHHHHTTEEE
T ss_pred             CCcEEEEEccCCCCceEEEEECHHHhEeecccCCCCCceEEEEEecC------CCCcEEEChHHhCCeeE
Confidence            59999999886      699999999998753  1234796 34431      34679999998887763

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}

Probab=90.00  E-value=0.12  Score=48.35  Aligned_cols=55  Identities=22%  Similarity=0.525  Sum_probs=40.3

Q ss_pred             CCcEEEEECCE------EeeeCccCceeEec-cCCccceec-ccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGK------NFTLTPTDYVLKVS-IASSSMCLS-GFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~------~~~i~~~~y~~~~~-~g~~~~c~~-~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|.      .++|++.+|+++.. .+....|.. ++.      .+...||+|+.+.++.|.
T Consensus       278 ~P~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~C~~~~i~------~~~~~~ILG~~fl~~~yv  340 (383)
T 2ewy_A          278 FPKISIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGIS------PSTNALVIGATVMEGFYV  340 (383)
T ss_dssp             SCCEEEEEECSSTTEEEEEEECHHHHEEEECCCTTCSEEEEESEE------EESSCEEECHHHHTTEEE
T ss_pred             CCcEEEEECCCCCCceEEEEEChHHheeecccCCCCceeEEEEec------CCCCcEEEChHHhCCeeE
Confidence            59999999884      79999999999864 223456973 222      134679999998887763

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*

Probab=89.55  E-value=0.098  Score=50.40  Aligned_cols=56  Identities=27%  Similarity=0.543  Sum_probs=41.4

Q ss_pred             CCcEEEEECCE------EeeeCccCceeEeccCC--ccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGK------NFTLTPTDYVLKVSIAS--SSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~------~~~i~~~~y~~~~~~g~--~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|.      .++|++.+|+++.....  ...|.. +.   +. .+...||+|+.+.++.|.
T Consensus       342 ~P~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~-f~---~~-~~~~~~ILG~~fl~~~yv  405 (455)
T 3lpj_A          342 FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYK-FA---IS-QSSTGTVMGAVIMEGFYV  405 (455)
T ss_dssp             SCCEEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEE-EC---EE-EESSCEEECHHHHTTEEE
T ss_pred             CCcEEEEEcCCCcCceEEEEECHHHheEeccCCCCCCceEEE-Ee---cc-CCCCcEEEChHHhCCeEE
Confidence            59999999997      49999999999876432  246974 21   11 134679999998888763

>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}

Probab=88.72  E-value=0.47  Score=38.07  Aligned_cols=90  Identities=12%  Similarity=0.072  Sum_probs=48.8

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeeeecccCccCCCcEEEEEeCCce--EEEEEeEEEEE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGA--VSGYLSQDTLR   94 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs--~~G~~~~D~v~   94 (336)
                      ...+.+.+.+++..      ..+.+|||++.+-+..++..+-...+.......      ....|.|.  ..|.+..+.+.
T Consensus        24 ~~~~~v~v~InG~~------~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~------~~a~g~g~~~~~~~~~~~~i~   91 (148)
T 2i1a_A           24 VPMLYINIEINNYP------VKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFI------GEARGVGTGKIIGRIHQAQVK   91 (148)
T ss_dssp             CCCCEEEEEETTEE------EEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC-----------------CEEEEEEEEE
T ss_pred             cceEEEEEEECCEE------EEEEEECCCCccccCHHHHHHcCCCccCCcceE------EEEecCCCcccccEEEEEEEE
Confidence            34567777775432      256789999999887554321111111111111      02223332  45667778999


Q ss_pred             ECCeEEeceEEEEEEeeCCcccccccccccccCc
Q psy3214          95 IGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG  128 (336)
Q Consensus        95 ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg  128 (336)
                      +|+..++ ..|.+..  .       +.|||||+-
T Consensus        92 ig~~~~~-~~~~vl~--~-------~~d~iLG~d  115 (148)
T 2i1a_A           92 IETQYIP-CSFTVLD--T-------DIDVLIGLD  115 (148)
T ss_dssp             ETTEEEE-EEEEEEC--S-------SCSEEECHH
T ss_pred             ECCEEec-eeEEEec--C-------CCCeEecHH
Confidence            9998865 5665433  1       358999985

>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...

Probab=87.90  E-value=0.12  Score=48.85  Aligned_cols=56  Identities=23%  Similarity=0.531  Sum_probs=40.1

Q ss_pred             CCcEEEEECCE------EeeeCccCceeEeccCCc--cceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGK------NFTLTPTDYVLKVSIASS--SMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~------~~~i~~~~y~~~~~~g~~--~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|.      .++|++.+|+++..-...  ..|.. + .+.   .+...||+|+.+.++.|.
T Consensus       296 ~P~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~-~-~~~---~~~~~~ILG~~fl~~~yv  359 (402)
T 3vf3_A          296 FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYK-F-AIS---QSSTGTVMGAVIMEGFYV  359 (402)
T ss_dssp             SCCEEEEEECSSTTEEEEEEECHHHHEEECCCGGGTTEEEEE-E-CEE---EESSCEEECHHHHTTEEE
T ss_pred             CCceEEEEecCCCCceEEEEECHHHheehhccCCCCCceEEE-E-ecc---CCCCcEEEChHHhCCeEE
Confidence            59999999986      499999999998754321  36974 1 111   134679999988777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	336
d1hc1a3	255	b.1.18.3 (A:399-653) Arthropod hemocyanin, C-termi	1e-22
d1dpja_	329	b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha	6e-22
d1dpja_	329	b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha	3e-18
d1hrna_	337	b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho	4e-21
d1hrna_	337	b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho	2e-18
d1smra_	335	b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu	2e-20
d1smra_	335	b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu	2e-15
d1llaa3	249	b.1.18.3 (A:380-628) Arthropod hemocyanin, C-termi	3e-20
g1lya.1	338	b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens)	4e-20
g1lya.1	338	b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens)	2e-15
d1qdma2	337	b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase	1e-19
d1qdma2	337	b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase	7e-15
d3psga_	370	b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI	1e-18
d3psga_	370	b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI	1e-15
g1b5f.1	326	b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin	2e-18
g1b5f.1	326	b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin	2e-13
d1wkra_	340	b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo	2e-17
d1wkra_	340	b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo	2e-14
d1miqa_	373	b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e	2e-17
d1miqa_	373	b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e	8e-11
g1htr.1	372	b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens	1e-16
g1htr.1	372	b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens	2e-16
d1am5a_	324	b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo	1e-16
d1am5a_	324	b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo	8e-16
d2bjua1	329	b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad	5e-16
d2qp8a1	387	b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum	3e-15
d2qp8a1	387	b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum	2e-11
d1oewa_	330	b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung	3e-15
d1oewa_	330	b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung	4e-10
d1t6ex_	381	b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr	1e-14
d1t6ex_	381	b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr	7e-11
d1bxoa_	323	b.50.1.2 (A:) Acid protease {Fungus (Penicillium j	2e-14
d1bxoa_	323	b.50.1.2 (A:) Acid protease {Fungus (Penicillium j	5e-09
d2apra_	325	b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus	5e-14
d2apra_	325	b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus	4e-10
d3cmsa_	323	b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos	1e-13
d3cmsa_	323	b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos	5e-13
d1mppa_	357	b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]	2e-13
d1mppa_	357	b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]	9e-13
d1izea_	323	b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o	1e-12
d1izea_	323	b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o	2e-09
d1j71a_	334	b.50.1.2 (A:) Acid protease {Yeast (Candida tropic	1e-12
d1j71a_	334	b.50.1.2 (A:) Acid protease {Yeast (Candida tropic	3e-08
d1eaga_	342	b.50.1.2 (A:) Acid protease {Yeast (Candida albica	4e-12
d1eaga_	342	b.50.1.2 (A:) Acid protease {Yeast (Candida albica	1e-10
d1hc1a2	263	a.86.1.1 (A:136-398) Arthropod hemocyanin {Spiny l	3e-04

>d1hc1a3 b.1.18.3 (A:399-653) Arthropod hemocyanin, C-terminal domain {Spiny lobster (Panulirus interruptus) [TaxId: 6735]} Length = 255

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arthropod hemocyanin, C-terminal domain
domain: Arthropod hemocyanin, C-terminal domain
species: Spiny lobster (Panulirus interruptus) [TaxId: 6735]

 Score = 93.0 bits (231), Expect = 1e-22
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 10/112 (8%)

Query: 229 LEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEV-YVRDKELTEEYNI---PYHIQHED 284
           LE+ G+ +  + I  +      L TF+   +   +  V   E  E+  I    + + H +
Sbjct: 8   LEFSGMVVNGVAIDGE------LITFFDEFQYSLINAVDSGENIEDVEINARVHRLNHNE 61

Query: 285 FKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH 336
           F Y+IT+ NN++  +    RIFL    D  G  L L   R   IELDKF   
Sbjct: 62  FTYKITMSNNNDGERLATFRIFLCPIEDNNGITLTLDEARWFCIELDKFFQK 113

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

 Score = 92.3 bits (228), Expect = 6e-22
 Identities = 64/132 (48%), Positives = 79/132 (59%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           + NGT+FAI+YG+G++ GY+SQDTL IGDLTI  Q F EA  EPG TF   KFDGILG+G
Sbjct: 66  KANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLG 125

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELESRIE 188
           YD I+VD V PPFYN IQQ LL++  F FYL   + +    GE       + K       
Sbjct: 126 YDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITW 185

Query: 189 NKYQLPEYDHVG 200
              +   Y  V 
Sbjct: 186 LPVRRKAYWEVK 197

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

 Score = 81.9 bits (201), Expect = 3e-18
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P++     G NFT+ P DY L+VS      C+S    MD P P GP+ I+GD F+ K+Y
Sbjct: 258 LPDLIFNFNGYNFTIGPYDYTLEVS----GSCISAITPMDFPEPVGPLAIVGDAFLRKYY 313

Query: 61  TVFDMDNNQ 69
           +++D+ NN 
Sbjct: 314 SIYDLGNNA 322

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 4e-21
 Identities = 35/69 (50%), Positives = 43/69 (62%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P++   LGGK +TLT  DYV + S +S  +C      MDIPPP GP W LG  FI KFY
Sbjct: 262 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFY 321

Query: 61  TVFDMDNNQ 69
           T FD  NN+
Sbjct: 322 TEFDRRNNR 330

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 2e-18
 Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 1/113 (0%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           + NGT+  +RY +G VSG+LSQD + +G +T+    FGE  + P   F+ A+FDG++GMG
Sbjct: 70  KHNGTELTLRYSTGTVSGFLSQDIITVGGITVTQM-FGEVTEMPALPFMLAEFDGVVGMG 128

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
           +   A+  V P F NII Q +L+++VF FY NR +    + G   +    DP+
Sbjct: 129 FIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQ 181

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.5 bits (218), Expect = 2e-20
 Identities = 33/69 (47%), Positives = 44/69 (63%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P++   LGG+ +TL+ TDYVL+       +C      MDIPPP GP+W+LG  FI KFY
Sbjct: 260 LPDISFNLGGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVWVLGATFIRKFY 319

Query: 61  TVFDMDNNQ 69
           T FD  NN+
Sbjct: 320 TEFDRHNNR 328

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.9 bits (180), Expect = 2e-15
 Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 1/109 (0%)

Query: 58  KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
             Y   D  +  +NG  F I YGSG V G+LSQD++ +G +T+    FGE  + P   F+
Sbjct: 59  SLYESSDSSSYMENGDDFTIHYGSGRVKGFLSQDSVTVGGITVTQT-FGEVTQLPLIPFM 117

Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK 166
            A+FDG+LGMG+   AV GV P F +I+ Q +L++ VF  Y NR     
Sbjct: 118 LAQFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNRGPHLL 166

>d1llaa3 b.1.18.3 (A:380-628) Arthropod hemocyanin, C-terminal domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]} Length = 249

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arthropod hemocyanin, C-terminal domain
domain: Arthropod hemocyanin, C-terminal domain
species: Horseshoe crab (Limulus polyphemus) [TaxId: 6850]

 Score = 86.1 bits (213), Expect = 3e-20
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 7/111 (6%)

Query: 229 LEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIP---YHIQHEDF 285
           L +P ++++ + +  +    + + TF +   ++  +  +       +I    YH+ HE F
Sbjct: 7   LNFPDIQVQDVTLHARV--DNVVHTFMREQELELKHGIN--PGNARSIKARYYHLDHEPF 62

Query: 286 KYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH 336
            Y + ++NNS   K   +RIFL  K D  GNE+     R   IELDKF+  
Sbjct: 63  SYAVNVQNNSASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDKFKTD 113

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 86.3 bits (212), Expect = 1e-19
 Identities = 36/69 (52%), Positives = 51/69 (73%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           MP+++  +GGK F L P +Y+LKV   +++ C+SGF  MDIPPP GP+WILGDVF+G ++
Sbjct: 262 MPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYH 321

Query: 61  TVFDMDNNQ 69
           TVFD    +
Sbjct: 322 TVFDYGKLR 330

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 72.4 bits (176), Expect = 7e-15
 Identities = 49/97 (50%), Positives = 71/97 (73%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           +KNG   AI+YG+G+++GY S+D++ +GDL +K+Q F EA KEPG TF+ AKFDGILG+G
Sbjct: 69  KKNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLG 128

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
           +  I+V    P +Y +I+Q L+   VF F+LNR+  E
Sbjct: 129 FKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDE 165

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 83.9 bits (206), Expect = 1e-18
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P++   + G  + L+P+ Y+L+        C SGF GMD+P  +G +WILGDVFI ++Y
Sbjct: 299 LPDIVFTIDGVQYPLSPSAYILQDD----DSCTSGFEGMDVPTSSGELWILGDVFIRQYY 354

Query: 61  TVFDMDNNQ 69
           TVFD  NN+
Sbjct: 355 TVFDRANNK 363

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 75.0 bits (183), Expect = 1e-15
 Identities = 34/93 (36%), Positives = 57/93 (61%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
           +    + +I YG+G+++G L  DT+++G ++  NQ+FG +  EPG     A FDGILG+ 
Sbjct: 109 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 168

Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
           Y +I+  G  P F N+  Q L+ +++F  YL+ 
Sbjct: 169 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 201

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

 Score = 80.0 bits (196), Expect = 2e-17
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 12/112 (10%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
                + ++ YGSG+ SG    DT+ +G LTI  Q  G A ++ GF       DGILG+G
Sbjct: 53  SATSDKVSVTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGFDG----VDGILGVG 108

Query: 129 YDNIAVDGVEPP--------FYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
             ++ V  + P           N+  Q  +  N+         +E   NGE+
Sbjct: 109 PVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGEL 160

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

 Score = 71.1 bits (173), Expect = 2e-14
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSI-----ASSSMCLSGFAGMDIPPPAGPIWILGDVF 55
           + ++   +GG+ F LT    +   ++      S+S        +      G  +I G  F
Sbjct: 253 LQSLFFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTF 312

Query: 56  IGKFYTVFDMDNNQ 69
           + +FY+V+D  N +
Sbjct: 313 LERFYSVYDTTNKR 326

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

 Score = 80.0 bits (196), Expect = 2e-17
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           MP ++       +TL P  Y+  +     ++C+     +DI       +ILGD F+ K++
Sbjct: 300 MPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDID---SNTFILGDPFMRKYF 356

Query: 61  TVFDMDNNQ 69
           TVFD D   
Sbjct: 357 TVFDYDKES 365

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

 Score = 60.4 bits (145), Expect = 8e-11
 Identities = 34/173 (19%), Positives = 70/173 (40%), Gaps = 4/173 (2%)

Query: 58  KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIK-EPGFTF 116
             Y      + +K+GT+  I YGSG V G+ S+D + +G L++  +        +    +
Sbjct: 102 NLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPIY 161

Query: 117 VAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPS 176
            + +FDGILG+G+ ++++  ++P    +  Q  ++  +F FYL  ++          I  
Sbjct: 162 SSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEE 221

Query: 177 AHDPKELES---RIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYA 226
                 +       +  +Q+    H G         +       I A ++   
Sbjct: 222 KFYEGNITYEKLNHDLYWQIDLDVHFGKQTMEKANVIVDSGTTTITAPSEFLN 274

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

 Score = 77.3 bits (189), Expect = 1e-16
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P++   + G    L P+ Y+        + C SG     +P     +WI GDVF+  +Y
Sbjct: 253 LPDITFTINGVKQPLPPSAYIEG----DQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYY 308

Query: 61  TVFDMDNNQ 69
           T++D  NN+
Sbjct: 309 TIYDRTNNK 317

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

 Score = 75.0 bits (183), Expect = 8e-16
 Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 3/109 (2%)

Query: 58  KFYTVFDMDNN---QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF 114
             +  F    +    + G    + YG+G + G L QDT+ +G  +  NQ  GE+  EPG 
Sbjct: 51  SNHNKFKPRQSSTYVETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGP 110

Query: 115 TFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYN 163
              AA FDGILG+ Y +IA  G  P F N+  Q L+EK++F FYL+   
Sbjct: 111 FQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGG 159

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

 Score = 75.5 bits (184), Expect = 5e-16
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P  +       +TL P  Y+  +      +C+    G+D P P    +ILGD F+ K++
Sbjct: 254 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 310

Query: 61  TVFDMDNNQ 69
           TVFD DN+ 
Sbjct: 311 TVFDYDNHS 319

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 3e-15
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 3/98 (3%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIG--DLTIKNQVFGEAIKEPGFTFVAAKFDGILG 126
           +       + Y  G   G L  D + I                +   F    + ++GILG
Sbjct: 63  RDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILG 122

Query: 127 MGYDNI-AVDGVEPPFYNIIQQKLLEKNVFGFYLNRYN 163
           + Y  I   D    PF++ + ++    N+F   L    
Sbjct: 123 LAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAG 160

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 2e-11
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 7/70 (10%)

Query: 2   PNVDIILGGKNFTLTPTDYVLKVSIA--SSSMCLSGFAGMDIPPPAGPIWILGDVFIGKF 59
              ++       T+ P  Y+  V     S   C            +    ++G V +  F
Sbjct: 289 LMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFA-----ISQSSTGTVMGAVIMEGF 343

Query: 60  YTVFDMDNNQ 69
           Y VFD    +
Sbjct: 344 YVVFDRARKR 353

>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Length = 330

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Endothiapepsin
species: Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]

 Score = 73.1 bits (178), Expect = 3e-15
 Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 6/78 (7%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P+    +G     +             SS C  G            I I GDV +   +
Sbjct: 259 LPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQ----SSAGIGINIFGDVALKAAF 314

Query: 61  TVFDMDNNQKNGTQFAIR 78
            VF+       G  FA +
Sbjct: 315 VVFNGATTPTLG--FASK 330

>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Length = 330

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Endothiapepsin
species: Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]

 Score = 57.6 bits (138), Expect = 4e-10
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 70  KNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
            +G  ++I YG G + SG +  DT+ +G LT+  Q    A K        +  DG+LG+ 
Sbjct: 70  LSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLA 129

Query: 129 YDNIAVDGVE--PPFYNIIQQKLLEKNVFGFYLNRYNT 164
           +  +          F++  +   L+  VF   L  +  
Sbjct: 130 FSTLNTVSPTQQKTFFDNAKA-SLDSPVFTADLGYHAP 166

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 72.0 bits (175), Expect = 1e-14
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 1   MPNVDIIL-GGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKF 59
           +PNV + L GG ++T+T  + ++ V   ++ +      G+       P  ILG   +  F
Sbjct: 297 VPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDF 356

Query: 60  YTVFDMDNNQ 69
              FDM+  +
Sbjct: 357 VLDFDMEKKR 366

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 60.4 bits (145), Expect = 7e-11
 Identities = 18/142 (12%), Positives = 32/142 (22%), Gaps = 15/142 (10%)

Query: 66  DNNQKNGTQFAIRYGSGAVS-GYLSQDTLRIGDLTIKNQVFGEAIK-------EPGFTFV 117
           D + K  T +     SGA + G LS              V    +              +
Sbjct: 74  DKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASL 133

Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSA 177
                G+ G+    +            +       N F   L          G  P+P  
Sbjct: 134 PRGSTGVAGLANSGL-------ALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWP 186

Query: 178 HDPKELESRIENKYQLPEYDHV 199
              + +              ++
Sbjct: 187 QFTQSMPYTPLVTKGGSPAHYI 208

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

 Score = 70.8 bits (172), Expect = 2e-14
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P+  + + G   T+  +      S    S CL G              I GD+F+   Y
Sbjct: 253 LPDFSVSISGYTATVPGSLINYGPS-GDGSTCLGGIQ----SNSGIGFSIFGDIFLKSQY 307

Query: 61  TVFDMDNNQ 69
            VFD D  Q
Sbjct: 308 VVFDSDGPQ 316

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

 Score = 54.2 bits (129), Expect = 5e-09
 Identities = 22/167 (13%), Positives = 52/167 (31%), Gaps = 12/167 (7%)

Query: 69  QKNGTQFAIRYGSGA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           + +G  ++I YG G+  SG +  D++ +G +T   Q    A +           DG+LG+
Sbjct: 65  ELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGL 124

Query: 128 GYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELES 185
            + +I       +  F++ ++  L +        ++                        
Sbjct: 125 AFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQQPGVYDFGFIDSSKYTGSLTYTGV 184

Query: 186 RIENKYQLPEYDHVGDGCS---------ASYTEMQQWTNNIIEAINQ 223
                +     D    G            + T +    ++++     
Sbjct: 185 DNSQGFWSFNVDSYTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYS 231

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

 Score = 69.6 bits (169), Expect = 5e-14
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
              +   + G +F ++P   V +        C++GF   +         I+GD F+   Y
Sbjct: 257 FKPLVFSINGASFQVSPDSLVFEEF---QGQCIAGFGYGN-----WGFAIIGDTFLKNNY 308

Query: 61  TVFDMDNNQ 69
            VF+    +
Sbjct: 309 VVFNQGVPE 317

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

 Score = 57.6 bits (138), Expect = 4e-10
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 57  GKFYTVFDMDNN---QKNGTQFAIRYGSGA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEP 112
           G   T +D + +   Q +G  ++I YG G+  SG L++D + +G L IK Q    A +E 
Sbjct: 52  GSGQTKYDPNQSSTYQADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREA 111

Query: 113 GFTFVAAKFDGILGMGYDNIAV-DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK 166
              F +   DG+LG+G+D I    GV+ P  N+I Q L+ + +FG YL +     
Sbjct: 112 AS-FASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNGG 165

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.5 bits (166), Expect = 1e-13
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           MP V   + GK + LTP+ Y  +        C SGF   +        WILGDVFI ++Y
Sbjct: 256 MPTVVFEINGKMYPLTPSAYTSQ----DQGFCTSGFQSEN----HSQKWILGDVFIREYY 307

Query: 61  TVFDMDNNQ 69
           +VFD  NN 
Sbjct: 308 SVFDRANNL 316

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 5e-13
 Identities = 33/105 (31%), Positives = 58/105 (55%)

Query: 57  GKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTF 116
            + +        Q  G   +I YG+G++ G L  DT+ + ++    Q  G + +EPG  F
Sbjct: 55  HQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFF 114

Query: 117 VAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
             A+FDGILGM Y ++A +   P F N++ + L+ +++F  Y++R
Sbjct: 115 TYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDR 159

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

 Score = 68.1 bits (165), Expect = 2e-13
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 69  QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKF-----DG 123
           ++      I YG+G  +G   +D++ +G  T+K Q         G T   +       DG
Sbjct: 68  KETDYNLNITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDG 127

Query: 124 ILGMGYDNIAV------DGVEPPFYNIIQQKLLEKNVFGFYLNRYNT 164
           I G  Y +         D       N+ +Q L+   VF  Y+N  + 
Sbjct: 128 IFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDG 174

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

 Score = 66.2 bits (160), Expect = 9e-13
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 2   PNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMD-IPPPAGPIWILGDVFIGKFY 60
               ++L     +    D  + +S     +  SG   M  + P  G  +I+G++F+  F 
Sbjct: 276 TTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFV 335

Query: 61  TVFDMDNNQ 69
            V+D   N+
Sbjct: 336 NVYDFGKNR 344

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

 Score = 65.4 bits (158), Expect = 1e-12
 Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 6/69 (8%)

Query: 1   MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
           +P+  + +G    T+             +     G              I GDVF+   Y
Sbjct: 254 LPDFSVTIGDYTATVPGEYISFADV--GNGQTFGGIQ----SNSGIGFSIFGDVFLKSQY 307

Query: 61  TVFDMDNNQ 69
            VFD    +
Sbjct: 308 VVFDASGPR 316

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

 Score = 56.1 bits (134), Expect = 2e-09
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 2/114 (1%)

Query: 69  QKNGTQFAIRYGS-GAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           + +G  ++I YG   + SG + +D + +G ++  +Q    A K           DG+LG+
Sbjct: 65  KIDGATWSISYGDGSSASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGL 124

Query: 128 GYDNIAVDGVEPPFYNIIQ-QKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDP 180
            + +I      P        +  L + +F   L          G          
Sbjct: 125 AFSSINTVQPTPQKTFFDNVKSSLSEPIFAVALKHNAPGVYDFGYTDSSKYTGS 178

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 65.3 bits (158), Expect = 1e-12
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 9/66 (13%)

Query: 4   VDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVF 63
           V     G   T+  ++ +LK S   SS+C  G +  D         ILGD F+ + Y V+
Sbjct: 261 VFNFDQGVKITVPLSELILKDS--DSSICYFGISRNDA-------NILGDNFLRRAYIVY 311

Query: 64  DMDNNQ 69
           D+D+  
Sbjct: 312 DLDDKT 317

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 52.2 bits (124), Expect = 3e-08
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 69  QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           Q     F+I YG   +  G   +DT+  G ++IKNQ F +               GI+G+
Sbjct: 74  QNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTTSV-------DQGIMGI 126

Query: 128 GYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNRYN 163
           G+       +  +     + +Q ++ KN +  YLN  +
Sbjct: 127 GFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSED 164

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

 Score = 64.2 bits (155), Expect = 4e-12
 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 7   ILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMD 66
                  ++  +++   +           +    +        ILGD F+   Y V+D+D
Sbjct: 266 FSKNAKISVPASEFAASLQ----GDDGQPYDKCQLLFDVNDANILGDNFLRSAYIVYDLD 321

Query: 67  NNQ 69
           +N+
Sbjct: 322 DNE 324

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

 Score = 59.6 bits (143), Expect = 1e-10
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 69  QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
           Q   T F I YG G +  G L +DT+  G ++IKNQV  +           +   GILG+
Sbjct: 74  QDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADV-------DSTSIDQGILGV 126

Query: 128 GYDNIAVDGVEPPF-YNIIQQKLLEKNVFGFYLNRYN 163
           GY      G        + +Q ++ KN +  YLN  +
Sbjct: 127 GYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPD 163

>d1hc1a2 a.86.1.1 (A:136-398) Arthropod hemocyanin {Spiny lobster (Panulirus interruptus) [TaxId: 6735]} Length = 263

class: All alpha proteins
fold: Di-copper centre-containing domain
superfamily: Di-copper centre-containing domain
family: Hemocyanin middle domain
domain: Arthropod hemocyanin
species: Spiny lobster (Panulirus interruptus) [TaxId: 6735]

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 22/104 (21%)

Query: 159 LNRYNTEKLANG---------EVPIPSAHDPK-------ELESRIENKYQLPEYDHVGDG 202
             R++ E+L+N          +  I     P        E   R +N     + D V   
Sbjct: 93  TARFDFERLSNWLDPVDELHWDRIIREGFAPLTSYKYGGEFPVRPDN-IHFEDVDGV--- 148

Query: 203 CSASYTEMQQWTNNIIEAINQGYAVTLEYPGVELKSLRILNKQG 246
             A   +++   + I EAI+ GY    +   ++++  + +   G
Sbjct: 149 --AHVHDLEITESRIHEAIDHGYITDSDGHTIDIRQPKGIELLG 190

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	336
d1hc1a3	255	Arthropod hemocyanin, C-terminal domain {Spiny lob	99.97
d1llaa3	249	Arthropod hemocyanin, C-terminal domain {Horseshoe	99.97
d3psga_	370	Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}	99.96
g1htr.1	372	Pepsin(ogen) {Human (Homo sapiens), progastricsin	99.95
d1dpja_	329	Acid protease {Baker's yeast (Saccharomyces cerevi	99.95
d1miqa_	373	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	99.94
d2apra_	325	Acid protease {Bread mold (Rhizopus chinensis) [Ta	99.94
d1am5a_	324	Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId:	99.94
d1oewa_	330	Endothiapepsin {Chestnut blight fungus (Endothia p	99.94
d1smra_	335	Chymosin (synonym: renin) {Mouse (Mus musculus) [T	99.94
d1j71a_	334	Acid protease {Yeast (Candida tropicalis) [TaxId:	99.93
d1mppa_	357	Pepsin {Mucor pusillus [TaxId: 4840]}	99.93
d1wkra_	340	Acid protease {Irpex lacteus (Polyporus tulipifera	99.92
d1hrna_	337	Chymosin (synonym: renin) {Human (Homo sapiens) [T	99.92
d2qp8a1	387	beta-secretase (memapsin) {Human (Homo sapiens) [T	99.91
d1eaga_	342	Acid protease {Yeast (Candida albicans) [TaxId: 54	99.91
d1izea_	323	Acid protease {Fungus (Aspergillus oryzae) [TaxId:	99.91
d2bjua1	329	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	99.9
g1lya.1	338	Cathepsin D {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1qdma2	337	Plant acid proteinase, phytepsin {Barley (Hordeum	99.89
g1b5f.1	326	Plant acid proteinase, phytepsin {Cynara carduncul	99.88
d1bxoa_	323	Acid protease {Fungus (Penicillium janthinellum),	99.88
d3cmsa_	323	Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId	99.86
d1t6ex_	381	Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu	99.7
d1miqa_	373	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	97.11
d1hrna_	337	Chymosin (synonym: renin) {Human (Homo sapiens) [T	97.07
d3psga_	370	Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}	97.02
d1smra_	335	Chymosin (synonym: renin) {Mouse (Mus musculus) [T	96.77
g1lya.1	338	Cathepsin D {Human (Homo sapiens) [TaxId: 9606]}	96.75
d1dpja_	329	Acid protease {Baker's yeast (Saccharomyces cerevi	96.32
d1qdma2	337	Plant acid proteinase, phytepsin {Barley (Hordeum	96.26
g1htr.1	372	Pepsin(ogen) {Human (Homo sapiens), progastricsin	96.15
g1b5f.1	326	Plant acid proteinase, phytepsin {Cynara carduncul	96.01
d2bjua1	329	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	95.26
d1oewa_	330	Endothiapepsin {Chestnut blight fungus (Endothia p	94.82
d1am5a_	324	Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId:	94.61
d1bxoa_	323	Acid protease {Fungus (Penicillium janthinellum),	94.58
d1wkra_	340	Acid protease {Irpex lacteus (Polyporus tulipifera	94.21
d2apra_	325	Acid protease {Bread mold (Rhizopus chinensis) [Ta	93.36
d1izea_	323	Acid protease {Fungus (Aspergillus oryzae) [TaxId:	92.46
d3cmsa_	323	Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId	92.43
d1j71a_	334	Acid protease {Yeast (Candida tropicalis) [TaxId:	90.64
d1t6ex_	381	Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu	90.52

>d1hc1a3 b.1.18.3 (A:399-653) Arthropod hemocyanin, C-terminal domain {Spiny lobster (Panulirus interruptus) [TaxId: 6735]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arthropod hemocyanin, C-terminal domain
domain: Arthropod hemocyanin, C-terminal domain
species: Spiny lobster (Panulirus interruptus) [TaxId: 6735]

Probab=99.97  E-value=1.1e-32  Score=245.80  Aligned_cols=104  Identities=32%  Similarity=0.496  Sum_probs=92.1

Q ss_pred             eeecCCCeEEeEEEEeccCCCCCcceeeeeeeeccccccccc-cccccccc---ccccCCCCcEEEEEEecCCCceeeEE
Q psy3214         227 VTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDK-ELTEEYNI---PYHIQHEDFKYEITIENNSNETKTGI  302 (336)
Q Consensus       227 ~~L~~pgv~i~~v~v~~~~gp~~~l~T~~~~~~~dl~~~~~~-~~~~~~~~---~~~L~h~pF~y~i~v~n~s~~~~~~~  302 (336)
                      ++|.+|||+|++|+|.      ++|.|||+.+++|++|+.+. +...++.+   ++|||||||+|+|+|+|+|+++++|+
T Consensus         6 eeL~fpGV~I~~V~Vd------~~L~Tyf~~~~~dl~n~~~~~~~~~~~~v~ar~~rLnHkpF~Y~i~V~~~s~~~~~~v   79 (255)
T d1hc1a3           6 DNLEFSGMVVNGVAID------GELITFFDEFQYSLINAVDSGENIEDVEINARVHRLNHNEFTYKITMSNNNDGERLAT   79 (255)
T ss_dssp             HHHCCSSEEEEEEEEE------SCCEEEECCEEEEGGGGSCCCSSCCCCCCEEEECCEEECCCEEEEEEEECSSSCCEEE
T ss_pred             HHCcCCCEEEEEEEEC------CeeeeeeeeeecchhhcccccccccceEEEEEEeecCCCCEEEEEEEEeCCCCceEEE
Confidence            7899999999999992      38999999999999986432 22233333   89999999999999999999999999


Q ss_pred             EEEEEceecCCCCCcccccccccceEEeeeeeeC
Q psy3214         303 MRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH  336 (336)
Q Consensus       303 vrifl~Pk~d~~g~~~~~~~~r~~~ielD~f~~~  336 (336)
                      |||||||||||+|++|+|+|||++|||||||+++
T Consensus        80 VRIFL~PkyD~~G~~l~l~e~r~~~iElDkF~~~  113 (255)
T d1hc1a3          80 FRIFLCPIEDNNGITLTLDEARWFCIELDKFFQK  113 (255)
T ss_dssp             EEEEEECCCCSSSCCCCSSTTTTTCEEEEEEEEE
T ss_pred             EEEEeCccccCCCCCCCHHHhhhheEEeeEEEEE
Confidence            9999999999999999999999999999999974

>d1llaa3 b.1.18.3 (A:380-628) Arthropod hemocyanin, C-terminal domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arthropod hemocyanin, C-terminal domain
domain: Arthropod hemocyanin, C-terminal domain
species: Horseshoe crab (Limulus polyphemus) [TaxId: 6850]

Probab=99.97  E-value=3.6e-32  Score=241.32  Aligned_cols=106  Identities=29%  Similarity=0.502  Sum_probs=92.6

Q ss_pred             eeecCCCeEEeEEEEeccCCCCCcceeeeeeeeccccccccccccccccc---ccccCCCCcEEEEEEecCCCceeeEEE
Q psy3214         227 VTLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNI---PYHIQHEDFKYEITIENNSNETKTGIM  303 (336)
Q Consensus       227 ~~L~~pgv~i~~v~v~~~~gp~~~l~T~~~~~~~dl~~~~~~~~~~~~~~---~~~L~h~pF~y~i~v~n~s~~~~~~~v  303 (336)
                      ++|.+|||+|++|+|...  ..|.|.|||+.+++|++|+.+.  ..+..+   ++|||||||+|+|+|+|+++++++|+|
T Consensus         5 eeL~fpGV~I~~V~vd~~--~~~~L~Tyfe~~d~dl~n~l~~--~~~~~v~ar~~rLNHkpF~y~i~V~s~~~~~~~~vV   80 (249)
T d1llaa3           5 DVLNFPDIQVQDVTLHAR--VDNVVHTFMREQELELKHGINP--GNARSIKARYYHLDHEPFSYAVNVQNNSASDKHATV   80 (249)
T ss_dssp             HHHCCTTEEEEEEEEESS--STTEEEEEEEEEEEECTTTSCC--TTCSCEEEEEEEEEECCCEEEEEEEECSSSCEEEEE
T ss_pred             HHCcCCCEEEEEEEEecc--cCceEEEeeeeeeeEeecCccc--CCCeEEEEEEeecCCCceEEEEEEEcCCCCccEEEE
Confidence            789999999999998432  2367999999999999986532  233332   799999999999999999888999999


Q ss_pred             EEEEceecCCCCCcccccccccceEEeeeeeeC
Q psy3214         304 RIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH  336 (336)
Q Consensus       304 rifl~Pk~d~~g~~~~~~~~r~~~ielD~f~~~  336 (336)
                      |||||||||++|++++|+|+|++|||||+|+++
T Consensus        81 RiFLgPkyD~~G~~~~l~e~r~~~iElD~F~~~  113 (249)
T d1llaa3          81 RIFLAPKYDELGNEIKADELRRTAIELDKFKTD  113 (249)
T ss_dssp             EEEEEESBCTTSCBCCHHHHHHHCEEEEEEEEE
T ss_pred             EEEeCccCcCCCCCCCHHHhhhheEEeeEEEEE
Confidence            999999999999999999999999999999974

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=2.1e-29  Score=238.52  Aligned_cols=199  Identities=24%  Similarity=0.395  Sum_probs=168.2

Q ss_pred             cCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeEE
Q psy3214          18 TDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQD   91 (336)
Q Consensus        18 ~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D   91 (336)
                      ..|.+++.+|+|+|-+    .+.+||||+++||++.      |..+..|+|++|+||+..++.|.+.||+|+++|.++.|
T Consensus        56 ~~Y~~~i~iGtP~Q~~----~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~~~~~~~Yg~Gs~~G~~~~d  131 (370)
T d3psga_          56 TEYFGTIGIGTPAQDF----TVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYD  131 (370)
T ss_dssp             CCEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEEEEEE
T ss_pred             CEEEEEEEEcCCCeEE----EEEEeCCCCCeEEECccCCCcccccccccCCCcccccccCCCcEEEEeCCceEEEEEEEE
Confidence            5799999999999864    7889999999999975      34677899999999999999999999999999999999


Q ss_pred             EEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCce
Q psy3214          92 TLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGE  171 (336)
Q Consensus        92 ~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G~  171 (336)
                      ++.+++++++++.||++....+..+.....+||+|||++..+.....+++++|+++++|++++||+|+.+ +  ...+|+
T Consensus       132 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~-~--~~~~g~  208 (370)
T d3psga_         132 TVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS-N--DDSGSV  208 (370)
T ss_dssp             EEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC--------CEE
T ss_pred             EEeeeceeeeeeEEEEEeeccCceecccccccccccccCcccccCCCchhhhhhhhcccccceeEEEeec-C--CCCCce
Confidence            9999999999999999998877666777889999999999888888999999999999999999999998 3  345899


Q ss_pred             EEecCCCCCcccccccceeEecCC-cc------cc--------CCC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         172 VPIPSAHDPKELESRIENKYQLPE-YD------HV--------GDG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       172 l~f~GGiD~~~~~G~l~~~~~~~~-~~------~~--------~~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      |+| ||+|++++.|+++|++.... +|      ..        ..+   ..++++++.+.+..+++++.+.
T Consensus       209 l~~-Gg~d~~~~~~~l~~~p~~~~~~w~v~~~~i~v~g~~~~~~~~~~aiiDSGTs~~~lp~~~~~~i~~~  278 (370)
T d3psga_         209 VLL-GGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSD  278 (370)
T ss_dssp             EEE-TCCCGGGBSSCCEEEECSEETTEEEEECEEESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHH
T ss_pred             Eec-CCcCchhcccceeEEeecccceEEEEEeeEEeCCeEEecCCCccEEEecCCceEeCCHHHHHHHHHH
Confidence            999 99999999999999743221 11      11        111   3347888999999999888775

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

Probab=99.95  E-value=1.3e-27  Score=221.46  Aligned_cols=203  Identities=35%  Similarity=0.590  Sum_probs=170.1

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQ   90 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~   90 (336)
                      ...|++++.+|+|+|.+    .+.+||||+++||++.      |..++.|+|++|+|++..++.+.+.|++|+++|.++.
T Consensus        12 ~~~Y~~~i~iGtP~q~~----~~~iDTGSs~~Wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~~~~~~~y~~gs~~G~~~~   87 (329)
T d1dpja_          12 NAQYYTDITLGTPPQNF----KVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTGSLEGYISQ   87 (329)
T ss_dssp             TTEEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCEEEEEEEEeCCCeEE----EEEEECCcccEEEECCCCCCccccCCCcCCcccCCceeECCeeEEEEccCceEEEEEEE
Confidence            45699999999998864    7888999999999975      3456799999999999999999999999999999999


Q ss_pred             EEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCc
Q psy3214          91 DTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG  170 (336)
Q Consensus        91 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G  170 (336)
                      |+|++++.+++++.|+++....+..+.....+||+|||++..+.......+++|..+++|++++||+||.+.......+|
T Consensus        88 D~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Glg~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~~~~g  167 (329)
T d1dpja_          88 DTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGG  167 (329)
T ss_dssp             EEEEETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSE
T ss_pred             EEEEecceEEeeEEEEEEeeccCccccccccccccccccCccccccCCchhhhHhhccCcccceEEEEEEecCCCcCCCC
Confidence            99999999999999999998876667777889999999998887777889999999999999999999987322345779


Q ss_pred             eEEecCCCCCcccccccceeEecCCc-cc-------------cCCC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         171 EVPIPSAHDPKELESRIENKYQLPEY-DH-------------VGDG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       171 ~l~f~GGiD~~~~~G~l~~~~~~~~~-~~-------------~~~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      .|+| ||+|+++|.|+++|++..... +.             ..++   ..++++++.+.+..+++++.+.
T Consensus       168 ~l~~-Gg~d~~~~~~~~~~~~~~~~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~  237 (329)
T d1dpja_         168 EATF-GGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAE  237 (329)
T ss_dssp             EEEE-SSCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHH
T ss_pred             ceEC-CCCchhhccCceeEecccccceeEEEEeeEEECCeEeeeeecccccCcccceeeCCHHHHHHHHHH
Confidence            9999 999999999999987432211 10             0111   2346788888888888888765

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

Probab=99.94  E-value=2.9e-27  Score=223.33  Aligned_cols=199  Identities=19%  Similarity=0.348  Sum_probs=166.9

Q ss_pred             cCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeEE
Q psy3214          18 TDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQD   91 (336)
Q Consensus        18 ~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D   91 (336)
                      ..|+.++.+|+|+|.    +.+.+||||+++||++.      |..++.|+|++|+||+..++.+.+.|++|+++|.++.|
T Consensus        60 ~~Y~~~I~iGtP~Q~----~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~SsT~~~~~~~~~~~y~~G~~~G~~~~D  135 (373)
T d1miqa_          60 IMFYGEGEVGDNHQK----FMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGTVKGFFSKD  135 (373)
T ss_dssp             EEEECCCEETTTTEE----CCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CEEEEEEEECCCCEE----EEEEEECCchheEEECCCCCCccccCCCccCCCCCCceeECCccEEEEeCCcEEEEEEEEE
Confidence            469999999999885    47889999999999974      34678999999999999999999999999999999999


Q ss_pred             EEEECCeEEeceEEEEEEeeCC-cccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCc
Q psy3214          92 TLRIGDLTIKNQVFGEAIKEPG-FTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG  170 (336)
Q Consensus        92 ~v~ig~~~v~~~~fg~~~~~~~-~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G  170 (336)
                      +|++++++++++.|+++..... ..+....++|++|++++........+++.++++++.+++++||+++.+ +  ....|
T Consensus       136 ~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~-~--~~~~g  212 (373)
T d1miqa_         136 LVTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPV-H--DVHAG  212 (373)
T ss_dssp             EEEETTEEEEEEEEEEEECGGGTTHHHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCT-T--CTTEE
T ss_pred             EEEEcCcceEeeEEEEEeccccCccccccccccccccccccccCCCccceehhhhhhhccccceEEEEecc-C--CCCCc
Confidence            9999999999999988776442 345567889999999998888888999999999999999999999998 3  34679


Q ss_pred             eEEecCCCCCcccccccceeEecCCc-cc------cCC-------CccccchhhhhhhHHHHHHHhcc
Q psy3214         171 EVPIPSAHDPKELESRIENKYQLPEY-DH------VGD-------GCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       171 ~l~f~GGiD~~~~~G~l~~~~~~~~~-~~------~~~-------~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      +++| ||+|++++.|+++|++..... |.      ...       ...++++++...+...++++.+.
T Consensus       213 ~l~~-Gg~d~~~~~g~~~~~pv~~~~~w~i~l~~~~~~~~~~~~~~iiDTGTs~~~lP~~~~~~l~~~  279 (373)
T d1miqa_         213 YLTI-GGIEEKFYEGNITYEKLNHDLYWQIDLDVHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFAN  279 (373)
T ss_dssp             EEEE-SSCCGGGEEEEEEEEEBSSSSSSEEEEEEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHH
T ss_pred             eeec-cCCCchhccceeeEEeccccceEEEEEEEEECcEecCCcceEeccCCceeccCHHHHHHHHHH
Confidence            9999 999999999999997543322 11      111       13446788888888888877765

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

Probab=99.94  E-value=1.1e-26  Score=215.54  Aligned_cols=199  Identities=27%  Similarity=0.496  Sum_probs=164.0

Q ss_pred             CceeEeccCCccceecccccCcCCCCCCCcEEEcc-c----cccceeeeecccCccCCCcEEEEEeCCce-EEEEEeEEE
Q psy3214          19 DYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-V----FIGKFYTVFDMDNNQKNGTQFAIRYGSGA-VSGYLSQDT   92 (336)
Q Consensus        19 ~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c----~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs-~~G~~~~D~   92 (336)
                      .|.+++.+|+|+|..    .+.+||||+++||++. |    +.++.|+|++|+||+..++.+.+.|++|+ ++|.+++|+
T Consensus        16 ~Y~~~i~iGtP~Q~~----~v~vDTGS~~~Wv~~~~C~~c~~~~~~y~~~~SsT~~~~~~~~~~~y~~g~~~~G~~~~D~   91 (325)
T d2apra_          16 EYYGQVTIGTPGKKF----NLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADGRTWSISYGDGSSASGILAKDN   91 (325)
T ss_dssp             EEEEEEEETTTTEEE----EEEEETTCCCCEEEBTTCSSCCTTSCCBCGGGCTTCEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             EEEEEEEEeCCCEEE----EEEEECCCCcEEEeCCCCCccccCCCccCcccCCceeECCeEEEEEeCCCCeEEEEEEeee
Confidence            599999999998863    6889999999999974 3    35678999999999999999999999996 999999999


Q ss_pred             EEECCeEEeceEEEEEEeeCCcccccccccccccCccccccc-CCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCce
Q psy3214          93 LRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAV-DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGE  171 (336)
Q Consensus        93 v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~-~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G~  171 (336)
                      +++++.+++++.|+++..... .....+++||+|||++..+. ....+++.+|++|++|++++||+||.+ . .....|.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~GilGlg~~~~~~~~~~~~~~~~l~~~g~i~~~~fs~~l~~-~-~~~~~g~  168 (325)
T d2apra_          92 VNLGGLLIKGQTIELAKREAA-SFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGK-A-KNGGGGE  168 (325)
T ss_dssp             EEETTEEEEEEEEEEEEEECH-HHHTSSCSEEEECSCGGGCSSTTCCCHHHHHHHTTSCSSSEEEEEECC-G-GGTCCEE
T ss_pred             EEeeeeeccCcceeeeeeecc-cccccccCcccccccccccccccCCcchhHHHhhccccceeEEEEecc-C-CCCCCeE
Confidence            999999999999999988753 45566789999999987764 446789999999999999999999987 3 2345799


Q ss_pred             EEecCCCCCcccccccceeEecCC--cccc-------C--------CCccccchhhhhhhHHHHHHHhccc
Q psy3214         172 VPIPSAHDPKELESRIENKYQLPE--YDHV-------G--------DGCSASYTEMQQWTNNIIEAINQGY  225 (336)
Q Consensus       172 l~f~GGiD~~~~~G~l~~~~~~~~--~~~~-------~--------~~~~~s~t~l~~w~~~i~~~i~~g~  225 (336)
                      |+| ||+|+++++|+++|.+....  ++..       .        ....++++.+.+.+..+++++.+..
T Consensus       169 l~~-Gg~d~~~~~~~~~~~~~~~~~~~~~v~l~~i~i~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~~  238 (325)
T d2apra_         169 YIF-GGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASVARAY  238 (325)
T ss_dssp             EEE-TCCCGGGBCSCCEEEECBCTTSSCEEEECEEEETTEEEECCEEEEECTTCSSEEEEHHHHHHHHHHH
T ss_pred             EEe-cCCCchhhccceeeEeecCCCceEEEEEeeEEECCEeecceeeeeccCCCccccCCHHHHHHHHHHh
Confidence            999 99999999999999754322  2210       0        0123367888888888888887753

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

Probab=99.94  E-value=8.6e-27  Score=215.48  Aligned_cols=170  Identities=29%  Similarity=0.439  Sum_probs=152.3

Q ss_pred             eCccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEE
Q psy3214          15 LTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYL   88 (336)
Q Consensus        15 i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~   88 (336)
                      ..-.+|++++.+|+|+|.+    .+.+||||+++||++.      |..++.|+|++|+||+..++.+.+.|+.|+++|.+
T Consensus         9 ~~d~~Y~~~i~iGtP~q~~----~~~~DTGS~~~Wv~~~~C~~~~~~~~~~f~p~~Sst~~~~~~~~~~~y~~g~~~G~~   84 (324)
T d1am5a_           9 EADTEYYGVISIGTPPESF----KVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETGKTVDLTYGTGGMRGIL   84 (324)
T ss_dssp             ETTTEEEEEEEETTTTEEE----EEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEEE
T ss_pred             cCCcEEEEEEEEcCCCeEE----EEEEECCCcceEEecCCCCccccCCCCCCCcccCCceeECCcceEEEecCCceEEEE
Confidence            3445899999999999864    6788999999999974      23667899999999999999999999999999999


Q ss_pred             eEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCC
Q psy3214          89 SQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLA  168 (336)
Q Consensus        89 ~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~  168 (336)
                      +.|.+++++.+++++.|+++....+..+.....+||+|||++..+.....+++++|.++++|++++||+||++ +  ...
T Consensus        85 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~gLg~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~l~~-~--~~~  161 (324)
T d1am5a_          85 GQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSG-G--GAN  161 (324)
T ss_dssp             EEEEEESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEECCS-T--TCS
T ss_pred             EEeecccCcccceeEEEEEeeeeccceeecccccccccccCcccccCCCCcHHHHHHhccCcccceEEEEecC-C--CCC
Confidence            9999999999999999999999887667777889999999998877778899999999999999999999988 3  346


Q ss_pred             CceEEecCCCCCcccccccceeEe
Q psy3214         169 NGEVPIPSAHDPKELESRIENKYQ  192 (336)
Q Consensus       169 ~G~l~f~GGiD~~~~~G~l~~~~~  192 (336)
                      +|.|+| ||+|++++.++++|++.
T Consensus       162 ~g~l~~-Gg~d~~~~~~~~~~~p~  184 (324)
T d1am5a_         162 GSEVML-GGVDNSHYTGSIHWIPV  184 (324)
T ss_dssp             CEEEEE-SSCCGGGBCSCCEEEEE
T ss_pred             CceEEe-eccccccccCceEEeec
Confidence            899999 99999999999999743

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.8e-26  Score=214.45  Aligned_cols=200  Identities=28%  Similarity=0.480  Sum_probs=163.4

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-c-------cccceeeeecccCccCCCcEEEEEeCCceEEEEE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-V-------FIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYL   88 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c-------~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~   88 (336)
                      -.+|++++.+|+|+|.+    .+.+||||+++||++. |       ..++.|+|++|+||+..++.+.+.|++|+++|.+
T Consensus        14 ~~~Y~~~i~iGtP~Q~~----~l~~DTGSs~~Wv~~~~C~~~~~~c~~~~~f~~~~SsT~~~~~~~~~~~Y~~gs~~G~~   89 (335)
T d1smra_          14 NSQYYGEIGIGTPPQTF----KVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDSSSYMENGDDFTIHYGSGRVKGFL   89 (335)
T ss_dssp             TTEEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTCCTTCGGGGGSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEE
T ss_pred             CCEEEEEEEECCCCeEE----EEEEECCcccEEEEcCCCCCccccccCCCcCCCccCcccccCCCcEEEEecCceEEEEE
Confidence            35799999999999864    6788999999999863 2       3567999999999999999999999999999999


Q ss_pred             eEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCC
Q psy3214          89 SQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLA  168 (336)
Q Consensus        89 ~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~  168 (336)
                      ++|+|++++.++.++.++++. .....+....++||+|||++........+++++|++|+.+++++||++|.+ +. ...
T Consensus        90 ~~D~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Gi~glg~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~-~~-~~~  166 (335)
T d1smra_          90 SQDSVTVGGITVTQTFGEVTQ-LPLIPFMLAQFDGVLGMGFPAQAVGGVTPVFDHILSQGVLKEKVFSVYYNR-GP-HLL  166 (335)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE-CCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCBSSSEEEEEECC-SS-SSC
T ss_pred             EEEEEEecccccccEEEEEEe-cccccccccccccccccccccccccCCCchHHHHHHhcCccccceeEEecc-CC-Ccc
Confidence            999999999998866555444 444566677889999999998777778889999999999999999999988 42 345


Q ss_pred             CceEEecCCCCCcccccccceeEecCCc-cc------------c--CCC---ccccchhhhhhhHHHHHHHhcc
Q psy3214         169 NGEVPIPSAHDPKELESRIENKYQLPEY-DH------------V--GDG---CSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       169 ~G~l~f~GGiD~~~~~G~l~~~~~~~~~-~~------------~--~~~---~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      .|+|+| ||+|++++.|++.|++..... +.            .  ..+   ..++++++.+.+..+++++.+.
T Consensus       167 ~g~l~~-G~~d~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~  239 (335)
T d1smra_         167 GGEVVL-GGSDPQHYQGDFHYVSLSKTDSWQITMKGVSVGSSTLLCEEGCEVVVDTGSSFISAPTSSLKLIMQA  239 (335)
T ss_dssp             CEEEEE-SSCCGGGEEEEEEEEECSBTTTTEEEEEEEEETTSCCBCTTCEEEEECTTBSSEEECHHHHHHHHHH
T ss_pred             ceeEec-cccCcccccCceeeeecccccceEEEEeEEEECCeeEeccCCceEEEeCCCCcccCCHHHHHHHHHH
Confidence            799999 999999999999987432211 10            0  011   2347788888999888888775

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.93  E-value=1.6e-26  Score=215.53  Aligned_cols=193  Identities=17%  Similarity=0.266  Sum_probs=158.2

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEccc---------------cccceeeeecccCccCCCcEEEEEeCC
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDV---------------FIGKFYTVFDMDNNQKNGTQFAIRYGS   81 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c---------------~~~~~y~~~~Sst~~~~~~~~~i~Yg~   81 (336)
                      ...|++++.+|+|+|..    .+.+||||+++||++.|               ..++.|+|++|+|++..++.+.+.||+
T Consensus        11 ~~~Y~~~i~iGtP~q~~----~~i~DTGS~~~Wv~~~~~~c~~~~~~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Y~~   86 (334)
T d1j71a_          11 GPSYAADIVVGSNQQKQ----TVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGD   86 (334)
T ss_dssp             SSSEEEEEEETTTTEEE----EEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEEEEBTT
T ss_pred             CCEEEEEEEEcCCCeEE----EEEEECCCcceEEeeCCCCccccccccCCcccccCCcCCcccCCcccCCCcCEEEEeCC
Confidence            46799999999998864    67899999999998642               245579999999999999999999998


Q ss_pred             ce-EEEEEeEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCccccccc--CCCCchHHHHHHhcccCCCeEEEE
Q psy3214          82 GA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFY  158 (336)
Q Consensus        82 Gs-~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~--~~~~~~~~~l~~q~~i~~~~Fs~~  158 (336)
                      |+ +.|.++.|++++++++++++.||++...+.       .+||+|||++..+.  ....+++.+|.+|++|++++||+|
T Consensus        87 g~~~~G~~~~D~~~~g~~~~~~~~f~~~~~~~~-------~~GilGlg~~~~~~~~~~~~~~~~~l~~q~~i~~~~fs~~  159 (334)
T d1j71a_          87 LTSSQGSFYKDTVGFGGISIKNQQFADVTTTSV-------DQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLY  159 (334)
T ss_dssp             SCEEEEEEEEEEEEETTEEEEEEEEEEEEEESS-------SSCEEECSCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEE
T ss_pred             CceEEEEEEeeEEEEeeeeccCceeeeeeeecc-------ccCccccccccccccccccchhhHHHHhccccccceEEEE
Confidence            55 999999999999999999999999987763       48999999987653  345678999999999999999999


Q ss_pred             eecCCCCCCCCceEEecCCCCCcccccccceeEecCCc-cc------cCC---------CccccchhhhhhhHHHHHHHh
Q psy3214         159 LNRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPEY-DH------VGD---------GCSASYTEMQQWTNNIIEAIN  222 (336)
Q Consensus       159 l~~~~~~~~~~G~l~f~GGiD~~~~~G~l~~~~~~~~~-~~------~~~---------~~~~s~t~l~~w~~~i~~~i~  222 (336)
                      |.+ .  ...+|.|+| ||+|+++|.|++.|++..... +.      ..+         ...++++++.+++..+++++.
T Consensus       160 l~~-~--~~~~g~l~l-Gg~d~~~~~g~~~~~~~~~~~~~~v~l~~i~v~g~~~~~~~~aiiDSGt~~~~lp~~~~~~l~  235 (334)
T d1j71a_         160 LNS-E--DASTGKIIF-GGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNADVVLDSGTTITYFSQSTADKFA  235 (334)
T ss_dssp             CCC-T--TCSEEEEEE-TEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEEEEEEEEECTTCSSEEECHHHHHHHH
T ss_pred             ecc-C--CCCCceEEe-cccChhhcccceeEeeeccccceEEeeceEEECCEEecccccccccCCCcceeccHHHHHHHH
Confidence            988 3  346799999 999999999999997543322 21      111         123467888888888888877


Q ss_pred             cc
Q psy3214         223 QG  224 (336)
Q Consensus       223 ~g  224 (336)
                      +.
T Consensus       236 ~~  237 (334)
T d1j71a_         236 RI  237 (334)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

Probab=99.93  E-value=2e-25  Score=209.30  Aligned_cols=203  Identities=20%  Similarity=0.281  Sum_probs=163.5

Q ss_pred             eeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-------ccccceeeeecccCccCCCcEEEEEeCCceEE
Q psy3214          13 FTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVS   85 (336)
Q Consensus        13 ~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~   85 (336)
                      ++..-.+|.+++.+|+|+|.+    .+.+||||+++||++.       |..++.|+|++|+||+..++.+.+.|++|++.
T Consensus         9 ~~~~~~~Y~~~i~iGtP~Q~~----~~ivDTGSs~~wv~~~~C~~~~~c~~~~~f~~~~SsT~~~~~~~~~~~y~~g~~~   84 (357)
T d1mppa_           9 YDFDLEEYAIPVSIGTPGQDF----YLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTGGAN   84 (357)
T ss_dssp             EETTTTEEEEEEEETTTTEEE----EEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSSCEEE
T ss_pred             ecCCCCEEEEEEEEcCCCeEE----EEEEeCCCcceEEccCCCCCCccccCCCCCCCccCCccccCCcceEEecCCCcEE
Confidence            445667899999999999864    6789999999999874       34667899999999999999999999999999


Q ss_pred             EEEeEEEEEECCeEEeceEEEEEEeeCCccc-----ccccccccccCccccccc------CCCCchHHHHHHhcccCCCe
Q psy3214          86 GYLSQDTLRIGDLTIKNQVFGEAIKEPGFTF-----VAAKFDGILGMGYDNIAV------DGVEPPFYNIIQQKLLEKNV  154 (336)
Q Consensus        86 G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~-----~~~~~dGIlGLg~~~~s~------~~~~~~~~~l~~q~~i~~~~  154 (336)
                      |.++.|++++++++++++.|++++...+...     .....+||+|||++..+.      ....+++.+|++|++|++++
T Consensus        85 G~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~  164 (357)
T d1mppa_          85 GIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPV  164 (357)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSE
T ss_pred             EEEEeeecccccceECcEEEEEEEeecccceecccccccccccccccccCCccccccccCCCCCCHHHHHHhccccccce
Confidence            9999999999999999999999988764322     234568999999976542      34578999999999999999


Q ss_pred             EEEEeecCCCCCCCCceEEecCCCCCcccccccceeEecCCc-----c------ccCC------------Cccccchhhh
Q psy3214         155 FGFYLNRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPEY-----D------HVGD------------GCSASYTEMQ  211 (336)
Q Consensus       155 Fs~~l~~~~~~~~~~G~l~f~GGiD~~~~~G~l~~~~~~~~~-----~------~~~~------------~~~~s~t~l~  211 (336)
                      ||+||++ +   ...|.|+| ||+|+++++|++.|++.....     +      ...+            ...++++++.
T Consensus       165 fs~~l~~-~---~~~G~l~~-Gg~d~~~~~~~~~~~pi~~~~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~ilDSGts~~  239 (357)
T d1mppa_         165 FSVYMNT-N---DGGGQVVF-GGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFTIDTGTNFF  239 (357)
T ss_dssp             EEEECCC-S---SSEEEEEE-SSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCSE
T ss_pred             EEEEecc-C---CCCceEEC-cccChhHcCCceeEEEeccCCCCceeEEEEEeeEEECCeEeeecCCCcceEeeccCccc
Confidence            9999988 3   24799999 999999999999987533211     1      0000            1234667778


Q ss_pred             hhhHHHHHHHhcc
Q psy3214         212 QWTNNIIEAINQG  224 (336)
Q Consensus       212 ~w~~~i~~~i~~g  224 (336)
                      +.+..+++++.+.
T Consensus       240 ~lp~~~~~~i~~~  252 (357)
T d1mppa_         240 IAPSSFAEKVVKA  252 (357)
T ss_dssp             EEEHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHH
Confidence            8888788777664

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

Probab=99.92  E-value=1.3e-24  Score=202.41  Aligned_cols=193  Identities=23%  Similarity=0.368  Sum_probs=154.9

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeeeecccCccCCCcEEEEEeCCceEEEEEeEEEEEEC
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIG   96 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ig   96 (336)
                      ..+|.+++.+|+|+|..    .+.+||||+++||++.+|      +.+|+|++.++..+.+.|++|+++|.++.|+++++
T Consensus        11 ~~~Y~~~i~iGtP~Q~~----~~i~DTGSs~~wv~~~~c------~~~sst~~~~~~~~~i~Y~~gs~~G~~~~D~~~~~   80 (340)
T d1wkra_          11 LVDYVVNVGVGSPATTY----SLLVDTGSSNTWLGADKS------YVKTSTSSATSDKVSVTYGSGSFSGTEYTDTVTLG   80 (340)
T ss_dssp             SSCEEEEEEETTTTEEE----EEEEETTCCCCEECSSSC------CCCCTTCEEEEEEEEEECSSCEEEEEEEEEEEEET
T ss_pred             CeEEEEEEEEcCCCeEE----EEEEECCCcceEEcCCCC------CCCCCCcCCCCCeEEEEeCCeEEEEEEEEEEEeeC
Confidence            35699999999999864    678899999999987654      23477888889999999999999999999999999


Q ss_pred             CeEEeceEEEEEEeeCCcccccccccccccCccccccc--------CCCCchHHHHHHhcccCCCeEEEEeecCCCCCCC
Q psy3214          97 DLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAV--------DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLA  168 (336)
Q Consensus        97 ~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~--------~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~  168 (336)
                      +++++++.||++....+.    ..++||+|+|+.....        ....+++++|++|+.+.++.|++||++.+.....
T Consensus        81 ~~~~~~~~fg~~~~~~~~----~~~~gi~g~g~~~~~~~~~~~~~~~~~~~~~~~l~~q~~i~~~~fs~~l~~~~~~~~~  156 (340)
T d1wkra_          81 SLTIPKQSIGVASRDSGF----DGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESST  156 (340)
T ss_dssp             TEEEEEEEEEEEEEEESC----TTCSEEEECSCGGGGTTSEESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEE
T ss_pred             CeeeccEEEEEEEeccCc----ccccceecccccccccccccCccccCcCchhhhHHhhhccchhheeeeecccCCCCCC
Confidence            999999999999987642    4578999999876542        3456799999999999999999999883233446


Q ss_pred             CceEEecCCCCCcccccccceeEecCCc-----cc------cCC---------CccccchhhhhhhHHHHHHHhcc
Q psy3214         169 NGEVPIPSAHDPKELESRIENKYQLPEY-----DH------VGD---------GCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       169 ~G~l~f~GGiD~~~~~G~l~~~~~~~~~-----~~------~~~---------~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      +|+|+| ||+|+++|.|++.|++.....     +.      ..+         ...++++++.+++..+++.+.+.
T Consensus       157 ~g~l~~-Gg~d~~~~~g~i~~~pv~~~~~~~~y~~i~~~~~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~  231 (340)
T d1wkra_         157 NGELTF-GATDSSKYTGSITYTPITSTSPASAYWGINQSIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKYKKA  231 (340)
T ss_dssp             EEEEEE-SSCCGGGCSSCCEEEECCSSTTGGGSSEEEEEEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHHHHH
T ss_pred             CceEEc-cccChhhcccceEEEEeecCCCCcceeEEEEEEEECCceEeccCcceEEecCCccEeccHHHHHHHHHH
Confidence            799999 999999999999997543321     10      011         12346788888888888887764

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.7e-25  Score=203.72  Aligned_cols=203  Identities=26%  Similarity=0.468  Sum_probs=164.7

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEcc--------ccccceeeeecccCccCCCcEEEEEeCCceEEEE
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD--------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGY   87 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~--------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~   87 (336)
                      .-..|.+++.+|+|+|.+    .+.+||||+++||++.        |..++.|+|++|+||+..++.+.+.|++|+++|.
T Consensus        13 ~d~~Y~~~i~iGtP~Q~~----~~~~DTGS~~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~~~~~~g~~~G~   88 (337)
T d1hrna_          13 MDTQYYGEIGIGTPPQTF----KVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGF   88 (337)
T ss_dssp             TTTEEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTSCTTSHHHHSSCCBCGGGCSSCEEEEEEEEEEETTEEEEEE
T ss_pred             CCcEEEEEEEEeCCCEEE----EEEEECCCcceEEEcCCCCCcccccccCCCCChhhCCceEECCccEEEEecCcEEEEE
Confidence            345699999999999864    7889999999999874        2346789999999999999999999999999999


Q ss_pred             EeEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecC-CCCC
Q psy3214          88 LSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRY-NTEK  166 (336)
Q Consensus        88 ~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~-~~~~  166 (336)
                      ++.|++.+++.+++++.++++.... ..+.....+||+|||++........+++++|++|+.|+++.|+++|.+. ....
T Consensus        89 ~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~GilGl~~~~~~~~~~~~~~~~l~~~~~i~~~~f~~~l~~~~~~~~  167 (337)
T d1hrna_          89 LSQDIITVGGITVTQMFGEVTEMPA-LPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQ  167 (337)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCH-HHHTTCSSCEEEECSCGGGCGGGCCCHHHHHHTTTCBSSSEEEEEECCCCC---
T ss_pred             EEEeeeeecCceeeeEEEEEEeccc-cccccccccccccccccccccCCCCcchhhHhhcCCCccceeeEEeccccCCCc
Confidence            9999999999999987777665444 4566778899999999887767778999999999999999999999983 1123


Q ss_pred             CCCceEEecCCCCCcccccccceeEecCCc-c------c-cC-------C---CccccchhhhhhhHHHHHHHhcc
Q psy3214         167 LANGEVPIPSAHDPKELESRIENKYQLPEY-D------H-VG-------D---GCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       167 ~~~G~l~f~GGiD~~~~~G~l~~~~~~~~~-~------~-~~-------~---~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      ..+|.|+| |++|++++.|++.|++..... +      . ..       .   ...++++.+.+++..+++++.+.
T Consensus       168 ~~~g~l~~-G~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~  242 (337)
T d1hrna_         168 SLGGQIVL-GGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEA  242 (337)
T ss_dssp             CCCEEEEE-TSCCGGGEEEEEEEEEBSSTTSCEEEECEEEETTEEEESTTCEEEEECTTCSSEEECHHHHHHHHHH
T ss_pred             ccCceEEc-cccChhhcCCceeeeeeeccceeEEeecceeccccccccccCcceEEeCCCcceeccHHHHHHHHHH
Confidence            46799999 999999999999997533221 1      0 00       0   12347788888888888888776

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9e-25  Score=207.21  Aligned_cols=204  Identities=17%  Similarity=0.225  Sum_probs=155.8

Q ss_pred             eCccCceeEeccCCccceecccccCcCCCCCCCcEEEcc-c-cccceeeeecccCccCCCcEEEEEeCCceEEEEEeEEE
Q psy3214          15 LTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-V-FIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDT   92 (336)
Q Consensus        15 i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c-~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~D~   92 (336)
                      .++..|++++.+|+|+|.+    .+.+||||+++||++. | ..++.|+|++|+||+..++.+.+.|++|+++|.+++|+
T Consensus        11 ~~~~~Y~~~i~IGtP~Q~~----~li~DTGSs~lWv~~~~c~~~~~~f~~~~SsT~~~~~~~~~i~Y~~g~~~G~~~~D~   86 (387)
T d2qp8a1          11 KSGQGYYVEMTVGSPPQTL----NILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDL   86 (387)
T ss_dssp             ETTTEEEEEEEETTTTEEE----EEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCCCEEEEEEEECCCCEEE----EEEEECCccceEEccCCCCcCCCccCcccCCCcEeCCCcEEEEeCCccEEEEEEEEE
Confidence            4567799999999999864    6788999999999975 3 36778999999999999999999999999999999999


Q ss_pred             EEECC--eEEeceEEEEEEeeCCcccccccccccccCccccccc--CCCCchHHHHHHhcccCCCeEEEEeecCC-----
Q psy3214          93 LRIGD--LTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNRYN-----  163 (336)
Q Consensus        93 v~ig~--~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~--~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~-----  163 (336)
                      |+|++  ....++.|+.+.......+....++||||||++..+.  ....++++.|.+++.+ +++||+++.+..     
T Consensus        87 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~~~~~-~~~fs~~l~~~~~~~~~  165 (387)
T d2qp8a1          87 VSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHV-PNLFSLQLCGAGFPLNQ  165 (387)
T ss_dssp             EECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCC-CSCEEEEECCCSSCCCH
T ss_pred             EEEcCCCceeEeEEEEEEEecCCcccccccccccccccccccccCCCCCCchHHHHhhccCc-ceeEeEeeccccccccc
Confidence            99985  2233355655555444455667889999999987664  3456788888888876 589999998720     


Q ss_pred             --CCCCCCceEEecCCCCCcccccccceeEecCCc-cc------cCC---------------CccccchhhhhhhHHHHH
Q psy3214         164 --TEKLANGEVPIPSAHDPKELESRIENKYQLPEY-DH------VGD---------------GCSASYTEMQQWTNNIIE  219 (336)
Q Consensus       164 --~~~~~~G~l~f~GGiD~~~~~G~l~~~~~~~~~-~~------~~~---------------~~~~s~t~l~~w~~~i~~  219 (336)
                        .....+|+|+| ||+|+++|+|+++|.+..... +.      ..+               ...++++++.+.+..+++
T Consensus       166 ~~~~~~~~G~l~~-Gg~d~~~~~g~~~~~~~~~~~~~~v~~~~i~v~g~~~~~~~~~~~~~~aiiDSGts~i~lp~~~~~  244 (387)
T d2qp8a1         166 SEVLASVGGSMII-GGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFE  244 (387)
T ss_dssp             HHHHHSCCEEEEE-TSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHH
T ss_pred             cccccCCCceeEe-cccccccccCceEeecccccceeEEEEEEEEECCEecccccccCCccceEEecCCCeEeCCHHHHH
Confidence              01246799999 999999999999987433211 11      000               123367778888888887


Q ss_pred             HHhcc
Q psy3214         220 AINQG  224 (336)
Q Consensus       220 ~i~~g  224 (336)
                      ++...
T Consensus       245 ~l~~~  249 (387)
T d2qp8a1         245 AAVKS  249 (387)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=99.91  E-value=2.2e-24  Score=200.93  Aligned_cols=194  Identities=21%  Similarity=0.304  Sum_probs=158.4

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEccc---------------cccceeeeecccCccCCCcEEEEEeCC
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDV---------------FIGKFYTVFDMDNNQKNGTQFAIRYGS   81 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c---------------~~~~~y~~~~Sst~~~~~~~~~i~Yg~   81 (336)
                      ...|.+++.+|+|+|-.    .+.+||||+++||++.+               ..+..|+|++|+||+..++.+++.|++
T Consensus        11 ~~~Y~~~i~iGtP~Q~~----~~i~DTGS~~~Wv~~~~~~c~~~~~~~~~~~~~~~~~y~~~~Sst~~~~~~~~~~~Y~~   86 (342)
T d1eaga_          11 QVTYAADITVGSNNQKL----NVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGD   86 (342)
T ss_dssp             SSSEEEEEEETTTTEEE----EEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECTT
T ss_pred             CcEEEEEEEECCCCeEE----EEEEECCCcceEEeecCCCccccccccCccccccCCcCCCccCcceeECCeeEEEEeCC
Confidence            45799999999998853    67889999999998642               245579999999999999999999999


Q ss_pred             ce-EEEEEeEEEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccC-CCCchHHHHHHhcccCCCeEEEEe
Q psy3214          82 GA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVD-GVEPPFYNIIQQKLLEKNVFGFYL  159 (336)
Q Consensus        82 Gs-~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~-~~~~~~~~l~~q~~i~~~~Fs~~l  159 (336)
                      |+ +.|.++.|++++++.++++|.|+++....       ..+|++|||++..+.. ...+++.+|.+|+.|++++||+||
T Consensus        87 g~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~g~~Glg~~~~~~~~~~~~~~~~L~~q~~i~~~~fs~~l  159 (342)
T d1eaga_          87 GSSSQGTLYKDTVGFGGVSIKNQVLADVDSTS-------IDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYL  159 (342)
T ss_dssp             SCEEEEEEEEEEEEETTEEEEEEEEEEEEEES-------SSSCEEECSCGGGCSSCSCCCHHHHHHHTTSSSSSEEEEEC
T ss_pred             CceEEEEEEeeEEEeceEeeeeeEEEeeceee-------cccccccccccccccCCccCccceehhhcCCccceEEEEEc
Confidence            98 78999999999999999999999998664       2479999999876543 356899999999999999999999


Q ss_pred             ecCCCCCCCCceEEecCCCCCcccccccceeEecCCc-c------ccCC----------CccccchhhhhhhHHHHHHHh
Q psy3214         160 NRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPEY-D------HVGD----------GCSASYTEMQQWTNNIIEAIN  222 (336)
Q Consensus       160 ~~~~~~~~~~G~l~f~GGiD~~~~~G~l~~~~~~~~~-~------~~~~----------~~~~s~t~l~~w~~~i~~~i~  222 (336)
                      .+ .  ....|.|+| ||+|++++.|++.|++..... |      ...+          ...++++++.+.+..+++++.
T Consensus       160 ~~-~--~~~~G~l~~-Gg~d~~~~~g~~~~~p~~~~~~w~v~l~~i~vgg~~~~~~~~~~iiDSGts~~~lp~~~~~~l~  235 (342)
T d1eaga_         160 NS-P--DAATGQIIF-GGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQII  235 (342)
T ss_dssp             CC-T--TCSEEEEEE-TEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEEEEEEEEEECTTCSSEEECHHHHHHHH
T ss_pred             CC-C--CCCCceEEE-cccCchhccceEEEEecccccceEEEEeeEEECCEEecccccccccccCCccccCCHHHHHHHH
Confidence            88 2  345799999 999999999999987543322 1      1111          123367788888888888887


Q ss_pred             ccc
Q psy3214         223 QGY  225 (336)
Q Consensus       223 ~g~  225 (336)
                      +..
T Consensus       236 ~~l  238 (342)
T d1eaga_         236 KAF  238 (342)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            763

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

Probab=99.91  E-value=1.8e-24  Score=199.71  Aligned_cols=192  Identities=20%  Similarity=0.368  Sum_probs=152.0

Q ss_pred             cCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCce-EEEEEeE
Q psy3214          18 TDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGA-VSGYLSQ   90 (336)
Q Consensus        18 ~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs-~~G~~~~   90 (336)
                      .+|.+++.+|+++      +.+.+||||+++||++.      |..++.|++ +|||+...++++.+.|++|+ +.|.++.
T Consensus        15 ~~Y~~~i~iG~q~------~~l~~DTGSs~~Wv~~~~C~~~~~~~~~~~~~-~sSt~~~~~~~~~i~Y~~G~~~~G~~~~   87 (323)
T d1izea_          15 EEYITQVTVGDDT------LGLDFDTGSADLWVFSSQTPSSERSGHDYYTP-GSSAQKIDGATWSISYGDGSSASGDVYK   87 (323)
T ss_dssp             CCEEEEEEETTEE------EEEEEETTCCCCEECBTTSCHHHHTTSCCBCC-CTTCEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             cEEEEEEEECCee------EEEEEECCCcceEEEcCCCCChhhcCCCccCc-cccccccCCCEEEEEcCCcceeeeEEEe
Confidence            5799999999754      26789999999999975      345566765 46778888999999999997 8999999


Q ss_pred             EEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCC---CCchHHHHHHhcccCCCeEEEEeecCCCCCC
Q psy3214          91 DTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDG---VEPPFYNIIQQKLLEKNVFGFYLNRYNTEKL  167 (336)
Q Consensus        91 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~---~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~  167 (336)
                      |++++++.+++++.|+++.......+.....+||||||++..+...   ...+++++  ++.+++++|+++|.+ +    
T Consensus        88 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~~--~~~~~~~~fs~~l~~-~----  160 (323)
T d1izea_          88 DKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNV--KSSLSEPIFAVALKH-N----  160 (323)
T ss_dssp             EEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHH--GGGSSSSEEEEECCT-T----
T ss_pred             eeeeccCccccceEEEEEEeccCccccccccccccccccccccccCcccchHHHHhh--hhhcCcceEEEEccC-C----
Confidence            9999999999999999999887666667788999999998776433   23344555  345899999999998 3    


Q ss_pred             CCceEEecCCCCCcccccccceeEecCC--ccc-c-----------CC---CccccchhhhhhhHHHHHHHhcc
Q psy3214         168 ANGEVPIPSAHDPKELESRIENKYQLPE--YDH-V-----------GD---GCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       168 ~~G~l~f~GGiD~~~~~G~l~~~~~~~~--~~~-~-----------~~---~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      ..|+|+| ||+|+++|+|++.|.+....  ++. .           ..   ...++++++.+++..+++++.+.
T Consensus       161 ~~g~l~~-Gg~d~~~~~g~~~~~~~~~~~~~~~v~~~~i~v~~~~~~~~~~~ivDSGts~~~lp~~~~~~~~~~  233 (323)
T d1izea_         161 APGVYDF-GYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGSDSSSDSITGIADTGTTLLLLDDSIVDAYYEQ  233 (323)
T ss_dssp             SCEEEEE-SSCCTTSEEEEEEEEECBCTTSSCEEEESEEEETTEEECCCEEEEECTTCCSEEECHHHHHHHHTT
T ss_pred             CCeeEEc-cccCcccccCcceeeeecCCCceEEEEeceEEECCCccccCceEEeccCCccccCCHHHHHHHHHH
Confidence            3699999 99999999999999754322  121 0           00   13447788999999999888875

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

Probab=99.90  E-value=6.1e-24  Score=196.02  Aligned_cols=202  Identities=20%  Similarity=0.348  Sum_probs=166.4

Q ss_pred             CccCceeEeccCCccceecccccCcCCCCCCCcEEEccc------cccceeeeecccCccCCCcEEEEEeCCceEEEEEe
Q psy3214          16 TPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDV------FIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLS   89 (336)
Q Consensus        16 ~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c------~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~   89 (336)
                      .-..|.+++.+|+|.|.+    .+.+||||+++||.+.+      ..++.|+|++|+||+..++.+.+.|++|+++|.++
T Consensus        12 ~~~~Y~~~v~iGtP~q~~----~~~~DTGS~~~Wv~~~~C~~~~~~~~~~y~~~~SsT~~~~~~~~~~~Y~~g~~~G~~~   87 (329)
T d2bjua1          12 QNIMFYGDAEVGDNQQPF----TFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFS   87 (329)
T ss_dssp             TTTEEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSEEEEEEE
T ss_pred             cCCEEEEEEEECCCCEEE----EEEEECCCcceEEECCCCCCccccCCCCCCcccCCCccCCCccEEEEcCCCcEEEEEE
Confidence            345799999999998864    67889999999999753      35678999999999999999999999999999999


Q ss_pred             EEEEEECCeEEeceEEEEEEeeCC-cccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCC
Q psy3214          90 QDTLRIGDLTIKNQVFGEAIKEPG-FTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLA  168 (336)
Q Consensus        90 ~D~v~ig~~~v~~~~fg~~~~~~~-~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~  168 (336)
                      .|++.+++.++.++.++.+..... ..+.....+|++|+++..........++..+..++.+.++.|+++|.+ +  ...
T Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~fs~~l~~-~--~~~  164 (329)
T d2bjua1          88 KDLVTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPV-H--DKH  164 (329)
T ss_dssp             EEEEEETTEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCCCHHHHHHHTTSSSSCEEEEECCB-T--TTB
T ss_pred             EeeeeeeeeeeccceEEEEEeeccCccccccccCccccccccccccCCccccchhhhhhhccccceeeEEecC-C--cCC
Confidence            999999999999999988876542 234456789999999988777788889999999999999999999998 3  346


Q ss_pred             CceEEecCCCCCcccccccceeEecCCc-c------cc-------CCCccccchhhhhhhHHHHHHHhccc
Q psy3214         169 NGEVPIPSAHDPKELESRIENKYQLPEY-D------HV-------GDGCSASYTEMQQWTNNIIEAINQGY  225 (336)
Q Consensus       169 ~G~l~f~GGiD~~~~~G~l~~~~~~~~~-~------~~-------~~~~~~s~t~l~~w~~~i~~~i~~g~  225 (336)
                      .|.++| ||+|++++.|++.|.+..... +      ..       .....++++.+...+..+++++.+..
T Consensus       165 ~g~l~~-gg~d~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~iDSGt~~~~lp~~~~~~l~~~~  234 (329)
T d2bjua1         165 TGFLTI-GGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNL  234 (329)
T ss_dssp             CEEEEE-SSCCGGGEEEEEEEEEEEEETTEEEEEEEEETTEEEEEEEEEECTTCCSEEECHHHHHHHTTTS
T ss_pred             cceeee-cCCCcccccCceEEEeeeeeeeEEEEEeeeEeeeEccCCcccccccccceeCCHHHHHHHHHHh
Confidence            799999 999999999999986332211 1      11       11134477888899999998888763

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.89  E-value=8.6e-23  Score=188.29  Aligned_cols=167  Identities=34%  Similarity=0.653  Sum_probs=145.7

Q ss_pred             cCceeEeccCCccceecccccCcCCCCCCCcEEEcc-c------cccceeeeecccCccCCCcEEEEEeCCceEEEEEeE
Q psy3214          18 TDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD-V------FIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQ   90 (336)
Q Consensus        18 ~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~-c------~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~   90 (336)
                      ..|.+++.+|+|+|.+    .+.+||||+.+||++. |      ..++.|+|++|+|++..++.+.+.|++|+++|.++.
T Consensus        15 ~~Y~~~v~iGtP~q~~----~l~~DTGS~~~Wv~~~~C~~~~~~~~~~~y~p~~SsT~~~~~~~~~~~y~~gs~~G~~~~   90 (337)
T d1qdma2          15 AQYFGEIGVGTPPQKF----TVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGSIAGYFSE   90 (337)
T ss_dssp             CCEEEEEEETTTTEEE----EEEEETTCCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEEEEEEEEE
T ss_pred             CEEEEEEEEcCCCEEE----EEEEECCCcceEEecCCCCCCccccCCCCCCcccCCccccCCceEEEecCCceEEEEEEe
Confidence            4699999999999864    6788999999999974 2      356789999999999999999999999999999999


Q ss_pred             EEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCc
Q psy3214          91 DTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG  170 (336)
Q Consensus        91 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G  170 (336)
                      |++++++.++.++.|+.+....+........+|++||+++.....+...++..+..|+.+.+++|++++.. +......|
T Consensus        91 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~g  169 (337)
T d1qdma2          91 DSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNR-HVDEGEGG  169 (337)
T ss_dssp             EEEEETTEEEEEEEEEEEEECCBSHHHHCSSSEEEECSCGGGCGGGCCCHHHHHTTTTCCSSSEEEEECCC-C-----CE
T ss_pred             eeEEEEeeccccceeeeeccccceeecccccccccccccCccccCCCccchhhhhhhhccCCCeEEEEeec-CCCcccCc
Confidence            99999999999999999988776666667789999999988777777788999999999999999999998 65566789


Q ss_pred             eEEecCCCCCccccccccee
Q psy3214         171 EVPIPSAHDPKELESRIENK  190 (336)
Q Consensus       171 ~l~f~GGiD~~~~~G~l~~~  190 (336)
                      .++| ||+|+++|.|++.+.
T Consensus       170 ~l~~-g~~d~~~~~~~~~~~  188 (337)
T d1qdma2         170 EIIF-GGMDPKHYVGEHTYV  188 (337)
T ss_dssp             EEEE-TCCCTTSEEEEEEEE
T ss_pred             ceec-CCcCccccccceeee
Confidence            9999 999999999998875

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

Probab=99.88  E-value=5.5e-23  Score=189.51  Aligned_cols=193  Identities=16%  Similarity=0.322  Sum_probs=151.0

Q ss_pred             cCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCce-EEEEEeE
Q psy3214          18 TDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGA-VSGYLSQ   90 (336)
Q Consensus        18 ~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs-~~G~~~~   90 (336)
                      .+|++++.+|+|++      .|.+||||+++||++.      |..++.|+|++|+|+++ ++.+.+.|++|+ +.|.++.
T Consensus        15 ~~Y~~~i~vG~~~~------~v~~DTGSs~~Wv~~~~C~~c~~~~~~~y~~s~Sst~~~-~~~~~~~Y~~G~~~~G~~~~   87 (323)
T d1bxoa_          15 EEYITPVTIGGTTL------NLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELS-GYTWSISYGDGSSASGNVFT   87 (323)
T ss_dssp             SCEEEEEEETTEEE------EEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHCEEEE-EEEEEEECTTSCEEEEEEEE
T ss_pred             cEEEEEEEECCccE------EEEEECCCcceEEECCCCCchhhcCCCCCCCcccccccC-CCEEEEEeCCCCcEEEEEEE
Confidence            57999999998754      5789999999999985      34567899999998765 678999999997 8999999


Q ss_pred             EEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccC--CCCchHHHHHHhcccCCCeEEEEeecCCCCCCC
Q psy3214          91 DTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVD--GVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLA  168 (336)
Q Consensus        91 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~--~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~  168 (336)
                      |++.+++.+++++.|+++.......+.....+||||||++..+..  ...+.+..+.+ +.+..++|++++.+ .    .
T Consensus        88 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GilGlg~~~~s~~~~~~~~~~~~~~~-~~~~~~~fs~~~~~-~----~  161 (323)
T d1bxoa_          88 DSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVK-SSLAQPLFAVALKH-Q----Q  161 (323)
T ss_dssp             EEEEETTEEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHHHHG-GGBSSSEEEEECCS-S----S
T ss_pred             EeeeccCcccccceeeeeeeeecccccccccccccccccCcccccCCCcCchHHHHHh-hhcccceeeecccc-C----C
Confidence            999999999999999999887754455668899999999776532  23444444443 34788999999887 3    4


Q ss_pred             CceEEecCCCCCcccccccceeEecCC--ccc-c------CC-------CccccchhhhhhhHHHHHHHhcc
Q psy3214         169 NGEVPIPSAHDPKELESRIENKYQLPE--YDH-V------GD-------GCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       169 ~G~l~f~GGiD~~~~~G~l~~~~~~~~--~~~-~------~~-------~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      .|.|+| ||+|++++.|+++|.+....  ++. .      ..       ...++++.+.+.+..+++++.+.
T Consensus       162 ~g~l~~-Gg~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aiiDSGTs~~~lp~~~~~~l~~~  232 (323)
T d1bxoa_         162 PGVYDF-GFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQ  232 (323)
T ss_dssp             CEEEEE-SSCCGGGBSSCCEEEECBCTTSSCEEEEEEEEETTEEEEEEEEEECTTCSSEEECHHHHHHHHTT
T ss_pred             Cceeee-eccccccccCceeeeeccCcccceeEeeeeEEECCEecCCcceEEecccccccCCHHHHHHHHHH
Confidence            699999 99999999999999754332  121 0      00       12346788888888888888765

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=8e-22  Score=181.01  Aligned_cols=199  Identities=22%  Similarity=0.334  Sum_probs=165.7

Q ss_pred             ccCceeEeccCCccceecccccCcCCCCCCCcEEEcc------ccccceeeeecccCccCCCcEEEEEeCCceEEEEEeE
Q psy3214          17 PTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGD------VFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQ   90 (336)
Q Consensus        17 ~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~------c~~~~~y~~~~Sst~~~~~~~~~i~Yg~Gs~~G~~~~   90 (336)
                      -..|.+++.+|+|+|.+    .+.+||||+++||++.      |..++.|+|++|+|++..++.+.+.|++|+++|.++.
T Consensus        13 d~~Y~~~i~vGtP~q~~----~~~~DTGSs~~Wv~~~~C~~~~~~~~~~y~~~~Sst~~~~~~~~~~~y~~gs~~G~~~~   88 (323)
T d3cmsa_          13 DSQYFGKIYLGTPPQEF----TVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILGY   88 (323)
T ss_dssp             TTEEEEEEEETTTTEEE----EEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCEEEEEEEECCCCEEE----EEEEECCCCceEEecCCCCCcccCCCCCCCccccCccccCCCcEEEEcCCceEEEEEEE
Confidence            45699999999998864    6789999999999975      2357799999999999999999999999999999999


Q ss_pred             EEEEECCeEEeceEEEEEEeeCCcccccccccccccCcccccccCCCCchHHHHHHhcccCCCeEEEEeecCCCCCCCCc
Q psy3214          91 DTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG  170 (336)
Q Consensus        91 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~~i~~~~Fs~~l~~~~~~~~~~G  170 (336)
                      |++++++.++..+.|+.+.......+......+++|+++...+.....+++.+|+++++|+++.||++|.+ +   ...|
T Consensus        89 d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~-~---~~~~  164 (323)
T d3cmsa_          89 DTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDR-N---GQES  164 (323)
T ss_dssp             EEEEETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCT-T---SSCE
T ss_pred             EEEEEeccccccceEEEEEeecccccccccccccccccccccccCCCcchhhhHhhcCCCcccceeEEecc-C---CCCC
Confidence            99999999999999999988887666666678889999888887788899999999999999999999998 3   3579


Q ss_pred             eEEecCCCCCcccccccceeEecCCcc-c--------------cCC---CccccchhhhhhhHHHHHHHhcc
Q psy3214         171 EVPIPSAHDPKELESRIENKYQLPEYD-H--------------VGD---GCSASYTEMQQWTNNIIEAINQG  224 (336)
Q Consensus       171 ~l~f~GGiD~~~~~G~l~~~~~~~~~~-~--------------~~~---~~~~s~t~l~~w~~~i~~~i~~g  224 (336)
                      .+.+ ||+|++++.+++.|++...... .              ...   ...++++.+.+.+..+++++.+.
T Consensus       165 ~~~~-g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~  235 (323)
T d3cmsa_         165 MLTL-GAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQA  235 (323)
T ss_dssp             EEEE-SCCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHH
T ss_pred             ceec-cccCcccccCceEEeeccccceeEEEEeeEeeCCeeeecCCCeeEEEecCcceEEecHHHHHHHHHH
Confidence            9999 9999999999999864332221 0              011   12336777888888888777765

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.70  E-value=3.7e-18  Score=160.36  Aligned_cols=188  Identities=11%  Similarity=0.049  Sum_probs=128.0

Q ss_pred             cCceeEeccCCccceecccccCcCCCCCCCcEEEccccc--------------cce-------eeeecccCccCCCcEEE
Q psy3214          18 TDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFI--------------GKF-------YTVFDMDNNQKNGTQFA   76 (336)
Q Consensus        18 ~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~--------------~~~-------y~~~~Sst~~~~~~~~~   76 (336)
                      ..|++++.+|+|         |.+||||+++||++++|.              .+.       +...+|++++.....+.
T Consensus        14 ~~Y~~~i~iGtp---------liiDTGSs~~Wvpc~~c~~~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~   84 (381)
T d1t6ex_          14 SLYTIPFHDGAS---------LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYP   84 (381)
T ss_dssp             CCEEEEEETTEE---------EEEETTCCCEEECCCTTCCCCCCBTTSHHHHHHHSSCCTTCCCCCC------CBCEECC
T ss_pred             CeEEEEEEcCCc---------eEEECCCCceeeccCCCCCCcccccCCchhhhccCcCCCCCCCccccCCCCCCCCceeE
Confidence            359999999986         568999999999865221              111       22234555666778899


Q ss_pred             EEeCCce-EEEEEeEEEEEECCeEEece----EEEEEEeeCC---cccccccccccccCcccccccCCCCchHHHHHHhc
Q psy3214          77 IRYGSGA-VSGYLSQDTLRIGDLTIKNQ----VFGEAIKEPG---FTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQK  148 (336)
Q Consensus        77 i~Yg~Gs-~~G~~~~D~v~ig~~~v~~~----~fg~~~~~~~---~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~q~  148 (336)
                      +.|++|+ ++|.+++|+|++++...+++    .++.+.....   ..+.....|||+|||+...      ++..+|.+++
T Consensus        85 ~~Y~~Gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGi~Glg~~~~------s~~~ql~~~~  158 (381)
T d1t6ex_          85 YNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGL------ALPAQVASAQ  158 (381)
T ss_dssp             BCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTSCTTEEEEEECSSSTT------SHHHHHHHHH
T ss_pred             EEeCCCCEEEEEEEEEEEEecccccccceeeEEeeeeeeccccccccccccCcceeeecCCCCc------chHHHHhhhc
Confidence            9999998 78999999999998655443    3333332221   1233456799999997643      5667777777


Q ss_pred             ccCCCeEEEEeecCCCCCCCCceEEecCCCCCcccccccceeEecCCc----cc------------c------CC---Cc
Q psy3214         149 LLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPEY----DH------------V------GD---GC  203 (336)
Q Consensus       149 ~i~~~~Fs~~l~~~~~~~~~~G~l~f~GGiD~~~~~G~l~~~~~~~~~----~~------------~------~~---~~  203 (336)
                      .++ ++|+++|.+ .  ....+.+.+ |++|..+|.|++.|++.+...    +.            .      ..   ..
T Consensus       159 ~~~-~~fsl~l~~-~--~~~~~~~~~-g~~~~~~~~g~~~~~pi~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~i  233 (381)
T d1t6ex_         159 KVA-NRFLLCLPT-G--GPGVAIFGG-GPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVM  233 (381)
T ss_dssp             TCC-SEEEEECCS-S--SCEEEEESC-CSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTTCSCTTCEE
T ss_pred             Ccc-eEEEeecCC-C--cccceEeec-ccccccccCCceEEEeeeccCCCceeEEEEEEEeeCCeeeccCcccccCcceE
Confidence            775 899999988 2  335677888 999999999999997654321    10            0      00   13


Q ss_pred             cccchhhhhhhHHHHHHHhccc
Q psy3214         204 SASYTEMQQWTNNIIEAINQGY  225 (336)
Q Consensus       204 ~~s~t~l~~w~~~i~~~i~~g~  225 (336)
                      .++++.+.+++..+++++.+..
T Consensus       234 ~DTGtt~~~lp~~~~~~i~~~~  255 (381)
T d1t6ex_         234 LSTRLPYVLLRPDVYRPLMDAF  255 (381)
T ss_dssp             ECSSCSSEEECHHHHHHHHHHH
T ss_pred             EecCCceEECCHHHHHHHHHHH
Confidence            4478888889988888887753

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

Probab=97.11  E-value=0.00011  Score=66.61  Aligned_cols=58  Identities=28%  Similarity=0.608  Sum_probs=48.9

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|+++|+.|+|++.+|+.+..-+....|+.+++.+..+   ++.||+|+.+.+++|.
T Consensus       300 ~P~itf~f~g~~~~l~p~~y~~~~~~~~~~~C~~~~~~~~~~---~~~~ILG~~fl~~~y~  357 (373)
T d1miqa_         300 MPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDID---SNTFILGDPFMRKYFT  357 (373)
T ss_dssp             CCCEEEECSSCEEEECGGGSEEESSSSSCSEEEESEEECCSS---SSEEEECHHHHHHEEE
T ss_pred             CceEEEEECCEEEEECHHHeeEEEEeCCCCEEEEEEEECCCC---CCCEEEcHHhhCcEEE
Confidence            699999999999999999999987666677899888876543   3679999999888763

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00015  Score=64.63  Aligned_cols=61  Identities=51%  Similarity=1.038  Sum_probs=53.7

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|..++|++++|+++..-++...|..++..+....++.+.||+|..+.++.|.
T Consensus       262 ~P~l~f~f~g~~~~l~p~~yl~~~~~~~~~~C~~~i~~~~~~~~~~~~~ILG~~fl~~~y~  322 (337)
T d1hrna_         262 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYT  322 (337)
T ss_dssp             CCCEEEEETTEEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEE
T ss_pred             CCceeEEECCEEEEEChHHeEEEecCCCCCEEEEEEEcCCcCCCCCCCEEECHHhhCCEEE
Confidence            5999999999999999999999877777778999998888888888999999988877663

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.02  E-value=0.00019  Score=65.31  Aligned_cols=58  Identities=45%  Similarity=1.058  Sum_probs=50.5

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceeee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTV   62 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~~   62 (336)
                      +|+|+|+++|..|+|++.+|+++.    ...|..++..+.+.+++.+.||+|+.+.++.|.-
T Consensus       299 ~P~l~f~f~g~~~~l~~~~yi~~~----~~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~v  356 (370)
T d3psga_         299 LPDIVFTIDGVQYPLSPSAYILQD----DDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTV  356 (370)
T ss_dssp             CCCEEEEETTEEEEECHHHHEEEC----SSCEEESEEEECCCTTSCCEEEECHHHHTTEEEE
T ss_pred             CceEEEEECCEEEEEChHHeEEEc----CCeEEEEEEEcccCCCCCCcEEECHHhhcCEEEE
Confidence            699999999999999999999874    3459999988888888889999999998887643

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.0003  Score=62.62  Aligned_cols=61  Identities=48%  Similarity=1.057  Sum_probs=50.2

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|.++|+.+.|++++|+++...+....|..++..+.+..++.+.||+|+.+.++.|.
T Consensus       260 ~P~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~fl~~~yv  320 (335)
T d1smra_         260 LPDISFNLGGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVWVLGATFIRKFYT  320 (335)
T ss_dssp             SCCEEEEETTEEEEECHHHHBTT----CCCEEEBSEEECCCCTTTCSCEEECHHHHTTEEE
T ss_pred             CCccEEEECCeEEEEChHHeEEEeccCCCCEEEEEEEecCcCCCCCCcEEECHHHhCcEEE
Confidence            5999999999999999999998776666778998888888777788899999998887663

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

Probab=96.32  E-value=0.0021  Score=56.67  Aligned_cols=56  Identities=45%  Similarity=0.928  Sum_probs=49.4

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      +|+|+|.++|..+.|++.+|+++.+    ..|...+..+.+..+..+.||+|+.+.++.|
T Consensus       258 ~P~i~f~f~g~~~~l~p~~y~~~~~----~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y  313 (329)
T d1dpja_         258 LPDLIFNFNGYNFTIGPYDYTLEVS----GSCISAITPMDFPEPVGPLAIVGDAFLRKYY  313 (329)
T ss_dssp             CCCEEEEETTEEEEECTTTSEEEET----TEEEECEEECCCCTTTCSEEEECHHHHTTEE
T ss_pred             cceEEEEECCEEEEECHHHeEEecC----CcEEEEEEECccCCCCCCcEEEcHHhhCcEE
Confidence            5999999999999999999998764    4599888888888888899999999888766

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=96.26  E-value=0.0014  Score=57.59  Aligned_cols=60  Identities=53%  Similarity=1.237  Sum_probs=52.0

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      .|+|+|.++|..+.|++.+|+.+..-+....|..++..+...+.+...||+|..+.++.|
T Consensus       262 ~p~itf~f~g~~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~IlG~~fl~~~y  321 (337)
T d1qdma2         262 MPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYH  321 (337)
T ss_dssp             CCCEEEEETTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEE
T ss_pred             CCceEEEECCEEEEEChHHeEEEeccCCCCEEEEEEEecCcCCCCCCcEEEhHHhhcCEE
Confidence            489999999999999999999987766667899888887777777889999999888765

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

Probab=95.26  E-value=0.0036  Score=54.85  Aligned_cols=57  Identities=26%  Similarity=0.670  Sum_probs=48.2

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      +|+++|.++|..++|++.+|+.+...++...|..++..+..   ....||+|..+.++.|
T Consensus       254 ~p~~~f~~~g~~~~i~p~~y~~~~~~~~~~~C~~~i~~~~~---~~~~~IlG~~fl~~~y  310 (329)
T d2bjua1         254 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDF---PVPTFILGDPFMRKYF  310 (329)
T ss_dssp             CCCEEEECSSCEEEECHHHHEEECTTTSTTEEEECEEECCC---SSCEEEECHHHHHHEE
T ss_pred             CCceeEEeCCEEEEECHHHhEEEeecCCCCEEEEEEEECCC---CCCCEEEchHhhCcEE
Confidence            58999999999999999999999888777889988876542   3478999999887765

>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Endothiapepsin
species: Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]

Probab=94.82  E-value=0.01  Score=52.44  Aligned_cols=57  Identities=19%  Similarity=0.290  Sum_probs=42.5

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|+++|+.+.|++..|...........|..++....    ..+.||+|+.++++.|.
T Consensus       259 ~P~i~f~f~g~~~~lp~~~~~~~~~~~~~~~C~~~i~~~~----~~~~~ILG~~flr~~y~  315 (330)
T d1oewa_         259 LPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSA----GIGINIFGDVALKAAFV  315 (330)
T ss_dssp             CCCEEEEETTEEEEECHHHHEEEESSTTCSEEEESEEEST----TTSSEEECHHHHTTEEE
T ss_pred             CCcEEEEECCEEEecCHHHeeEEEecCCCCEEEEEEECCC----CCCCEEECHHHhCCEEE
Confidence            5999999999999998766555444444567987765322    34679999999888764

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

Probab=94.61  E-value=0.011  Score=51.56  Aligned_cols=56  Identities=29%  Similarity=0.817  Sum_probs=47.3

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      .|+|+|+++|..++|++.+|+..    .+..|..++..+.+.....+.||+|..+.++.|
T Consensus       253 ~P~i~f~f~g~~~~l~~~~y~~~----~~~~c~~~i~~~~~~~~~~~~~ILG~~fl~~~y  308 (324)
T d1am5a_         253 LPDITFTINGVKQPLPPSAYIEG----DQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYY  308 (324)
T ss_dssp             SCCEEEEETTEEEEECHHHHEEE----SSSCEEECEEECCSCCSSSCEEEECHHHHHHEE
T ss_pred             CCceEEEECCEEEEECHHHhEec----CCCeEEEEEEecCcCCCCCCCEEECHHhhcCEE
Confidence            59999999999999999999864    345698888887777777889999998877765

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

Probab=94.58  E-value=0.012  Score=51.31  Aligned_cols=56  Identities=23%  Similarity=0.387  Sum_probs=44.2

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+|+|+++|+.+.|++++|+..... ....|..++..    +.+.+.||+|+.+.++.|.
T Consensus       253 ~p~itf~f~g~~~~i~~~~~~~~~~~-~~~~C~~~i~~----~~~~~~~ILG~~flr~~y~  308 (323)
T d1bxoa_         253 LPDFSVSISGYTATVPGSLINYGPSG-DGSTCLGGIQS----NSGIGFSIFGDIFLKSQYV  308 (323)
T ss_dssp             CCCEEEEETTEEEEECHHHHEEEECS-SSSCEEESEEE----CTTCSSEEECHHHHTTEEE
T ss_pred             CCcEEEEECCEEEEEChHHeEEEEcC-CCCEEEEEEEC----CCCCCcEEECHHHhCCEEE
Confidence            69999999999999999999886553 45679866643    2345679999999888764

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

Probab=94.21  E-value=0.021  Score=50.22  Aligned_cols=60  Identities=22%  Similarity=0.369  Sum_probs=43.5

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccC-----CccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIA-----SSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g-----~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      +|+|+|+++|.+++|++.+|+.+....     ....|.+....+..+++....||+|..+.++.|
T Consensus       253 ~P~i~f~f~g~~~~i~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILG~~fl~~~y  317 (340)
T d1wkra_         253 LQSLFFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFY  317 (340)
T ss_dssp             CCCEEEEETTEEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEE
T ss_pred             CCceEEEECCEEEEEChHHeEeeccCceeecCccceEEEEEecccCCCCCCCCEEechHHhCCEE
Confidence            599999999999999999999765432     122233333334556666778999998888765

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

Probab=93.36  E-value=0.032  Score=48.76  Aligned_cols=52  Identities=23%  Similarity=0.463  Sum_probs=42.3

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      +|+|+|.++|.+++|++++|+++...   ..|..++...     ..+.||+|+.+.++.|
T Consensus       257 ~p~i~f~f~g~~~~i~~~~y~~~~~~---~~C~~~i~~~-----~~~~~iLG~~flr~~y  308 (325)
T d2apra_         257 FKPLVFSINGASFQVSPDSLVFEEFQ---GQCIAGFGYG-----NWGFAIIGDTFLKNNY  308 (325)
T ss_dssp             CCCEEEEETTEEEEECGGGGEEEEET---TEEEESEEEE-----SSSSEEECHHHHTTEE
T ss_pred             CCcEEEEECCEEEEEChHHeEEecCC---CEEEEEEccC-----CCCCEEECHHHhCcEE
Confidence            58999999999999999999987643   4698776542     2367999999988876

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

Probab=92.46  E-value=0.045  Score=47.47  Aligned_cols=55  Identities=18%  Similarity=0.320  Sum_probs=41.5

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEccccccceee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYT   61 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y~   61 (336)
                      +|+++|.++|..+.|++.+|+.+..  ....|..++...    .+...||+|+.+.++.|.
T Consensus       254 ~p~i~f~f~g~~~~ip~~~~~~~~~--~~~~C~~~i~~~----~~~~~~iLG~~flr~~y~  308 (323)
T d1izea_         254 LPDFSVTIGDYTATVPGEYISFADV--GNGQTFGGIQSN----SGIGFSIFGDVFLKSQYV  308 (323)
T ss_dssp             CCCEEEEETTEEEEECHHHHEEEEC--STTEEEESEEEC----TTTSSEEECHHHHTTEEE
T ss_pred             CceEEEEECCEEEEcChHHEEEEeC--CCCEEEEEEECC----CCCCCEEECHHHhCCEEE
Confidence            5899999999999999888887543  245697666532    234679999998887763

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.43  E-value=0.033  Score=48.05  Aligned_cols=52  Identities=42%  Similarity=0.857  Sum_probs=40.7

Q ss_pred             CCcEEEEECCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      +|+|+|.++|..++|++.+|+.+-    ...|..++....    .++.||+|..+.++.|
T Consensus       256 ~p~i~f~f~g~~~~l~~~~y~~~~----~~~c~~~i~~~~----~~~~~iLG~~~l~~~y  307 (323)
T d3cmsa_         256 MPTVVFEINGKMYPLTPSAYTSQD----QGFCTSGFQSEN----HSQKWILGDVFIREYY  307 (323)
T ss_dssp             SCCEEEEETTEEEEECHHHHEEEE----TTEEEESEEEC-------CCEEECHHHHTTEE
T ss_pred             CCeEEEEECCEEEEECHHHeEEcC----CCEEEEEEEeCC----CCCCEEEcHHhhCcEE
Confidence            599999999999999999998752    356887776533    4478999999888766

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=90.64  E-value=0.059  Score=47.28  Aligned_cols=51  Identities=29%  Similarity=0.470  Sum_probs=40.0

Q ss_pred             CCcEEEEE-CCEEeeeCccCceeEeccCCccceecccccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIIL-GGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~-~~~~~~i~~~~y~~~~~~g~~~~c~~~~~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      .|+++|++ +|.+|+|++.+|+++..  .+..|..++.       +.+.||+|..+.++.|
T Consensus       257 ~p~i~f~f~~g~~~~i~~~~y~~~~~--~~~~C~~~i~-------~~~~~ILG~~fl~~~y  308 (334)
T d1j71a_         257 SGDAVFNFDQGVKITVPLSELILKDS--DSSICYFGIS-------RNDANILGDNFLRRAY  308 (334)
T ss_dssp             CSEEEEEESTTCEEEEEGGGGEEECS--SSSCEEESEE-------ECTTCEECHHHHTTEE
T ss_pred             CCCceEEeCCCEEEEEChHHeEEecC--CCCEEEEEec-------CCCCcEECHHhhCcEE
Confidence            48899999 58999999999998643  3456987664       2367999998887766

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=90.52  E-value=0.062  Score=47.71  Aligned_cols=58  Identities=28%  Similarity=0.509  Sum_probs=39.2

Q ss_pred             CCcEEEEE-CCEEeeeCccCceeEeccCCccceeccc--ccCcCCCCCCCcEEEcccccccee
Q psy3214           1 MPNVDIIL-GGKNFTLTPTDYVLKVSIASSSMCLSGF--AGMDIPPPAGPIWILGDVFIGKFY   60 (336)
Q Consensus         1 ~p~i~~~~-~~~~~~i~~~~y~~~~~~g~~~~c~~~~--~~~~~dtGS~~~Wv~~~c~~~~~y   60 (336)
                      +|+|+|++ ++..+.+++.+|++...-  ...|+...  .......+....||+|+.++++.|
T Consensus       297 ~P~i~~~f~~~~~~~i~~~~y~~~~~~--~~~Cl~i~~~~~~~~~~~~~~~~ILG~~flr~~y  357 (381)
T d1t6ex_         297 VPNVQLGLDGGSDWTMTGKNSMVDVKQ--GTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFV  357 (381)
T ss_dssp             CCCEEEEETTSCEEEECHHHHEEEEET--TEEEESEEECCCCC------CSEEECHHHHTTEE
T ss_pred             cccEEEEEcCCcEEEEChhHeEEEeCC--CcEEEEEEecccccCCCCCCCcEEECHHHhCcEE
Confidence            48999999 799999999999987653  34465321  223344556678999999888765