Psyllid ID: psy3755
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 692 | 2.2.26 [Sep-21-2011] | |||||||
| A4G647 | 710 | Polyribonucleotide nucleo | yes | N/A | 0.997 | 0.971 | 0.656 | 0.0 | |
| A6SY02 | 711 | Polyribonucleotide nucleo | yes | N/A | 0.997 | 0.970 | 0.653 | 0.0 | |
| Q2SZN9 | 713 | Polyribonucleotide nucleo | yes | N/A | 0.995 | 0.966 | 0.606 | 0.0 | |
| Q63VN7 | 713 | Polyribonucleotide nucleo | yes | N/A | 0.995 | 0.966 | 0.606 | 0.0 | |
| A3N7L3 | 713 | Polyribonucleotide nucleo | yes | N/A | 0.995 | 0.966 | 0.606 | 0.0 | |
| Q3JUB3 | 713 | Polyribonucleotide nucleo | yes | N/A | 0.995 | 0.966 | 0.606 | 0.0 | |
| A3NTA2 | 713 | Polyribonucleotide nucleo | yes | N/A | 0.995 | 0.966 | 0.606 | 0.0 | |
| A9AJP0 | 715 | Polyribonucleotide nucleo | yes | N/A | 0.995 | 0.963 | 0.604 | 0.0 | |
| A1V2L2 | 713 | Polyribonucleotide nucleo | yes | N/A | 0.995 | 0.966 | 0.606 | 0.0 | |
| Q62IN1 | 713 | Polyribonucleotide nucleo | yes | N/A | 0.995 | 0.966 | 0.606 | 0.0 |
| >sp|A4G647|PNP_HERAR Polyribonucleotide nucleotidyltransferase OS=Herminiimonas arsenicoxydans GN=pnp PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/695 (65%), Positives = 572/695 (82%), Gaps = 5/695 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF + K+F+YG + +++E GEIARQA+ +VLVSIEDTV+LATVV+ KD +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHTVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT 60
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY+EK YAAGRIPG FFKREG+PSE+ET+ SRLIDRPIRPLFPEGYLNE+QI+++V+SV
Sbjct: 61 VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSV 120
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+IDPDIA++IG S ALS+S +PF GPLG A+VGYIDG+YILNPT QLK S +DL+VA
Sbjct: 121 NPEIDPDIAAMIGASAALSVSGIPFAGPLGAARVGYIDGQYILNPTATQLKTSQMDLVVA 180
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE++QL E+++L A++FGH++MK I+AI++LV++ G+ +V W P K++
Sbjct: 181 GTEAAVLMVESEAQQLSEEVMLGAVVFGHDQMKAVIDAIHDLVRDGGKPEVQWAPPAKNE 240
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDL----TFKNISKDIYSSLIDNENLTIDINDINC 296
LI+++ + +E K+R AYQ K+KQ R F ++ ++ + D +++
Sbjct: 241 ALIARVAHFAEEKLRAAYQTKDKQARTAKLKDAFAEVNAEVAAEATSVGGAAPDTSEVGN 300
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE+KI+R QILD RID R +RPI+IRTG+LPRTHGS+LFTRG+TQALV+AT
Sbjct: 301 ILFDLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIAT 360
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT+RDEQKIDALMGE++D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIKDG K
Sbjct: 421 PAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKF 480
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+LSDILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLSDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRIHILG 540
Query: 537 KMKTEVPK-CKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGI 595
+M+ VP ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG+
Sbjct: 541 EMEKAVPSGTTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV 600
Query: 596 ITIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQI 655
+TIAS ++ +GQEAKRRIE+LT SV++GKVY G VL+L DFGAI++++ GKDGLLHISQI
Sbjct: 601 VTIASVDAAAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVMPGKDGLLHISQI 660
Query: 656 SSKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+++RVN + D+LKE Q+VRVKVL DDRGR+KLSM
Sbjct: 661 ANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSM 695
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Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3'- to 5'-direction. Herminiimonas arsenicoxydans (taxid: 204773) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 8 |
| >sp|A6SY02|PNP_JANMA Polyribonucleotide nucleotidyltransferase OS=Janthinobacterium sp. (strain Marseille) GN=pnp PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2SZN9|PNP_BURTA Polyribonucleotide nucleotidyltransferase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=pnp PE=3 SV=1 | Back alignment and function description |
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| >sp|Q63VN7|PNP_BURPS Polyribonucleotide nucleotidyltransferase OS=Burkholderia pseudomallei (strain K96243) GN=pnp PE=3 SV=1 | Back alignment and function description |
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| >sp|A3N7L3|PNP_BURP6 Polyribonucleotide nucleotidyltransferase OS=Burkholderia pseudomallei (strain 668) GN=pnp PE=3 SV=1 | Back alignment and function description |
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| >sp|Q3JUB3|PNP_BURP1 Polyribonucleotide nucleotidyltransferase OS=Burkholderia pseudomallei (strain 1710b) GN=pnp PE=3 SV=1 | Back alignment and function description |
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| >sp|A3NTA2|PNP_BURP0 Polyribonucleotide nucleotidyltransferase OS=Burkholderia pseudomallei (strain 1106a) GN=pnp PE=3 SV=1 | Back alignment and function description |
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| >sp|A9AJP0|PNP_BURM1 Polyribonucleotide nucleotidyltransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=pnp PE=3 SV=1 | Back alignment and function description |
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| >sp|A1V2L2|PNP_BURMS Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei (strain SAVP1) GN=pnp PE=3 SV=1 | Back alignment and function description |
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| >sp|Q62IN1|PNP_BURMA Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei (strain ATCC 23344) GN=pnp PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 692 | ||||||
| 399020444 | 712 | polyribonucleotide nucleotidyltransferas | 0.997 | 0.969 | 0.662 | 0.0 | |
| 340788246 | 714 | polyribonucleotide nucleotidyltransferas | 0.997 | 0.966 | 0.661 | 0.0 | |
| 134095034 | 710 | polynucleotide phosphorylase [Herminiimo | 0.997 | 0.971 | 0.656 | 0.0 | |
| 395763186 | 705 | polynucleotide phosphorylase/polyadenyla | 0.997 | 0.978 | 0.657 | 0.0 | |
| 409405576 | 711 | polyribonucleotide nucleotidyltransferas | 0.997 | 0.970 | 0.649 | 0.0 | |
| 152979779 | 711 | polynucleotide phosphorylase [Janthinoba | 0.997 | 0.970 | 0.653 | 0.0 | |
| 300311084 | 712 | polyribonucleotide nucleotidyltransferas | 0.997 | 0.969 | 0.648 | 0.0 | |
| 445498215 | 707 | polyribonucleotide nucleotidyltransferas | 0.997 | 0.975 | 0.654 | 0.0 | |
| 415924064 | 711 | polyribonucleotide nucleotidyltransferas | 0.997 | 0.970 | 0.646 | 0.0 | |
| 237747627 | 713 | polyribonucleotide nucleotidyltransferas | 0.997 | 0.967 | 0.648 | 0.0 |
| >gi|399020444|ref|ZP_10722574.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp. CF444] gi|398094859|gb|EJL85213.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 980 bits (2534), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/694 (66%), Positives = 574/694 (82%), Gaps = 4/694 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF + K+F+YG +++++E GEIARQA+ +V+VSIEDTV+LATVV+ KD +FFPLT
Sbjct: 1 MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSIEDTVVLATVVARKDAKPGQDFFPLT 60
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDYIEK YAAGRIPG FFKREGKPSE+ET+ SRLIDRPIRPLFPEGYLNE+Q++V+VLSV
Sbjct: 61 VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIVHVLSV 120
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+IDPDIA++IG S ALSI+ +PF GP+G A+VGYIDG+YILNPT QLK S LDL+VA
Sbjct: 121 NPEIDPDIAAMIGSSAALSIAGIPFNGPVGAARVGYIDGQYILNPTATQLKTSQLDLVVA 180
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE++QL E+++L A++FGHE+ K INAI+ELV++ G+ +V W P K++
Sbjct: 181 GTETAVLMVESEAQQLSEEVMLGAVVFGHEQSKAVINAIHELVRDGGKPEVQWAPPAKNE 240
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDI----YSSLIDNENLTIDINDINC 296
LI+++ +++ K+R+AYQ K+KQ R K ++ ++ + D ++
Sbjct: 241 PLIARVTELADGKLREAYQTKDKQARTEKLKTVTSEVNAALAADAAAAGTSAADSAEVGG 300
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL+DLE+KI+R QILD RID R +RPI+IRTG+LPRTHGS+LFTRG+TQALV+AT
Sbjct: 301 ILFDLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIAT 360
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVL 416
LGT+RDEQKIDALMGE++D FMLHYNMPPFATG+ GR+G PKRREIGHGRLAKRAL+ L
Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420
Query: 417 PNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKV 476
P +F+YS+RLVSEITESNGSSSMASVCGGCLAL+DAGVP+ HVAGIAMGLIK+G K
Sbjct: 421 PPAEEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQSHVAGIAMGLIKEGNKF 480
Query: 477 VILSDILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILE 536
+L+DILGDED GDMDFKVAGT NGITALQMDIKI GIT +I+Q+AL +AK+G +IL
Sbjct: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRVHILG 540
Query: 537 KMKTEVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGII 596
KM+ VP K ELS FAPRLITIKI+P KIRDVIGKGG+ IR LTEETGTQIDI+DEG++
Sbjct: 541 KMQEAVPAGKAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV 600
Query: 597 TIASFNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQIS 656
TIAS ++ +GQEAKRRIE+LT SV++GKVY G VL+L DFGAI+++L GKDGLLHISQI+
Sbjct: 601 TIASVDAAAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA 660
Query: 657 SKRVNIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
++RVN + D+LKE Q+VRVKVL DDRGR+KLSM
Sbjct: 661 NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSM 694
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Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|340788246|ref|YP_004753711.1| polyribonucleotide nucleotidyltransferase [Collimonas fungivorans Ter331] gi|340553513|gb|AEK62888.1| Polyribonucleotide nucleotidyltransferase [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
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| >gi|134095034|ref|YP_001100109.1| polynucleotide phosphorylase [Herminiimonas arsenicoxydans] gi|187610275|sp|A4G647.1|PNP_HERAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|133738937|emb|CAL61984.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
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| >gi|395763186|ref|ZP_10443855.1| polynucleotide phosphorylase/polyadenylase [Janthinobacterium lividum PAMC 25724] | Back alignment and taxonomy information |
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| >gi|409405576|ref|ZP_11254038.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp. GW103] gi|386434125|gb|EIJ46950.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
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| >gi|152979779|ref|YP_001353149.1| polynucleotide phosphorylase [Janthinobacterium sp. Marseille] gi|187610276|sp|A6SY02.1|PNP_JANMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName: Full=Polynucleotide phosphorylase; Short=PNPase gi|151279856|gb|ABR88266.1| polyribonucleotide nucleotidyltransferase [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
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| >gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum seropedicae SmR1] gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
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| >gi|445498215|ref|ZP_21465070.1| polyribonucleotide nucleotidyltransferase Pnp [Janthinobacterium sp. HH01] gi|444788210|gb|ELX09758.1| polyribonucleotide nucleotidyltransferase Pnp [Janthinobacterium sp. HH01] | Back alignment and taxonomy information |
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| >gi|415924064|ref|ZP_11554830.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum frisingense GSF30] gi|407760420|gb|EKF69718.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum frisingense GSF30] | Back alignment and taxonomy information |
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| >gi|237747627|ref|ZP_04578107.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes OXCC13] gi|229378989|gb|EEO29080.1| polyribonucleotide nucleotidyltransferase [Oxalobacter formigenes OXCC13] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 692 | ||||||
| TIGR_CMR|CPS_2207 | 705 | CPS_2207 "polyribonucleotide n | 0.995 | 0.977 | 0.549 | 4.7e-206 | |
| UNIPROTKB|P05055 | 711 | pnp "polynucleotide phosphoryl | 0.995 | 0.969 | 0.549 | 1.8e-204 | |
| TIGR_CMR|SO_1209 | 699 | SO_1209 "polyribonucleotide nu | 0.988 | 0.978 | 0.544 | 1.1e-199 | |
| UNIPROTKB|Q9KU76 | 709 | pnp "Polyribonucleotide nucleo | 0.989 | 0.966 | 0.540 | 1.6e-198 | |
| TIGR_CMR|VC_0647 | 709 | VC_0647 "polyribonucleotide nu | 0.989 | 0.966 | 0.540 | 1.6e-198 | |
| TIGR_CMR|CBU_0852 | 696 | CBU_0852 "polyribonucleotide n | 0.991 | 0.985 | 0.528 | 1.7e-194 | |
| UNIPROTKB|Q3IJ73 | 708 | pnp "Polyribonucleotide nucleo | 0.986 | 0.964 | 0.545 | 4.4e-194 | |
| TIGR_CMR|GSU_1593 | 697 | GSU_1593 "polyribonucleotide n | 0.978 | 0.971 | 0.497 | 3.6e-169 | |
| UNIPROTKB|Q0BWM9 | 713 | pnp "Polyribonucleotide nucleo | 0.992 | 0.963 | 0.475 | 9.4e-169 | |
| TIGR_CMR|SPO_3389 | 714 | SPO_3389 "polyribonucleotide n | 0.989 | 0.959 | 0.479 | 5.4e-166 |
| TIGR_CMR|CPS_2207 CPS_2207 "polyribonucleotide nucleotidyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1993 (706.6 bits), Expect = 4.7e-206, P = 4.7e-206
Identities = 379/690 (54%), Positives = 517/690 (74%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
M I K F+ G + +++E G IARQA+++V+ S++DT +L +VV K+ +FFPLT
Sbjct: 1 MLNPITKKFQLGKHTVTLETGAIARQASAAVMASMDDTCVLVSVVGKKEAKPGQDFFPLT 60
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
V+Y E+AYAAG+IPGSFFKREG+PSE ET+I+RLIDRPIRPLFPEG+ NE+Q+++ V+SV
Sbjct: 61 VNYQERAYAAGKIPGSFFKREGRPSEEETLIARLIDRPIRPLFPEGFTNEVQVIITVVSV 120
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NP+I PDI S+IG S AL+IS LPF GP+G A+VGY DG+YILNP +L S LDL+V+
Sbjct: 121 NPEIAPDIISLIGTSAALAISGLPFSGPVGAARVGYTDGQYILNPLQSELPTSQLDLVVS 180
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GT+ A++ VESE+ L E+++L A+++GHE+M++A++AI E V +W VK+
Sbjct: 181 GTDSAVLMVESEADVLSEEVMLGAVVYGHEQMQVAVSAIKEFKAEVNTPSWDWVAPVKNA 240
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
L++KI +SE ++ +AYQI K +R K I + +L+ EN +D+ + + +D
Sbjct: 241 ELLAKIAELSEAQVNEAYQITEKAVRYEKIKEIRSSVLEALLA-ENADVDVQEAKDLFHD 299
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
LE ++R +I D RID R IR + + TG+LPRTHGS++FTRG+TQALV ATLGT
Sbjct: 300 LEKTVVRGRITDGNPRIDGRDPESIRALDVMTGVLPRTHGSAVFTRGETQALVTATLGTQ 359
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
RD Q++D LMG+ TD FMLHYN PP+ G+ G +G PKRREIGHGRLAKR +L V+P+
Sbjct: 360 RDAQRLDTLMGDKTDPFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGMLAVMPSLE 419
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+GEK V+LS
Sbjct: 420 EFPYAVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGEKFVVLS 479
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT GITALQMDIKI GIT +I+QIAL +AK ++IL M
Sbjct: 480 DILGDEDHLGDMDFKVAGTTGGITALQMDIKIEGITQEIMQIALNQAKAARTHILSVMDE 539
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ ++++S+FAPR+ T+K+ KIRD+IGKGG+TIR LTEETGT I+I D+G + IA+
Sbjct: 540 AIGGHRDDISEFAPRIHTMKVSQDKIRDIIGKGGATIRQLTEETGTTIEIEDDGTVKIAA 599
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
+ ++A RI+ LT +++G +YTG V+R+ DFGA + +L GKDGL+HISQIS +RV
Sbjct: 600 TSGEQAEDAINRIKALTAEIEVGTLYTGKVVRIVDFGAFVNVLPGKDGLVHISQISEERV 659
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
N +++ L E Q+V+VKVL +D +GR++LS+
Sbjct: 660 NNVSEVLTEGQEVKVKVLEVDRQGRVRLSI 689
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| UNIPROTKB|P05055 pnp "polynucleotide phosphorylase monomer" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|SO_1209 SO_1209 "polyribonucleotide nucleotidyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9KU76 pnp "Polyribonucleotide nucleotidyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
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| TIGR_CMR|VC_0647 VC_0647 "polyribonucleotide nucleotidyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CBU_0852 CBU_0852 "polyribonucleotide nucleotidyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q3IJ73 pnp "Polyribonucleotide nucleotidyltransferase" [Pseudoalteromonas haloplanktis TAC125 (taxid:326442)] | Back alignment and assigned GO terms |
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| TIGR_CMR|GSU_1593 GSU_1593 "polyribonucleotide nucleotidyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q0BWM9 pnp "Polyribonucleotide nucleotidyltransferase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SPO_3389 SPO_3389 "polyribonucleotide nucleotidyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A9IGJ9 | PNP_BORPD | 2, ., 7, ., 7, ., 8 | 0.6080 | 0.9971 | 0.9596 | yes | N/A |
| A1W4L8 | PNP_ACISJ | 2, ., 7, ., 7, ., 8 | 0.5985 | 0.9956 | 0.9477 | yes | N/A |
| Q1LPW7 | PNP_RALME | 2, ., 7, ., 7, ., 8 | 0.5942 | 0.9956 | 0.9503 | yes | N/A |
| B4E5M6 | PNP_BURCJ | 2, ., 7, ., 7, ., 8 | 0.5974 | 0.9956 | 0.9663 | yes | N/A |
| Q21YD1 | PNP_RHOFD | 2, ., 7, ., 7, ., 8 | 0.5913 | 0.9956 | 0.9759 | yes | N/A |
| Q7VZU0 | PNP_BORPE | 2, ., 7, ., 7, ., 8 | 0.6066 | 0.9971 | 0.9596 | yes | N/A |
| C5CT24 | PNP_VARPS | 2, ., 7, ., 7, ., 8 | 0.5898 | 0.9956 | 0.8924 | yes | N/A |
| Q7WCQ0 | PNP_BORBR | 2, ., 7, ., 7, ., 8 | 0.6066 | 0.9971 | 0.9596 | yes | N/A |
| A1K7B5 | PNP_AZOSB | 2, ., 7, ., 7, ., 8 | 0.5903 | 0.9913 | 0.9814 | yes | N/A |
| Q5NZR7 | PNP_AROAE | 2, ., 7, ., 7, ., 8 | 0.5743 | 0.9913 | 0.9814 | yes | N/A |
| Q2Y5X9 | PNP_NITMU | 2, ., 7, ., 7, ., 8 | 0.5889 | 0.9913 | 0.9786 | yes | N/A |
| Q39EE1 | PNP_BURS3 | 2, ., 7, ., 7, ., 8 | 0.5959 | 0.9956 | 0.9636 | yes | N/A |
| B9MEL0 | PNP_ACIET | 2, ., 7, ., 7, ., 8 | 0.6 | 0.9956 | 0.9477 | yes | N/A |
| Q3JUB3 | PNP_BURP1 | 2, ., 7, ., 7, ., 8 | 0.6060 | 0.9956 | 0.9663 | yes | N/A |
| B2JDN2 | PNP_BURP8 | 2, ., 7, ., 7, ., 8 | 0.5959 | 0.9956 | 0.9676 | yes | N/A |
| B1YTR1 | PNP_BURA4 | 2, ., 7, ., 7, ., 8 | 0.5974 | 0.9956 | 0.9649 | yes | N/A |
| Q7W570 | PNP_BORPA | 2, ., 7, ., 7, ., 8 | 0.6066 | 0.9971 | 0.9596 | yes | N/A |
| Q2KWI6 | PNP_BORA1 | 2, ., 7, ., 7, ., 8 | 0.6023 | 0.9971 | 0.9610 | yes | N/A |
| A9BNB8 | PNP_DELAS | 2, ., 7, ., 7, ., 8 | 0.5855 | 0.9956 | 0.9150 | yes | N/A |
| Q62IN1 | PNP_BURMA | 2, ., 7, ., 7, ., 8 | 0.6060 | 0.9956 | 0.9663 | yes | N/A |
| Q3SKX5 | PNP_THIDA | 2, ., 7, ., 7, ., 8 | 0.5830 | 0.9898 | 0.9702 | yes | N/A |
| B3R3W3 | PNP_CUPTR | 2, ., 7, ., 7, ., 8 | 0.5971 | 0.9956 | 0.9529 | yes | N/A |
| B1Y823 | PNP_LEPCP | 2, ., 7, ., 7, ., 8 | 0.5942 | 0.9956 | 0.8983 | yes | N/A |
| A9AJP0 | PNP_BURM1 | 2, ., 7, ., 7, ., 8 | 0.6046 | 0.9956 | 0.9636 | yes | N/A |
| A4JGD4 | PNP_BURVG | 2, ., 7, ., 7, ., 8 | 0.5988 | 0.9956 | 0.9636 | yes | N/A |
| A1TLL2 | PNP_ACIAC | 2, ., 7, ., 7, ., 8 | 0.6057 | 0.9956 | 0.9089 | yes | N/A |
| Q1GXD2 | PNP_METFK | 2, ., 7, ., 7, ., 8 | 0.6072 | 0.9898 | 0.9593 | yes | N/A |
| B2T2E3 | PNP_BURPP | 2, ., 7, ., 7, ., 8 | 0.5930 | 0.9956 | 0.9596 | yes | N/A |
| Q1BV09 | PNP_BURCA | 2, ., 7, ., 7, ., 8 | 0.5945 | 0.9956 | 0.9636 | yes | N/A |
| A1VM56 | PNP_POLNA | 2, ., 7, ., 7, ., 8 | 0.5927 | 0.9956 | 0.9800 | yes | N/A |
| Q63VN7 | PNP_BURPS | 2, ., 7, ., 7, ., 8 | 0.6060 | 0.9956 | 0.9663 | yes | N/A |
| A2S463 | PNP_BURM9 | 2, ., 7, ., 7, ., 8 | 0.6060 | 0.9956 | 0.9663 | yes | N/A |
| A4SXQ7 | PNP_POLSQ | 2, ., 7, ., 7, ., 8 | 0.5826 | 0.9942 | 0.9529 | yes | N/A |
| Q473U7 | PNP_CUPPJ | 2, ., 7, ., 7, ., 8 | 0.5927 | 0.9956 | 0.9464 | yes | N/A |
| A3N7L3 | PNP_BURP6 | 2, ., 7, ., 7, ., 8 | 0.6060 | 0.9956 | 0.9663 | yes | N/A |
| A3MI97 | PNP_BURM7 | 2, ., 7, ., 7, ., 8 | 0.6060 | 0.9956 | 0.9663 | yes | N/A |
| Q142H7 | PNP_BURXL | 2, ., 7, ., 7, ., 8 | 0.5930 | 0.9956 | 0.9622 | yes | N/A |
| A6SY02 | PNP_JANMA | 2, ., 7, ., 7, ., 8 | 0.6532 | 0.9971 | 0.9704 | yes | N/A |
| Q0KCT4 | PNP_CUPNH | 2, ., 7, ., 7, ., 8 | 0.5956 | 0.9956 | 0.9529 | yes | N/A |
| Q8XXP6 | PNP_RALSO | 2, ., 7, ., 7, ., 8 | 0.5927 | 0.9956 | 0.9609 | yes | N/A |
| A0K927 | PNP_BURCH | 2, ., 7, ., 7, ., 8 | 0.5945 | 0.9956 | 0.9636 | yes | N/A |
| Q2SZN9 | PNP_BURTA | 2, ., 7, ., 7, ., 8 | 0.6060 | 0.9956 | 0.9663 | yes | N/A |
| B1JVP5 | PNP_BURCC | 2, ., 7, ., 7, ., 8 | 0.5945 | 0.9956 | 0.9636 | yes | N/A |
| B2U7R6 | PNP_RALPJ | 2, ., 7, ., 7, ., 8 | 0.5898 | 0.9956 | 0.9516 | yes | N/A |
| Q0BDC6 | PNP_BURCM | 2, ., 7, ., 7, ., 8 | 0.5974 | 0.9956 | 0.9649 | yes | N/A |
| A3NTA2 | PNP_BURP0 | 2, ., 7, ., 7, ., 8 | 0.6060 | 0.9956 | 0.9663 | yes | N/A |
| A2SFM2 | PNP_METPP | 2, ., 7, ., 7, ., 8 | 0.6028 | 0.9956 | 0.9174 | yes | N/A |
| A1V2L2 | PNP_BURMS | 2, ., 7, ., 7, ., 8 | 0.6060 | 0.9956 | 0.9663 | yes | N/A |
| Q127W8 | PNP_POLSJ | 2, ., 7, ., 7, ., 8 | 0.5913 | 0.9956 | 0.9745 | yes | N/A |
| A4G647 | PNP_HERAR | 2, ., 7, ., 7, ., 8 | 0.6561 | 0.9971 | 0.9718 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.7.7.8 | 0.991 |
| 3rd Layer | 2.7.7 | 0.976 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 692 | |||
| PRK11824 | 693 | PRK11824, PRK11824, polynucleotide phosphorylase/p | 0.0 | |
| TIGR03591 | 684 | TIGR03591, polynuc_phos, polyribonucleotide nucleo | 0.0 | |
| COG1185 | 692 | COG1185, Pnp, Polyribonucleotide nucleotidyltransf | 0.0 | |
| PLN00207 | 891 | PLN00207, PLN00207, polyribonucleotide nucleotidyl | 0.0 | |
| TIGR02696 | 719 | TIGR02696, pppGpp_PNP, guanosine pentaphosphate sy | 0.0 | |
| cd11364 | 223 | cd11364, RNase_PH_PNPase_2, Polyribonucleotide nuc | 1e-135 | |
| cd11363 | 229 | cd11363, RNase_PH_PNPase_1, Polyribonucleotide nuc | 1e-111 | |
| pfam01138 | 129 | pfam01138, RNase_PH, 3' exoribonuclease family, do | 1e-32 | |
| cd11358 | 218 | cd11358, RNase_PH, RNase PH-like 3'-5' exoribonucl | 2e-30 | |
| pfam01138 | 129 | pfam01138, RNase_PH, 3' exoribonuclease family, do | 5e-27 | |
| PRK03983 | 244 | PRK03983, PRK03983, exosome complex exonuclease Rr | 3e-26 | |
| TIGR02065 | 230 | TIGR02065, ECX1, archaeal exosome-like complex exo | 2e-24 | |
| cd04472 | 68 | cd04472, S1_PNPase, S1_PNPase: Polynucleotide phos | 2e-23 | |
| COG0689 | 230 | COG0689, Rph, RNase PH [Translation, ribosomal str | 3e-22 | |
| cd11366 | 214 | cd11366, RNase_PH_archRRP41, RRP41 subunit of arch | 6e-22 | |
| cd05692 | 69 | cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: R | 9e-20 | |
| cd02393 | 61 | cd02393, PNPase_KH, Polynucleotide phosphorylase ( | 2e-19 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 8e-18 | |
| PRK06676 | 390 | PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | 1e-16 | |
| smart00316 | 72 | smart00316, S1, Ribosomal protein S1-like RNA-bind | 8e-16 | |
| cd11358 | 218 | cd11358, RNase_PH, RNase PH-like 3'-5' exoribonucl | 1e-15 | |
| PRK05807 | 136 | PRK05807, PRK05807, hypothetical protein; Provisio | 1e-15 | |
| cd05684 | 79 | cd05684, S1_DHX8_helicase, S1_DHX8_helicase: The N | 2e-15 | |
| COG1098 | 129 | COG1098, VacB, Predicted RNA binding protein (cont | 3e-15 | |
| PRK00087 | 647 | PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d | 4e-15 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 1e-14 | |
| PRK00087 | 647 | PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl d | 4e-14 | |
| cd05688 | 68 | cd05688, S1_RPS1_repeat_ec3, S1_RPS1_repeat_ec3: R | 4e-14 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 5e-14 | |
| pfam00575 | 74 | pfam00575, S1, S1 RNA binding domain | 1e-13 | |
| cd11370 | 226 | cd11370, RNase_PH_RRP41, RRP41 subunit of eukaryot | 3e-13 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 6e-13 | |
| cd00164 | 65 | cd00164, S1_like, S1_like: Ribosomal protein S1-li | 2e-12 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 6e-12 | |
| pfam03726 | 80 | pfam03726, PNPase, Polyribonucleotide nucleotidylt | 3e-11 | |
| PRK13806 | 491 | PRK13806, rpsA, 30S ribosomal protein S1; Provisio | 3e-11 | |
| cd05685 | 68 | cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain | 6e-11 | |
| PRK03987 | 262 | PRK03987, PRK03987, translation initiation factor | 5e-10 | |
| cd04452 | 76 | cd04452, S1_IF2_alpha, S1_IF2_alpha: The alpha sub | 6e-10 | |
| PRK08059 | 123 | PRK08059, PRK08059, general stress protein 13; Val | 9e-10 | |
| COG1093 | 269 | COG1093, SUI2, Translation initiation factor 2, al | 1e-09 | |
| cd11372 | 199 | cd11372, RNase_PH_RRP46, RRP46 subunit of eukaryot | 1e-09 | |
| PRK08582 | 139 | PRK08582, PRK08582, hypothetical protein; Provisio | 2e-09 | |
| PRK13806 | 491 | PRK13806, rpsA, 30S ribosomal protein S1; Provisio | 3e-09 | |
| PRK04282 | 271 | PRK04282, PRK04282, exosome complex RNA-binding pr | 4e-09 | |
| PRK07899 | 486 | PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | 6e-09 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 7e-09 | |
| pfam00013 | 59 | pfam00013, KH_1, KH domain | 7e-09 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 1e-08 | |
| TIGR01966 | 236 | TIGR01966, RNasePH, ribonuclease PH | 1e-08 | |
| COG2183 | 780 | COG2183, Tex, Transcriptional accessory protein [T | 3e-08 | |
| pfam03725 | 68 | pfam03725, RNase_PH_C, 3' exoribonuclease family, | 3e-08 | |
| cd00105 | 64 | cd00105, KH-I, K homology RNA-binding domain, type | 4e-08 | |
| cd05708 | 77 | cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: | 6e-08 | |
| PRK06299 | 565 | PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | 8e-08 | |
| cd11362 | 227 | cd11362, RNase_PH_bact, Ribonuclease PH | 9e-08 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 2e-07 | |
| cd11365 | 256 | cd11365, RNase_PH_archRRP42, RRP42 subunit of arch | 2e-07 | |
| cd05686 | 73 | cd05686, S1_pNO40, S1_pNO40: pNO40 , S1-like RNA-b | 2e-07 | |
| COG2123 | 272 | COG2123, COG2123, RNase PH-related exoribonuclease | 4e-07 | |
| cd04461 | 83 | cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs | 5e-07 | |
| PRK07899 | 486 | PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | 1e-06 | |
| smart00322 | 68 | smart00322, KH, K homology RNA-binding domain | 3e-06 | |
| COG0539 | 541 | COG0539, RpsA, Ribosomal protein S1 [Translation, | 8e-06 | |
| cd05690 | 69 | cd05690, S1_RPS1_repeat_ec5, S1_RPS1_repeat_ec5: R | 1e-05 | |
| PRK07400 | 318 | PRK07400, PRK07400, 30S ribosomal protein S1; Revi | 1e-05 | |
| PRK12269 | 863 | PRK12269, PRK12269, bifunctional cytidylate kinase | 3e-05 | |
| cd11363 | 229 | cd11363, RNase_PH_PNPase_1, Polyribonucleotide nuc | 5e-05 | |
| COG0689 | 230 | COG0689, Rph, RNase PH [Translation, ribosomal str | 5e-05 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 1e-04 | |
| cd02394 | 62 | cd02394, vigilin_like_KH, K homology RNA-binding d | 2e-04 | |
| cd11371 | 210 | cd11371, RNase_PH_MTR3, MTR3 subunit of eukaryotic | 3e-04 | |
| PRK04163 | 235 | PRK04163, PRK04163, exosome complex RNA-binding pr | 3e-04 | |
| cd04453 | 88 | cd04453, S1_RNase_E, S1_RNase_E: RNase E and RNase | 5e-04 | |
| PRK07252 | 120 | PRK07252, PRK07252, hypothetical protein; Provisio | 5e-04 | |
| TIGR00717 | 516 | TIGR00717, rpsA, ribosomal protein S1 | 6e-04 | |
| cd11367 | 272 | cd11367, RNase_PH_RRP42, RRP42 subunit of eukaryot | 6e-04 | |
| cd05691 | 73 | cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: R | 9e-04 | |
| pfam03725 | 68 | pfam03725, RNase_PH_C, 3' exoribonuclease family, | 0.001 | |
| PRK12269 | 863 | PRK12269, PRK12269, bifunctional cytidylate kinase | 0.001 | |
| cd05698 | 70 | cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs | 0.001 | |
| PRK00173 | 238 | PRK00173, rph, ribonuclease PH; Reviewed | 0.001 | |
| cd04473 | 77 | cd04473, S1_RecJ_like, S1_RecJ_like: The S1 domain | 0.001 | |
| PRK13763 | 180 | PRK13763, PRK13763, putative RNA-processing protei | 0.002 | |
| pfam13014 | 42 | pfam13014, KH_3, KH domain | 0.002 | |
| cd05689 | 72 | cd05689, S1_RPS1_repeat_ec4, S1_RPS1_repeat_ec4: R | 0.002 |
| >gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional | Back alignment and domain information |
|---|
Score = 1117 bits (2891), Expect = 0.0
Identities = 394/690 (57%), Positives = 518/690 (75%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
MF I+KS ++G +++E G++ARQA +VLV DTV+L TVV+ K+P +FFPLT
Sbjct: 1 MFNKIVKSIEFGGRTLTLETGKLARQANGAVLVRYGDTVVLVTVVASKEPKEGQDFFPLT 60
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
VDY EK YAAG+IPG FFKREG+PSE+ET+ SRLIDRPIRPLFP+G+ NE+Q+V VLSV
Sbjct: 61 VDYEEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPKGFRNEVQVVATVLSV 120
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
+P+ DPDI ++IG S ALSIS +PF GP+ +VGYIDG+++LNPT E+L++S LDL+VA
Sbjct: 121 DPENDPDILAMIGASAALSISGIPFNGPIAAVRVGYIDGEFVLNPTVEELEESDLDLVVA 180
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GT+ A++ VESE+K+L E+++L AI FGHE ++ I+A EL G K W P D+
Sbjct: 181 GTKDAVLMVESEAKELSEEVMLEAIEFGHEAIQELIDAQEELAAEAG-PKWEWQPPEVDE 239
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
L + + ++E K+++AYQI +KQ R+ I +++ +L E D +I
Sbjct: 240 ELKAAVKELAEAKLKEAYQITDKQEREAALDAIKEEVLEALAAEEEEEEDEKEIKEAFKK 299
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
LE KI+R++IL++G+RID R +++IRPISI G+LPRTHGS+LFTRG+TQALVVATLGT
Sbjct: 300 LEKKIVRRRILEEGIRIDGRKLDEIRPISIEVGVLPRTHGSALFTRGETQALVVATLGTL 359
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
RDEQ ID L GE+ FMLHYN PP++ G+ GR+G P RREIGHG LA+RAL PVLP+
Sbjct: 360 RDEQIIDGLEGEYKKRFMLHYNFPPYSVGETGRVGSPGRREIGHGALAERALEPVLPSEE 419
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
+F Y+IR+VSEI ESNGSSSMASVCG LAL+DAGVPI VAGIAMGLIK+G+K +L+
Sbjct: 420 EFPYTIRVVSEILESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLIKEGDKYAVLT 479
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAGT +GITALQMDIKI GIT +I++ AL +AK+G +IL KM
Sbjct: 480 DILGDEDHLGDMDFKVAGTRDGITALQMDIKIDGITREILEEALEQAKEGRLHILGKMNE 539
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + + ELS +APR+ TIKI P KIRDVIG GG TIR +TEETG +IDI D+G + IA+
Sbjct: 540 AISEPRAELSPYAPRIETIKIPPDKIRDVIGPGGKTIREITEETGAKIDIEDDGTVKIAA 599
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
+ + + AK RIE +T ++G++Y G V+R+ DFGA + IL GKDGL+HIS+I+ +RV
Sbjct: 600 TDGEAAEAAKERIEGITAEPEVGEIYEGKVVRIVDFGAFVEILPGKDGLVHISEIADERV 659
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+ D LKE +V+VKVL ID RGRI+LS
Sbjct: 660 EKVEDVLKEGDEVKVKVLEIDKRGRIRLSR 689
|
Length = 693 |
| >gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|215104 PLN00207, PLN00207, polyribonucleotide nucleotidyltransferase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|131743 TIGR02696, pppGpp_PNP, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase | Back alignment and domain information |
|---|
| >gnl|CDD|206769 cd11364, RNase_PH_PNPase_2, Polyribonucleotide nucleotidyltransferase, repeat 2 | Back alignment and domain information |
|---|
| >gnl|CDD|206768 cd11363, RNase_PH_PNPase_1, Polyribonucleotide nucleotidyltransferase, repeat 1 | Back alignment and domain information |
|---|
| >gnl|CDD|216323 pfam01138, RNase_PH, 3' exoribonuclease family, domain 1 | Back alignment and domain information |
|---|
| >gnl|CDD|206766 cd11358, RNase_PH, RNase PH-like 3'-5' exoribonucleases | Back alignment and domain information |
|---|
| >gnl|CDD|216323 pfam01138, RNase_PH, 3' exoribonuclease family, domain 1 | Back alignment and domain information |
|---|
| >gnl|CDD|235187 PRK03983, PRK03983, exosome complex exonuclease Rrp41; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|131120 TIGR02065, ECX1, archaeal exosome-like complex exonuclease 1 | Back alignment and domain information |
|---|
| >gnl|CDD|239918 cd04472, S1_PNPase, S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|223761 COG0689, Rph, RNase PH [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|206771 cd11366, RNase_PH_archRRP41, RRP41 subunit of archaeal exosome | Back alignment and domain information |
|---|
| >gnl|CDD|240197 cd05692, S1_RPS1_repeat_hs4, S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
| >gnl|CDD|239086 cd02393, PNPase_KH, Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) | Back alignment and domain information |
|---|
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|197648 smart00316, S1, Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|206766 cd11358, RNase_PH, RNase PH-like 3'-5' exoribonucleases | Back alignment and domain information |
|---|
| >gnl|CDD|235614 PRK05807, PRK05807, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240189 cd05684, S1_DHX8_helicase, S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide | Back alignment and domain information |
|---|
| >gnl|CDD|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|240193 cd05688, S1_RPS1_repeat_ec3, S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|216000 pfam00575, S1, S1 RNA binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|206775 cd11370, RNase_PH_RRP41, RRP41 subunit of eukaryotic exosome | Back alignment and domain information |
|---|
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|238094 cd00164, S1_like, S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
| >gnl|CDD|217697 pfam03726, PNPase, Polyribonucleotide nucleotidyltransferase, RNA binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240190 cd05685, S1_Tex, S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa | Back alignment and domain information |
|---|
| >gnl|CDD|235188 PRK03987, PRK03987, translation initiation factor IF-2 subunit alpha; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|239899 cd04452, S1_IF2_alpha, S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|181215 PRK08059, PRK08059, general stress protein 13; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|224018 COG1093, SUI2, Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|206777 cd11372, RNase_PH_RRP46, RRP46 subunit of eukaryotic exosome | Back alignment and domain information |
|---|
| >gnl|CDD|236305 PRK08582, PRK08582, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237516 PRK13806, rpsA, 30S ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235268 PRK04282, PRK04282, exosome complex RNA-binding protein Rrp42; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236126 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|215657 pfam00013, KH_1, KH domain | Back alignment and domain information |
|---|
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|131021 TIGR01966, RNasePH, ribonuclease PH | Back alignment and domain information |
|---|
| >gnl|CDD|225094 COG2183, Tex, Transcriptional accessory protein [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|217696 pfam03725, RNase_PH_C, 3' exoribonuclease family, domain 2 | Back alignment and domain information |
|---|
| >gnl|CDD|238053 cd00105, KH-I, K homology RNA-binding domain, type I | Back alignment and domain information |
|---|
| >gnl|CDD|240213 cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
| >gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|206767 cd11362, RNase_PH_bact, Ribonuclease PH | Back alignment and domain information |
|---|
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
| >gnl|CDD|206770 cd11365, RNase_PH_archRRP42, RRP42 subunit of archaeal exosome | Back alignment and domain information |
|---|
| >gnl|CDD|240191 cd05686, S1_pNO40, S1_pNO40: pNO40 , S1-like RNA-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|225034 COG2123, COG2123, RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|239908 cd04461, S1_Rrp5_repeat_hs8_sc7, S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
| >gnl|CDD|236126 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|197652 smart00322, KH, K homology RNA-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|223613 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|240195 cd05690, S1_RPS1_repeat_ec5, S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
| >gnl|CDD|180960 PRK07400, PRK07400, 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|206768 cd11363, RNase_PH_PNPase_1, Polyribonucleotide nucleotidyltransferase, repeat 1 | Back alignment and domain information |
|---|
| >gnl|CDD|223761 COG0689, Rph, RNase PH [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
| >gnl|CDD|239087 cd02394, vigilin_like_KH, K homology RNA-binding domain_vigilin_like | Back alignment and domain information |
|---|
| >gnl|CDD|206776 cd11371, RNase_PH_MTR3, MTR3 subunit of eukaryotic exosome | Back alignment and domain information |
|---|
| >gnl|CDD|235233 PRK04163, PRK04163, exosome complex RNA-binding protein Rrp4; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|239900 cd04453, S1_RNase_E, S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|180908 PRK07252, PRK07252, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233102 TIGR00717, rpsA, ribosomal protein S1 | Back alignment and domain information |
|---|
| >gnl|CDD|206772 cd11367, RNase_PH_RRP42, RRP42 subunit of eukaryotic exosome | Back alignment and domain information |
|---|
| >gnl|CDD|240196 cd05691, S1_RPS1_repeat_ec6, S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
| >gnl|CDD|217696 pfam03725, RNase_PH_C, 3' exoribonuclease family, domain 2 | Back alignment and domain information |
|---|
| >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240203 cd05698, S1_Rrp5_repeat_hs6_sc5, S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
| >gnl|CDD|178914 PRK00173, rph, ribonuclease PH; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|239919 cd04473, S1_RecJ_like, S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease | Back alignment and domain information |
|---|
| >gnl|CDD|237494 PRK13763, PRK13763, putative RNA-processing protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221895 pfam13014, KH_3, KH domain | Back alignment and domain information |
|---|
| >gnl|CDD|240194 cd05689, S1_RPS1_repeat_ec4, S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 692 | ||||
| 3cdi_A | 723 | Crystal Structure Of E. Coli Pnpase Length = 723 | 0.0 | ||
| 4aid_A | 726 | Crystal Structure Of C. Crescentus Pnpase Bound To | 0.0 | ||
| 4aim_A | 726 | Crystal Structure Of C. Crescentus Pnpase Bound To | 0.0 | ||
| 4am3_A | 717 | Crystal Structure Of C. Crescentus Pnpase Bound To | 0.0 | ||
| 3h1c_A | 549 | Crystal Structure Of Polynucleotide Phosphorylase ( | 0.0 | ||
| 3gcm_A | 549 | Crystal Structure Of E. Coli Polynucleotide Phospho | 0.0 | ||
| 3cdj_A | 559 | Crystal Structure Of The E. Coli KhS1 DOMAIN TRUNCA | 0.0 | ||
| 1e3p_A | 757 | Tungstate Derivative Of Streptomyces Antibioticus P | 1e-130 | ||
| 1e3h_A | 757 | Semet Derivative Of Streptomyces Antibioticus Pnpas | 1e-120 | ||
| 3u1k_A | 630 | Crystal Structure Of Human Pnpase Length = 630 | 1e-104 | ||
| 2br2_B | 248 | Rnase Ph Core Of The Archaeal Exosome Length = 248 | 2e-17 | ||
| 3l7z_B | 245 | Crystal Structure Of The S. Solfataricus Archaeal E | 2e-17 | ||
| 3m7n_D | 258 | Archaeoglobus Fulgidus Exosome With Rna Bound To Th | 5e-17 | ||
| 2ba0_F | 258 | Archaeal Exosome Core Length = 258 | 1e-16 | ||
| 2je6_B | 250 | Structure Of A 9-Subunit Archaeal Exosome Length = | 3e-16 | ||
| 1sro_A | 76 | S1 Rna Binding Domain, Nmr, 20 Structures Length = | 4e-16 | ||
| 2wnr_B | 240 | The Structure Of Methanothermobacter Thermautotroph | 2e-15 | ||
| 2pnz_A | 249 | Crystal Structure Of The P. Abyssi Exosome Rnase Ph | 2e-15 | ||
| 1uds_A | 255 | Crystal Structure Of The Trna Processing Enzyme Rna | 5e-10 | ||
| 1udn_A | 255 | Crystal Structure Of The Trna Processing Enzyme Rna | 1e-09 | ||
| 1udq_A | 255 | Crystal Structure Of The Trna Processing Enzyme Rna | 1e-09 | ||
| 1udo_A | 255 | Crystal Structure Of The Trna Processing Enzyme Rna | 2e-09 | ||
| 2nn6_B | 249 | Structure Of The Human Rna Exosome Composed Of Rrp4 | 3e-08 | ||
| 3hkm_A | 246 | Crystal Structure Of Rice(Oryza Sativa) Rrp46 Lengt | 2e-07 | ||
| 3aev_A | 275 | Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex | 3e-07 | ||
| 1yz6_A | 274 | Crystal Structure Of Intact Alpha Subunit Of Aif2 F | 6e-07 | ||
| 3dd6_A | 255 | Crystal Structure Of Rph, An Exoribonuclease From B | 1e-06 | ||
| 1oys_A | 245 | Crystal Structure Of The Phosphorolytic Exoribonucl | 9e-06 | ||
| 1oyp_A | 245 | Crystal Structure Of The Phosphorolytic Exoribonucl | 1e-05 | ||
| 2k4k_A | 130 | Solution Structure Of Gsp13 From Bacillus Subtilis | 1e-05 | ||
| 2oce_A | 780 | Crystal Structure Of Tex Family Protein Pa5201 From | 3e-05 | ||
| 3bzc_A | 785 | Crystal Structure Of The Tex Protein From Pseudomon | 3e-05 | ||
| 2pnz_B | 277 | Crystal Structure Of The P. Abyssi Exosome Rnase Ph | 4e-05 | ||
| 2aho_B | 266 | Structure Of The Archaeal Initiation Factor Eif2 Al | 1e-04 | ||
| 1r6m_A | 239 | Crystal Structure Of The Trna Processing Enzyme Rna | 2e-04 | ||
| 2nn6_D | 237 | Structure Of The Human Rna Exosome Composed Of Rrp4 | 3e-04 | ||
| 1r6l_A | 239 | Crystal Structure Of The Trna Processing Enzyme Rna | 6e-04 |
| >pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase Length = 723 | Back alignment and structure |
|
| >pdb|4AID|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E Recognition Peptide Length = 726 | Back alignment and structure |
| >pdb|4AIM|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E Recognition Peptide Length = 726 | Back alignment and structure |
| >pdb|4AM3|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rna Length = 717 | Back alignment and structure |
| >pdb|3H1C|A Chain A, Crystal Structure Of Polynucleotide Phosphorylase (Pnpase) Core Bound To Rnase E And Tungstate Length = 549 | Back alignment and structure |
| >pdb|3GCM|A Chain A, Crystal Structure Of E. Coli Polynucleotide Phosphorylase Bound To Rna And Rnase E Length = 549 | Back alignment and structure |
| >pdb|3CDJ|A Chain A, Crystal Structure Of The E. Coli KhS1 DOMAIN TRUNCATED Pnpase Length = 559 | Back alignment and structure |
| >pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase Gpsi Enzyme Length = 757 | Back alignment and structure |
| >pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibioticus PnpaseGPSI Enzyme Length = 757 | Back alignment and structure |
| >pdb|3U1K|A Chain A, Crystal Structure Of Human Pnpase Length = 630 | Back alignment and structure |
| >pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome Length = 248 | Back alignment and structure |
| >pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome Length = 245 | Back alignment and structure |
| >pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The Active Site Length = 258 | Back alignment and structure |
| >pdb|2BA0|F Chain F, Archaeal Exosome Core Length = 258 | Back alignment and structure |
| >pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Length = 250 | Back alignment and structure |
| >pdb|1SRO|A Chain A, S1 Rna Binding Domain, Nmr, 20 Structures Length = 76 | Back alignment and structure |
| >pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly Length = 240 | Back alignment and structure |
| >pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Udp And Gmp Length = 249 | Back alignment and structure |
| >pdb|1UDS|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph R126a Mutant From Aquifex Aeolicus Length = 255 | Back alignment and structure |
| >pdb|1UDN|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Aquifex Aeolicus Length = 255 | Back alignment and structure |
| >pdb|1UDQ|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph T125a Mutant From Aquifex Aeolicus Length = 255 | Back alignment and structure |
| >pdb|1UDO|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph R86a Mutant From Aquifex Aeolicus Length = 255 | Back alignment and structure |
| >pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 249 | Back alignment and structure |
| >pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46 Length = 246 | Back alignment and structure |
| >pdb|3AEV|A Chain A, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From Pyrococcus Horikoshii Ot3 Length = 275 | Back alignment and structure |
| >pdb|1YZ6|A Chain A, Crystal Structure Of Intact Alpha Subunit Of Aif2 From Pyrococcus Abyssi Length = 274 | Back alignment and structure |
| >pdb|3DD6|A Chain A, Crystal Structure Of Rph, An Exoribonuclease From Bacillus Anthracis At 1.7 A Resolution Length = 255 | Back alignment and structure |
| >pdb|1OYS|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis Length = 245 | Back alignment and structure |
| >pdb|1OYP|A Chain A, Crystal Structure Of The Phosphorolytic Exoribonuclease Rnase Ph From Bacillus Subtilis Length = 245 | Back alignment and structure |
| >pdb|2K4K|A Chain A, Solution Structure Of Gsp13 From Bacillus Subtilis Length = 130 | Back alignment and structure |
| >pdb|2OCE|A Chain A, Crystal Structure Of Tex Family Protein Pa5201 From Pseudomonas Aeruginosa Length = 780 | Back alignment and structure |
| >pdb|3BZC|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas Aeruginosa, Crystal Form I Length = 785 | Back alignment and structure |
| >pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Udp And Gmp Length = 277 | Back alignment and structure |
| >pdb|2AHO|B Chain B, Structure Of The Archaeal Initiation Factor Eif2 Alpha- Gamma Heterodimer From Sulfolobus Solfataricus Complexed With Gdpnp Length = 266 | Back alignment and structure |
| >pdb|1R6M|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Pseudomonas Aeruginosa In Complex With Phosphate Length = 239 | Back alignment and structure |
| >pdb|2NN6|D Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 237 | Back alignment and structure |
| >pdb|1R6L|A Chain A, Crystal Structure Of The Trna Processing Enzyme Rnase Ph From Pseudomonas Aeruginosa Length = 239 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Length = 723 | Back alignment and structure |
|---|
Score = 1106 bits (2864), Expect = 0.0
Identities = 378/690 (54%), Positives = 528/690 (76%), Gaps = 1/690 (0%)
Query: 1 MFRFILKSFKYGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCKDPTSTYNFFPLT 60
+ I++ F+YG + +++E G +ARQAT++V+VS++DT + TVV K +FFPLT
Sbjct: 7 LLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT 66
Query: 61 VDYIEKAYAAGRIPGSFFKREGKPSERETIISRLIDRPIRPLFPEGYLNEIQIVVYVLSV 120
V+Y E+ YAAGRIPGSFF+REG+PSE ET+I+RLIDRPIRPLFPEG++NE+Q++ V+SV
Sbjct: 67 VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSV 126
Query: 121 NPQIDPDIASIIGVSTALSISELPFLGPLGVAKVGYIDGKYILNPTTEQLKKSHLDLLVA 180
NPQ++PDI ++IG S ALS+S +PF GP+G A+VGYI+ +Y+LNPT ++LK+S LDL+VA
Sbjct: 127 NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA 186
Query: 181 GTEKAIITVESESKQLPEDIILNAIIFGHEKMKIAINAINELVQNVGQKKVNWDPIVKDK 240
GTE A++ VESE++ L ED +L A++FGHE+ ++ I INELV+ G+ + +W P ++
Sbjct: 187 GTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNE 246
Query: 241 TLISKIINISEHKIRKAYQIKNKQIRDLTFKNISKDIYSSLIDNENLTIDINDINCILYD 300
L +++ ++E ++ AY+I +KQ R I + ++L+ E+ T+D N++ IL+
Sbjct: 247 ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLLA-EDETLDENELGEILHA 305
Query: 301 LESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVATLGTS 360
+E ++R ++L RID R + IR + +RTG+LPRTHGS+LFTRG+TQALV ATLGT+
Sbjct: 306 IEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTA 365
Query: 361 RDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRALLPVLPNNN 420
RD Q +D LMGE TD+F+ HYN PP++ G+ G +G PKRREIGHGRLAKR +L V+P+ +
Sbjct: 366 RDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMD 425
Query: 421 KFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAGIAMGLIKDGEKVVILS 480
KF Y++R+VSEITESNGSSSMASVCG LAL+DAGVPI VAGIAMGL+K+G+ V+LS
Sbjct: 426 KFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLS 485
Query: 481 DILGDEDRCGDMDFKVAGTVNGITALQMDIKIFGITYDIIQIALYKAKKGLSYILEKMKT 540
DILGDED GDMDFKVAG+ +GI+ALQMDIKI GIT +I+Q+AL +AK +IL M+
Sbjct: 486 DILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQ 545
Query: 541 EVPKCKNELSKFAPRLITIKIDPSKIRDVIGKGGSTIRTLTEETGTQIDINDEGIITIAS 600
+ + ++S+FAPR+ TIKI+P KI+DVIGKGGS IR LTEETGT I+I D+G + IA+
Sbjct: 546 AINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAA 605
Query: 601 FNSVSGQEAKRRIEKLTESVQIGKVYTGIVLRLFDFGAIIRILSGKDGLLHISQISSKRV 660
+ + A RRIE++T +++G+VYTG V R+ DFGA + I GK+GL+HISQI+ KRV
Sbjct: 606 TDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV 665
Query: 661 NIITDFLKENQKVRVKVLGIDDRGRIKLSM 690
+TD+L+ Q+V VKVL +D +GRI+LS+
Sbjct: 666 EKVTDYLQMGQEVPVKVLEVDRQGRIRLSI 695
|
| >4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Length = 726 | Back alignment and structure |
|---|
| >1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Length = 757 | Back alignment and structure |
|---|
| >3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Length = 630 | Back alignment and structure |
|---|
| >3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A Length = 549 | Back alignment and structure |
|---|
| >3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E Length = 258 | Back alignment and structure |
|---|
| >2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B Length = 250 | Back alignment and structure |
|---|
| >2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A* Length = 249 | Back alignment and structure |
|---|
| >2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 249 | Back alignment and structure |
|---|
| >2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 240 | Back alignment and structure |
|---|
| >2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 240 | Back alignment and structure |
|---|
| >3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group} Length = 246 | Back alignment and structure |
|---|
| >3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group} Length = 246 | Back alignment and structure |
|---|
| >1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A Length = 245 | Back alignment and structure |
|---|
| >1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A Length = 245 | Back alignment and structure |
|---|
| >2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 272 | Back alignment and structure |
|---|
| >2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 272 | Back alignment and structure |
|---|
| >3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis} Length = 255 | Back alignment and structure |
|---|
| >3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis} Length = 255 | Back alignment and structure |
|---|
| >2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 237 | Back alignment and structure |
|---|
| >2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A Length = 255 | Back alignment and structure |
|---|
| >1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A Length = 255 | Back alignment and structure |
|---|
| >1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A Length = 239 | Back alignment and structure |
|---|
| >1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A Length = 239 | Back alignment and structure |
|---|
| >3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis} Length = 262 | Back alignment and structure |
|---|
| >3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans} Length = 222 | Back alignment and structure |
|---|
| >3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans} Length = 222 | Back alignment and structure |
|---|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} Length = 130 | Back alignment and structure |
|---|
| >2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
| >2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} Length = 80 | Back alignment and structure |
|---|
| >2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 271 | Back alignment and structure |
|---|
| >2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 271 | Back alignment and structure |
|---|
| >3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G Length = 259 | Back alignment and structure |
|---|
| >3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G Length = 259 | Back alignment and structure |
|---|
| >2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B* Length = 277 | Back alignment and structure |
|---|
| >2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B* Length = 277 | Back alignment and structure |
|---|
| >3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A Length = 275 | Back alignment and structure |
|---|
| >2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 278 | Back alignment and structure |
|---|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A Length = 175 | Back alignment and structure |
|---|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 Length = 182 | Back alignment and structure |
|---|
| >2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A Length = 277 | Back alignment and structure |
|---|
| >2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A Length = 277 | Back alignment and structure |
|---|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 109 | Back alignment and structure |
|---|
| >2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} Length = 115 | Back alignment and structure |
|---|
| >3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B* Length = 266 | Back alignment and structure |
|---|
| >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 Length = 308 | Back alignment and structure |
|---|
| >2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 358 | Back alignment and structure |
|---|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Length = 1030 | Back alignment and structure |
|---|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Length = 1219 | Back alignment and structure |
|---|
| >2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 305 | Back alignment and structure |
|---|
| >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A Length = 785 | Back alignment and structure |
|---|
| >3h36_A Polyribonucleotide nucleotidyltransferase; polyribonucleotide nucleotidyltransfer structural genomics, PSI-2, protein structure initiative; 1.80A {Streptococcus mutans} Length = 93 | Back alignment and structure |
|---|
| >1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1 Length = 104 | Back alignment and structure |
|---|
| >2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Length = 144 | Back alignment and structure |
|---|
| >2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Length = 144 | Back alignment and structure |
|---|
| >2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 305 | Back alignment and structure |
|---|
| >1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Length = 104 | Back alignment and structure |
|---|
| >2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 94 | Back alignment and structure |
|---|
| >2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 104 | Back alignment and structure |
|---|
| >3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A Length = 179 | Back alignment and structure |
|---|
| >2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 97 | Back alignment and structure |
|---|
| >2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
| >2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164 | Back alignment and structure |
|---|
| >2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164 | Back alignment and structure |
|---|
| >1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Length = 71 | Back alignment and structure |
|---|
| >2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 95 | Back alignment and structure |
|---|
| >2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Length = 85 | Back alignment and structure |
|---|
| >1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1 Length = 187 | Back alignment and structure |
|---|
| >2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1 Length = 235 | Back alignment and structure |
|---|
| >2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 107 | Back alignment and structure |
|---|
| >1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Length = 94 | Back alignment and structure |
|---|
| >3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Length = 163 | Back alignment and structure |
|---|
| >2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Length = 160 | Back alignment and structure |
|---|
| >2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Length = 160 | Back alignment and structure |
|---|
| >1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Length = 92 | Back alignment and structure |
|---|
| >1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Length = 89 | Back alignment and structure |
|---|
| >1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Length = 82 | Back alignment and structure |
|---|
| >1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Length = 87 | Back alignment and structure |
|---|
| >1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Length = 76 | Back alignment and structure |
|---|
| >2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 83 | Back alignment and structure |
|---|
| >2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Length = 73 | Back alignment and structure |
|---|
| >1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Length = 82 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E Length = 180 | Back alignment and structure |
|---|
| >2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Length = 219 | Back alignment and structure |
|---|
| >2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Length = 76 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 692 | ||||
| d2ba0g1 | 176 | d.14.1.4 (G:3-178) Exosome complex exonuclease 2,E | 5e-38 | |
| d2ba0g1 | 176 | d.14.1.4 (G:3-178) Exosome complex exonuclease 2,E | 1e-05 | |
| d2je6a1 | 191 | d.14.1.4 (A:1-191) Exosome complex exonuclease 2,E | 6e-38 | |
| d1e3ha3 | 137 | d.14.1.4 (A:346-482) Polynucleotide phosphorylase/ | 9e-38 | |
| d1e3ha3 | 137 | d.14.1.4 (A:346-482) Polynucleotide phosphorylase/ | 2e-16 | |
| d2je6b1 | 148 | d.14.1.4 (B:8-155) Exosome complex exonuclease 1, | 8e-36 | |
| d2nn6b1 | 145 | d.14.1.4 (B:6-150) Exosome complex exonuclease RRP | 1e-35 | |
| d2ba0d1 | 144 | d.14.1.4 (D:10-153) Exosome complex exonuclease 1, | 8e-35 | |
| d2ba0d1 | 144 | d.14.1.4 (D:10-153) Exosome complex exonuclease 1, | 0.004 | |
| d2nn6a1 | 184 | d.14.1.4 (A:1-184) Exosome complex exonuclease RRP | 2e-34 | |
| d2nn6e1 | 187 | d.14.1.4 (E:5-191) Exosome complex exonuclease RRP | 5e-34 | |
| d1e3ha2 | 149 | d.14.1.4 (A:3-151) Polynucleotide phosphorylase/gu | 6e-33 | |
| d1e3ha2 | 149 | d.14.1.4 (A:3-151) Polynucleotide phosphorylase/gu | 2e-27 | |
| d1r6la1 | 151 | d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseu | 9e-33 | |
| d1r6la1 | 151 | d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseu | 2e-06 | |
| d1e3ha6 | 96 | d.101.1.1 (A:483-578) Polynucleotide phosphorylase | 1e-32 | |
| d1oysa1 | 151 | d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Baci | 4e-32 | |
| d1oysa1 | 151 | d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Baci | 2e-09 | |
| d2nn6f1 | 147 | d.14.1.4 (F:29-175) Exosome complex exonuclease MT | 5e-32 | |
| d2nn6f1 | 147 | d.14.1.4 (F:29-175) Exosome complex exonuclease MT | 1e-19 | |
| d2nn6c1 | 181 | d.14.1.4 (C:7-187) Exosome complex exonuclease RRP | 2e-30 | |
| d2nn6c1 | 181 | d.14.1.4 (C:7-187) Exosome complex exonuclease RRP | 3e-15 | |
| d2nn6d1 | 122 | d.14.1.4 (D:25-146) Exosome complex exonuclease RR | 9e-29 | |
| d2nn6d1 | 122 | d.14.1.4 (D:25-146) Exosome complex exonuclease RR | 3e-19 | |
| d1udsa1 | 149 | d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aqui | 1e-28 | |
| d1udsa1 | 149 | d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aqui | 8e-08 | |
| d1e3ha5 | 111 | d.101.1.1 (A:152-262) Polynucleotide phosphorylase | 1e-24 | |
| d2z0sa2 | 87 | d.51.1.1 (A:148-234) Exosome complex RNA-binding p | 2e-17 | |
| d1sroa_ | 76 | b.40.4.5 (A:) S1 RNA-binding domain of polyribonuc | 4e-17 | |
| d2je6i3 | 69 | d.51.1.1 (I:153-221) Exosome complex RNA-binding p | 5e-16 | |
| d1e3ha4 | 54 | d.52.3.1 (A:579-632) Polynucleotide phosphorylase/ | 5e-16 | |
| d1oysa2 | 86 | d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {B | 8e-16 | |
| d1oysa2 | 86 | d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {B | 4e-05 | |
| d3bzka4 | 94 | b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas ae | 2e-15 | |
| d2nn6h1 | 95 | b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-pro | 5e-15 | |
| d2z0sa1 | 88 | b.40.4.5 (A:60-147) S1-domain of exosome complex R | 9e-15 | |
| d1r6la2 | 88 | d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {P | 4e-14 | |
| d1r6la2 | 88 | d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {P | 2e-08 | |
| d1e3pa2 | 62 | b.40.4.5 (A:656-717) S1 RNA-binding domain of poly | 5e-14 | |
| d1tuaa1 | 84 | d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Ae | 2e-13 | |
| d1udsa2 | 105 | d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {A | 3e-13 | |
| d1udsa2 | 105 | d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {A | 8e-10 | |
| d2ba0a3 | 84 | d.51.1.1 (A:136-219) Exosome complex RNA-binding p | 3e-13 | |
| d2ctka1 | 91 | d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [T | 7e-13 | |
| d2cpqa1 | 78 | d.51.1.1 (A:212-289) Fragile X mental retardation | 2e-12 | |
| d1e3ha1 | 83 | a.4.9.1 (A:263-345) Polynucleotide phosphorylase/g | 3e-12 | |
| d1tuaa2 | 104 | d.51.1.1 (A:85-188) Hypothetical protein APE0754 { | 4e-12 | |
| d2ba0a1 | 83 | b.40.4.5 (A:53-135) S1-domain of exosome complex R | 8e-12 | |
| d2je6i1 | 87 | b.40.4.5 (I:66-152) S1-domain of exosome complex R | 9e-12 | |
| d2ba0d2 | 99 | d.101.1.1 (D:154-252) Exosome complex exonuclease | 1e-11 | |
| d2ba0d2 | 99 | d.101.1.1 (D:154-252) Exosome complex exonuclease | 4e-10 | |
| d2nn6b2 | 90 | d.101.1.1 (B:151-240) Exosome complex exonuclease | 3e-11 | |
| d2nn6b2 | 90 | d.101.1.1 (B:151-240) Exosome complex exonuclease | 1e-05 | |
| d2je6b2 | 86 | d.101.1.1 (B:156-241) Exosome complex exonuclease | 5e-11 | |
| d2je6b2 | 86 | d.101.1.1 (B:156-241) Exosome complex exonuclease | 3e-06 | |
| d1whua_ | 104 | a.4.9.1 (A:) Polynucleotide phosphorylase/guanosin | 8e-11 | |
| d2je6a2 | 84 | d.101.1.1 (A:192-275) Exosome complex exonuclease | 2e-10 | |
| d2je6a2 | 84 | d.101.1.1 (A:192-275) Exosome complex exonuclease | 3e-04 | |
| d1kl9a2 | 86 | b.40.4.5 (A:3-88) Eukaryotic initiation factor 2al | 2e-10 | |
| d2nn6d2 | 89 | d.101.1.1 (D:147-235) Exosome complex exonuclease | 3e-10 | |
| d1we8a_ | 104 | d.51.1.1 (A:) Tudor and KH domain containing prote | 5e-10 | |
| d2ahob2 | 84 | b.40.4.5 (B:1-84) Eukaryotic initiation factor 2al | 2e-09 | |
| d2ctfa1 | 90 | d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [T | 4e-09 | |
| d1viga_ | 71 | d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId | 7e-09 | |
| d2ctea1 | 81 | d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T | 1e-08 | |
| d2ctla1 | 84 | d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [T | 1e-08 | |
| d2nn6g1 | 88 | b.40.4.5 (G:107-194) S1-domain of exosome componen | 3e-08 | |
| d1go3e1 | 106 | b.40.4.5 (E:79-184) C-terminal domain of RNA polym | 3e-08 | |
| d2ctma1 | 81 | d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T | 3e-07 | |
| d2nn6f2 | 95 | d.101.1.1 (F:176-270) Exosome complex exonuclease | 4e-07 | |
| d2ctja1 | 82 | d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [T | 6e-07 | |
| d1j4wa1 | 74 | d.51.1.1 (A:1-74) Far upstream binding element, FB | 1e-06 | |
| d1x4na1 | 79 | d.51.1.1 (A:8-86) Far upstream binding element, FB | 1e-06 | |
| d2axya1 | 71 | d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Hum | 2e-05 | |
| d1y14b1 | 91 | b.40.4.5 (B:81-171) C-terminal domain of RNA polym | 4e-05 | |
| d1x4ma1 | 81 | d.51.1.1 (A:8-88) Far upstream binding element, FB | 7e-05 | |
| d1dtja_ | 74 | d.51.1.1 (A:) Neuro-oncological ventral antigen 2, | 2e-04 | |
| d1zzka1 | 75 | d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapie | 3e-04 | |
| d2ba0g2 | 79 | d.101.1.1 (G:179-257) Exosome complex exonuclease | 4e-04 | |
| d2c35b1 | 94 | b.40.4.5 (B:78-171) C-terminal domain of RNA polym | 4e-04 | |
| d1wvna1 | 70 | d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Huma | 5e-04 | |
| d1j4wa2 | 71 | d.51.1.1 (A:104-174) Far upstream binding element, | 0.001 | |
| d2ix0a3 | 87 | b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Esche | 0.002 |
| >d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Ribonuclease PH domain 1-like domain: Exosome complex exonuclease 2,ECX2 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 137 bits (345), Expect = 5e-38
Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 3/170 (1%)
Query: 297 ILYDLESKIIRKQILDKGLRIDNRGVNDIRPISIRTGILPRTHGSSLFTRGDTQALVVAT 356
IL D++ + L RID RG ++ R + I ++ + GS+L GDTQ +V
Sbjct: 3 ILVDIKRDYVLS-KLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVK 61
Query: 357 LGTSRDEQKIDALMGEFTDSFMLHYNMPPFATGDIGRIGVPKRREIGHGRLAKRA--LLP 414
+ ++ ++ P F G + R + G A L
Sbjct: 62 MQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSK 121
Query: 415 VLPNNNKFNYSIRLVSEITESNGSSSMASVCGGCLALLDAGVPISEHVAG 464
++ + + + + + +G+ AS AL++ VP G
Sbjct: 122 LVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLG 171
|
| >d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 176 | Back information, alignment and structure |
|---|
| >d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Length = 191 | Back information, alignment and structure |
|---|
| >d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Length = 137 | Back information, alignment and structure |
|---|
| >d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Length = 137 | Back information, alignment and structure |
|---|
| >d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 148 | Back information, alignment and structure |
|---|
| >d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Length = 145 | Back information, alignment and structure |
|---|
| >d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 144 | Back information, alignment and structure |
|---|
| >d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 144 | Back information, alignment and structure |
|---|
| >d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Length = 184 | Back information, alignment and structure |
|---|
| >d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Length = 187 | Back information, alignment and structure |
|---|
| >d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Length = 149 | Back information, alignment and structure |
|---|
| >d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Length = 149 | Back information, alignment and structure |
|---|
| >d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 151 | Back information, alignment and structure |
|---|
| >d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 151 | Back information, alignment and structure |
|---|
| >d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} Length = 96 | Back information, alignment and structure |
|---|
| >d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus subtilis [TaxId: 1423]} Length = 151 | Back information, alignment and structure |
|---|
| >d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus subtilis [TaxId: 1423]} Length = 151 | Back information, alignment and structure |
|---|
| >d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 147 | Back information, alignment and structure |
|---|
| >d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 147 | Back information, alignment and structure |
|---|
| >d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Length = 181 | Back information, alignment and structure |
|---|
| >d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Length = 181 | Back information, alignment and structure |
|---|
| >d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
| >d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
| >d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]} Length = 149 | Back information, alignment and structure |
|---|
| >d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]} Length = 149 | Back information, alignment and structure |
|---|
| >d1e3ha5 d.101.1.1 (A:152-262) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} Length = 111 | Back information, alignment and structure |
|---|
| >d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 87 | Back information, alignment and structure |
|---|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
| >d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 69 | Back information, alignment and structure |
|---|
| >d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Length = 54 | Back information, alignment and structure |
|---|
| >d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus subtilis [TaxId: 1423]} Length = 86 | Back information, alignment and structure |
|---|
| >d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus subtilis [TaxId: 1423]} Length = 86 | Back information, alignment and structure |
|---|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 94 | Back information, alignment and structure |
|---|
| >d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 88 | Back information, alignment and structure |
|---|
| >d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {Pseudomonas aeruginosa [TaxId: 287]} Length = 88 | Back information, alignment and structure |
|---|
| >d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {Pseudomonas aeruginosa [TaxId: 287]} Length = 88 | Back information, alignment and structure |
|---|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} Length = 62 | Back information, alignment and structure |
|---|
| >d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Length = 84 | Back information, alignment and structure |
|---|
| >d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId: 63363]} Length = 105 | Back information, alignment and structure |
|---|
| >d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId: 63363]} Length = 105 | Back information, alignment and structure |
|---|
| >d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 84 | Back information, alignment and structure |
|---|
| >d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
| >d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 78 | Back information, alignment and structure |
|---|
| >d1e3ha1 a.4.9.1 (A:263-345) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 {Streptomyces antibioticus [TaxId: 1890]} Length = 83 | Back information, alignment and structure |
|---|
| >d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Length = 104 | Back information, alignment and structure |
|---|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 83 | Back information, alignment and structure |
|---|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 87 | Back information, alignment and structure |
|---|
| >d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 99 | Back information, alignment and structure |
|---|
| >d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 99 | Back information, alignment and structure |
|---|
| >d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
| >d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
| >d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 86 | Back information, alignment and structure |
|---|
| >d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 86 | Back information, alignment and structure |
|---|
| >d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 | Back information, alignment and structure |
|---|
| >d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
| >d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 | Back information, alignment and structure |
|---|
| >d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
| >d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 | Back information, alignment and structure |
|---|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 | Back information, alignment and structure |
|---|
| >d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
| >d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 71 | Back information, alignment and structure |
|---|
| >d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 | Back information, alignment and structure |
|---|
| >d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 84 | Back information, alignment and structure |
|---|
| >d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 106 | Back information, alignment and structure |
|---|
| >d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 | Back information, alignment and structure |
|---|
| >d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
| >d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 82 | Back information, alignment and structure |
|---|
| >d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 74 | Back information, alignment and structure |
|---|
| >d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 | Back information, alignment and structure |
|---|
| >d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 | Back information, alignment and structure |
|---|
| >d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 91 | Back information, alignment and structure |
|---|
| >d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 81 | Back information, alignment and structure |
|---|
| >d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74 | Back information, alignment and structure |
|---|
| >d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 75 | Back information, alignment and structure |
|---|
| >d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 79 | Back information, alignment and structure |
|---|
| >d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
| >d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 71 | Back information, alignment and structure |
|---|
| >d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Length = 87 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 692 | |||
| d1e3ha2 | 149 | Polynucleotide phosphorylase/guanosine pentaphosph | 100.0 | |
| d2nn6b1 | 145 | Exosome complex exonuclease RRP41 {Human (Homo sap | 99.97 | |
| d2je6b1 | 148 | Exosome complex exonuclease 1, ECX1 {Sulfolobus so | 99.97 | |
| d2ba0d1 | 144 | Exosome complex exonuclease 1, ECX1 {Archaeoglobus | 99.97 | |
| d2ba0g1 | 176 | Exosome complex exonuclease 2,ECX2 {Archaeoglobus | 99.95 | |
| d1e3ha3 | 137 | Polynucleotide phosphorylase/guanosine pentaphosph | 99.95 | |
| d1udsa1 | 149 | Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId | 99.95 | |
| d1r6la1 | 151 | Ribonuclease PH, domain 1 {Pseudomonas aeruginosa | 99.94 | |
| d1oysa1 | 151 | Ribonuclease PH, domain 1 {Bacillus subtilis [TaxI | 99.94 | |
| d2je6a1 | 191 | Exosome complex exonuclease 2,ECX2 {Sulfolobus sol | 99.94 | |
| d2nn6e1 | 187 | Exosome complex exonuclease RRP42 {Human (Homo sap | 99.93 | |
| d2nn6c1 | 181 | Exosome complex exonuclease RRP43 {Human (Homo sap | 99.92 | |
| d2nn6a1 | 184 | Exosome complex exonuclease RRP45 {Human (Homo sap | 99.91 | |
| d2nn6f1 | 147 | Exosome complex exonuclease MTR3 {Human (Homo sapi | 99.9 | |
| d2nn6d1 | 122 | Exosome complex exonuclease RRP46 {Human (Homo sap | 99.9 | |
| d1e3ha2 | 149 | Polynucleotide phosphorylase/guanosine pentaphosph | 99.89 | |
| d1e3ha3 | 137 | Polynucleotide phosphorylase/guanosine pentaphosph | 99.89 | |
| d1e3ha6 | 96 | Polynucleotide phosphorylase/guanosine pentaphosph | 99.85 | |
| d1e3ha5 | 111 | Polynucleotide phosphorylase/guanosine pentaphosph | 99.83 | |
| d2nn6d1 | 122 | Exosome complex exonuclease RRP46 {Human (Homo sap | 99.82 | |
| d2je6b1 | 148 | Exosome complex exonuclease 1, ECX1 {Sulfolobus so | 99.8 | |
| d2ba0d1 | 144 | Exosome complex exonuclease 1, ECX1 {Archaeoglobus | 99.8 | |
| d2nn6b1 | 145 | Exosome complex exonuclease RRP41 {Human (Homo sap | 99.79 | |
| d1r6la2 | 88 | Ribonuclease PH, domain 2 {Pseudomonas aeruginosa | 99.79 | |
| d1udsa1 | 149 | Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId | 99.79 | |
| d1sroa_ | 76 | S1 RNA-binding domain of polyribonucleotide phosph | 99.77 | |
| d1r6la1 | 151 | Ribonuclease PH, domain 1 {Pseudomonas aeruginosa | 99.74 | |
| d2nn6f1 | 147 | Exosome complex exonuclease MTR3 {Human (Homo sapi | 99.72 | |
| d1kl9a2 | 86 | Eukaryotic initiation factor 2alpha, eIF2alpha, N- | 99.69 | |
| d1oysa1 | 151 | Ribonuclease PH, domain 1 {Bacillus subtilis [TaxI | 99.69 | |
| d2ahob2 | 84 | Eukaryotic initiation factor 2alpha, eIF2alpha, N- | 99.67 | |
| d1udsa2 | 105 | Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId | 99.67 | |
| d2ba0a1 | 83 | S1-domain of exosome complex RNA-binding protein 1 | 99.64 | |
| d1oysa2 | 86 | Ribonuclease PH, domain 2 {Bacillus subtilis [TaxI | 99.64 | |
| d3bzka4 | 94 | Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287] | 99.62 | |
| d2je6a1 | 191 | Exosome complex exonuclease 2,ECX2 {Sulfolobus sol | 99.62 | |
| d2je6b2 | 86 | Exosome complex exonuclease 1, ECX1 {Sulfolobus so | 99.62 | |
| d2ba0g1 | 176 | Exosome complex exonuclease 2,ECX2 {Archaeoglobus | 99.61 | |
| d2nn6c1 | 181 | Exosome complex exonuclease RRP43 {Human (Homo sap | 99.59 | |
| d2je6i1 | 87 | S1-domain of exosome complex RNA-binding protein 1 | 99.58 | |
| d2nn6b2 | 90 | Exosome complex exonuclease RRP41 {Human (Homo sap | 99.57 | |
| d2nn6e1 | 187 | Exosome complex exonuclease RRP42 {Human (Homo sap | 99.57 | |
| d2z0sa1 | 88 | S1-domain of exosome complex RNA-binding protein 1 | 99.56 | |
| d1go3e1 | 106 | C-terminal domain of RNA polymerase II subunit RBP | 99.54 | |
| d2ba0d2 | 99 | Exosome complex exonuclease 1, ECX1 {Archaeoglobus | 99.52 | |
| d2je6a2 | 84 | Exosome complex exonuclease 2, ECX2 {Sulfolobus so | 99.5 | |
| d1e3pa2 | 62 | S1 RNA-binding domain of polyribonucleotide phosph | 99.46 | |
| d2nn6d2 | 89 | Exosome complex exonuclease RRP46 {Human (Homo sap | 99.46 | |
| d2nn6a1 | 184 | Exosome complex exonuclease RRP45 {Human (Homo sap | 99.44 | |
| d1e3ha1 | 83 | Polynucleotide phosphorylase/guanosine pentaphosph | 99.43 | |
| d2nn6h1 | 95 | S1-domain of Ribosomal RNA-processing protein 4, R | 99.42 | |
| d1wi5a_ | 119 | S1-domain of RRP5 protein homolog (PDCD11, KIAA018 | 99.41 | |
| d1whua_ | 104 | Polynucleotide phosphorylase/guanosine pentaphosph | 99.41 | |
| d1r6la2 | 88 | Ribonuclease PH, domain 2 {Pseudomonas aeruginosa | 99.41 | |
| d1oysa2 | 86 | Ribonuclease PH, domain 2 {Bacillus subtilis [TaxI | 99.3 | |
| d1e3ha4 | 54 | Polynucleotide phosphorylase/guanosine pentaphosph | 99.25 | |
| d2ix0a3 | 87 | Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 | 99.25 | |
| d2je6a2 | 84 | Exosome complex exonuclease 2, ECX2 {Sulfolobus so | 99.22 | |
| d2je6b2 | 86 | Exosome complex exonuclease 1, ECX1 {Sulfolobus so | 99.2 | |
| d2nn6b2 | 90 | Exosome complex exonuclease RRP41 {Human (Homo sap | 99.19 | |
| d1udsa2 | 105 | Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId | 99.18 | |
| d2nn6d2 | 89 | Exosome complex exonuclease RRP46 {Human (Homo sap | 99.12 | |
| d1y14b1 | 91 | C-terminal domain of RNA polymerase II subunit RBP | 99.09 | |
| d2nn6g1 | 88 | S1-domain of exosome component 3 (RRP40) {Human (H | 99.08 | |
| d2nn6c2 | 89 | Exosome complex exonuclease RRP43 {Human (Homo sap | 99.08 | |
| d2nn6a2 | 118 | Exosome complex exonuclease RRP45 {Human (Homo sap | 99.07 | |
| d2ba0g2 | 79 | Exosome complex exonuclease 2, ECX2 {Archaeoglobus | 99.05 | |
| d2ba0g2 | 79 | Exosome complex exonuclease 2, ECX2 {Archaeoglobus | 99.04 | |
| d2z0sa2 | 87 | Exosome complex RNA-binding protein 1, ECR1 {Aerop | 99.03 | |
| d2c35b1 | 94 | C-terminal domain of RNA polymerase II subunit RBP | 99.01 | |
| d2ba0d2 | 99 | Exosome complex exonuclease 1, ECX1 {Archaeoglobus | 99.01 | |
| d2nn6e2 | 94 | Exosome complex exonuclease RRP42 {Human (Homo sap | 99.01 | |
| d2nn6f2 | 95 | Exosome complex exonuclease MTR3 {Human (Homo sapi | 98.99 | |
| d2nn6e2 | 94 | Exosome complex exonuclease RRP42 {Human (Homo sap | 98.98 | |
| d2ja9a1 | 90 | S1-domain of exosome component 3 (RRP40) {Saccharo | 98.91 | |
| d2nn6c2 | 89 | Exosome complex exonuclease RRP43 {Human (Homo sap | 98.91 | |
| d2nn6a2 | 118 | Exosome complex exonuclease RRP45 {Human (Homo sap | 98.9 | |
| d2nn6f2 | 95 | Exosome complex exonuclease MTR3 {Human (Homo sapi | 98.82 | |
| d2je6i3 | 69 | Exosome complex RNA-binding protein 1, ECR1 {Sulfo | 98.74 | |
| d1tuaa1 | 84 | Hypothetical protein APE0754 {Aeropyrum pernix [Ta | 98.72 | |
| d2cpqa1 | 78 | Fragile X mental retardation syndrome related prot | 98.69 | |
| d2ba0a3 | 84 | Exosome complex RNA-binding protein 1, ECR1 {Archa | 98.58 | |
| d2nn6i1 | 125 | Exosome component 1, EXOSC1 {Human (Homo sapiens) | 98.37 | |
| d1hh2p1 | 72 | S1 domain of NusA {Thermotoga maritima [TaxId: 233 | 98.07 | |
| d1tuaa2 | 104 | Hypothetical protein APE0754 {Aeropyrum pernix [Ta | 98.06 | |
| d2ctka1 | 91 | Vigilin {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d1we8a_ | 104 | Tudor and KH domain containing protein, Tdrkh {Mou | 97.72 | |
| d1smxa_ | 87 | S1-domain of Ribonuclease E {Escherichia coli [Tax | 97.63 | |
| d1e3ha6 | 96 | Polynucleotide phosphorylase/guanosine pentaphosph | 97.6 | |
| d1e3ha5 | 111 | Polynucleotide phosphorylase/guanosine pentaphosph | 97.56 | |
| d2asba1 | 76 | S1 domain of NusA {Mycobacterium tuberculosis [Tax | 97.55 | |
| d2ctfa1 | 90 | Vigilin {Human (Homo sapiens) [TaxId: 9606]} | 97.49 | |
| d1zzka1 | 75 | HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d2ctma1 | 81 | Vigilin {Human (Homo sapiens) [TaxId: 9606]} | 97.37 | |
| d2axya1 | 71 | Poly(RC)-binding protein 2 {Human (Homo sapiens) [ | 97.36 | |
| d1viga_ | 71 | Vigilin {Human (Homo sapiens) [TaxId: 9606]} | 97.32 | |
| d1j4wa1 | 74 | Far upstream binding element, FBP {Human (Homo sap | 97.29 | |
| d1x4ma1 | 81 | Far upstream binding element, FBP {Mouse (Mus musc | 97.29 | |
| d1dtja_ | 74 | Neuro-oncological ventral antigen 2, nova-2, KH3 { | 97.23 | |
| d1j4wa2 | 71 | Far upstream binding element, FBP {Human (Homo sap | 97.21 | |
| d2ctla1 | 84 | Vigilin {Human (Homo sapiens) [TaxId: 9606]} | 97.15 | |
| d2ctea1 | 81 | Vigilin {Human (Homo sapiens) [TaxId: 9606]} | 97.14 | |
| d1wvna1 | 70 | Poly(RC)-binding protein 1 {Human (Homo sapiens) [ | 96.92 | |
| d1x4na1 | 79 | Far upstream binding element, FBP {Mouse (Mus musc | 96.88 | |
| d2ctja1 | 82 | Vigilin {Human (Homo sapiens) [TaxId: 9606]} | 96.76 | |
| d1k1ga_ | 122 | RNA splicing factor 1 {Human (Homo sapiens) [TaxId | 94.9 | |
| d1luza_ | 85 | Viral structural mimic of eIF2alpha {Vaccinia viru | 93.4 | |
| d2bl5a1 | 134 | Quaking protein A (Xqua) {African clawed frog (Xen | 92.44 | |
| d1kl9a2 | 86 | Eukaryotic initiation factor 2alpha, eIF2alpha, N- | 91.11 | |
| d1sroa_ | 76 | S1 RNA-binding domain of polyribonucleotide phosph | 91.03 | |
| d1ah9a_ | 71 | Translational initiation factor 1, IF1 {Escherichi | 89.3 | |
| d1h95a_ | 79 | Y-box protein 1 cold shock domain (YB1-CSD) {Human | 88.58 | |
| d1e3pa2 | 62 | S1 RNA-binding domain of polyribonucleotide phosph | 88.55 | |
| d1wfqa_ | 89 | Cold shock domain protein E1 (UNR) {Human (Homo sa | 88.36 | |
| d1mjca_ | 69 | Major cold shock protein {Escherichia coli [TaxId: | 87.94 | |
| d1c9oa_ | 66 | Major cold shock protein {Bacillus caldolyticus [T | 87.44 | |
| d1jjga_ | 102 | Viral structural mimic of eIF2alpha {Myxoma virus, | 86.7 | |
| d2ja9a2 | 85 | Ribosomal RNA-processing protein 40, RRP40 {Saccha | 86.4 | |
| d2ahob2 | 84 | Eukaryotic initiation factor 2alpha, eIF2alpha, N- | 85.9 | |
| d2ba0a1 | 83 | S1-domain of exosome complex RNA-binding protein 1 | 83.84 | |
| d2nn6h1 | 95 | S1-domain of Ribosomal RNA-processing protein 4, R | 81.93 |
| >d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Ribonuclease PH domain 1-like domain: Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 species: Streptomyces antibioticus [TaxId: 1890]
Probab=100.00 E-value=8.9e-39 Score=301.58 Aligned_cols=134 Identities=43% Similarity=0.789 Sum_probs=128.7
Q ss_pred ECCeEEEEEeCccCcCCCcEEEEEeCCeEEEEEEEecC-CCCCCCCccceeeeeEeeccccCCCCCccccccCCCCchhh
Q psy3755 11 YGSYKISIEIGEIARQATSSVLVSIEDTVILATVVSCK-DPTSTYNFFPLTVDYIEKAYAAGRIPGSFFKREGKPSERET 89 (692)
Q Consensus 11 ~~~r~i~~e~G~~a~~A~GSa~v~~G~T~Vl~tv~~~~-~~~~~~~f~pl~v~y~e~~~a~g~ip~~~~~reg~p~~~e~ 89 (692)
||+|+|++|+|++|+||||||++++|+|+|||+|+.+. +++...+|+|++++|+|++|++|++|++|.||||+|+++|+
T Consensus 15 ~~~R~i~ie~G~lakqA~GSalv~~G~T~vl~ta~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~rre~~~~~rei 94 (149)
T d1e3ha2 15 FGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAI 94 (149)
T ss_dssp GCEEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEECSSCCTTCSSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHHHH
T ss_pred CCCcEEEEEeCcccccCCceEEEEECCcEEEEEeeecccccccccccCCceeEEEEeccccccccccccccccccchHHH
Confidence 57899999999999999999999999999999998754 45667799999999999999999999999999999999999
Q ss_pred HHHHHhcCccccCccCCCcCeeEEEEEEEecCCCCChhhHHHHHHHHHhhCCCCC
Q psy3755 90 IISRLIDRPIRPLFPEGYLNEIQIVVYVLSVNPQIDPDIASIIGVSTALSISELP 144 (692)
Q Consensus 90 l~sRlidr~lrplfp~~~~~~~~i~~~vl~~d~~~~~~~~ai~aAs~AL~~s~IP 144 (692)
|++|||||+|||+||++|++++||+++|+++|++++++++||||||+||++||||
T Consensus 95 l~~rlidR~Lrpl~p~~~~~~~qI~~~vl~~d~d~~~~~aai~aAs~AL~~agIP 149 (149)
T d1e3ha2 95 LTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVVAINAASASTQLAGLP 149 (149)
T ss_dssp HHHHHHHHHHHHHBCTTBCSCEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhhccccCCCceEEEEEEEEeCCCCChHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999
|
| >d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
|---|
| >d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
|---|
| >d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
|---|
| >d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
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| >d1e3ha5 d.101.1.1 (A:152-262) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
|---|
| >d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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| >d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
|---|
| >d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1e3ha1 a.4.9.1 (A:263-345) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
|---|
| >d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
|---|
| >d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40) {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
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| >d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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| >d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
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| >d1e3ha5 d.101.1.1 (A:152-262) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
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| >d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1luza_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Vaccinia virus [TaxId: 10245]} | Back information, alignment and structure |
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| >d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
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| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
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| >d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus caldolyticus [TaxId: 1394]} | Back information, alignment and structure |
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| >d1jjga_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Myxoma virus, m156r [TaxId: 10273]} | Back information, alignment and structure |
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| >d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
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| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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