Psyllid ID: psy3759

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840----
Protein Sequence
MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL
Secondary Structure (PSIPRED)
ccccHHHHHHccccccccccccccccccccccccccEEEEEcHHcHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccHHHHHHHHccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHcccEEEEEEEEEEcccccEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHcccccHHHHHHHcccccEEEEEcccccccccccHHHHHHHHHcccEEEEEcccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHcccccEEEEEccccccHHHHcccccccEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccEEcccEEEccccHHHHHHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHHHHHHcccccccHHHHccccHHHHHHHHHccccccccHHHHHHcHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHccccccccccccccccccEEEEccccEEEEEHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHccccEEEccHHccHcccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHcccccccEEEEEccHHHHHHHHHHHHccccEEEEEEcccccccccEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccEEEEEEEEEccHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHccHHcccccccHHHHHHHHHHcccEEEEEEEEEcccccHHEEEEcccEEEEEEEEcccHHHHHHHHHHHHHHcccEccHHHccHHHHHHHHHHHHHHHHHcccHHcccccccccHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHcHHHEEEccccccEEccccccccccEEHccccHHHHHHccccEcccHHHHHHccccccEEEEEccccccEEEEEEcccccEEEcccEEEcHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccEEEEccEEEEHHHcEEEEEEEccEEEEEEcccccHHHHHHHHHHcccccccEEEccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSITIREMLEAgvhfghqtrfwnpkmssyifghrnkIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIaneavragmpfidqrwlgglltnfKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIggiknmniipdaIFIIDVGYHKGAVSEAIKLNipiigvvdtnhspdginyvipgnddsaKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNisnrnakdGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITentpinldqlnnlkiknnlLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEyngdnesaVKDVAMHIAAMKpialssdqipkkIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESyiplnaikyleEGKVVIFaggignpffttDTTAALRAAEIKAEIILKATkvdgiynsdpnkcLSAIIYKKITFDEVISKKLEIMDSTafsfcrdqklpirVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRtgranigmldNIQVKYHEHLTKLLKIANItlfnshtisiqpFEKEMSSIIKKAINeanlglnptiqgniiyvsippltkERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL
Flexible Loop (DISEMBL)
MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAneavragmpfidQRWLGGLLTNFKTIKTSIQRLKEMdlfitngsirklskKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIeangklskaEEILRIKlgkkilnisnrnakdgVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITentpinldqlnnlKIKNNLLTVDEKCKELISRigenikirrfKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPialssdqipKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILkatkvdgiynsdpnKCLSAIIYKKITFDEVISKKLEIMDSTAfsfcrdqklpiRVFSIiksgalkrviegknegtlVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLikniteetkisirkirrdsnenlKKLLknkilsvdneYRAQYDIQKLTDKFILEINQllinkekeiltl
Low Complexity Region (SEG)
MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPinldqlnnlkiknnllTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYninssiikniiseiseivscgieLAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDttaalraaeikaeiilkatkVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNEnlkkllknkilSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL
Disordered region (IsUnstruct)
****IREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK*******
Disordered Region (DISOPRED)
*SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD************************************************************************CETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAM*************************LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISI**********L*KLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL
Disordered Region (DISEMBL)
MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL
Disordered Region (DISPRO)
MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRS*TLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	844	2.2.26 [Sep-21-2011]
A4G4S1	248	30S ribosomal protein S2	yes	N/A	0.266	0.907	0.697	3e-99
A6SZQ1	248	30S ribosomal protein S2	yes	N/A	0.266	0.907	0.702	3e-99
B2UB06	247	30S ribosomal protein S2	yes	N/A	0.265	0.906	0.683	3e-91
Q0KA16	248	30S ribosomal protein S2	yes	N/A	0.265	0.903	0.660	3e-90
Q8XZJ1	247	30S ribosomal protein S2	yes	N/A	0.265	0.906	0.674	1e-89
B3R2B7	247	30S ribosomal protein S2	yes	N/A	0.265	0.906	0.665	1e-89
Q470D7	247	30S ribosomal protein S2	yes	N/A	0.265	0.906	0.665	2e-89
Q1LNF8	247	30S ribosomal protein S2	yes	N/A	0.265	0.906	0.665	6e-89
A1TN69	250	30S ribosomal protein S2	yes	N/A	0.265	0.896	0.657	2e-88
A1WHU2	250	30S ribosomal protein S2	yes	N/A	0.265	0.896	0.653	2e-88

>sp|A4G4S1|RS2_HERAR 30S ribosomal protein S2 OS=Herminiimonas arsenicoxydans GN=rpsB PE=3 SV=1

 Score =  363 bits (932), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 157/225 (69%), Positives = 198/225 (88%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ YIFGHRN+IHI+NLEKTL MY++A++YI QL 
Sbjct: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPYIFGHRNRIHIVNLEKTLGMYQEAMKYIKQLS 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+LFVGTKRQAR  IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKE++  +
Sbjct: 61  SNRGTVLFVGTKRQARETIAAEAARAGMPYVDQRWLGGMLTNFKTIKTSIKRLKELEALV 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +GS+ KLSKKEAL+F R+++KL + IGGIK+M  IPDAIF++DVGYHKGA++EA KL I
Sbjct: 121 EDGSMEKLSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225
           P+IGVVDTNHSP+G+ Y+IPGNDDS+K+I LY +G+ DA L+ + 
Sbjct: 181 PVIGVVDTNHSPEGVAYIIPGNDDSSKAIMLYARGVADAILEGRA 225

Herminiimonas arsenicoxydans (taxid: 204773)

>sp|A6SZQ1|RS2_JANMA 30S ribosomal protein S2 OS=Janthinobacterium sp. (strain Marseille) GN=rpsB PE=3 SV=2

 Score =  363 bits (932), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 158/225 (70%), Positives = 199/225 (88%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ +IFGHRN+IHI+NLEKT+ MY++A++YI QL 
Sbjct: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNRIHIVNLEKTMGMYQEAMKYIRQLS 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+LFVGTKRQAR  IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKEM+  I
Sbjct: 61  SNRGTVLFVGTKRQARETIAAEAQRAGMPYVDQRWLGGMLTNFKTIKTSIKRLKEMEASI 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +GS++KLSKKEAL+F R+++KL + IGGIK+M  IPDAIF++DVGYHKGA++EA KL I
Sbjct: 121 EDGSVQKLSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225
           P+IGVVDTNHSP+G+ YVIPGNDDS+K+I LY +G+ DA L+ + 
Sbjct: 181 PVIGVVDTNHSPEGVTYVIPGNDDSSKAIMLYARGVADAILEGRA 225

Janthinobacterium sp. (strain Marseille) (taxid: 375286)

>sp|B2UB06|RS2_RALPJ 30S ribosomal protein S2 OS=Ralstonia pickettii (strain 12J) GN=rpsB PE=3 SV=1

 Score =  337 bits (864), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 153/224 (68%), Positives = 193/224 (86%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL MY+ A++Y+ QL 
Sbjct: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMYQDALKYVRQLA 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+LFVGTKRQ+R ++A EA RAGMPF+D RWLGG+LTNFKT+KTSI+RLK+M++  
Sbjct: 61  ANRGTILFVGTKRQSREILAEEAARAGMPFVDSRWLGGMLTNFKTVKTSIKRLKDMEVAK 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
             G+   +SKKEAL+F R+  KL + IGGIK+M  IPDAIF++DVGYHK AV+EA KL I
Sbjct: 121 EAGATETMSKKEALMFEREMDKLVKSIGGIKDMGGIPDAIFVVDVGYHKIAVTEAAKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           P+IGVVDTNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 181 PVIGVVDTNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224

Ralstonia pickettii (strain 12J) (taxid: 402626)

>sp|Q0KA16|RS2_CUPNH 30S ribosomal protein S2 OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsB PE=3 SV=1

 Score =  333 bits (855), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 148/224 (66%), Positives = 193/224 (86%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAG HFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL M++ A++Y+ QL 
Sbjct: 1   MSVTMREMLEAGCHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMFQDAMKYVRQLA 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+LFVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+KTSI+RLK+M+   
Sbjct: 61  ANRGTILFVGTKRQSREILAEEAGRAGMPYVDARWLGGMLTNFKTVKTSIKRLKDMEAAK 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
             G++  +SKKEAL+F R+ +KL + IGGIK+M  +PDAIF++DVGYHK AV+EA KL +
Sbjct: 121 EAGALETMSKKEALMFEREMLKLEKSIGGIKDMGGVPDAIFVVDVGYHKIAVTEANKLGV 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           P+IGVVDTNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 181 PVIGVVDTNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

>sp|Q8XZJ1|RS2_RALSO 30S ribosomal protein S2 OS=Ralstonia solanacearum (strain GMI1000) GN=rpsB PE=3 SV=1

 Score =  332 bits (850), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 151/224 (67%), Positives = 191/224 (85%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL MY  A++Y+ QL 
Sbjct: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMYLDALKYVRQLA 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+LFVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+K SI+RLK+M+   
Sbjct: 61  ANRGTILFVGTKRQSREILAEEAARAGMPYVDSRWLGGMLTNFKTVKISIKRLKDMEAAK 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
             G++  +SKKEAL+F R+  KL + IGGIK+M  IPDAIF++DVGYHK AV+EA KL I
Sbjct: 121 EAGALESMSKKEALMFEREMEKLEKSIGGIKDMGGIPDAIFVVDVGYHKIAVTEAAKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           P+IGVVDTNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 181 PVIGVVDTNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|B3R2B7|RS2_CUPTR 30S ribosomal protein S2 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsB PE=3 SV=1

 Score =  331 bits (849), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 149/224 (66%), Positives = 192/224 (85%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAG HFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL M++ A++Y+ QL 
Sbjct: 1   MSVTMREMLEAGCHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMFQDAMKYVRQLA 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+LFVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+KTSI+RLK+M+   
Sbjct: 61  ANRGTILFVGTKRQSREILAEEAGRAGMPYVDARWLGGMLTNFKTVKTSIKRLKDMEAAK 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
             G++  +SKKEAL+F R+ +KL + IGGIK M  +PDAIF++DVGYHK AV+EA KL I
Sbjct: 121 EAGALETMSKKEALMFEREMIKLEKSIGGIKEMGGVPDAIFVVDVGYHKIAVTEANKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           P+IGVVDTNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 181 PVIGVVDTNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224

Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546)

>sp|Q470D7|RS2_CUPPJ 30S ribosomal protein S2 OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=rpsB PE=3 SV=1

 Score =  331 bits (848), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 149/224 (66%), Positives = 192/224 (85%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAG HFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL M++ A++Y+ QL 
Sbjct: 1   MSVTMREMLEAGCHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMFQDALKYVRQLA 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT++FVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+KTSI+RLK+M+   
Sbjct: 61  ANRGTIMFVGTKRQSREILAEEAGRAGMPYVDARWLGGMLTNFKTVKTSIKRLKDMEAAK 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
             G++  +SKKEAL+F R+ +KL + IGGIK M  IPDAIF++DVGYHK AV+EA KL I
Sbjct: 121 EAGALDTMSKKEALMFEREMIKLEKSIGGIKEMGGIPDAIFVVDVGYHKIAVTEANKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           P+IGVVDTNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 181 PVIGVVDTNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224

Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)

>sp|Q1LNF8|RS2_RALME 30S ribosomal protein S2 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rpsB PE=3 SV=1

 Score =  329 bits (843), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 149/224 (66%), Positives = 191/224 (85%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAG HFGHQTRFWNPKM+ +IFGHRNKIHIINLEKTL M++ A++Y+ QL 
Sbjct: 1   MSVTMREMLEAGCHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKTLPMFQDALKYVRQLA 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+LFVGTKRQ+R ++A EA RAGMP++D RWLGG+LTNFKT+K SI+RLK+M+   
Sbjct: 61  ANRGTVLFVGTKRQSREILAEEAGRAGMPYVDARWLGGMLTNFKTVKISIKRLKDMEAAK 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
             G++  +SKKEAL+F R+  KL + IGGIK+M  IPDAIF++DVGYHK AV+EA KL I
Sbjct: 121 EAGALETMSKKEALMFEREMEKLEKSIGGIKDMGGIPDAIFVVDVGYHKIAVTEANKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           P+IGVVDTNHSP+GI+YVIPGNDDS+K++ALY +G+ DA L+ +
Sbjct: 181 PVIGVVDTNHSPEGIDYVIPGNDDSSKAVALYVRGVADAILEGR 224

Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264)

>sp|A1TN69|RS2_ACIAC 30S ribosomal protein S2 OS=Acidovorax citrulli (strain AAC00-1) GN=rpsB PE=3 SV=1

 Score =  327 bits (839), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 148/225 (65%), Positives = 189/225 (84%), Gaps = 1/225 (0%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHIINLEK+L M+++A ++  QL 
Sbjct: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIINLEKSLPMFQEAQKFAKQLT 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+L VGTKRQAR ++A EA RAG+P++DQRWLGG+LTNFKT+KTSI+RLK+M    
Sbjct: 61  ANRGTILMVGTKRQARELLAAEAQRAGVPYVDQRWLGGMLTNFKTVKTSIKRLKDMKAQQ 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
             G +  +SKKE L F R+  KL + IGGI++MN +PDAIFIIDVG+HK AV+EA KL I
Sbjct: 121 EAG-LESMSKKEQLTFTREIEKLEKDIGGIQDMNALPDAIFIIDVGFHKIAVAEAKKLGI 179

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225
           P+IGVVD+NHSP+GI+YVIPGNDDSAK++ALY +GI DA ++ + 
Sbjct: 180 PLIGVVDSNHSPEGIDYVIPGNDDSAKAVALYARGIADAIIEGRA 224

Acidovorax citrulli (strain AAC00-1) (taxid: 397945)

>sp|A1WHU2|RS2_VEREI 30S ribosomal protein S2 OS=Verminephrobacter eiseniae (strain EF01-2) GN=rpsB PE=3 SV=1

 Score =  327 bits (838), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 147/225 (65%), Positives = 190/225 (84%), Gaps = 1/225 (0%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+++REMLEAGVHFGHQTRFWNPKM+ YIFGHRNKIHIINLEK+L ++++A +++ QL 
Sbjct: 1   MSVSMREMLEAGVHFGHQTRFWNPKMAPYIFGHRNKIHIINLEKSLPLFQQAQKFVRQLA 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+L VGTKRQAR ++A EA+RAGMPF+DQRWLGG+LTNFKT+KTSI+RLK+M    
Sbjct: 61  ANRGTILMVGTKRQAREILATEALRAGMPFVDQRWLGGMLTNFKTVKTSIKRLKDMKAQQ 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
             G +  LSKKE L F R+  KL + IGGI++M+ +P+AIF+IDVG+HK AV+EA KL I
Sbjct: 121 EAG-LDSLSKKEQLTFSREIDKLEKDIGGIQDMSALPNAIFVIDVGFHKIAVAEAKKLGI 179

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225
            +IGVVDTNHSP+GI+YVIPGNDDSAK++ALY +GI DA ++ + 
Sbjct: 180 ALIGVVDTNHSPEGIDYVIPGNDDSAKAVALYARGIADAIIEGRA 224

Verminephrobacter eiseniae (strain EF01-2) (taxid: 391735)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	844
399017266	250	ribosomal protein S2 [Herbaspirillum sp.	0.266	0.9	0.715	5e-98
329912037	248	SSU ribosomal protein S2p (SAe) [Oxaloba	0.279	0.951	0.673	6e-98
152980757	264	30S ribosomal protein S2 [Janthinobacter	0.266	0.852	0.702	2e-97
134094560	248	30S ribosomal protein S2 [Herminiimonas	0.266	0.907	0.697	2e-97
209573709	248	RecName: Full=30S ribosomal protein S2	0.266	0.907	0.702	2e-97
340786521	250	30S ribosomal protein S2 [Collimonas fun	0.266	0.9	0.706	2e-97
398836105	247	ribosomal protein S2 [Herbaspirillum sp.	0.266	0.910	0.706	8e-97
237747785	246	30S ribosomal subunit protein S2 [Oxalob	0.280	0.963	0.662	5e-96
409405990	259	30S ribosomal protein S2 [Herbaspirillum	0.265	0.864	0.714	9e-94
300311493	246	30S ribosomal protein S2 [Herbaspirillum	0.265	0.910	0.714	3e-93

>gi|399017266|ref|ZP_10719463.1| ribosomal protein S2 [Herbaspirillum sp. CF444] gi|398104037|gb|EJL94194.1| ribosomal protein S2 [Herbaspirillum sp. CF444]

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 161/225 (71%), Positives = 197/225 (87%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY++A++Y+ QL 
Sbjct: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEALKYVRQLS 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+LFVGTKRQAR  +A EA RAG+P++DQRWLGG+LTNFKTIKTSI+RLK+M+  I
Sbjct: 61  SNRGTILFVGTKRQARETVAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAI 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +GS  KLSKKEALLF R+Q KL + IGGIK+M  IPDAIF+IDVGYHKGA++EA KL I
Sbjct: 121 ADGSNEKLSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225
           P+IGVVDTNHSP+G+ YVIPGNDDSAK+IALY +G+ DA L+ + 
Sbjct: 181 PVIGVVDTNHSPEGVTYVIPGNDDSAKAIALYARGVADAILEGRA 225

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|329912037|ref|ZP_08275648.1| SSU ribosomal protein S2p (SAe) [Oxalobacteraceae bacterium IMCC9480] gi|327545760|gb|EGF30894.1| SSU ribosomal protein S2p (SAe) [Oxalobacteraceae bacterium IMCC9480]

 Score =  365 bits (937), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 163/242 (67%), Positives = 202/242 (83%), Gaps = 6/242 (2%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ YIFGHRNKIHI+NLEKTL MY+ A++YI QL 
Sbjct: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPYIFGHRNKIHIVNLEKTLAMYQDAMKYIQQLS 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+L VGTKRQAR ++A EA RAGMPF+DQRWLGG+LTNFKTIKTSI+RLKEM+  I
Sbjct: 61  SNRGTILMVGTKRQAREIVAAEAARAGMPFVDQRWLGGMLTNFKTIKTSIKRLKEMEASI 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +GS+ KLSKKE L+F R+ +KL + IGGIK+M  IPDAIF++DVGYHKGA++EA KL I
Sbjct: 121 ADGSVEKLSKKEGLMFEREMIKLQKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMEC 240
           P+IGVVDTNHSP+G+ Y+IPGNDDS+K+I LY +G+ DA L      E R+ +L  ++E 
Sbjct: 181 PVIGVVDTNHSPEGVTYIIPGNDDSSKAIMLYARGVADAIL------EGRASSLNDVVEA 234

Query: 241 KK 242
            K
Sbjct: 235 VK 236

Source: Oxalobacteraceae bacterium IMCC9480

Species: Oxalobacteraceae bacterium IMCC9480

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|152980757|ref|YP_001353748.1| 30S ribosomal protein S2 [Janthinobacterium sp. Marseille] gi|151280834|gb|ABR89244.1| small subunit ribosomal protein S2 [Janthinobacterium sp. Marseille]

 Score =  363 bits (933), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 158/225 (70%), Positives = 199/225 (88%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ +IFGHRN+IHI+NLEKT+ MY++A++YI QL 
Sbjct: 17  MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNRIHIVNLEKTMGMYQEAMKYIRQLS 76

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+LFVGTKRQAR  IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKEM+  I
Sbjct: 77  SNRGTVLFVGTKRQARETIAAEAQRAGMPYVDQRWLGGMLTNFKTIKTSIKRLKEMEASI 136

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +GS++KLSKKEAL+F R+++KL + IGGIK+M  IPDAIF++DVGYHKGA++EA KL I
Sbjct: 137 EDGSVQKLSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGI 196

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225
           P+IGVVDTNHSP+G+ YVIPGNDDS+K+I LY +G+ DA L+ + 
Sbjct: 197 PVIGVVDTNHSPEGVTYVIPGNDDSSKAIMLYARGVADAILEGRA 241

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|134094560|ref|YP_001099635.1| 30S ribosomal protein S2 [Herminiimonas arsenicoxydans] gi|166225279|sp|A4G4S1.1|RS2_HERAR RecName: Full=30S ribosomal protein S2 gi|133738463|emb|CAL61508.1| 30S ribosomal subunit protein S2 [Herminiimonas arsenicoxydans]

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 157/225 (69%), Positives = 198/225 (88%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ YIFGHRN+IHI+NLEKTL MY++A++YI QL 
Sbjct: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPYIFGHRNRIHIVNLEKTLGMYQEAMKYIKQLS 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+LFVGTKRQAR  IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKE++  +
Sbjct: 61  SNRGTVLFVGTKRQARETIAAEAARAGMPYVDQRWLGGMLTNFKTIKTSIKRLKELEALV 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +GS+ KLSKKEAL+F R+++KL + IGGIK+M  IPDAIF++DVGYHKGA++EA KL I
Sbjct: 121 EDGSMEKLSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225
           P+IGVVDTNHSP+G+ Y+IPGNDDS+K+I LY +G+ DA L+ + 
Sbjct: 181 PVIGVVDTNHSPEGVAYIIPGNDDSSKAIMLYARGVADAILEGRA 225

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|209573709|sp|A6SZQ1.2|RS2_JANMA RecName: Full=30S ribosomal protein S2

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 158/225 (70%), Positives = 199/225 (88%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ +IFGHRN+IHI+NLEKT+ MY++A++YI QL 
Sbjct: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNRIHIVNLEKTMGMYQEAMKYIRQLS 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+LFVGTKRQAR  IA EA RAGMP++DQRWLGG+LTNFKTIKTSI+RLKEM+  I
Sbjct: 61  SNRGTVLFVGTKRQARETIAAEAQRAGMPYVDQRWLGGMLTNFKTIKTSIKRLKEMEASI 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +GS++KLSKKEAL+F R+++KL + IGGIK+M  IPDAIF++DVGYHKGA++EA KL I
Sbjct: 121 EDGSVQKLSKKEALMFEREKIKLEKSIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225
           P+IGVVDTNHSP+G+ YVIPGNDDS+K+I LY +G+ DA L+ + 
Sbjct: 181 PVIGVVDTNHSPEGVTYVIPGNDDSSKAIMLYARGVADAILEGRA 225

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340786521|ref|YP_004751986.1| 30S ribosomal protein S2 [Collimonas fungivorans Ter331] gi|340551788|gb|AEK61163.1| SSU ribosomal protein S2p (SAe) [Collimonas fungivorans Ter331]

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 159/225 (70%), Positives = 196/225 (87%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY++A++YI QL 
Sbjct: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAMKYIRQLS 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++G +LFVGTKRQAR ++A EA R+G PF+DQRWLGG+LTNFKTIKTSI+RLKEM+  I
Sbjct: 61  SNRGNILFVGTKRQAREIVAAEAARSGSPFVDQRWLGGMLTNFKTIKTSIKRLKEMEASI 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +GS+ KLSKKE L+F R+ +KL + IGGIK+M  IPDAIF+IDVGYHKGA++EA KL I
Sbjct: 121 EDGSVEKLSKKEGLMFQRELIKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225
           P+IGVVDTNHSPDG+ YVIPGNDDS+K+IALY +G+ DA L+ + 
Sbjct: 181 PVIGVVDTNHSPDGVTYVIPGNDDSSKAIALYARGVADAILEGRA 225

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398836105|ref|ZP_10593454.1| ribosomal protein S2 [Herbaspirillum sp. YR522] gi|398213936|gb|EJN00522.1| ribosomal protein S2 [Herbaspirillum sp. YR522]

 Score =  361 bits (927), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 159/225 (70%), Positives = 197/225 (87%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL ++++A +Y+ QL 
Sbjct: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGLFQEATKYVRQLS 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+LFVGTKRQAR ++A EA RAG+PF+DQRWLGG+LTNFKTIKTSI+RLK+M+  I
Sbjct: 61  SNRGTILFVGTKRQAREILAGEAQRAGVPFVDQRWLGGMLTNFKTIKTSIKRLKDMEASI 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +GS+ KLSKKE LLF R+  KL + IGGIK+M  IPDAIF+IDVGYHKGA++EA KL I
Sbjct: 121 EDGSVEKLSKKEGLLFRRELEKLQKSIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225
           P+IGVVDTNHSP+G+NY+IPGNDDSAK+IALY +GI DA L+ + 
Sbjct: 181 PVIGVVDTNHSPEGVNYIIPGNDDSAKAIALYARGIADAVLEGRA 225

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|237747785|ref|ZP_04578265.1| 30S ribosomal subunit protein S2 [Oxalobacter formigenes OXCC13] gi|229379147|gb|EEO29238.1| 30S ribosomal subunit protein S2 [Oxalobacter formigenes OXCC13]

 Score =  358 bits (920), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 161/243 (66%), Positives = 199/243 (81%), Gaps = 6/243 (2%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY  A+ YI QL 
Sbjct: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLAMYNDAMNYIRQLA 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+L VGTKRQAR +IA EA RAGMPF+DQRWLGG+LTNFKTIKTSI+RLK+M+  I
Sbjct: 61  ANRGTILMVGTKRQARDIIAAEAQRAGMPFVDQRWLGGMLTNFKTIKTSIKRLKDMEAAI 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +GS+ K+SKKE L+F R+  KL + IGGIK+MN +PDAIF++DVGYHKGA++EA KL I
Sbjct: 121 EDGSVEKMSKKEGLMFSREVEKLQKSIGGIKDMNGLPDAIFVVDVGYHKGAITEAAKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMEC 240
           P+IGVVDTNHSP+G+ YVIPGNDDS+K+I LY +G+ DA L      E R+  +  ++E 
Sbjct: 181 PVIGVVDTNHSPEGLAYVIPGNDDSSKAIQLYARGVADAIL------EGRANAMHDVLEA 234

Query: 241 KKA 243
            K 
Sbjct: 235 AKG 237

Source: Oxalobacter formigenes OXCC13

Species: Oxalobacter formigenes

Genus: Oxalobacter

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|409405990|ref|ZP_11254452.1| 30S ribosomal protein S2 [Herbaspirillum sp. GW103] gi|386434539|gb|EIJ47364.1| 30S ribosomal protein S2 [Herbaspirillum sp. GW103]

 Score =  351 bits (901), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 160/224 (71%), Positives = 199/224 (88%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY++A++Y+ QL 
Sbjct: 14  MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAVKYVRQLS 73

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+LFVGTKRQAR ++A EA RAG+P++DQRWLGG+LTNFKTIKTSI+RLK+M+  +
Sbjct: 74  ANRGTILFVGTKRQARDILAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAM 133

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +GS+ KLSKKEALLF R+Q KL + IGGIK+M  IPDAIF+IDVGYHKGA++EA KL I
Sbjct: 134 EDGSVEKLSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI 193

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           P+IGVVDTNHSP+G+ YVIPGNDDSAK+IALY +G+ DA L+ +
Sbjct: 194 PVIGVVDTNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGR 237

Source: Herbaspirillum sp. GW103

Species: Herbaspirillum sp. GW103

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300311493|ref|YP_003775585.1| 30S ribosomal protein S2 [Herbaspirillum seropedicae SmR1] gi|124483406|emb|CAM32576.1| 30S ribosomal subunit protein S2 [Herbaspirillum seropedicae] gi|300074278|gb|ADJ63677.1| 30S ribosomal subunit protein S2 [Herbaspirillum seropedicae SmR1]

 Score =  349 bits (896), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 160/224 (71%), Positives = 198/224 (88%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           MS+T+REMLEAGVHFGHQTRFWNPKM+ +IFGHRNKIHI+NLEKTL MY++A +Y+ QL 
Sbjct: 1   MSVTMREMLEAGVHFGHQTRFWNPKMAPFIFGHRNKIHIVNLEKTLGMYQEAQKYVRQLS 60

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            ++GT+LFVGTKRQAR ++A EA RAG+P++DQRWLGG+LTNFKTIKTSI+RLK+M+  +
Sbjct: 61  ANRGTILFVGTKRQAREILAAEAQRAGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAV 120

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +GS+ KLSKKEALLF R+Q KL + IGGIK+M  IPDAIF+IDVGYHKGA++EA KL I
Sbjct: 121 EDGSVEKLSKKEALLFSREQEKLQKAIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGI 180

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           P+IGVVDTNHSP+G+ YVIPGNDDSAK+IALY +G+ DA L+ +
Sbjct: 181 PVIGVVDTNHSPEGVTYVIPGNDDSAKAIALYARGMADAVLEGR 224

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	844
UNIPROTKB|Q9KPV2	242	rpsB "30S ribosomal protein S2	0.283	0.987	0.479	2.7e-61
TIGR_CMR|VC_2260	242	VC_2260 "ribosomal protein S2"	0.283	0.987	0.479	2.7e-61
TIGR_CMR|GSU_1921	251	GSU_1921 "ribosomal protein S2	0.261	0.880	0.524	5e-60
TIGR_CMR|CPS_1553	242	CPS_1553 "ribosomal protein S2	0.264	0.921	0.475	1.3e-59
TIGR_CMR|SO_1629	242	SO_1629 "ribosomal protein S2"	0.258	0.900	0.5	4.5e-59
UNIPROTKB|P0A7V0	241	rpsB [Escherichia coli K-12 (t	0.281	0.987	0.475	7.3e-59
TIGR_CMR|CHY_1787	232	CHY_1787 "ribosomal protein S2	0.266	0.969	0.491	9.6e-57
TIGR_CMR|ECH_0514	288	ECH_0514 "ribosomal protein S2	0.259	0.760	0.5	3.3e-56
TIGR_CMR|BA_3965	233	BA_3965 "ribosomal protein S2"	0.266	0.965	0.495	8.6e-56
TIGR_CMR|DET_0377	245	DET_0377 "ribosomal protein S2	0.260	0.897	0.463	3.3e-54

UNIPROTKB|Q9KPV2 rpsB "30S ribosomal protein S2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 118/246 (47%), Positives = 175/246 (71%)

Query:     2 SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGF 61
             S+++R+ML AGVHFGHQTR+WNPKM  +IFG RN++HIINLEKT+ M+ +A+  + ++G 
Sbjct:     3 SVSMRDMLTAGVHFGHQTRYWNPKMKQFIFGARNRVHIINLEKTVPMFNEALAELAKVGE 62

Query:    62 SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 121
              KG +LFVGTKR A   +   A+ +   +++ RWLGG+LTN+KT++ SI+RLKE+++  T
Sbjct:    63 KKGKVLFVGTKRAASESVKEAALASNQYYVNNRWLGGMLTNWKTVRQSIKRLKELEVQST 122

Query:   122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181
             +G+  KL+KKEAL+  R+  KL + +GGIK+M  +PDA+F+ID  +   A+ EA  L IP
Sbjct:   123 DGTFDKLTKKEALMRTREMEKLEKSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIP 182

Query:   182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECK 241
             +  VVDTN SPDG++Y+IPGNDD+ +++ LY          A+ + E R+K +A + E K
Sbjct:   183 VFAVVDTNSSPDGVDYIIPGNDDAIRAVQLYLNAA------AQAINEGRNKDVAAVAE-K 235

Query:   242 KALIEA 247
                +EA
Sbjct:   236 DGFVEA 241

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2260 VC_2260 "ribosomal protein S2" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 118/246 (47%), Positives = 175/246 (71%)

Query:     2 SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGF 61
             S+++R+ML AGVHFGHQTR+WNPKM  +IFG RN++HIINLEKT+ M+ +A+  + ++G 
Sbjct:     3 SVSMRDMLTAGVHFGHQTRYWNPKMKQFIFGARNRVHIINLEKTVPMFNEALAELAKVGE 62

Query:    62 SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 121
              KG +LFVGTKR A   +   A+ +   +++ RWLGG+LTN+KT++ SI+RLKE+++  T
Sbjct:    63 KKGKVLFVGTKRAASESVKEAALASNQYYVNNRWLGGMLTNWKTVRQSIKRLKELEVQST 122

Query:   122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181
             +G+  KL+KKEAL+  R+  KL + +GGIK+M  +PDA+F+ID  +   A+ EA  L IP
Sbjct:   123 DGTFDKLTKKEALMRTREMEKLEKSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIP 182

Query:   182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECK 241
             +  VVDTN SPDG++Y+IPGNDD+ +++ LY          A+ + E R+K +A + E K
Sbjct:   183 VFAVVDTNSSPDGVDYIIPGNDDAIRAVQLYLNAA------AQAINEGRNKDVAAVAE-K 235

Query:   242 KALIEA 247
                +EA
Sbjct:   236 DGFVEA 241

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|GSU_1921 GSU_1921 "ribosomal protein S2" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 116/221 (52%), Positives = 161/221 (72%)

Query:     2 SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGF 61
             +IT++E+LEAGVHFGHQT+ WNPKM  YIFG RN I+II+L+KT+ +++ A  ++ +   
Sbjct:     3 NITMKELLEAGVHFGHQTKRWNPKMKPYIFGARNGIYIIDLQKTVRLFKNAYNFVRENAQ 62

Query:    62 SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 121
             +  T+LFVGTK+QA+  I  EAVR GM F++QRWLGG+LTNF T+K SI RLK +D    
Sbjct:    63 AGETMLFVGTKKQAQDAIGEEAVRCGMYFVNQRWLGGMLTNFVTVKQSIDRLKRLDAMFA 122

Query:   122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181
             +GSI   +KKEAL   +++ KL +++GGIK M  +P A+F+ID      A+SEA KL IP
Sbjct:   123 DGSIEAYTKKEALQLEKEREKLEKILGGIKGMGKLPGALFVIDPKNETIAISEAKKLGIP 182

Query:   182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD 222
             ++ VVDTN  PD I+YVIPGNDD+ ++I L T  + DA ++
Sbjct:   183 VVAVVDTNCDPDPIDYVIPGNDDAIRAIRLLTSKMADAVIE 223

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|CPS_1553 CPS_1553 "ribosomal protein S2" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 106/223 (47%), Positives = 166/223 (74%)

Query:     2 SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGF 61
             ++++R+ML+AGVHFGH+TR+WNPKM  +IFG R+K+HIINLE+T+ M+ +A+ ++  +  
Sbjct:     3 NVSMRDMLKAGVHFGHKTRYWNPKMKQFIFGARDKVHIINLEQTVPMFNEALAFVNNVSS 62

Query:    62 SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 121
              KG +LFVGTKR A   I + A+++   +++ RWLGG+LTN+KT++ SI+RLK+++   T
Sbjct:    63 KKGKVLFVGTKRAASDAIKDAAIKSDQFYVNHRWLGGMLTNWKTVRQSIKRLKDLESQST 122

Query:   122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181
             +G+   L+KKEAL+  R+  KL++ +GGIKNM  +PD +FIID  +   A+ EA  L IP
Sbjct:   123 DGTFEALTKKEALMRTREMEKLDKSLGGIKNMGGLPDVLFIIDADHEHIAIKEANNLGIP 182

Query:   182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
             +I VVDTN +PDG++YV+PGNDD+ +++ LY   + ++ L  +
Sbjct:   183 VISVVDTNSNPDGVDYVVPGNDDAIRAVTLYCDAVANSVLSGR 225

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

TIGR_CMR|SO_1629 SO_1629 "ribosomal protein S2" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 109/218 (50%), Positives = 157/218 (72%)

Query:     2 SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGF 61
             ++++R+ML+AGVHFGHQTR+WNPKM  +IFG RN +HIINLE T+ M+ +A+ +I  +  
Sbjct:     3 TVSMRDMLQAGVHFGHQTRYWNPKMKPFIFGARNGVHIINLEHTVPMFNEALAFISNVAS 62

Query:    62 SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 121
              KG +LFVGTKR A   I   A+     ++D RWLGG+LTN+KT++ SI+RLKE++    
Sbjct:    63 KKGKVLFVGTKRAAGEAIKEAAISCDQYYVDHRWLGGMLTNWKTVRQSIKRLKELESQSV 122

Query:   122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181
             +G+  KL+KKEAL+  R+  KL + +GGIKNM  +PD +F+I   +   A+ EA  L IP
Sbjct:   123 DGTFDKLTKKEALMRTRELEKLEKSLGGIKNMGGLPDVLFVIGADHEHIAIKEANNLGIP 182

Query:   182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDA 219
             ++ VVDTN +PDG+NY++PGNDD+ ++I LYT  +  A
Sbjct:   183 VVAVVDTNSAPDGVNYIVPGNDDAMRAIRLYTTSVAAA 220

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0A7V0 rpsB [Escherichia coli K-12 (taxid:83333)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 117/246 (47%), Positives = 174/246 (70%)

Query:     2 SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGF 61
             ++++R+ML+AGVHFGHQTR+WNPKM  +IFG RNK+HIINLEKT+ M+ +A+  + ++  
Sbjct:     3 TVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIAS 62

Query:    62 SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 121
              KG +LFVGTKR A   + + A+     F++ RWLGG+LTN+KT++ SI+RLK+++    
Sbjct:    63 RKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQ 122

Query:   122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181
             +G+  KL+KKEAL+  R+  KL   +GGIK+M  +PDA+F+ID  +   A+ EA  L IP
Sbjct:   123 DGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIP 182

Query:   182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECK 241
             +  +VDTN  PDG+++VIPGNDD+ +++ LY  G V     A TV E RS+ LA   + +
Sbjct:   183 VFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYL-GAV-----AATVREGRSQDLAS--QAE 234

Query:   242 KALIEA 247
             ++ +EA
Sbjct:   235 ESFVEA 240

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA;IPI

GO:0008270 "zinc ion binding" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|CHY_1787 CHY_1787 "ribosomal protein S2" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 111/226 (49%), Positives = 160/226 (70%)

Query:     3 ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFS 62
             I+++++LEAGVHFGHQTR WNPKM+ YIF  RN I+II+L+KT    E+A  ++ +L   
Sbjct:     4 ISMKQLLEAGVHFGHQTRRWNPKMAEYIFTDRNGIYIIDLQKTAKKLEEAYSFVRELSAQ 63

Query:    63 KGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITN 122
              GT+LFVGTK+QA+  I  EA R GM +++QRWLGG LTNFKTI+  ++RL E++     
Sbjct:    64 GGTILFVGTKKQAQDAIKEEAERCGMFYVNQRWLGGTLTNFKTIRKRVERLIEIEKMEQE 123

Query:   123 GSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPI 182
             G++  L KKE     +++ KL+R + GIK M  +PDA+F++D    K AV+EA KL+IP+
Sbjct:   124 GALSVLPKKEVAKILKEKEKLSRFLSGIKEMKKLPDALFVVDPRKEKIAVAEARKLDIPV 183

Query:   183 IGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGE 228
             + +VDTN  PD ++YVIPGNDD+ +++ L T  I DA ++ +  GE
Sbjct:   184 VAIVDTNCDPDEVDYVIPGNDDAIRAVKLITSKIADAVIEGRQ-GE 228

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|ECH_0514 ECH_0514 "ribosomal protein S2" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 110/220 (50%), Positives = 156/220 (70%)

Query:     4 TIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSK 63
             T+R+++E+GVHFGH+   WNPKM+ YI+G  N IHIINL+ T+ + + A++ +Y +   +
Sbjct:     8 TMRDLVESGVHFGHKASRWNPKMAPYIYGVHNDIHIINLQNTVVLLKNALKALYDIVLKR 67

Query:    64 GTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNG 123
             G +LF+GTK QA  +IA+EAVR G  +I+ RWLGG+LTN++TI  SI++LKE +  I N 
Sbjct:    68 GRVLFIGTKVQASAIIADEAVRCGQYYINNRWLGGMLTNWETISLSIKKLKEYEKLIENV 127

Query:   124 SIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPII 183
                + +KKE LLF +K+ KL+R IGGI NM  +P A+F+ID      A+ EA KLNIP+I
Sbjct:   128 D-NQFTKKELLLFEKKRAKLDRSIGGICNMGGLPHALFVIDTNKEHIAIKEANKLNIPVI 186

Query:   184 GVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDA 223
              V+DTN  P GI+Y IPGNDD+ +SI  + K + D  L+A
Sbjct:   187 AVLDTNSDPAGIDYPIPGNDDAVRSIDFFCKIVSDTILEA 226

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

TIGR_CMR|BA_3965 BA_3965 "ribosomal protein S2" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 112/226 (49%), Positives = 161/226 (71%)

Query:     3 ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFS 62
             I+++++LEAGVHFGHQTR WNPKM  YIF  RN I+II+L+KT+   E+A + +  +   
Sbjct:     4 ISMKQLLEAGVHFGHQTRRWNPKMKRYIFTERNGIYIIDLQKTVKKVEEAFKVMRDIAAE 63

Query:    63 KGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITN 122
              G +LFVGTK+QA+  I  EA RAGM F++QRWLGG LTNF+TI+  I+RLK+++    +
Sbjct:    64 GGDILFVGTKKQAQEAIKEEATRAGMYFVNQRWLGGTLTNFQTIQKRIKRLKDIERMQED 123

Query:   123 GSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPI 182
             G+   L KKE +   ++  +L + +GGIK+M  +P A+F++D    + AV+EA KL+IPI
Sbjct:   124 GTFEVLPKKEVVQLKKELERLEKFLGGIKDMKGLPSALFVVDPRKERIAVAEARKLHIPI 183

Query:   183 IGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGE 228
             IG+VDTN  PD I++VIP NDD+ +++ L T  + DA L+AK  GE
Sbjct:   184 IGIVDTNCDPDEIDHVIPANDDAIRAVKLLTSKMADAILEAKQ-GE 228

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|DET_0377 DET_0377 "ribosomal protein S2" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 533 (192.7 bits), Expect = 3.3e-54, Sum P(2) = 3.3e-54
 Identities = 102/220 (46%), Positives = 148/220 (67%)

Query:     5 IREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKG 64
             I+E+LEAG HFGHQT  W+P+M  YIF  RN IHII+LEKT+ M +KA  YI Q+    G
Sbjct:     6 IKELLEAGAHFGHQTSRWHPRMKKYIFTKRNGIHIIDLEKTVVMLDKACNYINQVVSEGG 65

Query:    65 TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGS 124
              +LFVGTK+QA+ ++A EA R GM FI+QRW GG+LTNF +I++ I  L  ++     G 
Sbjct:    66 KVLFVGTKKQAQEILAEEAKRCGMYFINQRWTGGILTNFHSIQSRIDYLVRLEDQQARGD 125

Query:   125 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIG 184
               +L KKEA     +  +LNR +GG K M  +PD IF++D    K A++EA ++ +P++ 
Sbjct:   126 FNRLPKKEAQKLAEEIARLNRTMGGFKEMTRLPDVIFVVDPTKEKIAMAEAKRMGVPLVA 185

Query:   185 VVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
             +VDTN +PD ++Y IP NDD+ ++I L    + D+ ++A+
Sbjct:   186 MVDTNCNPDEVDYPIPSNDDAMRAIKLICSKMADSVIEAQ 225

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015935 "small ribosomal subunit" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1XTU3	RS2_POLNS	No assigned EC number	0.6266	0.2665	0.9036	yes	N/A
A1V569	RS2_BURMS	No assigned EC number	0.6607	0.2654	0.9105	yes	N/A
Q63T12	RS2_BURPS	No assigned EC number	0.6607	0.2654	0.9105	yes	N/A
B4ECN1	RS2_BURCJ	No assigned EC number	0.6473	0.2654	0.9105	yes	N/A
A4G4S1	RS2_HERAR	No assigned EC number	0.6977	0.2665	0.9072	yes	N/A
Q1H139	RS2_METFK	No assigned EC number	0.6428	0.2654	0.8995	yes	N/A
Q12A31	RS2_POLSJ	No assigned EC number	0.6488	0.2654	0.896	yes	N/A
Q470D7	RS2_CUPPJ	No assigned EC number	0.6651	0.2654	0.9068	yes	N/A
Q7WA60	RS2_BORPA	No assigned EC number	0.6409	0.2606	0.8835	yes	N/A
B1XXJ5	RS2_LEPCP	No assigned EC number	0.6517	0.2642	0.8991	yes	N/A
A2SB72	RS2_BURM9	No assigned EC number	0.6607	0.2654	0.9105	yes	N/A
Q0KA16	RS2_CUPNH	No assigned EC number	0.6607	0.2654	0.9032	yes	N/A
B9MGL7	RS2_ACIET	No assigned EC number	0.6651	0.2642	0.892	yes	N/A
Q39F43	RS2_BURS3	No assigned EC number	0.6473	0.2654	0.9105	yes	N/A
Q0AEH4	RS2_NITEC	No assigned EC number	0.6116	0.2654	0.8924	yes	N/A
A4JF75	RS2_BURVG	No assigned EC number	0.6517	0.2654	0.9105	yes	N/A
A3NAU8	RS2_BURP6	No assigned EC number	0.6607	0.2654	0.9105	yes	N/A
B1YS74	RS2_BURA4	No assigned EC number	0.6517	0.2654	0.9105	yes	N/A
A1TN69	RS2_ACIAC	No assigned EC number	0.6577	0.2654	0.896	yes	N/A
A0K8E3	RS2_BURCH	No assigned EC number	0.6473	0.2654	0.9105	yes	N/A
Q1BHI2	RS2_BURCA	No assigned EC number	0.6473	0.2654	0.9105	yes	N/A
Q8XZJ1	RS2_RALSO	No assigned EC number	0.6741	0.2654	0.9068	yes	N/A
C5CKS0	RS2_VARPS	No assigned EC number	0.6517	0.2642	0.892	yes	N/A
Q13XB6	RS2_BURXL	No assigned EC number	0.6562	0.2654	0.896	yes	N/A
B2UB06	RS2_RALPJ	No assigned EC number	0.6830	0.2654	0.9068	yes	N/A
A4SYV1	RS2_POLSQ	No assigned EC number	0.6266	0.2665	0.9036	yes	N/A
A6SZQ1	RS2_JANMA	No assigned EC number	0.7022	0.2665	0.9072	yes	N/A
B3R2B7	RS2_CUPTR	No assigned EC number	0.6651	0.2654	0.9068	yes	N/A
Q7WJ94	RS2_BORBR	No assigned EC number	0.6409	0.2606	0.8835	yes	N/A
A9BMN2	RS2_DELAS	No assigned EC number	0.6562	0.2642	0.892	yes	N/A
A3NWN1	RS2_BURP0	No assigned EC number	0.6607	0.2654	0.9105	yes	N/A
Q2L162	RS2_BORA1	No assigned EC number	0.6590	0.2606	0.8835	yes	N/A
A1W918	RS2_ACISJ	No assigned EC number	0.6607	0.2642	0.892	yes	N/A
B2T5J4	RS2_BURPP	No assigned EC number	0.6607	0.2654	0.896	yes	N/A
B2JIC6	RS2_BURP8	No assigned EC number	0.6517	0.2654	0.896	yes	N/A
Q1LNF8	RS2_RALME	No assigned EC number	0.6651	0.2654	0.9068	yes	N/A
Q2YBA7	RS2_NITMU	No assigned EC number	0.6517	0.2654	0.9032	yes	N/A
Q0BE15	RS2_BURCM	No assigned EC number	0.6517	0.2654	0.9105	yes	N/A
A1WHU2	RS2_VEREI	No assigned EC number	0.6533	0.2654	0.896	yes	N/A
A1K6S1	RS2_AZOSB	No assigned EC number	0.6355	0.2665	0.8964	yes	N/A
A1VN40	RS2_POLNA	No assigned EC number	0.6355	0.2654	0.896	yes	N/A
Q62JC4	RS2_BURMA	No assigned EC number	0.6607	0.2654	0.9105	yes	N/A
Q21WY9	RS2_RHOFD	No assigned EC number	0.6355	0.2654	0.896	yes	N/A
Q2SWZ8	RS2_BURTA	No assigned EC number	0.6473	0.2654	0.9105	yes	N/A
Q7VYD0	RS2_BORPE	No assigned EC number	0.6409	0.2606	0.8835	yes	N/A
A3MKU3	RS2_BURM7	No assigned EC number	0.6607	0.2654	0.9105	yes	N/A
B1JUF0	RS2_BURCC	No assigned EC number	0.6473	0.2654	0.9105	yes	N/A
Q47F92	RS2_DECAR	No assigned EC number	0.6577	0.2665	0.9072	yes	N/A
Q3JR28	RS2_BURP1	No assigned EC number	0.6607	0.2654	0.9105	yes	N/A
Q5NZH5	RS2_AROAE	No assigned EC number	0.6355	0.2665	0.8964	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.691
4th Layer	2.7.4.22	LOW CONFIDENCE prediction!
4th Layer	2.7.2.4	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	844
PRK05299	258	PRK05299, rpsB, 30S ribosomal protein S2; Provisio	1e-123
cd04254	231	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t	1e-109
PRK00358	231	PRK00358, pyrH, uridylate kinase; Provisional	1e-103
COG0052	252	COG0052, RpsB, Ribosomal protein S2 [Translation,	4e-99
TIGR02075	232	TIGR02075, pyrH_bact, uridylate kinase	6e-94
TIGR01011	225	TIGR01011, rpsB_bact, ribosomal protein S2, bacter	1e-92
cd04239	229	cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase	9e-90
COG0528	238	COG0528, PyrH, Uridylate kinase [Nucleotide transp	1e-89
pfam00318	205	pfam00318, Ribosomal_S2, Ribosomal protein S2	2e-84
PRK12311	326	PRK12311, rpsB, 30S ribosomal protein S2/unknown d	4e-77
PRK09377	290	PRK09377, tsf, elongation factor Ts; Provisional	7e-76
cd01425	193	cd01425, RPS2, Ribosomal protein S2 (RPS2), involv	5e-71
PRK00083	185	PRK00083, frr, ribosome recycling factor; Reviewed	7e-70
CHL00067	230	CHL00067, rps2, ribosomal protein S2	3e-69
COG0264	296	COG0264, Tsf, Translation elongation factor Ts [Tr	2e-64
COG0233	187	COG0233, Frr, Ribosome recycling factor [Translati	7e-63
PRK14558	231	PRK14558, pyrH, uridylate kinase; Provisional	4e-60
pfam01765	165	pfam01765, RRF, Ribosome recycling factor	1e-58
PRK14556	249	PRK14556, pyrH, uridylate kinase; Provisional	1e-54
cd00520	179	cd00520, RRF, Ribosome recycling factor (RRF)	9e-53
TIGR00496	176	TIGR00496, frr, ribosome recycling factor	3e-48
PRK14557	247	PRK14557, pyrH, uridylate kinase; Provisional	1e-45
TIGR00116	291	TIGR00116, tsf, translation elongation factor Ts	4e-42
PRK12332	198	PRK12332, tsf, elongation factor Ts; Reviewed	2e-31
CHL00098	200	CHL00098, tsf, elongation factor Ts	5e-27
cd02115	248	cd02115, AAK, Amino Acid Kinases (AAK) superfamily	3e-21
pfam00696	230	pfam00696, AA_kinase, Amino acid kinase family	1e-20
cd04253	221	cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP k	3e-16
TIGR02076	221	TIGR02076, pyrH_arch, uridylate kinase, putative	1e-14
pfam00889	134	pfam00889, EF_TS, Elongation factor TS	1e-13
pfam00889	134	pfam00889, EF_TS, Elongation factor TS	2e-11
cd04246	239	cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino	3e-11
cd04261	239	cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino	4e-10
PRK12332	198	PRK12332, tsf, elongation factor Ts; Reviewed	1e-09
TIGR01012	196	TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosol	2e-09
TIGR00657	441	TIGR00657, asp_kinases, aspartate kinase	5e-08
PRK04020	204	PRK04020, rps2P, 30S ribosomal protein S2; Provisi	6e-08
TIGR00656	401	TIGR00656, asp_kin_monofn, aspartate kinase, monof	1e-07
COG0527	447	COG0527, LysC, Aspartokinases [Amino acid transpor	2e-07
cd04234	227	cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfa	7e-07
cd04260	244	cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A	1e-06
PRK08210	403	PRK08210, PRK08210, aspartate kinase I; Reviewed	2e-06
PRK06635	404	PRK06635, PRK06635, aspartate kinase; Reviewed	1e-05
cd04258	292	cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Ami	1e-05
cd04243	293	cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino	1e-04
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	4e-04
PRK09084	448	PRK09084, PRK09084, aspartate kinase III; Validate	7e-04
COG1608	252	COG1608, COG1608, Predicted archaeal kinase [Gener	0.001
cd04255	262	cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD i	0.001
PTZ00254	249	PTZ00254, PTZ00254, 40S ribosomal protein SA; Prov	0.003
cd04244	298	cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino	0.003
PRK08841	392	PRK08841, PRK08841, aspartate kinase; Validated	0.004

>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional

 Score =  371 bits (956), Expect = e-123
 Identities = 119/224 (53%), Positives = 166/224 (74%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
             ++++++LEAGVHFGHQTR WNPKM  YIFG RN IHII+L+KT+ M ++A  ++  + 
Sbjct: 2   AVVSMKQLLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPMLDEAYNFVRDVA 61

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
            + G +LFVGTK+QA+  IA EA R GMP+++ RWLGG+LTNFKTI+ SI+RLKE++   
Sbjct: 62  ANGGKILFVGTKKQAQEAIAEEAERCGMPYVNHRWLGGMLTNFKTIRKSIKRLKELEKME 121

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +G+  KL+KKEAL+  R+  KL + +GGIK+M  +PDA+F++D      AV EA KL I
Sbjct: 122 EDGTFEKLTKKEALMLTRELEKLEKSLGGIKDMGGLPDALFVVDPNKEHIAVKEARKLGI 181

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           P++ +VDTN  PDG++Y IPGNDD+ +SI LYT  I DA L+ +
Sbjct: 182 PVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGR 225

Length = 258

>gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score =  334 bits (858), Expect = e-109
 Identities = 122/223 (54%), Positives = 163/223 (73%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           GEAL   + + I+  ++  I  EI E+V  G+E+AIV+GGGNI RG S     +DR+TAD
Sbjct: 9   GEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMDRATAD 68

Query: 492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 551
           YMGMLAT+IN+LAL D L   G+ + VMSAI ++   E YI   AI++LE+G+VVIFAGG
Sbjct: 69  YMGMLATVINALALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGG 128

Query: 552 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 611
            GNPFFTTDT AALRA EI A++ILKATKVDG+Y++DP K  +A  Y  +T+DEV+SK L
Sbjct: 129 TGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSKGL 188

Query: 612 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654
           ++MD+TAF+ CRD  LPI VF+I + G L + ++G+  GTL+ 
Sbjct: 189 KVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231

>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional

 Score =  317 bits (815), Expect = e-103
 Identities = 118/222 (53%), Positives = 161/222 (72%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           GEAL     + I+  ++  I  EI E+V  G+E+AIV+GGGNI RG       +DR+TAD
Sbjct: 9   GEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGMDRATAD 68

Query: 492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 551
           YMGMLAT++N+LAL D L ++G+ + V SAI + +  E YI   AI++LE+G+VVIFA G
Sbjct: 69  YMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAG 128

Query: 552 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 611
            GNPFFTTDT AALRA EI A+++LKAT VDG+Y++DP K   A  Y ++T+DEV+ K L
Sbjct: 129 TGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGL 188

Query: 612 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
           ++MD+TA S  RD K+PI VF++ K G LKRV++G++ GTLV
Sbjct: 189 KVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLV 230

Length = 231

>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]

 Score =  308 bits (791), Expect = 4e-99
 Identities = 115/252 (45%), Positives = 168/252 (66%), Gaps = 3/252 (1%)

Query: 3   ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFS 62
           ++++++LEAGVHFGHQTR WNPKM  +IFG RN IHII+L+KTL    +A +++ ++  +
Sbjct: 4   VSMKQLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAAN 63

Query: 63  KGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITN 122
            G +LFVGTK+QA+  +   A R G  +++ RWLGG+LTNFKTI+ SI+RLKE++    +
Sbjct: 64  GGKILFVGTKKQAQEPVKEFAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEED 123

Query: 123 GSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPI 182
           G    L+KKEAL+  R+  KL + +GGIK+M  +PD +F+ID    K AV EA KL IP+
Sbjct: 124 G-FDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLFVIDPRKEKIAVKEANKLGIPV 182

Query: 183 IGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKK 242
           + +VDTN  PDG++YVIPGNDD+ +SIAL    +  A L+ +  G    +  A I E ++
Sbjct: 183 VALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGR--GGALDEEEAAIEEDEE 240

Query: 243 ALIEANGKLSKA 254
                  + +  
Sbjct: 241 VEEFEAKEEAAE 252

Length = 252

>gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase

 Score =  294 bits (754), Expect = 6e-94
 Identities = 128/222 (57%), Positives = 157/222 (70%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           GEAL     + I+   +  I +EI E+V  GIE+ IVIGGGNI RG+S     IDR +AD
Sbjct: 10  GEALAGESQFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAAELGIDRVSAD 69

Query: 492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 551
           YMGMLAT+IN LAL D L K G+ + V+SAIS+ +  ESYI   AIK+LE+GKVVIF+GG
Sbjct: 70  YMGMLATVINGLALRDALEKLGLKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGG 129

Query: 552 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 611
            GNPFFTTDT AALRA EI A++ILK T VDG+Y +DP K   A  Y  IT++E + K L
Sbjct: 130 TGNPFFTTDTAAALRAIEINADVILKGTNVDGVYTADPKKNKDAKKYDTITYNEALKKNL 189

Query: 612 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
           ++MD TAF+  RD  LPI VF+I K GALK+VI GK  GTLV
Sbjct: 190 KVMDLTAFALARDNNLPIVVFNIDKPGALKKVILGKGIGTLV 231

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076 [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 232

>gnl|CDD|130084 TIGR01011, rpsB_bact, ribosomal protein S2, bacterial type

 Score =  290 bits (744), Expect = 1e-92
 Identities = 114/222 (51%), Positives = 165/222 (74%)

Query: 3   ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFS 62
           ++++++LEAGVHFGHQTR WNPKM  +IFG RN IHII+L+KTL + ++A  ++  +  +
Sbjct: 2   VSMKDLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLQLLKEAYNFVKDVAAN 61

Query: 63  KGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITN 122
            G +LFVGTK+QA+ +I  EA R GM +++QRWLGG+LTNFKTI+ SI++LK+++    +
Sbjct: 62  GGKILFVGTKKQAKEIIKEEAERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEED 121

Query: 123 GSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPI 182
           G+   L+KKEAL+  R++ KL + +GGIK+M  +PD +F+ID    K AV+EA KL IP+
Sbjct: 122 GTFDDLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLFVIDPVKEKIAVAEARKLGIPV 181

Query: 183 IGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           + +VDTN  PD ++Y IPGNDD+ +SI L T  I DA L+ K
Sbjct: 182 VAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGK 223

This model describes the bacterial, ribosomal, and chloroplast forms of ribosomal protein S2. TIGR01012 describes the archaeal and cytosolic forms [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 225

>gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

 Score =  282 bits (725), Expect = 9e-90
 Identities = 113/223 (50%), Positives = 160/223 (71%), Gaps = 1/223 (0%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           GEAL  G+   I+  ++K I  EI E+V  G+E+AIV+GGGNI RG     + + R+TAD
Sbjct: 8   GEALA-GEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPRATAD 66

Query: 492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 551
           Y+GMLAT++N+LAL D L K G+ + VMSAI ++   E YI   AI++LE+G++VIF GG
Sbjct: 67  YIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGG 126

Query: 552 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 611
            GNP FTTDT AALRA EI A+++LKAT VDG+Y++DP K   A  Y +I++DE++ K L
Sbjct: 127 TGNPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL 186

Query: 612 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654
           ++MD+TA + CR  K+PI VF+ +K G L R ++G++ GTL+ 
Sbjct: 187 KVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 229

>gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism]

 Score =  282 bits (725), Expect = 1e-89
 Identities = 114/223 (51%), Positives = 156/223 (69%), Gaps = 1/223 (0%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           GEAL     + I+  ++  I +EI E+V  G+E+A+V+GGGNI RG       +DR TAD
Sbjct: 14  GEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTAD 73

Query: 492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 551
           YMGMLAT++N+LAL D L + G+ + V SAI++ +  E Y    AI++LE+G+VVIF GG
Sbjct: 74  YMGMLATVMNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGG 133

Query: 552 IGNPFFTTDTTAALRAAEIKAEIILKAT-KVDGIYNSDPNKCLSAIIYKKITFDEVISKK 610
            GNP FTTDT AALRA EI+A+++LKAT KVDG+Y++DP K   A  Y  +T+DEV+   
Sbjct: 134 TGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIG 193

Query: 611 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
           L++MD TAFS  RD  +PI VF+I K G LKR ++G+  GT+V
Sbjct: 194 LKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIV 236

Length = 238

>gnl|CDD|215856 pfam00318, Ribosomal_S2, Ribosomal protein S2

 Score =  267 bits (686), Expect = 2e-84
 Identities = 111/217 (51%), Positives = 142/217 (65%), Gaps = 12/217 (5%)

Query: 8   MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 67
           +LEAGVHFGHQTR WNPKM  YI+G RN IHII+LEKTL    KA  +I ++    G +L
Sbjct: 1   LLEAGVHFGHQTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRKAANFIKEIAAKGGKIL 60

Query: 68  FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 127
           FVGTK+QA+  +   A R G  +++ RWLGG LTN+KTIK SI+RL+E            
Sbjct: 61  FVGTKKQAQEAVKKFAKRTGQFYVNGRWLGGTLTNWKTIKKSIKRLEE------------ 108

Query: 128 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 187
           LSKKEAL   R+  KL + +GGIKNM  +PD + ++D      A+ EA KL IP+I +VD
Sbjct: 109 LSKKEALKLKRELEKLEKYLGGIKNMKKLPDLVIVVDPNKEHIAIKEASKLGIPVIAIVD 168

Query: 188 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           TN  PD I+Y IPGNDDS +SIAL    +  A L+ +
Sbjct: 169 TNCDPDLIDYPIPGNDDSIRSIALILWLLARAILEGR 205

Length = 205

>gnl|CDD|183428 PRK12311, rpsB, 30S ribosomal protein S2/unknown domain fusion protein; Provisional

 Score =  252 bits (646), Expect = 4e-77
 Identities = 106/218 (48%), Positives = 151/218 (69%)

Query: 5   IREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKG 64
           +R++LEAGVHFGHQ+  WNPKM+ YIFG RN IHII+L +T+ +  +A++ +       G
Sbjct: 1   MRQLLEAGVHFGHQSHRWNPKMAPYIFGTRNNIHIIDLAQTVPLLHRALQAVSDTVAKGG 60

Query: 65  TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGS 124
            +LFVGTKRQA+  +A+ A R+   F++ RWLGG LTN+KTI  SIQRL+++D  +++G 
Sbjct: 61  RVLFVGTKRQAQDAVADAAKRSAQYFVNSRWLGGTLTNWKTISGSIQRLRKLDEVLSSGE 120

Query: 125 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIG 184
               +KKE L   R++ KL+R +GGIK+M  +PD +F+ID      A+ EA +L IP+  
Sbjct: 121 ANGYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVIDTNKEDIAIQEAQRLGIPVAA 180

Query: 185 VVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD 222
           +VDTN  PDGI Y +PGNDD+ ++IALY   I  A +D
Sbjct: 181 IVDTNCDPDGITYPVPGNDDAGRAIALYCDLIARAAID 218

Length = 326

>gnl|CDD|236491 PRK09377, tsf, elongation factor Ts; Provisional

 Score =  248 bits (635), Expect = 7e-76
 Identities = 89/213 (41%), Positives = 130/213 (61%), Gaps = 4/213 (1%)

Query: 222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAI 281
            A  V ELR +T A +M+CKKAL EA+G + KA E LR K   K    + R A +G++A 
Sbjct: 5   TAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEGLVAA 64

Query: 282 YISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVD 341
            +    G LVE+N ETDFVAKN +F   + ++A+      P +++ L  LK+     TV+
Sbjct: 65  KVDGNKGVLVEVNSETDFVAKNEDFQALANEVAEAALAAKPADVEALLALKLDG--GTVE 122

Query: 342 EKCKELISRIGENIKIRRFKLFKTNNNLI-SYLHDN-KIGVIVEYNGDNESAVKDVAMHI 399
           E   ELI++IGENI +RRF   + +  ++ SYLH   +IGV+V   G +E   KD+AMHI
Sbjct: 123 EARTELIAKIGENISLRRFARLEKDGGVVGSYLHGGGRIGVLVALEGGDEELAKDIAMHI 182

Query: 400 AAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 432
           AAM P  LS + +P +++EKE  +A  +A++ G
Sbjct: 183 AAMNPEYLSREDVPAEVVEKEREIAKEQAKEEG 215

Length = 290

>gnl|CDD|100106 cd01425, RPS2, Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome

 Score =  231 bits (592), Expect = 5e-71
 Identities = 97/214 (45%), Positives = 130/214 (60%), Gaps = 22/214 (10%)

Query: 8   MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 67
           +LEAGVH GH+TR WNPKM  YI+G RN IHII+LEKTL     A+ +I  +    G +L
Sbjct: 1   LLEAGVHLGHKTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKIL 60

Query: 68  FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 127
           FVGTK QA+  +   A R G  +++ RWLGG LTN+KTI+ SI+RLK+++          
Sbjct: 61  FVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLE---------- 110

Query: 128 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 187
                       + KL + +GGIK+M  +PD + ++D      A+ EA KL IP+I +VD
Sbjct: 111 ------------KEKLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVD 158

Query: 188 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFL 221
           TN  PD I+Y IP NDDS +SIAL    +  A L
Sbjct: 159 TNCDPDLIDYPIPANDDSIRSIALILWLLARAIL 192

It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane and subsequent signalling events, and has been linked to several diseases. Some evidence also suggests that the precursor of 67LR, 37LRP is also present in the nucleus in animals, where it appears associated with histones. Length = 193

>gnl|CDD|178850 PRK00083, frr, ribosome recycling factor; Reviewed

 Score =  228 bits (583), Expect = 7e-70
 Identities = 88/183 (48%), Positives = 132/183 (72%)

Query: 661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 720
           I++I K+ +++M   ++ LK  L K+RTGRAN  +LD I+V Y+   T L ++A+I++  
Sbjct: 2   INEILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPE 61

Query: 721 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 780
           + T+ IQP++K M   I+KAI  ++LGLNP+  G +I + IPPLT+ERR+E+VK +K   
Sbjct: 62  ARTLLIQPWDKSMLKAIEKAIRASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEA 121

Query: 781 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 840
           EE K++IR IRRD+N+ LKKL K+K +S D   RA+ +IQKLTDK+I +I++LL  KEKE
Sbjct: 122 EEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELLAAKEKE 181

Query: 841 ILT 843
           I+ 
Sbjct: 182 IME 184

Length = 185

>gnl|CDD|177007 CHL00067, rps2, ribosomal protein S2

 Score =  228 bits (583), Expect = 3e-69
 Identities = 97/223 (43%), Positives = 137/223 (61%), Gaps = 4/223 (1%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
            +I + EMLEAGVHFGHQTR WNPKM+ YI+  RN IHIINL +T     +A   ++   
Sbjct: 6   WNINLEEMLEAGVHFGHQTRKWNPKMAPYIYAERNGIHIINLVQTARFLSEACDLVFDAA 65

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
                 LFVGTK+QA  ++A+ A+RA   ++++RWLGG+LTN+ T KT +Q+L+++ +  
Sbjct: 66  SKGKKFLFVGTKKQAADLVASAAIRARCHYVNKRWLGGMLTNWSTTKTRLQKLRDLRMEE 125

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
             G   +L KKEA +  R+  +L + +GGIK M  +PD + IID      A+ E  KL I
Sbjct: 126 KTGLFNRLPKKEAAILKRQLSRLEKYLGGIKYMTKLPDIVIIIDQQEEYTALRECRKLGI 185

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDA 223
           P I ++DTN  PD  +  IP NDD+  SI L    I++    A
Sbjct: 186 PTISILDTNCDPDLADIPIPANDDAIASIKL----ILNKLTTA 224

Length = 230

>gnl|CDD|223342 COG0264, Tsf, Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]

 Score =  217 bits (555), Expect = 2e-64
 Identities = 93/216 (43%), Positives = 129/216 (59%), Gaps = 7/216 (3%)

Query: 223 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIY 282
           A  V ELR KT A +M+CKKAL EANG + KA E LR K   K    + R A +G+IA  
Sbjct: 6   AALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAK 65

Query: 283 ISE--KVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTV 340
           +    K   LVE+NCETDFVAKN EF + + KIAK   E  P ++++L          TV
Sbjct: 66  VDGDGKKAVLVEVNCETDFVAKNAEFQELANKIAKAALEKKPADVEELKAAFE-PGGKTV 124

Query: 341 DEKCKELISRIGENIKIRRFKLFKTNNNLI-SYLHDN-KIGVIVEYNGDNES--AVKDVA 396
           +E+   LI++IGENI +RRF + +  + ++ SYLH N +IGV+V   G        KD+A
Sbjct: 125 EEEIAALIAKIGENISLRRFAVLEAGDGVVGSYLHGNGRIGVLVALKGGAADEELAKDIA 184

Query: 397 MHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 432
           MHIAAM P  LS + +P +++EKE  + + + +  G
Sbjct: 185 MHIAAMNPQYLSREDVPAEVVEKEREIFLAQLKAEG 220

Length = 296

>gnl|CDD|223311 COG0233, Frr, Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

 Score =  209 bits (534), Expect = 7e-63
 Identities = 88/186 (47%), Positives = 136/186 (73%)

Query: 658 IMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANIT 717
           +M+I++I K+ ++KM   ++ LK  L K+RTGRAN  +LD I V+Y+   T L ++A+I+
Sbjct: 1   MMMINEILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASIS 60

Query: 718 LFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIK 777
           +  + T+ I+PF+K M   I+KAI  +NLGLNP   GN+I V +PPLT+ERR+E+VK+ K
Sbjct: 61  VPEARTLVIKPFDKSMVKAIEKAILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAK 120

Query: 778 NITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 837
              EE K+++R IRRD+N+ +KKL K+K +S D   +A+ +IQKLTD++I +I++LL +K
Sbjct: 121 KYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELLKDK 180

Query: 838 EKEILT 843
           EKEI+ 
Sbjct: 181 EKEIME 186

Length = 187

>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional

 Score =  203 bits (519), Expect = 4e-60
 Identities = 96/226 (42%), Positives = 137/226 (60%), Gaps = 10/226 (4%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           GEAL        +   +  +++EI  +V  G ++ IVIG GN+ RG+  +++ +  + AD
Sbjct: 9   GEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGV--ELKELSPTRAD 66

Query: 492 YMGMLATIINSLALFDILNKSG----IISHVMSAISIEKFLESYIPLNAIKYLEEGKVVI 547
            +GML T+IN+L L DI  KSG    I+S +++  S+E      I L    Y   G +VI
Sbjct: 67  QIGMLGTVINALYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIEL----YFRAGYIVI 122

Query: 548 FAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI 607
           FAGG  NPFFTTDT AALRA E+KA+I++KATKVDGIY+ DP K   A     +TF E I
Sbjct: 123 FAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAI 182

Query: 608 SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
              L++MD+ AFS C+   + I V +  + G L + ++G+N GTLV
Sbjct: 183 KMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLV 228

Length = 231

>gnl|CDD|216689 pfam01765, RRF, Ribosome recycling factor

 Score =  196 bits (501), Expect = 1e-58
 Identities = 82/164 (50%), Positives = 119/164 (72%)

Query: 679 LKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIK 738
           LK+ L K+RTGRAN  +LD I+V Y+   T L ++A+I++  + T+ I P++K +   I+
Sbjct: 2   LKKELSKIRTGRANPSLLDGIRVDYYGSPTPLNQLASISVPEARTLLITPWDKSLIKAIE 61

Query: 739 KAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENL 798
           KAI  ++LGLNP   G +I + IPPLT+ERR+E+VK  K + EE K++IR IRRD+N+ L
Sbjct: 62  KAILASDLGLNPQNDGQVIRIPIPPLTEERRKELVKQAKKLAEEAKVAIRNIRRDANDKL 121

Query: 799 KKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 842
           KKL K+K +S D   RA+ +IQKLTDK+I +I++LL  KEKEI+
Sbjct: 122 KKLEKDKEISEDEVKRAEKEIQKLTDKYIKKIDELLKKKEKEIM 165

The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth. Thus ribosomes are "recycled" and ready for another round of protein synthesis. Length = 165

>gnl|CDD|173021 PRK14556, pyrH, uridylate kinase; Provisional

 Score =  189 bits (480), Expect = 1e-54
 Identities = 103/223 (46%), Positives = 143/223 (64%), Gaps = 1/223 (0%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQN-IDRSTA 490
           GE+L     + IN    + II++I  + + G+ELA+V+GGGNI RG      N I R+TA
Sbjct: 24  GESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATA 83

Query: 491 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG 550
           D MGM+AT+IN+LAL D+L   G+ + V SA  ++  L+        + L +G+V+IFAG
Sbjct: 84  DSMGMIATMINALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAG 143

Query: 551 GIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 610
           G GNPF TTDTTA+LRA EI A+ +LKAT V+G+Y+ DPNK   A  + K+TF EV+SK+
Sbjct: 144 GTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKE 203

Query: 611 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
           L +MD  AF+ CRD  +PI VF + +  AL   +     GT V
Sbjct: 204 LNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWV 246

Length = 249

>gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF)

 Score =  181 bits (461), Expect = 9e-53
 Identities = 88/179 (49%), Positives = 128/179 (71%)

Query: 664 IKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHT 723
           I K  K+KM  +++ LKE L K+RTGRAN  +LD+I V+Y+   T L ++A+I++    T
Sbjct: 1   ILKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRT 60

Query: 724 ISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEET 783
           I I PF+K     I+KAI  ++LGLNP   G +I V++PPLT+ERR+E+VK  K I EE 
Sbjct: 61  IVINPFDKSAIKAIEKAILNSDLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEA 120

Query: 784 KISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 842
           K++IR IRRD+N+ +KKL K K +S D   +A+ D+QKLTD++I +I++LL +KEKE+L
Sbjct: 121 KVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELLKSKEKELL 179

Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species. Length = 179

>gnl|CDD|129587 TIGR00496, frr, ribosome recycling factor

 Score =  168 bits (427), Expect = 3e-48
 Identities = 82/175 (46%), Positives = 129/175 (73%)

Query: 669 KQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQP 728
           K++M  +I+ LK  L K+RTGRAN  +LD I V+Y+   T L ++A++T+ ++ T+ IQP
Sbjct: 1   KERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQP 60

Query: 729 FEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIR 788
           F+K   + I+KAI  ++LGLNP   G++I V+ PPLT+ERR+E+VK  K I E+ K+++R
Sbjct: 61  FDKSNINAIEKAIQRSDLGLNPNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVR 120

Query: 789 KIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILT 843
            +RRD+N+ +KKL K+K +S D E R Q +IQKLTD++I +I+++L +KEKE++ 
Sbjct: 121 NVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEILKDKEKELME 175

This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily [Protein synthesis, Translation factors]. Length = 176

>gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional

 Score =  163 bits (415), Expect = 1e-45
 Identities = 92/234 (39%), Positives = 141/234 (60%), Gaps = 2/234 (0%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           G AL      + NS  +++I +EI  IV  GIE++IVIGGGNI RG   +   IDR  AD
Sbjct: 13  GGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEAD 72

Query: 492 YMGMLATIINSLALFDIL-NKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG 550
            +G L TIINSL L  +L +K+     VM++I      E YI L A+ +L+ G +VIF G
Sbjct: 73  NIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGG 132

Query: 551 GIGNPFFTTDTTAALRAAEIKAEIILKATK-VDGIYNSDPNKCLSAIIYKKITFDEVISK 609
           G G PF TTD  +  RA E+ ++ IL A + VDG++ SDP    SA +Y+K+ +++V+ +
Sbjct: 133 GNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ 192

Query: 610 KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISD 663
            +++MD  A    RD  LP  VF+  + G ++R+  G++ GTL+ +   +++ +
Sbjct: 193 NIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDASLLVHE 246

Length = 247

>gnl|CDD|232832 TIGR00116, tsf, translation elongation factor Ts

 Score =  155 bits (393), Expect = 4e-42
 Identities = 82/214 (38%), Positives = 125/214 (58%), Gaps = 5/214 (2%)

Query: 223 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIY 282
           A+ V ELR +T A +M+CKKAL+EANG   KA + LR K   K    ++R A +GVI + 
Sbjct: 6   AQLVKELRERTGAGMMDCKKALVEANGDFEKAIKWLREKGIAKAAKKADRVAAEGVIVLK 65

Query: 283 ISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDE 342
                  +VE+N ETDFVAKN  F +F+ K+   +  N    L++L   +++N      E
Sbjct: 66  SDNHKAVIVEVNSETDFVAKNEGFKEFANKLLDELKANPITTLEELQKQELENK--EKVE 123

Query: 343 KCKELISRIGENIKIRRFKLFKTNNNLI-SYLHDN-KIGVIVEYNGD-NESAVKDVAMHI 399
               L ++IGENI +RR  + +  +N+I SYLH N +IGV+VE  G  +E   K +AMH+
Sbjct: 124 YLASLAAKIGENIVLRRVAVLEGQSNVIFSYLHANARIGVLVELKGKADEELAKHLAMHV 183

Query: 400 AAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGE 433
           AA KP  +  D + ++ ++KE  +   +A+  G+
Sbjct: 184 AANKPQFIDQDDVSQEWVKKERQIITDQAELSGK 217

Translational elongation factor Ts (EF-Ts) catalyzes the exchange of GTP for the GDP of the EF-Tu.GDP complex as part of the cycle of translation elongation. This protein is found in Bacteria, mitochondria, and chloroplasts [Protein synthesis, Translation factors]. Length = 291

>gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed

 Score =  121 bits (306), Expect = 2e-31
 Identities = 70/195 (35%), Positives = 90/195 (46%), Gaps = 56/195 (28%)

Query: 222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNAKDG 277
            AK V ELR KT A +M+CKKAL EANG + KA E LR     K  KK    + R A +G
Sbjct: 4   TAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKGLAKAAKK----AGRVAAEG 59

Query: 278 VIAIYI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP------------- 322
           ++  YI    ++G LVE+NCETDFVA+  EF + +K IA  I    P             
Sbjct: 60  LVGSYIHTGGRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVI 119

Query: 323 -----INLDQLNNLK----------------------------IKNNLLTVDEKCKELIS 349
                I   Q  N                              IK+   TV++  KE I+
Sbjct: 120 EKEKEIYRAQALNEGKPENIVEKIVEGRIEKFYKEVCLLEQPFIKDPSKTVEDLIKEAIA 179

Query: 350 RIGENIKIRRFKLFK 364
           +IGENI +RRF  F+
Sbjct: 180 KIGENIVVRRFARFE 194

Length = 198

>gnl|CDD|214362 CHL00098, tsf, elongation factor Ts

 Score =  108 bits (273), Expect = 5e-27
 Identities = 73/191 (38%), Positives = 91/191 (47%), Gaps = 49/191 (25%)

Query: 222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAI 281
            A+ V ELR KT A +M+CKKAL EANG   KA E LR K        S R   +G+I  
Sbjct: 1   SAELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQKGLASANKKSTRITTEGLIES 60

Query: 282 YI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLI----------TENTP------- 322
           YI    K+G LVEINCETDFVA+  EF K +K IA  I           E+ P       
Sbjct: 61  YIHTGGKLGVLVEINCETDFVARREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLE 120

Query: 323 ----INLDQLNN-----------------LK---------IKNNLLTVDEKCKELISRIG 352
                  D L N                 LK         I++  +TV+E  K+ I+++G
Sbjct: 121 KKIESEKDDLQNKPEEIKEKIVEGRIKKRLKELSLLDQPFIRDQSITVEELIKQNIAKLG 180

Query: 353 ENIKIRRFKLF 363
           ENI+IRRF  F
Sbjct: 181 ENIQIRRFARF 191

Length = 200

>gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

 Score = 93.3 bits (232), Expect = 3e-21
 Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 30/235 (12%)

Query: 448 IKNIISEISEIVSCGIELAIVIGGGN-----ICR-GISNKIQNIDRST---ADYMGMLAT 498
           ++N+   + ++ S G  + +V G G      +   G         R T    D +  +  
Sbjct: 15  LRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGE 74

Query: 499 IINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAI---------KYLEEGKVVIFA 549
            +++L +   L + GI +  +          +   +  I           LE G + I +
Sbjct: 75  GMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILS 134

Query: 550 GGIG--------NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKI 601
           G  G             +D+TAAL AA +KA+ ++  T VDG+Y +DP K   A +  ++
Sbjct: 135 GFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSEL 194

Query: 602 TFDEV---ISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
           T++E          ++   A        +P+R+ +    GAL  +      GTL+
Sbjct: 195 TYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI 248

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248

>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family

 Score = 91.3 bits (227), Expect = 1e-20
 Identities = 41/217 (18%), Positives = 87/217 (40%), Gaps = 27/217 (12%)

Query: 444 NSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL 503
           +   IK +  EI+++++ GI++ +V GGG     +               G    ++ + 
Sbjct: 14  DKDEIKRLAEEIAKLLALGIKVVVVSGGGGFTDKLLAAYGIEAGFVRHTAGATGLVLEAQ 73

Query: 504 ALFDILNKSG---------IISHVMSAISIEKFLESYIPLNAI-KYLEEGKVVIFAGGIG 553
              ++               ++ ++S   +       +   AI + LE G V +  G  G
Sbjct: 74  LAAELNRIVVSLGERLGARAVALLLSDGGLPAVRLDLVDTEAIKELLEAGVVPVITGFGG 133

Query: 554 N---------PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD 604
                        ++DT AAL A  + A+ ++  T VDG+Y +DP K   A +  ++++D
Sbjct: 134 ENDTGETTTLGRGSSDTLAALLAEALGADKLIILTDVDGVYTADPRKNPDAKLIPELSYD 193

Query: 605 EV--------ISKKLEIMDSTAFSFCRDQKLPIRVFS 633
           E         ++  +++    A    R   +P+ + +
Sbjct: 194 EAEELLAAGDVTGGMKVKHPAALKAARRGGIPVHIIN 230

This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230

>gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 32/218 (14%)

Query: 448 IKNIISEISEIVSCGIELAIVIGGGNICR---GISNKIQNIDRSTADYMGMLATIINSLA 504
             N++ +IS+    G ++A+V+GGG + R    ++ K+     +  D +G++AT +N+  
Sbjct: 23  YANVLRKISD----GHKVAVVVGGGRLAREYISVARKL-GASEAFLDEIGIMATRLNARL 77

Query: 505 LFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAA 564
           L   L  +                 SY    A++ +  GK+V+  GG   P  +TD  AA
Sbjct: 78  LIAALGDA-----------YPPVPTSYEE--ALEAMFTGKIVV-MGGT-EPGQSTDAVAA 122

Query: 565 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE----VISKKL-----EIMD 615
           L A  + A++++ AT VDG+Y+ DP K   A  + +++ DE    V          E  D
Sbjct: 123 LLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFD 182

Query: 616 STAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
             A        +   V        L+R ++G+  GT++
Sbjct: 183 PLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTII 220

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 221

>gnl|CDD|233711 TIGR02076, pyrH_arch, uridylate kinase, putative

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 31/218 (14%)

Query: 448 IKNIISEISEIVSCGIELAIVIGGGNICR---GISNKIQNIDRSTADYMGMLATIINSLA 504
             NI+ ++S+      ++ +V+GGG   R   G++ ++     +  D +G+ AT +N++ 
Sbjct: 22  FANILRKLSD----EHKVGVVVGGGKTARRYIGVAREL-GASETFLDEIGIDATRLNAML 76

Query: 505 LFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAA 564
           L   L          +               A++ +  GK+V+  GG  +P  TTD  AA
Sbjct: 77  LIAALGDDAYPKVPEN------------FEEALEAMSLGKIVV-MGGT-HPGHTTDAVAA 122

Query: 565 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE----VISKKL-----EIMD 615
           L A   KA++++ AT VDG+Y+ DP K   A  + K+T +E    V S  +     E++D
Sbjct: 123 LLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVD 182

Query: 616 STAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
             A       K+   V +      L++V++G++ GT++
Sbjct: 183 PLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 221

>gnl|CDD|189759 pfam00889, EF_TS, Elongation factor TS

 Score = 68.3 bits (168), Expect = 1e-13
 Identities = 23/41 (56%), Positives = 31/41 (75%)

Query: 274 AKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIA 314
           A +G++A+YI    G LVE+NCETDFVAKN +F + +K IA
Sbjct: 1   AAEGLVAVYIDGNKGVLVEVNCETDFVAKNEKFQELAKDIA 41

Length = 134

>gnl|CDD|189759 pfam00889, EF_TS, Elongation factor TS

 Score = 61.7 bits (151), Expect = 2e-11
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 10/71 (14%)

Query: 371 SYLHDNKIGVIVEYN------GDNES---AVKDVAMHIAAMKPIALSSDQIPKKIIEKEY 421
            Y+  NK GV+VE N        NE      KD+AMHIAAM P  LS D +P +++EKE 
Sbjct: 8   VYIDGNK-GVLVEVNCETDFVAKNEKFQELAKDIAMHIAAMNPQYLSRDDVPAEVLEKER 66

Query: 422 SLAVLKAQQLG 432
            +   +A++ G
Sbjct: 67  EILKAQAKEEG 77

Length = 134

>gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 22/129 (17%)

Query: 537 IKYLEEGKVVIFAG--GI-GNPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 587
           ++ LEEG VV+ AG  G+  +   TT      DTTA   AA +KA+     T VDG+Y +
Sbjct: 120 LEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTA 179

Query: 588 DPNKCLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 644
           DP     A     I++DE++   S   +++   +    +   +P+RV S           
Sbjct: 180 DPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFS-------- 231

Query: 645 EGKNEGTLV 653
             +N GTL+
Sbjct: 232 --ENPGTLI 238

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains. Length = 239

>gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

 Score = 60.6 bits (148), Expect = 4e-10
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 22/129 (17%)

Query: 537 IKYLEEGKVVIFAG--GI-GNPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 587
            + LEEG VVI AG  GI  +   TT      DT+A   AA + A+     T VDG+Y +
Sbjct: 120 RELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTA 179

Query: 588 DPNKCLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 644
           DP     A    +I++DE++   S   +++   +    +   +P+RV S           
Sbjct: 180 DPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFS-------- 231

Query: 645 EGKNEGTLV 653
             +  GTL+
Sbjct: 232 --EEPGTLI 238

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. Length = 239

>gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 13/80 (16%)

Query: 365 TNNNLI-SYLHDN-KIGVIVEYN--------GDN-ESAVKDVAMHIAAMKPIALSSDQIP 413
               L+ SY+H   +IGV+VE N         +  +   KD+AM IAA  P  +S + +P
Sbjct: 56  AAEGLVGSYIHTGGRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSREDVP 115

Query: 414 KKIIEKEYSLAVLKAQQLGE 433
            ++IEKE    + +AQ L E
Sbjct: 116 AEVIEKE--KEIYRAQALNE 133

Length = 198

>gnl|CDD|188101 TIGR01012, Sa_S2_E_A, ribosomal protein Sa(cytosolic)/S2(archaeal)

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 43/208 (20%), Positives = 78/208 (37%), Gaps = 51/208 (24%)

Query: 5   IREMLEAGVHFGHQTRFWNPKMSSYIFGHRNK-IHIINLEKTLYMYEKAIRYIYQLGFSK 63
           +   L AGVH G Q +     M  +I+  R+  +++++L KT      A +++ +     
Sbjct: 6   VDMYLAAGVHIGTQNK--TFDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVR--IEP 61

Query: 64  GTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNG 123
             +L V  +   +  +   A   G   I  R+  G  TN           K         
Sbjct: 62  QDILVVSARIYGQKPVLKFAKYTGARAIAGRFTPGTFTN--------PMQKS-------- 105

Query: 124 SIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPII 183
                        +R+                 P+ + + D      AV EA ++ IPI+
Sbjct: 106 -------------FRE-----------------PEVVVVTDPRADHQAVKEASEVGIPIV 135

Query: 184 GVVDTNHSPDGINYVIPGNDDSAKSIAL 211
            + DT++    ++ VIP N+   +S+AL
Sbjct: 136 ALCDTDNPLRYVDLVIPTNNKGRRSLAL 163

This model describes the ribosomal protein of the cytosol and of Archaea, homologous to S2 of bacteria. It is designated typically as Sa in eukaryotes and Sa or S2 in the archaea. TIGR01011 describes the related protein of organelles and bacteria [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 196

>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase

 Score = 55.8 bits (135), Expect = 5e-08
 Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 12/108 (11%)

Query: 538 KYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSD 588
             LEEG + + AG  G       TT      D TAAL AA +KA+     T VDGIY +D
Sbjct: 163 PLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTD 222

Query: 589 PNKCLSAIIYKKITFDE---VISKKLEIMDSTAFSFCRDQKLPIRVFS 633
           P     A    +I+++E   + S   +++           K+PI V S
Sbjct: 223 PRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKS 270

Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441

>gnl|CDD|235201 PRK04020, rps2P, 30S ribosomal protein S2; Provisional

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query: 157 PDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIAL 211
           PD + + D      AV EAI++ IP++ + DT++    ++ VIP N+   K++AL
Sbjct: 115 PDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKALAL 169

Length = 204

>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 540 LEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPN 590
           LEEG +V+ AG  G     + TT      D TAAL AA +KA+ +   T V G+Y +DP 
Sbjct: 126 LEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPR 185

Query: 591 KCLSAIIYKKITFDE---VISKKLEIMDSTAFSFCRDQKLPIRVFS 633
              +A    KI+++E   + +   +++            +PI V S
Sbjct: 186 VVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRS 231

This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401

>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism]

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 30/161 (18%)

Query: 537 IKYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 587
           ++ LEEGKV + AG  G   +   TT      D +AA  AA + A+ +   T VDG+Y +
Sbjct: 168 LRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTA 227

Query: 588 DPNKCLSAIIYKKITFDEVI------SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALK 641
           DP     A +  +I+++E +      +K L      A        +P+R+         K
Sbjct: 228 DPRIVPDARLLPEISYEEALELAYLGAKVLHP---RAVEPAMRSGIPLRI---------K 275

Query: 642 RVIEGKNEGTLVYEIYIM---IISDIKKNTKQKMLNTIKIL 679
                   GTL+         ++  I  +    ++      
Sbjct: 276 NTFNPDAPGTLITAETESDEPVVKGIALDDNVALITVSGPG 316

Length = 447

>gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

 Score = 50.5 bits (122), Expect = 7e-07
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 12/105 (11%)

Query: 541 EEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPNK 591
           E GKV +  G IG   +   TT      D +AA  AA + A+ +   T VDGIY +DP  
Sbjct: 111 EIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170

Query: 592 CLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFS 633
              A +  +I++DE +       +++   A    R   +PIRV +
Sbjct: 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKN 215

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria. Length = 227

>gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 18/126 (14%)

Query: 499 IINSLALFDILNKSGIISHVMSA-----ISIEKFLESYI----PLNAIKYLEEGKVVIFA 549
           II+++ L   L   G+ +  ++      ++ + +  + I    P   +  L+EG VV+ A
Sbjct: 78  IISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVA 137

Query: 550 GGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKK 600
           G  G   +   TT      DTTAA   A + AE +   T VDGI  +DP    +A I   
Sbjct: 138 GFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDV 197

Query: 601 ITFDEV 606
           ++++EV
Sbjct: 198 VSYNEV 203

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. Length = 244

>gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed

 Score = 50.6 bits (122), Expect = 2e-06
 Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 18/126 (14%)

Query: 499 IINSLALFDILNKSGIISHVMSA-----ISIEKFLESYI----PLNAIKYLEEGKVVIFA 549
           II+S+   ++LN++GI +  ++      I+ + F  + I    P   ++ LEEG VV+ A
Sbjct: 80  IISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVA 139

Query: 550 GGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKK 600
           G  G   N   TT      DTTAA     +KAE +   T VDGI  +DP     A +   
Sbjct: 140 GFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDV 199

Query: 601 ITFDEV 606
           ++++EV
Sbjct: 200 VSYNEV 205

Length = 403

>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed

 Score = 48.6 bits (117), Expect = 1e-05
 Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 38/136 (27%)

Query: 538 KYLEEGKVVIFAG--GI---GNPFFTT------DTTAALRAAEIKA---EIILKATKVDG 583
           + L+EG VV+ AG  G+   G    TT      DTTA   AA +KA   EI    T VDG
Sbjct: 123 EALDEGDVVVVAGFQGVDEDGE--ITTLGRGGSDTTAVALAAALKADECEIY---TDVDG 177

Query: 584 IYNSDPNKCLSAIIYKKITFDEVI------SKKLEIMDSTAFSFCRDQKLPIRVFSIIKS 637
           +Y +DP     A    KI+++E++      +K L      +  + +   +P+RV S    
Sbjct: 178 VYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHP---RSVEYAKKYNVPLRVRSSFSD 234

Query: 638 GALKRVIEGKNEGTLV 653
                     N GTL+
Sbjct: 235 ----------NPGTLI 240

Length = 404

>gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 9/78 (11%)

Query: 537 IKYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 587
           +K L  G VV+  G IG       TT      D +AAL A  + AE +   T V GIY +
Sbjct: 172 LKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTT 231

Query: 588 DPNKCLSAIIYKKITFDE 605
           DP  C +A   K+I+F E
Sbjct: 232 DPRICPAARAIKEISFAE 249

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Length = 292

>gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

 Score = 44.5 bits (106), Expect = 1e-04
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 9/74 (12%)

Query: 541 EEGKVVIFAGGIG-NPFFTT--------DTTAALRAAEIKAEIILKATKVDGIYNSDPNK 591
           E GKVV+  G I  N    T        D +AAL AA + AE +   T VDG+Y +DP K
Sbjct: 177 EHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRK 236

Query: 592 CLSAIIYKKITFDE 605
              A + K++++DE
Sbjct: 237 VPDARLLKELSYDE 250

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 293

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score = 43.8 bits (104), Expect = 4e-04
 Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 22/114 (19%)

Query: 538 KYLEEGKVVIFAG--GIGNPFF---TT------DTTAALRAAEIKAEIILKATKVDGIYN 586
           ++L+ GKVV+ AG  GI        TT      DT+A   AA + A+     T V G+  
Sbjct: 123 RHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLT 182

Query: 587 SDPNKCLSAIIYKKITFDEVISKKLE-------IMDSTAFSFCRDQKLPIRVFS 633
           +DP     A +  +I+ DE+    LE       ++   A    R+  +P+ V S
Sbjct: 183 TDPRLVPEAQLMDEISCDEM----LELASLGASVLHPRAVEIARNYGVPLVVRS 232

Length = 587

>gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated

 Score = 42.5 bits (101), Expect = 7e-04
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 537 IKYLEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 587
           +  L    VV+  G IG       TT      D +AAL A  + A  +   T V GIY +
Sbjct: 168 LLPLLAEGVVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTT 227

Query: 588 DPNKCLSAIIYKKITFDE 605
           DP    +A    +I+F+E
Sbjct: 228 DPRIVPAAKRIDEISFEE 245

Length = 448

>gnl|CDD|224524 COG1608, COG1608, Predicted archaeal kinase [General function prediction only]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 26/168 (15%)

Query: 507 DILNKSGI--ISHVMSAISIEKFLESYIPLNAIK-YLEEGKV------VIFAGGIGNPFF 557
           D L  +G+  +S V  + S       Y  L AIK  LE+G V      V+     G    
Sbjct: 88  DALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEII 147

Query: 558 TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEV----------- 606
           + D      A E+K + ++  T VDG+Y+ DP K   A +  +I                
Sbjct: 148 SGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTG 207

Query: 607 -ISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
            I+KKLE          R  K  + +F+  K   + R + G+N GT +
Sbjct: 208 GIAKKLE----ALLEIARYGK-EVYIFNGNKPENIYRALRGENVGTRI 250

Length = 252

>gnl|CDD|239788 cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 16/132 (12%)

Query: 539 YLEEGKVVIFAG-----------GIGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYN 586
           +L+ G+  + +G             G  P   TD  A L A  I A  ++     DG+Y 
Sbjct: 131 FLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYT 190

Query: 587 SDPNKCLSAIIYKKITFDEVISKKLE--IMDSTAFSFCRDQKL--PIRVFSIIKSGALKR 642
           +DP K   A    +I+  E++ K L+  +++       ++ +    +++ + +  G L R
Sbjct: 191 ADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTR 250

Query: 643 VIEGKNEGTLVY 654
            + G++ GT++ 
Sbjct: 251 ALRGEHVGTIIR 262

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 262

>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 11/57 (19%)

Query: 5  IREMLEAGVHFGHQTRFWNPKMSSYIFGHRNK--IHIINLEKTLYMYEK---AIRYI 56
          I++ML    H G  T+     M  Y++  R K  +HIINL KT   +EK   A R I
Sbjct: 15 IKKMLACKCHIG--TKNLENAMKKYVY-KRTKEGVHIINLAKT---WEKLKLAARVI 65

Length = 249

>gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 21/126 (16%)

Query: 540 LEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPN 590
           LE+GK+ +  G IG   +   TT      D +A +  A + A+ I     VDG+  +DP 
Sbjct: 181 LEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPR 240

Query: 591 KCLSAIIYKKITFDEVISKKL---EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK 647
               A    ++++ E +       +++         ++ +P+RV         K     +
Sbjct: 241 IVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRV---------KNTFNPE 291

Query: 648 NEGTLV 653
             GTL+
Sbjct: 292 APGTLI 297

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Length = 298

>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 22/126 (17%)

Query: 540 LEEGKVVIFAGGIG---NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNSDPN 590
           LE+ ++VI AG  G   N   TT      DTTA   A  + A+     T VDG+Y  DP 
Sbjct: 125 LEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPR 184

Query: 591 KCLSAIIYKKITF---DEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK 647
              +A     I F   + +  K  +++   +        +P+RV S  + G         
Sbjct: 185 VVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEVG--------- 235

Query: 648 NEGTLV 653
            EGTL+
Sbjct: 236 -EGTLI 240

Length = 392

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	844
COG0052	252	RpsB Ribosomal protein S2 [Translation, ribosomal	100.0
PRK12311	326	rpsB 30S ribosomal protein S2/unknown domain fusio	100.0
TIGR01011	225	rpsB_bact ribosomal protein S2, bacterial type. TI	100.0
PRK05299	258	rpsB 30S ribosomal protein S2; Provisional	100.0
CHL00067	230	rps2 ribosomal protein S2	100.0
PF00318	211	Ribosomal_S2: Ribosomal protein S2; InterPro: IPR0	100.0
COG0264	296	Tsf Translation elongation factor Ts [Translation,	100.0
cd01425	193	RPS2 Ribosomal protein S2 (RPS2), involved in form	100.0
COG0233	187	Frr Ribosome recycling factor [Translation, riboso	100.0
TIGR01012	196	Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archa	100.0
PRK04020	204	rps2P 30S ribosomal protein S2; Provisional	100.0
PRK09377	290	tsf elongation factor Ts; Provisional	100.0
TIGR00116	290	tsf translation elongation factor Ts. This protein	100.0
PRK00083	185	frr ribosome recycling factor; Reviewed	100.0
KOG0832|consensus	251		100.0
PTZ00254	249	40S ribosomal protein SA; Provisional	100.0
TIGR00496	176	frr ribosome recycling factor. This model finds on	100.0
cd00520	179	RRF Ribosome recycling factor (RRF). Ribosome recy	100.0
PF01765	165	RRF: Ribosome recycling factor; InterPro: IPR02358	100.0
PRK12332	198	tsf elongation factor Ts; Reviewed	100.0
CHL00098	200	tsf elongation factor Ts	100.0
KOG4759|consensus	263		100.0
KOG1071|consensus	340		100.0
COG0528	238	PyrH Uridylate kinase [Nucleotide transport and me	100.0
PRK14556	249	pyrH uridylate kinase; Provisional	100.0
PRK14558	231	pyrH uridylate kinase; Provisional	100.0
PRK00358	231	pyrH uridylate kinase; Provisional	100.0
PF00889	221	EF_TS: Elongation factor TS; InterPro: IPR014039 T	100.0
cd04239	229	AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik	100.0
cd04254	231	AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi	100.0
TIGR02075	233	pyrH_bact uridylate kinase. This protein, also cal	100.0
PRK14557	247	pyrH uridylate kinase; Provisional	100.0
COG0263	369	ProB Glutamate 5-kinase [Amino acid transport and	99.97
cd04256	284	AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase	99.96
PTZ00489	264	glutamate 5-kinase; Provisional	99.96
PRK12314	266	gamma-glutamyl kinase; Provisional	99.96
cd04253	221	AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP	99.96
PRK13402	368	gamma-glutamyl kinase; Provisional	99.96
TIGR02076	221	pyrH_arch uridylate kinase, putative. This family	99.95
cd04242	251	AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K	99.95
PRK05429	372	gamma-glutamyl kinase; Provisional	99.95
TIGR01027	363	proB glutamate 5-kinase. Bacterial ProB proteins h	99.95
cd04241	252	AAK_FomA-like AAK_FomA-like: This CD includes a fo	99.94
cd02115	248	AAK Amino Acid Kinases (AAK) superfamily, catalyti	99.94
cd04261	239	AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina	99.94
cd04246	239	AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina	99.94
COG1608	252	Predicted archaeal kinase [General function predic	99.94
KOG1154|consensus	285		99.93
cd04255	262	AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th	99.93
cd04235	308	AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot	99.93
TIGR00746	310	arcC carbamate kinase. The seed alignment for this	99.93
COG0548	265	ArgB Acetylglutamate kinase [Amino acid transport	99.92
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	99.92
PRK08841	392	aspartate kinase; Validated	99.92
cd04234	227	AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK)	99.92
PRK14058	268	acetylglutamate/acetylaminoadipate kinase; Provisi	99.92
PRK06635	404	aspartate kinase; Reviewed	99.92
cd04260	244	AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase	99.92
TIGR01092	715	P5CS delta l-pyrroline-5-carboxylate synthetase. T	99.92
KOG0830|consensus	254		99.92
CHL00202	284	argB acetylglutamate kinase; Provisional	99.91
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	99.91
PRK12454	313	carbamate kinase-like carbamoyl phosphate syntheta	99.91
PLN02512	309	acetylglutamate kinase	99.91
PRK12353	314	putative amino acid kinase; Reviewed	99.91
PLN02418	718	delta-1-pyrroline-5-carboxylate synthase	99.91
PRK12686	312	carbamate kinase; Reviewed	99.9
cd04250	279	AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase	99.9
PRK00942	283	acetylglutamate kinase; Provisional	99.89
PRK08210	403	aspartate kinase I; Reviewed	99.89
PRK07431	587	aspartate kinase; Provisional	99.89
cd04244	298	AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina	99.89
cd04251	257	AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina	99.88
cd04238	256	AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate	99.88
cd04249	252	AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina	99.88
cd04259	295	AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super	99.87
PRK12352	316	putative carbamate kinase; Reviewed	99.87
PRK09411	297	carbamate kinase; Reviewed	99.87
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	99.87
PRK12354	307	carbamate kinase; Reviewed	99.87
cd04245	288	AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki	99.87
cd04257	294	AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa	99.86
PF00696	242	AA_kinase: Amino acid kinase family Match to Gluta	99.86
PRK08373	341	aspartate kinase; Validated	99.86
PRK06291	465	aspartate kinase; Provisional	99.86
cd04243	293	AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina	99.85
TIGR00761	231	argB acetylglutamate kinase. This model describes	99.84
cd04240	203	AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin	99.84
PLN02551	521	aspartokinase	99.84
cd04258	292	AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki	99.84
cd04237	280	AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG)	99.83
cd04247	306	AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa	99.83
PRK09034	454	aspartate kinase; Reviewed	99.83
COG0549	312	ArcC Carbamate kinase [Amino acid transport and me	99.83
TIGR02078	327	AspKin_pair Pyrococcus aspartate kinase subunit, p	99.83
PRK09084	448	aspartate kinase III; Validated	99.83
PRK05279	441	N-acetylglutamate synthase; Validated	99.82
cd04252	248	AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam	99.81
TIGR01890	429	N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi	99.81
cd04236	271	AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA	99.8
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	99.8
PRK05925	440	aspartate kinase; Provisional	99.8
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	99.79
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	99.76
PRK09181	475	aspartate kinase; Validated	99.75
cd04248	304	AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S	99.71
PRK04531	398	acetylglutamate kinase; Provisional	99.66
PLN02825	515	amino-acid N-acetyltransferase	99.63
KOG0456|consensus	559		99.62
COG2054	212	Uncharacterized archaeal kinase related to asparto	99.59
COG0264	296	Tsf Translation elongation factor Ts [Translation,	99.51
TIGR00116	290	tsf translation elongation factor Ts. This protein	99.51
PF00889	221	EF_TS: Elongation factor TS; InterPro: IPR014039 T	99.49
PRK09377	290	tsf elongation factor Ts; Provisional	99.47
CHL00098	200	tsf elongation factor Ts	99.04
PRK12332	198	tsf elongation factor Ts; Reviewed	98.94
KOG2436|consensus	520		98.12
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	97.41
KOG1071|consensus	340		96.83
PRK05441	299	murQ N-acetylmuramic acid-6-phosphate etherase; Re	96.79
PRK12570	296	N-acetylmuramic acid-6-phosphate etherase; Reviewe	96.34
cd05007	257	SIS_Etherase N-acetylmuramic acid 6-phosphate ethe	96.17
PRK06369	115	nac nascent polypeptide-associated complex protein	95.84
TIGR00274	291	N-acetylmuramic acid 6-phosphate etherase. This pr	95.32
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	94.84
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	94.46
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	94.11
COG1308	122	EGD2 Transcription factor homologous to NACalpha-B	85.97
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	84.73
COG0279	176	GmhA Phosphoheptose isomerase [Carbohydrate transp	82.04
PF13580	138	SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_	80.54

>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.4e-74  Score=579.92  Aligned_cols=224  Identities=50%  Similarity=0.842  Sum_probs=221.2

Q ss_pred             CCCHHHHHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHH
Q psy3759           2 SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAN   81 (844)
Q Consensus         2 ~~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~   81 (844)
                      .+++++||+||+||||++++|||+|+||||+.|||+|||||.||+.+|+.|++|++.++.+||+|||||||.+++++|++
T Consensus         3 ~vsm~~lLeAGvHfGhqtr~wnpkm~~fIf~~RngihIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~   82 (252)
T COG0052           3 VVSMKQLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKE   82 (252)
T ss_pred             cCCHHHHHHcCccccccccccCCcccccceeecCCcEEEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEE
Q psy3759          82 EAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIF  161 (844)
Q Consensus        82 ~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vi  161 (844)
                      +|++||++||++||+|||||||+||+++|++|+.++.+.+++ |+.|+|||.+.+.|+.+||+++|||||+|+++||++|
T Consensus        83 ~A~r~g~~yV~~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~-~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~  161 (252)
T COG0052          83 FAERTGAYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDG-FDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLF  161 (252)
T ss_pred             HHHHhCCceecCcccCccccCchhHHHHHHHHHHHHHHhhcc-cccccHHHHHHHHHHHHHHHHhhcchhhccCCCCEEE
Confidence            999999999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             EeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchhh
Q psy3759         162 IIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV  226 (844)
Q Consensus       162 i~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v  226 (844)
                      |+||..|++||.||+++||||||+|||||||+.||||||||||+++|+.|++++|++||++|+.-
T Consensus       162 ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP~Ndda~rsi~Li~~~lA~ai~e~r~~  226 (252)
T COG0052         162 VIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGRGG  226 (252)
T ss_pred             EeCCcHhHHHHHHHHHcCCCEEEEecCCCCCccCceeecCCChHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999863

>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional

Probab=100.00  E-value=9.1e-68  Score=566.04  Aligned_cols=221  Identities=48%  Similarity=0.829  Sum_probs=218.6

Q ss_pred             HHHHHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHH
Q psy3759           5 IREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAV   84 (844)
Q Consensus         5 ~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~   84 (844)
                      +++||++|+||||++++|||+|+|||||.|||+|||||++|+.+|++||+||.+++.+||+||||||+++++.+|+++|+
T Consensus         1 ~~~Ll~agvH~Gh~~~~wnpkM~~yIyg~R~gihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A~   80 (326)
T PRK12311          1 MRQLLEAGVHFGHQSHRWNPKMAPYIFGTRNNIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAAK   80 (326)
T ss_pred             ChhHHhCCeecccCCCCCCCcccCceecccCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeC
Q psy3759          85 RAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID  164 (844)
Q Consensus        85 ~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~  164 (844)
                      +||++||++||+|||||||+|++++|++|++++++..++.|+.|+|||.+.+.|+.+||+++|+|+++|+++||+|||+|
T Consensus        81 ~~g~~yV~~RWlgG~LTN~~ti~~si~~l~~l~~~~~~~~~~~~~kke~~~~~r~~~kl~k~l~Gi~~m~~~Pd~viv~d  160 (326)
T PRK12311         81 RSAQYFVNSRWLGGTLTNWKTISGSIQRLRKLDEVLSSGEANGYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVID  160 (326)
T ss_pred             HhCCeeeCCeecCcccCCHHHHHHHHHHHHHHHHHhhcCccccCCHHHHHHHHHHHHHHHHhccchhhcccCCCEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchh
Q psy3759         165 VGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT  225 (844)
Q Consensus       165 ~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~  225 (844)
                      |..|++||+||.++||||||||||||||++|||||||||||++|++|++++|+++|++|+.
T Consensus       161 ~~~e~~AI~EA~kl~IPvIaivDTn~dp~~IdypIP~NDds~~si~li~~~la~ai~~g~~  221 (326)
T PRK12311        161 TNKEDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGRAIALYCDLIARAAIDGIS  221 (326)
T ss_pred             CccchHHHHHHHHcCCCEEEEeeCCCCccccceeecCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999985

>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type

Probab=100.00  E-value=2.7e-67  Score=542.23  Aligned_cols=222  Identities=51%  Similarity=0.895  Sum_probs=219.9

Q ss_pred             CCHHHHHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHH
Q psy3759           3 ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANE   82 (844)
Q Consensus         3 ~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~   82 (844)
                      +++++|+++|+|+||++++|||+|+|||||.|+|+|||||++|+.+|++||++++.+++++|+||||||+++++++|+++
T Consensus         2 ~~~~~ll~ag~H~Gh~~~~wnp~m~~yIyg~r~g~~IIdL~~T~~~L~~A~~~i~~~~~~~g~iLfV~tk~~~~~~v~~~   81 (225)
T TIGR01011         2 VSMKDLLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKEE   81 (225)
T ss_pred             cCHHHHHHcCcccccccCcCCcccccceeeeeCCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEE
Q psy3759          83 AVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFI  162 (844)
Q Consensus        83 a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii  162 (844)
                      |+++|++||++||+||+||||+++++++++|++++++.+++.|+.++|||.+.+.|+++||+++|+|+++|+++||+||+
T Consensus        82 a~~~~~~yv~~rWlgG~LTN~~~i~~~i~~l~~l~~~~~~~~f~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~vii  161 (225)
T TIGR01011        82 AERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDDLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLFV  161 (225)
T ss_pred             HHHhCCcccCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHhccCccccccCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcch
Q psy3759         163 IDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK  224 (844)
Q Consensus       163 ~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~  224 (844)
                      +||.+|++|++||.++||||||||||||||++|||||||||||++|++|++++|++||.+|+
T Consensus       162 ~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~g~  223 (225)
T TIGR01011       162 IDPVKEKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGK  223 (225)
T ss_pred             eCCCccHHHHHHHHHcCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999996

TIGR01012 describes the archaeal and cytosolic forms.

>PRK05299 rpsB 30S ribosomal protein S2; Provisional

Probab=100.00  E-value=6e-67  Score=548.29  Aligned_cols=223  Identities=53%  Similarity=0.946  Sum_probs=220.9

Q ss_pred             CCHHHHHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHH
Q psy3759           3 ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANE   82 (844)
Q Consensus         3 ~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~   82 (844)
                      +++++|+++|+||||++++|||+|+|||||.|||+|||||++|+.+|++||+||+.++.++|+||||||+++++++|+++
T Consensus         4 ~~i~~Ll~agvH~Gh~~~~wnp~m~~yIyg~r~gi~IIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~V~~~   83 (258)
T PRK05299          4 VSMKQLLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAIAEE   83 (258)
T ss_pred             CCHHHHHhcCcccccccCcCCCccccceecccCCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEECcHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEE
Q psy3759          83 AVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFI  162 (844)
Q Consensus        83 a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii  162 (844)
                      |++||++||++||+||+||||+++++++++|++++++..++.|+.++|||.+.+.|+++||+++|+|+++|+++||+|||
T Consensus        84 A~~~~~~yv~~rWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~iii  163 (258)
T PRK05299         84 AERCGMPYVNHRWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLTRELEKLEKSLGGIKDMGGLPDALFV  163 (258)
T ss_pred             HHHhCCeeeCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHhccCccccccCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchh
Q psy3759         163 IDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT  225 (844)
Q Consensus       163 ~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~  225 (844)
                      +||..|++|++||.++||||||||||||||++|||||||||||++|++|++++|++||++|+.
T Consensus       164 ~d~~~~~~ai~Ea~kl~IPiIaivDTn~dp~~IdypIP~Ndds~~si~li~~~l~~ai~~g~~  226 (258)
T PRK05299        164 VDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGRQ  226 (258)
T ss_pred             eCCCccHHHHHHHHHhCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999986

>CHL00067 rps2 ribosomal protein S2

Probab=100.00  E-value=5.9e-65  Score=526.48  Aligned_cols=223  Identities=43%  Similarity=0.724  Sum_probs=220.3

Q ss_pred             CCCHHHHHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHH
Q psy3759           2 SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAN   81 (844)
Q Consensus         2 ~~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~   81 (844)
                      .+++++|+++|+|+||++++|||+|+|||||.|||+|||||++|+.+|++|+++++++++++|+||||||+++++++|++
T Consensus         7 ~~~i~~Ll~a~~h~Gh~~~~~np~m~~yIyg~r~g~~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~t~~~~~~~v~~   86 (230)
T CHL00067          7 NINLEEMLEAGVHFGHQTRKWNPKMAPYIYAERNGIHIINLVQTARFLSEACDLVFDAASKGKKFLFVGTKKQAADLVAS   86 (230)
T ss_pred             ccCHHHHHhcCeEeccCcCcCCCchhhhhhcccCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEE
Q psy3759          82 EAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIF  161 (844)
Q Consensus        82 ~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vi  161 (844)
                      +|+++|++||++||+||+||||.++++++++|+++++..+.+.|.+++|||.+.+.|++.||+++|+|+++|+++||+||
T Consensus        87 ~a~~~~~~yv~~rWigG~LTN~~~i~~~i~~~~~l~~~~~~~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~m~~~P~~ii  166 (230)
T CHL00067         87 AAIRARCHYVNKRWLGGMLTNWSTTKTRLQKLRDLRMEEKTGLFNRLPKKEAAILKRQLSRLEKYLGGIKYMTKLPDIVI  166 (230)
T ss_pred             HHHHhCCcCccCcccCCcccCHHHHHHHHHHHHHHHHHhhccchhcccHhHHHHHHHHHHHHHHhhccccccccCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcch
Q psy3759         162 IIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK  224 (844)
Q Consensus       162 i~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~  224 (844)
                      ++||.+|++|++||.++||||||||||||||++|||||||||||++|++|++++|++||.+|+
T Consensus       167 v~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~G~  229 (230)
T CHL00067        167 IIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIPIPANDDAIASIKLILNKLTTAICEGR  229 (230)
T ss_pred             EeCCcccHHHHHHHHHcCCCEEEEEeCCCCccccceeeecCCchHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999986

>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.5e-59  Score=483.00  Aligned_cols=211  Identities=49%  Similarity=0.796  Sum_probs=202.7

Q ss_pred             HHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcC
Q psy3759           8 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG   87 (844)
Q Consensus         8 ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~   87 (844)
                      |+++|+|+||++++|||+|.|||||.|+|+|||||++|+.+|++|+++|++++.++|+||||||++++..+|+++|+++|
T Consensus         1 Ll~a~~HlG~~~~~~n~~m~~yI~g~r~g~~IidL~kT~~~L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~~~   80 (211)
T PF00318_consen    1 LLKAGVHLGHKKSRWNPKMKPYIYGKRNGIHIIDLEKTLEQLRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKRTG   80 (211)
T ss_dssp             HHHHTTTSCBSSSSSSGGGGGGEEEEETTEEEETHHHHHHHHHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHHHT
T ss_pred             CcccceecCCCcCCCCCCcccceecccCceEEEEHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHhC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCC
Q psy3759          88 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY  167 (844)
Q Consensus        88 ~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~  167 (844)
                      ++|+++||+||+||||+++++++.+|++++++..      ++||+.+.+.++++|++++|+|+++|+++||+||++||.+
T Consensus        81 ~~yi~~rWi~G~LTN~~~i~~~i~~l~~l~~~~~------~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~  154 (211)
T PF00318_consen   81 SFYINERWIGGTLTNWKTIKKSIKKLKKLEKLFK------LTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNK  154 (211)
T ss_dssp             CEEEESS-STTTTTTTTHCHHHHHHHHHHHHHTT------SSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTT
T ss_pred             CCccCceecCcccCcHHHHHHHHHHHHHHHHhhh------ccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccc
Confidence            9999999999999999999999999999886554      8999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcch
Q psy3759         168 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK  224 (844)
Q Consensus       168 ~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~  224 (844)
                      |++|++||.++||||||||||||||+.+||||||||||..|++|++++|++||++|+
T Consensus       155 ~~~~i~Ea~~l~IP~i~i~Dtn~~~~~i~ypIp~N~~s~~si~~i~~~l~~ai~~g~  211 (211)
T PF00318_consen  155 NKNAIREANKLNIPTIAIVDTNCNPSLIDYPIPANDDSIKSIYLILNLLAKAILEGK  211 (211)
T ss_dssp             THHHHHHHHHTTS-EEEEESTTS-GTTSSEEEES-SSSHHHHHHHHHHHHHHHHHTC
T ss_pred             cchhHHHHHhcCceEEEeecCCCCccccceEeecCCccHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....

>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.7e-57  Score=464.49  Aligned_cols=219  Identities=43%  Similarity=0.621  Sum_probs=201.8

Q ss_pred             hcchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHHhhhhhhhcccccCCCCceEEEEe--CCEEEEEEEecCCc
Q psy3759         221 LDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETD  298 (844)
Q Consensus       221 ~~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~kg~~~a~kk~~r~~~eG~i~~y~~--~~~gviveln~etd  298 (844)
                      ....++|+||++||+|||||||||+|++||+|+|++|||++|+++|.||++|+|+||+|.+|++  ++.|||||+|||||
T Consensus         4 ita~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vEvN~ETD   83 (296)
T COG0264           4 ITAALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVEVNCETD   83 (296)
T ss_pred             ccHHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHHhchHhhhhhcCcchhcceEEEEEcCCCcEEEEEEEecccc
Confidence            4567899999999999999999999999999999999999999999999999999999999996  66999999999999


Q ss_pred             hhccchHHHHHHHHHHHHHHhcCCCChhhhccccccCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeCC-ceeeeccC-C
Q psy3759         299 FVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN-NLISYLHD-N  376 (844)
Q Consensus       299 fvA~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~v~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g~-~i~~Y~H~-~  376 (844)
                      |||||+.|++|+++|+.++++..|.+++++...++.+ ++||++++.+.++++||||++|||.+++.+. .+++|+|+ |
T Consensus        84 FVAkN~~F~~l~~~ia~~~l~~~~~~ve~l~~~~~~~-~~tv~e~~~~~~AkIGENi~lRR~~~~~~~~~~v~~Y~H~~g  162 (296)
T COG0264          84 FVAKNAEFQELANKIAKAALEKKPADVEELKAAFEPG-GKTVEEEIAALIAKIGENISLRRFAVLEAGDGVVGSYLHGNG  162 (296)
T ss_pred             ceeCChhHHHHHHHHHHHHHHhCcccHHHHHhhhccc-CccHHHHHHHHHHHhccceeEEEEEEeecCcccEEEEEeCCC
Confidence            9999999999999999999999999999999888865 6799999999999999999999999999877 59999999 8


Q ss_pred             ceEEEEEecC--CchhHHHHHHhhhcccCCcccCccccchHHHhhhhhHHHHHHHhhhhhhhcCCCCcccch
Q psy3759         377 KIGVIVEYNG--DNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSS  446 (844)
Q Consensus       377 ~~g~lv~~~~--~~~~~~~~iamhi~a~~p~~~~~~~vp~~~i~~e~~~iv~k~~~~~~~l~~g~~~~id~~  446 (844)
                      ||||||.+++  ..+++++++|||||||+|+|+++++||++++++||+++..++.      ..|+|..+-++
T Consensus       163 riGVlv~~~~~~~~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~Er~i~~~~~~------~~gKP~~i~eK  228 (296)
T COG0264         163 RIGVLVALKGGAADEELAKDIAMHIAAMNPQYLSREDVPAEVVEKEREIFLAQLK------AEGKPENIVEK  228 (296)
T ss_pred             cEEEEEEEeccchHHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHHH------hcCChHHHHHH
Confidence            9999999998  5668999999999999999999999999999999998777542      23677654433

>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome

Probab=100.00  E-value=6.4e-57  Score=457.48  Aligned_cols=193  Identities=50%  Similarity=0.818  Sum_probs=186.9

Q ss_pred             HHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcC
Q psy3759           8 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG   87 (844)
Q Consensus         8 ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~   87 (844)
                      |+++|+|+||++++|||+|+|||||.|||+|||||++|+.+|++|++++++++.++|+||||||+++++++|+++|+++|
T Consensus         1 ll~ag~h~G~~~~~wnp~m~~yiyg~r~~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~   80 (193)
T cd01425           1 LLEAGVHLGHKTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTG   80 (193)
T ss_pred             CCccceEeCCCcCCCCccchhheecccCCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCC
Q psy3759          88 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY  167 (844)
Q Consensus        88 ~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~  167 (844)
                      ++|+++||+||+||||.++++++.++++++.                      .|++++|+|+++|.++||+||++||..
T Consensus        81 ~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~----------------------~~~~k~~~g~~~~~~~Pdlviv~~~~~  138 (193)
T cd01425          81 SFYVNGRWLGGTLTNWKTIRKSIKRLKKLEK----------------------EKLEKNLGGIKDMFRLPDLVIVLDPRK  138 (193)
T ss_pred             CeeecCeecCCcCCCHHHHHHHHHHHHHHHH----------------------HHHHHhcccccccccCCCEEEEeCCcc
Confidence            9999999999999999999999999877642                      678999999999999999999999999


Q ss_pred             cchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhc
Q psy3759         168 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD  222 (844)
Q Consensus       168 ~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~  222 (844)
                      |++|++||.++||||||+|||||||++|||||||||||++|++|++++|++|+++
T Consensus       139 ~~~ai~Ea~~l~IP~I~i~Dtn~~~~~i~ypIP~Nd~s~~si~li~~~l~~ai~~  193 (193)
T cd01425         139 EHQAIREASKLGIPVIAIVDTNCDPDLIDYPIPANDDSIRSIALILWLLARAILE  193 (193)
T ss_pred             chHHHHHHHHcCCCEEEEecCCCCCccceEEeecCCchHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999863

It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an

>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6e-56  Score=429.04  Aligned_cols=184  Identities=47%  Similarity=0.738  Sum_probs=181.7

Q ss_pred             hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCcccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy3759         661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA  740 (844)
Q Consensus       661 ~~~i~~~~~~~m~~~v~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~l~~~A~i~~~~~~~l~i~~~d~~~~~~i~kA  740 (844)
                      .++++++++++|++++++|+++|+++||||+||++||+|.|+|||.++||+|+|+||+|++|+|.|+|||++++++|++|
T Consensus         4 ~~~i~~~~e~kM~k~~e~l~~~l~~iRTGRanp~lld~i~VeyYG~~tPl~qvAsIsvpe~r~l~I~p~Dks~~~~Ieka   83 (187)
T COG0233           4 INEILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASISVPEARTLVIKPFDKSMVKAIEKA   83 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHhcceeeeecCCCCcHHHHhhccCCCcceEEeecCccchHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHH
Q psy3759         741 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ  820 (844)
Q Consensus       741 i~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq  820 (844)
                      |+.|||||||.+||+.|||++|+||+|+|++|+|.+|+++|++|++||||||++++++||+.|++.||||+.++++++||
T Consensus        84 I~~snLglnP~~dG~~IRv~~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~~isEDe~k~~e~~iQ  163 (187)
T COG0233          84 ILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQ  163 (187)
T ss_pred             HHHcCCCCCcCcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcC
Q psy3759         821 KLTDKFILEINQLLINKEKEILTL  844 (844)
Q Consensus       821 ~l~~~~~~~id~~~~~kekel~~~  844 (844)
                      ++||+|+++||++++.||||||+|
T Consensus       164 KlTd~yi~~iD~~~~~KEkEim~v  187 (187)
T COG0233         164 KLTDEYIKKIDELLKDKEKEIMEV  187 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999986

>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal)

Probab=100.00  E-value=3.7e-55  Score=436.79  Aligned_cols=174  Identities=24%  Similarity=0.355  Sum_probs=166.1

Q ss_pred             CCCHHHHHhcCcccccccCCCCCCCcCcccccc-CCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHH
Q psy3759           2 SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIA   80 (844)
Q Consensus         2 ~~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r-~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~   80 (844)
                      .+++++|++||+||||+  .|||+|+|||||.| ||+|||||++|+.+|++|++++.+++  +|+||||||+++++.+|+
T Consensus         3 ~~~i~~ll~agvH~Gh~--~~np~M~~yI~~~r~~gi~IIdL~kT~~~L~~A~~~i~~i~--~~~ILfVgtk~~~~~~V~   78 (196)
T TIGR01012         3 LVPVDKYLAAGVHIGTQ--NKTKDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIE--PEDILVVSARIYGQKPVL   78 (196)
T ss_pred             cccHHHHHhCCeecCCC--cCCCCCccceeeecCCCCEEEcHHHHHHHHHHHHHHHHHhh--CCeEEEEecCHHHHHHHH
Confidence            36899999999999998  59999999999999 79999999999999999999999997  999999999999999999


Q ss_pred             HHHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEE
Q psy3759          81 NEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAI  160 (844)
Q Consensus        81 ~~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~v  160 (844)
                      ++|++||++|+++||+||+||||.+-                 .|                             ++||+|
T Consensus        79 ~~A~~~g~~~v~~RWlgGtLTN~~~~-----------------~~-----------------------------~~Pdll  112 (196)
T TIGR01012        79 KFAKVTGARAIAGRFTPGTFTNPMQK-----------------AF-----------------------------REPEVV  112 (196)
T ss_pred             HHHHHhCCceECCeeCCCCCCCcccc-----------------cc-----------------------------CCCCEE
Confidence            99999999999999999999999730                 01                             489999


Q ss_pred             EEeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchh
Q psy3759         161 FIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT  225 (844)
Q Consensus       161 ii~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~  225 (844)
                      |++||..|++||+||.++||||||||||||||++|||||||||||++|++|++++|+++|++|+.
T Consensus       113 iv~dp~~~~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~~Si~li~~lla~ail~~~g  177 (196)
T TIGR01012       113 VVTDPRADHQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGRHSLALIYWLLAREILRMRG  177 (196)
T ss_pred             EEECCccccHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999985

TIGR01011 describes the related protein of organelles and bacteria.

>PRK04020 rps2P 30S ribosomal protein S2; Provisional

Probab=100.00  E-value=2.2e-54  Score=433.76  Aligned_cols=173  Identities=26%  Similarity=0.412  Sum_probs=164.5

Q ss_pred             CCHHHHHhcCcccccccCCCCCCCcCcccccc-CCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHH
Q psy3759           3 ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAN   81 (844)
Q Consensus         3 ~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r-~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~   81 (844)
                      +++++|+++|+||||++  |||+|+|||||.| ||+|||||++|+.+|++|+++|..+  ++|+||||||+++++.+|++
T Consensus        10 v~i~~ll~ag~H~Gh~~--~np~Mk~yIyg~r~~gi~IIdL~kT~~~L~~A~~~i~~~--~~~~ILfVgTk~~~~~~v~k   85 (204)
T PRK04020         10 VPLEEYLAAGVHIGTQQ--KTKDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFLSRY--EPEKILVVSSRQYGQKPVQK   85 (204)
T ss_pred             eeHHHHHhCCeEcCCCc--CCCCCcccEeeecCCCCEEEcHHHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHH
Confidence            68999999999999995  7999999999999 6999999999999999999999997  69999999999999999999


Q ss_pred             HHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEE
Q psy3759          82 EAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIF  161 (844)
Q Consensus        82 ~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vi  161 (844)
                      +|+++|++|+++||+||+||||+.-                                      ++        .+||+||
T Consensus        86 ~A~~~g~~~v~~RWlgG~LTN~~~~--------------------------------------~~--------~~Pdlii  119 (204)
T PRK04020         86 FAEVVGAKAITGRFIPGTLTNPSLK--------------------------------------GY--------IEPDVVV  119 (204)
T ss_pred             HHHHhCCeeecCccCCCcCcCcchh--------------------------------------cc--------CCCCEEE
Confidence            9999999999999999999999820                                      00        2899999


Q ss_pred             EeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchh
Q psy3759         162 IIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT  225 (844)
Q Consensus       162 i~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~  225 (844)
                      ++||..|++||+||.++||||||||||||||++|||||||||||++|++|++++|+++|++|+.
T Consensus       120 v~dp~~~~~AI~EA~kl~IP~IaivDTn~dp~~VdypIP~Ndds~~SI~li~~ll~~aIl~~kg  183 (204)
T PRK04020        120 VTDPRGDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKALALVYWLLAREILRERG  183 (204)
T ss_pred             EECCcccHHHHHHHHHhCCCEEEEEeCCCCcccCceeECCCCchHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999984

>PRK09377 tsf elongation factor Ts; Provisional

Probab=100.00  E-value=2.8e-53  Score=448.29  Aligned_cols=205  Identities=43%  Similarity=0.624  Sum_probs=194.1

Q ss_pred             cchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHHhhhhhhhcccccCCCCceEEEEeCCEEEEEEEecCCchhc
Q psy3759         222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVA  301 (844)
Q Consensus       222 ~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~kg~~~a~kk~~r~~~eG~i~~y~~~~~gviveln~etdfvA  301 (844)
                      ....+|+||++||+|||||||||+++|||+|+|++|||++|.++|+||++|.|+||+|+++++++.|+|||+||||||||
T Consensus         5 s~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G~akA~Kk~~R~a~EG~I~~~~~~~~~~~vElncETDFVA   84 (290)
T PRK09377          5 TAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEGLVAAKVDGNKGVLVEVNSETDFVA   84 (290)
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhhHHHhcCccccceEEEEEeCCCEEEEEEEecCCcccc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHhcCCCChhhhccccccCCCccHHHHHHHHHHhcCCCeEEEEEEEeee-CCceeeeccC-CceE
Q psy3759         302 KNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKT-NNNLISYLHD-NKIG  379 (844)
Q Consensus       302 ~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~v~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~-g~~i~~Y~H~-~~~g  379 (844)
                      ||+.|++|+++++.++++..|.+++++.+..+  ++.||+|.+.+.++++||||+|+||.+++. |+.+++|+|+ ||+|
T Consensus        85 rne~F~~l~~~i~~~~l~~~~~~~e~ll~~~~--~g~tv~d~i~~~~~~iGEnI~l~R~~~~~~~~~~i~~Y~H~~gkig  162 (290)
T PRK09377         85 KNEDFQALANEVAEAALAAKPADVEALLALKL--DGGTVEEARTELIAKIGENISLRRFARLEKDGGVVGSYLHGGGRIG  162 (290)
T ss_pred             CChHHHHHHHHHHHHHHhcCCCCHHHHHhccc--cCCcHHHHHHHHHHHhcCceEEEEEEEEeecCCEEEEEEcCCCcEE
Confidence            99999999999999999999999999877666  357999999999999999999999999974 5679999998 6999


Q ss_pred             EEEEecCCchhHHHHHHhhhcccCCcccCccccchHHHhhhhhHHHHHH
Q psy3759         380 VIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA  428 (844)
Q Consensus       380 ~lv~~~~~~~~~~~~iamhi~a~~p~~~~~~~vp~~~i~~e~~~iv~k~  428 (844)
                      |||.+++.++++|++||||||||+|.|+++++||++++++|++++..++
T Consensus       163 vlV~~~~~~~~~ak~iAMhIaA~~P~~l~~~~vp~~~i~~E~~i~~~~~  211 (290)
T PRK09377        163 VLVALEGGDEELAKDIAMHIAAMNPEYLSREDVPAEVVEKEREIAKEQA  211 (290)
T ss_pred             EEEEEccCcHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHH
Confidence            9999999888899999999999999999999999999999999887775

>TIGR00116 tsf translation elongation factor Ts

Probab=100.00  E-value=3.9e-53  Score=447.19  Aligned_cols=205  Identities=38%  Similarity=0.556  Sum_probs=191.3

Q ss_pred             cchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHHhhhhhhhcccccCCCCceEEEEeCCEEEEEEEecCCchhc
Q psy3759         222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVA  301 (844)
Q Consensus       222 ~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~kg~~~a~kk~~r~~~eG~i~~y~~~~~gviveln~etdfvA  301 (844)
                      ....+|+||++||+|||||||||++++||+|+|++|||++|.++|+||++|.|+||+|++|++++.|+||||||||||||
T Consensus         4 sa~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~LRkkG~akA~Kk~~R~a~EG~V~~~~~~~~~~ivElncETDFVA   83 (290)
T TIGR00116         4 TAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRESGIAKAAKKADRVAAEGVIVLKSDGNKAVIVEVNSETDFVA   83 (290)
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhHHHHhcccccCCcEEEEEEcCCEEEEEEEecCCcccc
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHhcCCCChhhhccccccCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeC-CceeeeccC-CceE
Q psy3759         302 KNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTN-NNLISYLHD-NKIG  379 (844)
Q Consensus       302 ~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~v~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g-~~i~~Y~H~-~~~g  379 (844)
                      ||+.|++|+++|++++++.++.+++++.+..+. ++.|| |.+.+.++++||||+|+||.++... +.+++|+|+ ||||
T Consensus        84 rne~F~~l~~~ia~~~~~~~~~~~e~l~~~~~~-~~~tv-d~i~~~~a~iGEnI~lrR~~~~~~~~~~v~~Y~H~~gkig  161 (290)
T TIGR00116        84 KNAGFKEFANKLLDELKANKITTLEELQAQELE-NREKV-EYLAALAAKIGENINLRRVAVLEGDSNVIGSYLHAGARIG  161 (290)
T ss_pred             CChHHHHHHHHHHHHHHhcCCCCHHHHhhcccc-CCCcH-HHHHHHHHHhccceEEEEEEEEecCCCcEEEEEcCCCcEE
Confidence            999999999999999999999999998876664 45699 9999999999999999999999753 369999996 7999


Q ss_pred             EEEEecCC-chhHHHHHHhhhcccCCcccCccccchHHHhhhhhHHHHHH
Q psy3759         380 VIVEYNGD-NESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA  428 (844)
Q Consensus       380 ~lv~~~~~-~~~~~~~iamhi~a~~p~~~~~~~vp~~~i~~e~~~iv~k~  428 (844)
                      +||.+++. .++++++||||||||+|.|+++++||++++++||+++..++
T Consensus       162 vlv~~~~~~~~~~ak~iAmhIaA~~P~~l~~~~vp~~vie~Erei~~~~~  211 (290)
T TIGR00116       162 VLVALKGKADEELAKHIAMHVAASKPQFIDPDDVSAEVVKKERQIQTDQA  211 (290)
T ss_pred             EEEEEecCchHHHHHHHHHHHHhcCCccCchhhCCHHHHHHHHHHHHHHH
Confidence            99999985 45789999999999999999999999999999999877665

This protein is found in Bacteria, mitochondria, and chloroplasts.

>PRK00083 frr ribosome recycling factor; Reviewed

Probab=100.00  E-value=3.4e-52  Score=415.35  Aligned_cols=183  Identities=48%  Similarity=0.729  Sum_probs=180.3

Q ss_pred             hhhhhhHHHhHHHHHHHHHHHHHhhhcCCCcccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHH
Q psy3759         662 SDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAI  741 (844)
Q Consensus       662 ~~i~~~~~~~m~~~v~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~l~~~A~i~~~~~~~l~i~~~d~~~~~~i~kAi  741 (844)
                      ++++.+++++|++++++|+++|+++||||+||++||+|+|+|||+++||+++|+|++++|++|+|+|||++++++|++||
T Consensus         3 ~~~~~~~~~~m~kai~~l~~~l~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Isv~~~~~l~I~p~D~~~i~~I~kAI   82 (185)
T PRK00083          3 NEILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEARTLLIQPWDKSMLKAIEKAI   82 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEEECCCCccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCcceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHH
Q psy3759         742 NEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQK  821 (844)
Q Consensus       742 ~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~  821 (844)
                      ++||||+||++||++|+||||+||+|+|++++|.||+++|+||++||||||++++++|+++|++.+|||+.++++++||+
T Consensus        83 ~~s~lgl~P~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~e~eiQk  162 (185)
T PRK00083         83 RASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQK  162 (185)
T ss_pred             HHCCCCCCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcC
Q psy3759         822 LTDKFILEINQLLINKEKEILTL  844 (844)
Q Consensus       822 l~~~~~~~id~~~~~kekel~~~  844 (844)
                      +||+|+++||+++++||||||+|
T Consensus       163 ltd~~i~~id~~~~~Kekeim~v  185 (185)
T PRK00083        163 LTDKYIKKIDELLAAKEKEIMEV  185 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999986

>KOG0832|consensus

Probab=100.00  E-value=2.8e-53  Score=417.18  Aligned_cols=197  Identities=35%  Similarity=0.624  Sum_probs=178.0

Q ss_pred             CCCHHHHHhcCcccccccCCCCCCCcCccccccCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHH
Q psy3759           2 SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAN   81 (844)
Q Consensus         2 ~~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~   81 (844)
                      ++++++|+.||+||||.++.|||.|+|||||+|+|+|||||++|+.+|++|++|+.+++..||.||||||++.+...|+.
T Consensus        47 ~~~v~~L~~agvHlGh~t~~wn~~m~pyiyG~R~Gi~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~  126 (251)
T KOG0832|consen   47 LISVEELFNAGVHLGHKTGKWNPRMKPYIYGKRLGIHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVER  126 (251)
T ss_pred             hccHHHHHhccccccccccccCcccchhhcccccCcEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEE
Q psy3759          82 EAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIF  161 (844)
Q Consensus        82 ~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vi  161 (844)
                      +|++++++|++.+|+||+||||.++...+.+           .|..++++-             .|.    .+.-||+||
T Consensus       127 aA~r~~gy~~~~~w~~G~lTN~~~l~g~~~~-----------~~~~~pd~~-------------~f~----~t~~~D~vv  178 (251)
T KOG0832|consen  127 AARRAGGYSHNRKWLGGLLTNARELFGALVR-----------KFLSLPDAL-------------CFL----PTLTPDLVV  178 (251)
T ss_pred             HHHHhcCceeeeeeccceeecchhhcccccc-----------cccCCCcce-------------eec----ccCCcceeE
Confidence            9999999999999999999999987555433           122222210             111    123589999


Q ss_pred             EeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchhh
Q psy3759         162 IIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV  226 (844)
Q Consensus       162 i~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v  226 (844)
                      |+||.+++.|++||.+++|||||||||||||+++||||||||||+.|+.|+++++..|+.+|+..
T Consensus       179 vln~~e~~sAilEA~K~~IPTIgIVDtN~~P~liTYpVPaNDDs~~sv~f~~~l~k~ai~~g~~~  243 (251)
T KOG0832|consen  179 VLNPEENHSAILEAAKMAIPTIGIVDTNCNPELITYPVPANDDSPASVEFILNLLKRAIARGKQK  243 (251)
T ss_pred             ecCcccccHHHHHHHHhCCCeEEEecCCCCccceeeccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998863

>PTZ00254 40S ribosomal protein SA; Provisional

Probab=100.00  E-value=1.4e-52  Score=429.35  Aligned_cols=174  Identities=25%  Similarity=0.361  Sum_probs=165.0

Q ss_pred             CCHHHHHhcCcccccccCCCCCCCcCccccc-cCCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHH
Q psy3759           3 ITIREMLEAGVHFGHQTRFWNPKMSSYIFGH-RNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAN   81 (844)
Q Consensus         3 ~~~~~ll~a~~h~Gh~~~~wnp~m~~yi~g~-r~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~   81 (844)
                      .++++||++|+||||+  +|||+|+|||||. |+|+|||||++|+.+|++|+++|..+ .++++|||||||++++.+|++
T Consensus        13 ~~i~~lL~agvHlG~~--~~np~M~~YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i-~~~~~Il~Vstr~~~~~~V~k   89 (249)
T PTZ00254         13 DDIKKMLACKCHIGTK--NLENAMKKYVYKRTKEGVHIINLAKTWEKLKLAARVIAAI-ENPADVVVVSSRPYGQRAVLK   89 (249)
T ss_pred             HHHHHHHhcCceeccC--cCCCcccccEecccCCCCEEEcHHHHHHHHHHHHHHHHHH-hCCCcEEEEEcCHHHHHHHHH
Confidence            5789999999999985  7999999999997 59999999999999999999999998 679999999999999999999


Q ss_pred             HHHHcCCccccccccCCCCCChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEE
Q psy3759          82 EAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIF  161 (844)
Q Consensus        82 ~a~~~~~~~v~~rw~~G~lTN~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vi  161 (844)
                      +|.++|++||++||+||+||||.+-                 .|                             ++||+||
T Consensus        90 ~A~~tg~~~i~~Rw~pGtlTN~~~~-----------------~f-----------------------------~~P~llI  123 (249)
T PTZ00254         90 FAQYTGASAIAGRFTPGTFTNQIQK-----------------KF-----------------------------MEPRLLI  123 (249)
T ss_pred             HHHHhCCeEECCcccCCCCCCcccc-----------------cc-----------------------------CCCCEEE
Confidence            9999999999999999999999640                 11                             4899999


Q ss_pred             EeCCCCcchHHHHHHhcCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchh
Q psy3759         162 IIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT  225 (844)
Q Consensus       162 i~~~~~~~~ai~Ea~~l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~  225 (844)
                      |+||..|++||+||.++||||||||||||+|++|||||||||||++||.|++++|+++|++++.
T Consensus       124 V~Dp~~d~qAI~EA~~lnIPvIal~DTds~p~~VDy~IP~Ndds~~SI~li~~lLar~Vl~~rG  187 (249)
T PTZ00254        124 VTDPRTDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGKESIALMYWLLAREVLRLRG  187 (249)
T ss_pred             EeCCCcchHHHHHHHHhCCCEEEEecCCCCcccCceeeCCCCchHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999886

>TIGR00496 frr ribosome recycling factor

Probab=100.00  E-value=4.5e-51  Score=404.13  Aligned_cols=175  Identities=46%  Similarity=0.731  Sum_probs=173.2

Q ss_pred             HhHHHHHHHHHHHHHhhhcCCCcccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCCc
Q psy3759         670 QKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLN  749 (844)
Q Consensus       670 ~~m~~~v~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~l~~~A~i~~~~~~~l~i~~~d~~~~~~i~kAi~~s~l~~~  749 (844)
                      ++|++++++|+++|+++|+||+||++||+|+|+|||+++||+++|+|+++++++|.|+|||++++++|++||++||||+|
T Consensus         2 ~~M~k~i~~~~~~l~~irtGra~p~ild~I~V~~yg~~~pL~~lA~vsv~~~~~l~I~p~D~~~~~~I~kAI~~s~lgln   81 (176)
T TIGR00496         2 ERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQPFDKSNINAIEKAIQRSDLGLN   81 (176)
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEecCChhhHHHHHHHHHHCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHH
Q psy3759         750 PTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILE  829 (844)
Q Consensus       750 p~~~~~~i~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~  829 (844)
                      |+.||++||||||+||+|+|++++|.||+.+|+||++||||||++++++|+++|++.+|||+.++++++||++||+|+++
T Consensus        82 P~~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~  161 (176)
T TIGR00496        82 PNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKK  161 (176)
T ss_pred             cccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcC
Q psy3759         830 INQLLINKEKEILTL  844 (844)
Q Consensus       830 id~~~~~kekel~~~  844 (844)
                      +|+++++||||||+|
T Consensus       162 id~~~~~Kekeim~v  176 (176)
T TIGR00496       162 IDEILKDKEKELMEV  176 (176)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999986

This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.

>cd00520 RRF Ribosome recycling factor (RRF)

Probab=100.00  E-value=9.9e-50  Score=397.46  Aligned_cols=178  Identities=49%  Similarity=0.724  Sum_probs=175.7

Q ss_pred             hhhHHHhHHHHHHHHHHHHHhhhcCCCcccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhc
Q psy3759         665 KKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEA  744 (844)
Q Consensus       665 ~~~~~~~m~~~v~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~l~~~A~i~~~~~~~l~i~~~d~~~~~~i~kAi~~s  744 (844)
                      +++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||+++|+|+++++++|+|+|||++++++|++||++|
T Consensus         2 ~~~~~~~m~k~i~~~~~~l~~irtGrasp~lld~I~V~~yg~~~pL~~lA~Vsv~~~~~l~I~p~D~~~i~~I~kAI~~s   81 (179)
T cd00520           2 LKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFDKSAIKAIEKAILNS   81 (179)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEeecchhhHHHHHHHHHHC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHH
Q psy3759         745 NLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTD  824 (844)
Q Consensus       745 ~l~~~p~~~~~~i~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~  824 (844)
                      |||+||++||++|+||||+||+|+|++++|.||+.+|+||++|||+||++++++|++++++.+|||+.++++++||++||
T Consensus        82 ~l~l~P~~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkltd  161 (179)
T cd00520          82 DLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTD  161 (179)
T ss_pred             CCCCCcCcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q psy3759         825 KFILEINQLLINKEKEIL  842 (844)
Q Consensus       825 ~~~~~id~~~~~kekel~  842 (844)
                      +|++++|++++.||||||
T Consensus       162 ~~i~~id~~~~~Kekeim  179 (179)
T cd00520         162 EYIKKIDELLKSKEKELL  179 (179)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999999999999999997

Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.

>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []

Probab=100.00  E-value=4.2e-44  Score=354.38  Aligned_cols=165  Identities=48%  Similarity=0.713  Sum_probs=160.6

Q ss_pred             HHHHHHHhhhcCCCcccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCCcceecCCee
Q psy3759         678 ILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNII  757 (844)
Q Consensus       678 ~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~l~~~A~i~~~~~~~l~i~~~d~~~~~~i~kAi~~s~l~~~p~~~~~~i  757 (844)
                      ||+++|+++|+||+||++||+|+|++||+.+||+++|+|+++++++|+|+|||++++++|++||++|+||+||+.||++|
T Consensus         1 ~~~~~l~~ir~gr~~p~~ld~i~V~~~g~~~~L~~lA~V~~~~~~~l~I~~~d~~~i~~I~kAI~~s~l~l~p~~d~~~i   80 (165)
T PF01765_consen    1 HFKEELSKIRTGRANPAILDNIKVEYYGSKVPLNELAQVSVKDPRTLVITPYDPSLIKAIEKAIQKSNLNLNPQNDGNTI   80 (165)
T ss_dssp             HHHHHHHTSSSSSSSGGGGTTSEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTHHHHHHHHHHHTTSSSEEEEETTEE
T ss_pred             ChHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEeccccchHHHHHHHHHCCCCCCcccCCcEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3759         758 YVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK  837 (844)
Q Consensus       758 ~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k  837 (844)
                      +|+||+||+|+|++++|.||+.+|+||++||++|+++++++|++++++.+|+|+.++++++||++||+|++++|++++.|
T Consensus        81 ~v~iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k  160 (165)
T PF01765_consen   81 RVPIPPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELLKKK  160 (165)
T ss_dssp             EEE--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhh
Q psy3759         838 EKEIL  842 (844)
Q Consensus       838 ekel~  842 (844)
                      |||||
T Consensus       161 ekell  165 (165)
T PF01765_consen  161 EKELL  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHhhC
Confidence            99998

Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....

>PRK12332 tsf elongation factor Ts; Reviewed

Probab=100.00  E-value=6.4e-42  Score=343.80  Aligned_cols=147  Identities=46%  Similarity=0.631  Sum_probs=140.4

Q ss_pred             cchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHHhhhhhhhcccccCCCCceEEEEe--CCEEEEEEEecCCch
Q psy3759         222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDF  299 (844)
Q Consensus       222 ~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~kg~~~a~kk~~r~~~eG~i~~y~~--~~~gviveln~etdf  299 (844)
                      ....+|+||++||+|||||||||++++||+|+|++|||++|.++|.||++|.|+||+|++|+|  ++.|+|||+||||||
T Consensus         4 ~a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~lr~~g~~~a~kk~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDF   83 (198)
T PRK12332          4 TAKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKGLAKAAKKAGRVAAEGLVGSYIHTGGRIGVLVELNCETDF   83 (198)
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhccccccCceEEEEEecCCCEEEEEEEeccCCc
Confidence            456799999999999999999999999999999999999999999999999999999999999  899999999999999


Q ss_pred             hccchHHHHHHHHHHHHHHhcCCCChhh----------------------------------------------hccccc
Q psy3759         300 VAKNNEFIKFSKKIAKLITENTPINLDQ----------------------------------------------LNNLKI  333 (844)
Q Consensus       300 vA~n~~f~~la~~ia~~iaa~~p~~~~~----------------------------------------------l~q~~v  333 (844)
                      ||||+.|++|+++|||||||++|.+++.                                              +.|+|+
T Consensus        84 Va~n~~F~~lak~iamhIaA~~P~~l~~~~v~~~~i~~E~~i~~~~~~~~gKP~~i~ekiv~Grl~K~~~E~~Ll~Q~fv  163 (198)
T PRK12332         84 VARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVIEKEKEIYRAQALNEGKPENIVEKIVEGRIEKFYKEVCLLEQPFI  163 (198)
T ss_pred             cccCHHHHHHHHHHHHHHHhhCCccCChhhCCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHHHHHHHhhhhhhcCccc
Confidence            9999999999999999999999987644                                              578999


Q ss_pred             cCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeCCc
Q psy3759         334 KNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNN  368 (844)
Q Consensus       334 ~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g~~  368 (844)
                      .|++.||+|++.+.++++||||+|+||.||++|||
T Consensus       164 ~d~~~TV~e~l~e~~a~iGEnI~V~rF~R~evGeg  198 (198)
T PRK12332        164 KDPSKTVEDLIKEAIAKIGENIVVRRFARFELGEG  198 (198)
T ss_pred             CCCCccHHHHHHHHHHHhCCCeEEEEEEEEEcCCC
Confidence            99899999999999999999999999999999985

>CHL00098 tsf elongation factor Ts

Probab=100.00  E-value=3.8e-41  Score=337.71  Aligned_cols=148  Identities=45%  Similarity=0.591  Sum_probs=141.2

Q ss_pred             chhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHHhhhhhhhcccccCCCCceEEEEe--CCEEEEEEEecCCchh
Q psy3759         223 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDFV  300 (844)
Q Consensus       223 g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~kg~~~a~kk~~r~~~eG~i~~y~~--~~~gviveln~etdfv  300 (844)
                      ...+|+||++||+||||||+||++++||+|+|++|||++|.++|+||++|.|+||+|++|+|  +++|||||+|||||||
T Consensus         2 a~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g~~~a~kk~~r~~~eG~V~~yiH~~gk~gvlVeln~ETDfV   81 (200)
T CHL00098          2 AELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQKGLASANKKSTRITTEGLIESYIHTGGKLGVLVEINCETDFV   81 (200)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhccccccCeEEEEEecCCCEEEEEEEecCcccc
Confidence            35799999999999999999999999999999999999999999999999999999999998  7999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHhc-CCCChhh----------------------------------------------hccccc
Q psy3759         301 AKNNEFIKFSKKIAKLITEN-TPINLDQ----------------------------------------------LNNLKI  333 (844)
Q Consensus       301 A~n~~f~~la~~ia~~iaa~-~p~~~~~----------------------------------------------l~q~~v  333 (844)
                      |||+.|++||++|||||||+ +|.+++.                                              ++|+|+
T Consensus        82 Arn~~F~~la~~IAmhiaA~p~p~~l~~~~vp~~~i~~E~~i~~~~~~~~gKp~~i~ekiv~Grl~k~~~e~~LLeQ~fv  161 (200)
T CHL00098         82 ARREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLEKKIESEKDDLQNKPEEIKEKIVEGRIKKRLKELSLLDQPFI  161 (200)
T ss_pred             cccHHHHHHHHHHHHHHHcCCCCeEecHHHCCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhhHHHHHHHHhhhhcCccc
Confidence            99999999999999999999 6876554                                              789999


Q ss_pred             cCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeCCcee
Q psy3759         334 KNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLI  370 (844)
Q Consensus       334 ~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g~~i~  370 (844)
                      +|+++||++++++.++++|||++|+||.||++|||+.
T Consensus       162 ~D~~~TV~~~l~e~~akiGeni~V~rF~R~~vGegie  198 (200)
T CHL00098        162 RDQSITVEELIKQNIAKLGENIQIRRFARFTLGEGEE  198 (200)
T ss_pred             CCCCccHHHHHHHHHHhcCCCcEEEEEEEEEecCCcc
Confidence            9999999999999999999999999999999999863

>KOG4759|consensus

Probab=100.00  E-value=2.9e-39  Score=326.53  Aligned_cols=182  Identities=40%  Similarity=0.558  Sum_probs=175.2

Q ss_pred             hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCcccccceeEEEecccccccceeeeeeccCCceEEEecCC-cccHHHHHH
Q psy3759         661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKK  739 (844)
Q Consensus       661 ~~~i~~~~~~~m~~~v~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~l~~~A~i~~~~~~~l~i~~~d-~~~~~~i~k  739 (844)
                      ...+..++.++|+++++.|+++|.++++||++|.+||+|.|+++|.++||+++|+||.++|++|+|+||| |..+++|++
T Consensus        81 ~~~~~~~~~sqmek~ie~lke~~~k~~~gr~~~~~~d~I~vk~~g~~~~L~~IA~vS~K~p~~ilIn~~d~p~~ikai~k  160 (263)
T KOG4759|consen   81 ENAVEAKANSQMEKTIEALKEDFNKIRQGRFNPGMLDKIVVKANGPKRPLNEIAQVSLKGPQTILINPFDFPVDIKAILK  160 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhheeeecCCCcccHHHHHHHhcCCCceEEEecccCchHHHHHHH
Confidence            3556789999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHhcCCCCcceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHH
Q psy3759         740 AINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDI  819 (844)
Q Consensus       740 Ai~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~K~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~i  819 (844)
                      ||++|+||+||++||.+|+|+|||+|.|+|++++|.+++++|++|++||++|++++++++|.++.  +++|+++++|+++
T Consensus       161 AI~~S~lnltP~~dg~~l~vsiP~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~--~~~D~vkkae~~l  238 (263)
T KOG4759|consen  161 AIEASGLNLTPNLDGTVLRVSIPPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS--LSEDEVKKAEAEL  238 (263)
T ss_pred             HHHhCCCCCCcCCCCcEEEecCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CChhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998876543  9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcC
Q psy3759         820 QKLTDKFILEINQLLINKEKEILTL  844 (844)
Q Consensus       820 q~l~~~~~~~id~~~~~kekel~~~  844 (844)
                      |+++|.|++++|++++.||||||..
T Consensus       239 ~~l~k~~v~~ld~llkskeKellk~  263 (263)
T KOG4759|consen  239 QKLAKDAVNKLDDLLKSKEKELLKQ  263 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999863

>KOG1071|consensus

Probab=100.00  E-value=1.6e-39  Score=334.32  Aligned_cols=187  Identities=33%  Similarity=0.471  Sum_probs=164.3

Q ss_pred             cchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHH----hhhhhhhcccccCCCCceEEEEeCCEEEEEEEecCC
Q psy3759         222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK----LGKKILNISNRNAKDGVIAIYISEKVGSLVEINCET  297 (844)
Q Consensus       222 ~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~k----g~~~a~kk~~r~~~eG~i~~y~~~~~gviveln~et  297 (844)
                      +-..+|+||++||++|++|||||+|+|||+..|.+||+|+    |..+|+|+++|+|+||+|++|+|+..+||||+||||
T Consensus        46 ~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~~L~k~aqk~g~~~A~K~~sR~t~eGlIgv~~~~~r~vlvElNCET  125 (340)
T KOG1071|consen   46 SKALLKKLREKTGASMVNCKKALEECGGDLVLAEEWLHKKAQKEGWSKAAKKASRTTKEGLIGVLQEDGRTVLVELNCET  125 (340)
T ss_pred             cHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhhHHhhhcccccccceeEEEEeCCeEEEEEeeccc
Confidence            3346899999999999999999999999999999999999    557799999999999999999997777999999999


Q ss_pred             chhccchHHHHHHHHHHHHHHh------cCCCChh-------------------hhccccccCCCccHHHHHHHHHHhcC
Q psy3759         298 DFVAKNNEFIKFSKKIAKLITE------NTPINLD-------------------QLNNLKIKNNLLTVDEKCKELISRIG  352 (844)
Q Consensus       298 dfvA~n~~f~~la~~ia~~iaa------~~p~~~~-------------------~l~q~~v~~~~~tv~~~l~~~~~~~g  352 (844)
                      ||||||+.||.|+.+||+.+++      .+|..++                   .+.+.+..+++.|++|.+...++++|
T Consensus       126 DFVARn~~Fq~Lv~~iA~~~l~~~~~~~~~~s~~s~e~~l~~~~~g~kl~~~~~~l~~~~d~~gkvsl~d~l~~~i~~~G  205 (340)
T KOG1071|consen  126 DFVARNDIFQDLVDQIALSVLAHCQTLKTKHSSYSKEKELEMDGRGFKLSESLSLLPNLPDVEGKVSLKDQLALAIGKLG  205 (340)
T ss_pred             chhhccchHHHHHHHHHHHHHHhhhhcccChhhhhhhhhccccchHHHhhHHHhhccCCCCcccceeHHHHHHHHHHHhc
Confidence            9999999999999999998877      2333222                   15566777777799999999999999


Q ss_pred             CCeEEEEEEEeeeCCc--eeeeccC------------CceEEEEEecCCch------hHHHHHHhhhcccCCcccC
Q psy3759         353 ENIKIRRFKLFKTNNN--LISYLHD------------NKIGVIVEYNGDNE------SAVKDVAMHIAAMKPIALS  408 (844)
Q Consensus       353 eni~l~rf~~~~~g~~--i~~Y~H~------------~~~g~lv~~~~~~~------~~~~~iamhi~a~~p~~~~  408 (844)
                      ||++++|+.+|..+++  +++|.|+            |++|.||+++...+      .+++.||.||++|+|..+.
T Consensus       206 ENvkvrR~~~~ka~~g~~l~~y~H~A~q~agt~~l~~g~~~alvAi~~~~s~~~~~~~~~~~i~q~ivgm~p~s~~  281 (340)
T KOG1071|consen  206 ENVKVRRAACMKAPSGTYLGSYSHGAPQSAGTHKLPLGEYGALVAINSVSSQLTSLEDVAKQICQHIVGMSPESVG  281 (340)
T ss_pred             cceEEeEEEEEecCCCceEEeeecCCCCCccccccccccchhhhhhhhccchhhhHHHHHHHHHHHhhccChhhhc
Confidence            9999999999998665  8999995            37899998876543      4789999999999999876

>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=8.7e-38  Score=314.26  Aligned_cols=233  Identities=50%  Similarity=0.796  Sum_probs=223.0

Q ss_pred             hhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHH
Q psy3759         421 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII  500 (844)
Q Consensus       421 ~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (844)
                      ++|+++|+  +|+.+..+.++.+|++.+.+++++|+++.+.|+++.||.|||+.++++.....++++..+|+++++++.+
T Consensus         5 ~~rillkL--sGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvm   82 (238)
T COG0528           5 YMRILLKL--SGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVM   82 (238)
T ss_pred             eEEEEEEe--ecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHH
Confidence            46788898  8888877677889999999999999999999999999999999999999988899999999999999999


Q ss_pred             HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec
Q psy3759         501 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK  580 (844)
Q Consensus       501 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTD  580 (844)
                      ++.+|.+.|...|++++.+|+..++++..+++.+...+.++.|.|+|++|+.|+|++|+|++|+++|..++||.|+..|+
T Consensus        83 Nal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~atn  162 (238)
T COG0528          83 NALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATN  162 (238)
T ss_pred             HHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEecc
Confidence            99999999999999999999999998899999999999999999999999999999999999999999999999999995


Q ss_pred             -ccccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759         581 -VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE  655 (844)
Q Consensus       581 -VdGVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  655 (844)
                       |||||++||+.+|+|++++++++.|+.+.+..++|++|+.+++++++|++++|+.+++++.+++.|+..||.|.+
T Consensus       163 ~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~~  238 (238)
T COG0528         163 KVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP  238 (238)
T ss_pred             CCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEecC
Confidence             999999999999999999999999999999999999999999999999999999999999999999999999863

>PRK14556 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=1.9e-36  Score=314.20  Aligned_cols=233  Identities=45%  Similarity=0.681  Sum_probs=218.3

Q ss_pred             hhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc-cCCCcchHHHHHHHHHH
Q psy3759         421 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-QNIDRSTADYMGMLATI  499 (844)
Q Consensus       421 ~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~-~~~~~~~~~~~~~~~~~  499 (844)
                      ++|+++|+  +|+++..+++..+|++.+.+++++|+++.+.|+++.||+|||+.+++..... .++++..+|+++|+++.
T Consensus        15 ~~rvllKl--sGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~   92 (249)
T PRK14556         15 LKRILLKL--SGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATM   92 (249)
T ss_pred             hCEEEEEE--ehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHH
Confidence            57889998  8888876666789999999999999999999999999999999999855553 46899999999999999


Q ss_pred             HHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEee
Q psy3759         500 INSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKAT  579 (844)
Q Consensus       500 ~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilT  579 (844)
                      +|+.+|.++|...|++++.+++.....++++++.+.+.+.++.|.|||++|+.|+|++|+|++|+++|..++||+|+++|
T Consensus        93 iNal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~T  172 (249)
T PRK14556         93 INALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKAT  172 (249)
T ss_pred             HHHHHHHHHHHHcCCCeEEeeccccCcCCCCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEe
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759         580 KVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE  655 (844)
Q Consensus       580 DVdGVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  655 (844)
                      |||||||+||+.+|+|++++++++.+..+.+..++++.|+++|.++|+|++|+|+.+|++|.+++.|+.+||+|+-
T Consensus       173 dVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~  248 (249)
T PRK14556        173 TVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL  248 (249)
T ss_pred             CCCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence            9999999999999999999999999887777788999999999999999999999999999999999999999963

>PRK14558 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=8e-34  Score=297.94  Aligned_cols=229  Identities=41%  Similarity=0.655  Sum_probs=196.1

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHHHH
Q psy3759         423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINS  502 (844)
Q Consensus       423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (844)
                      |+++|+  +|+.++..++..++.+.+++++++|+++++.|++++||||||+++++...  .++++...+.+++....++.
T Consensus         2 riviKl--Ggs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~--~~~~~~~~d~ig~~~~~ln~   77 (231)
T PRK14558          2 RVLLKL--SGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVEL--KELSPTRADQIGMLGTVINA   77 (231)
T ss_pred             eEEEEe--eHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhc--cCCChHHHHHHHHHHHHHHH
Confidence            567886  56655544456699999999999999999999999999999988665332  24455567777777777777


Q ss_pred             HHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccc
Q psy3759         503 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD  582 (844)
Q Consensus       503 ~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTDVd  582 (844)
                      .++..+|..+|++++.+++........+...+.+..+++.|.|||++|+.|.+..++|++|+++|..++||.|+++||||
T Consensus        78 ~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdVd  157 (231)
T PRK14558         78 LYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVD  157 (231)
T ss_pred             HHHHHHHHHcCCCeEEeccccccchhhhhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecCC
Confidence            77899999999999887754222112344578889999999999999988889999999999999999999999999999


Q ss_pred             ccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759         583 GIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE  655 (844)
Q Consensus       583 GVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  655 (844)
                      ||||+||+.+|+|+++++++++|+.+.|..++|+.|+++|.++|+|++|+||.+|+++.+++.|+.+||+|.+
T Consensus       158 Gvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~  230 (231)
T PRK14558        158 GIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP  230 (231)
T ss_pred             eeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence            9999999999999999999999998888899999999999999999999999999999999999999999976

>PRK00358 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=8.3e-34  Score=298.13  Aligned_cols=230  Identities=52%  Similarity=0.834  Sum_probs=199.8

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHHHH
Q psy3759         423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINS  502 (844)
Q Consensus       423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (844)
                      ++|+|+  +|+.+..+.+..++.+.+++++++|+++.+.|+++|||||||++++++.....+++...+++.+++++.++.
T Consensus         2 ~iViK~--GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~   79 (231)
T PRK00358          2 RVLLKL--SGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGMDRATADYMGMLATVMNA   79 (231)
T ss_pred             eEEEEe--ccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHhhcCCChhhHHHHHHHHHHHHH
Confidence            356776  676665455567899999999999999999999999999999888876532234555678899998888898


Q ss_pred             HHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccc
Q psy3759         503 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD  582 (844)
Q Consensus       503 ~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTDVd  582 (844)
                      .+|+..|..+|+++..+++........++..+.+.++|++|.|||++|+.|++..++|++|+++|.+|+||+|+++||||
T Consensus        80 ~ll~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVd  159 (231)
T PRK00358         80 LALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVD  159 (231)
T ss_pred             HHHHHHHHHcCCCeEEechhhcccccCcccHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcC
Confidence            89999999999999866665554444445567788999999999999988888899999999999999999999999999


Q ss_pred             ccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         583 GIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       583 GVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      ||||+||+.+|+|++|++++++++.+.|++++|++|+++|.++|++++|+||.+|++|.++++|+..||+|.
T Consensus       160 GVy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~  231 (231)
T PRK00358        160 GVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS  231 (231)
T ss_pred             ceEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence            999999999999999999999988777888999999999999999999999999999999999998999984

>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]

Probab=100.00  E-value=2.2e-34  Score=296.68  Aligned_cols=154  Identities=43%  Similarity=0.692  Sum_probs=134.4

Q ss_pred             CCCCceEEEEeCCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhhhccccccCCCccHHHHHHHHHHhcCC
Q psy3759         274 AKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGE  353 (844)
Q Consensus       274 ~~eG~i~~y~~~~~gviveln~etdfvA~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~v~~~~~tv~~~l~~~~~~~ge  353 (844)
                      |+||+|++++++..|+|||+||||||||||+.|++|+++||..++...+.+++++.+..+.+  .||+|.+.++++++||
T Consensus         1 a~EG~V~~~v~~~~a~~vElncETDFVArn~~F~~l~~~ia~~~~~~~~~~~~~l~~~~~~~--~tv~d~i~~~i~~igE   78 (221)
T PF00889_consen    1 AAEGLVGIAVSGDKAAMVELNCETDFVARNEEFQNLAKEIADAALENKASDVEELLALPLAS--KTVKDAIAELIAKIGE   78 (221)
T ss_dssp             --EEEEEEEEETTEEEEEEEEESSHHHHTSHHHHHHHHHHHHHHHCTTEESHHHHHHSB--S--SHHHHHHHHHHHHH-S
T ss_pred             CCceEEEEEEeCCcEEEEEEEccccceecCHHHHHHHHHHHHHHHHhCCCCHHHHHhccccc--ccHHHHHHHHHHHhCC
Confidence            57999999999888999999999999999999999999999999988888999988877765  7999999999999999


Q ss_pred             CeEEEEEEEeee-CCceeeeccC-CceEEEEEecCCch---hHHHHHHhhhcccCCcccCccccchHHHhhhhhHHHHHH
Q psy3759         354 NIKIRRFKLFKT-NNNLISYLHD-NKIGVIVEYNGDNE---SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA  428 (844)
Q Consensus       354 ni~l~rf~~~~~-g~~i~~Y~H~-~~~g~lv~~~~~~~---~~~~~iamhi~a~~p~~~~~~~vp~~~i~~e~~~iv~k~  428 (844)
                      ||+|+||.+++. ++.+++|+|+ ||+|+||.++++++   ++|++||||||||+|.|+++++||++++++|++++..++
T Consensus        79 nI~l~r~~~~~~~~~~v~~Y~H~~gkig~lV~~~~~~~~~~~~ak~iAmhIaA~~P~~l~~~~vp~~~~~~E~~i~~~~~  158 (221)
T PF00889_consen   79 NIQLRRAARISAPNGFVGSYVHNNGKIGVLVALEGDNDSAKEFAKDIAMHIAAMNPKYLSEEDVPAEVLEKEKEIAKEQA  158 (221)
T ss_dssp             -EEEEEEEEEE-TTSEEEEEEET-TTEEEEEEEET-SHGGHHHHHHHHHHHHHH--SBSSCTGS-CCHHHHHHHHHHHHH
T ss_pred             CEEEeEEEEEeccCCEEEEEECCCCcEEEEEEEEcCcchHHHHHHHHHHHHhhhCccccCcccCCHHHHHHHHHHHHHHh
Confidence            999999999987 3468999999 89999999999887   799999999999999999999999999999999887776


Q ss_pred             H
Q psy3759         429 Q  429 (844)
Q Consensus       429 ~  429 (844)
                      .
T Consensus       159 ~  159 (221)
T PF00889_consen  159 K  159 (221)
T ss_dssp             H
T ss_pred             h
Confidence            3

EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the C-terminal dimerisation domain found primarily in EF-Tu (EF1A) proteins from bacteria, mitochondria and chloroplasts. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005622 intracellular; PDB: 1XB2_B 3AVU_A 3AVW_A 3AGQ_A 3AGP_A 3AVT_A 3AVY_A 3AVX_A 3AVV_A 1TFE_A ....

>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

Probab=100.00  E-value=4.4e-33  Score=292.07  Aligned_cols=228  Identities=51%  Similarity=0.833  Sum_probs=203.1

Q ss_pred             HHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHHHHH
Q psy3759         424 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL  503 (844)
Q Consensus       424 iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (844)
                      +|+|+  +|+.+. +++..++.+.+++++++|+++.+.|++++||||||.++.++.....++++..+++.++.++.+++.
T Consensus         2 iViKi--GGs~l~-~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~   78 (229)
T cd04239           2 IVLKL--SGEALA-GEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPRATADYIGMLATVMNAL   78 (229)
T ss_pred             EEEEE--Ccceec-CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhhcCCChhhHHHHHHHHHHHHHH
Confidence            46675  555544 444478999999999999999989999999999998877766655556666789999999999999


Q ss_pred             HHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecccc
Q psy3759         504 ALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG  583 (844)
Q Consensus       504 ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTDVdG  583 (844)
                      +|+.+|..+|+++..+++.++......++.+.+..+++.|.|||++|+.|.+..++|++|+++|..++||+|+++|||||
T Consensus        79 l~~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdG  158 (229)
T cd04239          79 ALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDG  158 (229)
T ss_pred             HHHHHHHHcCCCEEEeCHHHHhhhhccccHHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCc
Confidence            99999999999999999887766555667888999999999999999989988999999999999999999999999999


Q ss_pred             cccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         584 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       584 Vyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      |||+||+.+|++++|++++++++.+.+++++|++|++++.++|++++|+||..|+++.+++.|+..||+|.
T Consensus       159 vy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~  229 (229)
T cd04239         159 VYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE  229 (229)
T ss_pred             ccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence            99999999999999999999998887779999999999999999999999999999999999998999983

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als

>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=100.00  E-value=4.5e-33  Score=292.13  Aligned_cols=230  Identities=54%  Similarity=0.866  Sum_probs=201.4

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHHHH
Q psy3759         423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINS  502 (844)
Q Consensus       423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (844)
                      ++|+|+  +|++++..+|..++.+.+++++++|+++...|+++|||||||+++++......+......++++++.+..+.
T Consensus         2 ~iViKl--GGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~~~~~~~~~~~d~~g~~~~~~n~   79 (231)
T cd04254           2 RVLLKL--SGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMDRATADYMGMLATVINA   79 (231)
T ss_pred             eEEEEe--CceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchhhhcCCCchhhhHHHHHHHHHHH
Confidence            356776  788777666778899999999999999988899999999999875443233334444456788887777788


Q ss_pred             HHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccc
Q psy3759         503 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD  582 (844)
Q Consensus       503 ~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTDVd  582 (844)
                      .++++.|..+|+++..+++.+...+...++.+.+..+++.|.|||++|+.|.+.+++|++|+++|..++||+|+++||||
T Consensus        80 ~ll~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVd  159 (231)
T cd04254          80 LALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVD  159 (231)
T ss_pred             HHHHHHHHHcCCCeEEEcHHHhhhhhcccCHHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCC
Confidence            88999999999999999998765444567789999999999999999998889999999999999999999999999999


Q ss_pred             ccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         583 GIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       583 GVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      |||++||+.+|+++++++++++++.+.|...+|++++++|.++|++++|+||.+|++|.+++.|+.+||+|+
T Consensus       160 Gvy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~  231 (231)
T cd04254         160 GVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS  231 (231)
T ss_pred             EEEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence            999999999999999999999998887888999999999999999999999999999999999999999984

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be

>TIGR02075 pyrH_bact uridylate kinase

Probab=100.00  E-value=5.3e-33  Score=291.78  Aligned_cols=231  Identities=57%  Similarity=0.845  Sum_probs=203.3

Q ss_pred             hHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHHH
Q psy3759         422 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN  501 (844)
Q Consensus       422 ~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (844)
                      +++|+|+  +|++++.+++..++.+.+++++++|+++...|+++|||||||+++.++.....+.+....++++++.+.++
T Consensus         2 ~~iViKl--GGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~a~~~~~~~~~~d~~g~~~~~l~   79 (233)
T TIGR02075         2 KRVLLKL--SGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKELGIDRVTADYMGMLATVIN   79 (233)
T ss_pred             CEEEEEe--ChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence            4567887  77777665566789999999999999998889999999999987666543333444555789999999999


Q ss_pred             HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec-
Q psy3759         502 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK-  580 (844)
Q Consensus       502 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTD-  580 (844)
                      +++|+..|..+|+++..+++.++......+..+.+..++++|.|||+.|+.|.+.+++|++|+++|..++||+|+++|| 
T Consensus        80 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~  159 (233)
T TIGR02075        80 GLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNG  159 (233)
T ss_pred             HHHHHHHHHhCCCCcEEeccccCCCCccccCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecc
Confidence            9999999999999999999987663333456788999999999999999888999999999999999999999999999 


Q ss_pred             ccccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         581 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       581 VdGVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      ||||||+||+.+|++++|++++++|+.+.|...+|++++++|.++|++++|+||.+|++|.+++.|+.+||+|+
T Consensus       160 VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~  233 (233)
T TIGR02075       160 VDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS  233 (233)
T ss_pred             cCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence            99999999999999999999999998877777899999999999999999999999999999999999999984

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.

>PRK14557 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=4.3e-33  Score=292.79  Aligned_cols=237  Identities=39%  Similarity=0.637  Sum_probs=206.0

Q ss_pred             hhhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHH
Q psy3759         420 EYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATI  499 (844)
Q Consensus       420 e~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (844)
                      .++++|+|+  +|+++..++...++.+.+++++++|+++.+.|++++||||||+.+++......+++...+|.++++++.
T Consensus         3 ~~~riViKl--GG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~~a~~~~~~~~~~D~ig~~g~~   80 (247)
T PRK14557          3 PYKRVLIKL--SGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEADNIGTLGTI   80 (247)
T ss_pred             cccEEEEEe--CceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            356788998  888887655567888899999999999999999999999999877643333345677788999999999


Q ss_pred             HHHHHHHHHHHHc-CCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEe
Q psy3759         500 INSLALFDILNKS-GIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKA  578 (844)
Q Consensus       500 ~~~~ll~~~L~~~-gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~Liil  578 (844)
                      +++.++..+|+.. +..+..++...++....++....+...|+.|.|||++|+.|.+.+|+|++|+++|..++||+|+++
T Consensus        81 lna~ll~~~l~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~  160 (247)
T PRK14557         81 INSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVA  160 (247)
T ss_pred             HHHHHHHHHHHhhhCCceeEEeccccccccchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEe
Confidence            9999999998874 676666666666666666666778888999999999999999999999999999999999999999


Q ss_pred             -ecccccccCCCCCCCCceeecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEecc
Q psy3759         579 -TKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIY  657 (844)
Q Consensus       579 -TDVdGVyt~dP~~~~~a~~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~  657 (844)
                       ||||||||+||+.+|+|++|+++++.|+...+..++++.|+++|.++|++++|+||.+|++|.+++.|+.+||+|.+.+
T Consensus       161 ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~  240 (247)
T PRK14557        161 KQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDA  240 (247)
T ss_pred             cCCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCc
Confidence             5999999999999999999999999887666667788999999999999999999999999999999999999999864


Q ss_pred             h
Q psy3759         658 I  658 (844)
Q Consensus       658 ~  658 (844)
                      .
T Consensus       241 ~  241 (247)
T PRK14557        241 S  241 (247)
T ss_pred             c
Confidence            3

>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]

Probab=99.97  E-value=9.8e-32  Score=283.85  Aligned_cols=225  Identities=18%  Similarity=0.222  Sum_probs=189.6

Q ss_pred             hhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCc----hHHhhhccccccCCCcchHHHHHHH
Q psy3759         421 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG----GNICRGISNKIQNIDRSTADYMGML  496 (844)
Q Consensus       421 ~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGG----G~~~~~~~~~~~~~~~~~~~~~~~~  496 (844)
                      .+++|+|+   |+++++++.+.++...+..++++|+.|+..|++||||+||    |...+++..     .|..+...|++
T Consensus         6 ~~riVvKi---GSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~-----rp~~l~~kQA~   77 (369)
T COG0263           6 ARRIVVKI---GSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPK-----RPKTLAEKQAA   77 (369)
T ss_pred             ceEEEEEE---CcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCC-----CCcchHHHHHH
Confidence            46788994   5566666678899999999999999999999999999888    344444333     35677888889


Q ss_pred             HHHHHHHHHHHH---HHHcCCce--eEeehhchhhhhhccch-HHHHHHHhCCCEEEEeCCCCCCCCc--------chHH
Q psy3759         497 ATIINSLALFDI---LNKSGIIS--HVMSAISIEKFLESYIP-LNAIKYLEEGKVVIFAGGIGNPFFT--------TDTT  562 (844)
Q Consensus       497 ~~~~~~~ll~~~---L~~~gi~a--~~l~~~~~~~~~~~~~~-~~l~~lL~~g~VPVv~G~~G~~~~s--------~D~l  562 (844)
                      ++.+|..+|..|   |..+|+..  +.++..++....+..|. ..+..+|+.|.||||+   +|+.++        ||++
T Consensus        78 AAVGQ~~Lm~~y~~~f~~~g~~v~QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIIN---ENDtva~~EikfGDND~L  154 (369)
T COG0263          78 AAVGQVRLMQLYEELFARYGIKVGQILLTRDDFSDRRRYLNARNTLSALLELGVVPIIN---ENDTVATEEIKFGDNDTL  154 (369)
T ss_pred             HHhCHHHHHHHHHHHHHhcCCeeeEEEeehhhhhhHHHHHHHHHHHHHHHHCCceeeec---CCCceeeeeeeecCCchH
Confidence            999999999988   88898876  66777777665555553 5788899999999993   233222        9999


Q ss_pred             HHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCH--HHHHh----------hccccchHHHHHHHHhCCCCEE
Q psy3759         563 AALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIR  630 (844)
Q Consensus       563 Aa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~  630 (844)
                      ||++|.+++||.|++||||||+||+||+.+|+|++|++++.  .++..          +|||.+|+.|+++|.+.|++++
T Consensus       155 sA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~i  234 (369)
T COG0263         155 SALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVI  234 (369)
T ss_pred             HHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEE
Confidence            99999999999999999999999999999999999999864  33433          7999999999999999999999


Q ss_pred             EEecCCcchHHHHHcCCcccEEEEec
Q psy3759         631 VFSIIKSGALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       631 I~~g~~~~~i~~~l~Ge~~GT~I~~~  656 (844)
                      |++|..|+.+.+++.|+..||+|.|.
T Consensus       235 I~~g~~~~~i~~~~~~~~~GT~F~~~  260 (369)
T COG0263         235 IASGSKPDVILDALEGEAVGTLFEPQ  260 (369)
T ss_pred             EecCCCcchHHHHHhCCCCccEEecC
Confidence            99999999999999999999999976

>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis

Probab=99.96  E-value=1.8e-28  Score=263.31  Aligned_cols=231  Identities=16%  Similarity=0.127  Sum_probs=180.0

Q ss_pred             hhhHHHHHHHhhhhhhhcCCCC-cccchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhcccccc-----------CC-
Q psy3759         420 EYSLAVLKAQQLGEALMKGDAY-NINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQ-----------NI-  485 (844)
Q Consensus       420 e~~~iv~k~~~~~~~l~~g~~~-~id~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~-----------~~-  485 (844)
                      +++++|+|+  + ++++++++. .++.+.+..++++|+.|++.|+++|||+|| |...+.+.....           +. 
T Consensus         7 ~~~~iVvKi--G-ss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~   83 (284)
T cd04256           7 HAKRIVVKL--G-SAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQ   83 (284)
T ss_pred             cCCEEEEEe--C-chhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhccccc
Confidence            357889996  4 445544433 799999999999999999999999966666 444444333211           11 


Q ss_pred             ---CcchHHHHHHHHHHHHHHHHHHH---HHHcCCce--eEeehhchhhh-hhccchHHHHHHHhCCCEEEEeCCCC---
Q psy3759         486 ---DRSTADYMGMLATIINSLALFDI---LNKSGIIS--HVMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIG---  553 (844)
Q Consensus       486 ---~~~~~~~~~~~~~~~~~~ll~~~---L~~~gi~a--~~l~~~~~~~~-~~~~~~~~l~~lL~~g~VPVv~G~~G---  553 (844)
                         .+......+++++.++..++..|   |..+|+++  +.++..++... ........+..+|+.|+|||++|+..   
T Consensus        84 ~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~~q~llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~  163 (284)
T cd04256          84 LKDMPQMELDGRACAAVGQSGLMALYEAMFTQYGITVAQVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSP  163 (284)
T ss_pred             ccCCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcHHHeeeeccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCcccc
Confidence               24556667888888888888887   88888876  33444444322 22234568888999999999986222   


Q ss_pred             -----------CCCCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh----------hccc
Q psy3759         554 -----------NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLE  612 (844)
Q Consensus       554 -----------~~~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~----------~G~~  612 (844)
                                 +..+++|++|+++|..++||+|+++|||||||++||+ +|++++|++++..+...          +|||
T Consensus       164 ~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM  242 (284)
T cd04256         164 PPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGM  242 (284)
T ss_pred             cccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCc
Confidence                       1225799999999999999999999999999999997 69999999998766532          6899


Q ss_pred             cchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         613 IMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       613 v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      .+|+.|+..|.++|++++|++|..|++|.+++.|+.+||+|.
T Consensus       243 ~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~~  284 (284)
T cd04256         243 EAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT  284 (284)
T ss_pred             HHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEeC
Confidence            999999999999999999999999999999999999999983

G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.

>PTZ00489 glutamate 5-kinase; Provisional

Probab=99.96  E-value=3.2e-28  Score=257.93  Aligned_cols=229  Identities=18%  Similarity=0.258  Sum_probs=176.1

Q ss_pred             hhhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHH
Q psy3759         420 EYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATI  499 (844)
Q Consensus       420 e~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (844)
                      ..+|+|+|+  ++ +++++++ .++...+..++++++++.+ ++++||||||| .++++...  ++........+++++.
T Consensus         7 ~~~riVIKl--G~-Svit~~~-~~~~~~~~~l~~~i~~l~~-~~~vilVssGa-va~g~~~~--~~~~~~~~~~qa~aai   78 (264)
T PTZ00489          7 SVKRIVVKV--GS-SILVDNQ-EIAAHRIEALCRFIADLQT-KYEVILVTSGA-VAAGYTKK--EMDKSYVPNKQALASM   78 (264)
T ss_pred             cCCEEEEEe--cc-ceeeCCC-CcCHHHHHHHHHHHHHHhc-CCeEEEEecCh-HhcChhhc--CCCccccHHHHHHHHh
Confidence            356788995  44 4665543 5788889999999999976 79999999776 55554422  2223334456777777


Q ss_pred             HHHHHHHHH---HHHcCCceeE--eehhchhhhhhc-cchHHHHHHHhCCCEEEEeCCCCCCC-----CcchHHHHHHHH
Q psy3759         500 INSLALFDI---LNKSGIISHV--MSAISIEKFLES-YIPLNAIKYLEEGKVVIFAGGIGNPF-----FTTDTTAALRAA  568 (844)
Q Consensus       500 ~~~~ll~~~---L~~~gi~a~~--l~~~~~~~~~~~-~~~~~l~~lL~~g~VPVv~G~~G~~~-----~s~D~lAa~lA~  568 (844)
                      +|..++..|   |..+|+.+..  ++..++...... ...+.+..+|++|+|||++|..-.+.     .+||++|+++|.
T Consensus        79 Gq~~L~~~y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~  158 (264)
T PTZ00489         79 GQPLLMHMYYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLSALVAH  158 (264)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHH
Confidence            777777766   8889988743  333343332222 23567889999999999987332222     269999999999


Q ss_pred             HcCCcEEEEeecccccccCCCCCCCCcee---ecccCHHHHHh---------hccccchHHHHHHHHhCCCCEEEEecCC
Q psy3759         569 EIKAEIILKATKVDGIYNSDPNKCLSAII---YKKITFDEVIS---------KKLEIMDSTAFSFCRDQKLPIRVFSIIK  636 (844)
Q Consensus       569 ~l~Ad~LiilTDVdGVyt~dP~~~~~a~~---I~~i~~~e~~~---------~G~~v~~~~Aa~~a~~~gi~v~I~~g~~  636 (844)
                      .++||+|+++|||||||++||+.+|+|++   +++++.++...         +|||.+|+.||..|.+.|++++|++|.+
T Consensus       159 ~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~  238 (264)
T PTZ00489        159 HFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFH  238 (264)
T ss_pred             HhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            99999999999999999999999999988   67777765521         7999999999999999999999999999


Q ss_pred             cchHHHHHcCC--cccEEEEec
Q psy3759         637 SGALKRVIEGK--NEGTLVYEI  656 (844)
Q Consensus       637 ~~~i~~~l~Ge--~~GT~I~~~  656 (844)
                      |++|.+++.|+  ..||+|.|.
T Consensus       239 ~~~i~~~l~g~~~~~GT~~~~~  260 (264)
T PTZ00489        239 LEKARDFLIGGSHEIGTLFYPR  260 (264)
T ss_pred             chHHHHHHcCCCCCCceEEeec
Confidence            99999999875  379999874

>PRK12314 gamma-glutamyl kinase; Provisional

Probab=99.96  E-value=3.1e-28  Score=259.93  Aligned_cols=231  Identities=17%  Similarity=0.185  Sum_probs=173.1

Q ss_pred             hhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhccccccCCCcchHHHHHHHHHH
Q psy3759         421 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNIDRSTADYMGMLATI  499 (844)
Q Consensus       421 ~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (844)
                      .+++|+|+  +|++++ ++...++.+.+++++++|+++++.|+++|||+|| |...+...... . .+......+++++.
T Consensus         9 ~~~iViK~--Ggs~l~-~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~-~-~~~~~~~~~a~aa~   83 (266)
T PRK12314          9 AKRIVIKV--GSSTLS-YENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLD-K-RPTSLAEKQALAAV   83 (266)
T ss_pred             CCEEEEEe--CCCeee-CCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccc-c-CCCCHHHHHHHHHH
Confidence            45678886  666555 4556789999999999999999999999998555 54444333322 1 12223333444444


Q ss_pred             HH---HHHHHHHHHHcCCce--eEeehhchhhh-hhccchHHHHHHHhCCCEEEEeCCC-----CCC--CCcchHHHHHH
Q psy3759         500 IN---SLALFDILNKSGIIS--HVMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGI-----GNP--FFTTDTTAALR  566 (844)
Q Consensus       500 ~~---~~ll~~~L~~~gi~a--~~l~~~~~~~~-~~~~~~~~l~~lL~~g~VPVv~G~~-----G~~--~~s~D~lAa~l  566 (844)
                      ++   ..++..+|..+|+++  +.++..++... ......+.+..+++.|+|||+++..     +..  ..++|++|+++
T Consensus        84 Gq~~l~~~~~~~~~~~g~~~~q~llT~~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~l  163 (266)
T PRK12314         84 GQPELMSLYSKFFAEYGIVVAQILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAIV  163 (266)
T ss_pred             hHHHHHHHHHHHHHHcCCeEEEEEEecccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHHH
Confidence            43   444555699999987  23444444322 1122356888899999999998511     111  34599999999


Q ss_pred             HHHcCCcEEEEeecccccccCCCCCCCCceeecccCH--HHHHh----------hccccchHHHHHHHHhCCCCEEEEec
Q psy3759         567 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSI  634 (844)
Q Consensus       567 A~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~~g  634 (844)
                      |.+++||.|+|+|||||||++||+.+|+|++|+.+++  .+..+          +|||++|+.|+..|.++|++++|+||
T Consensus       164 A~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g  243 (266)
T PRK12314        164 AKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANG  243 (266)
T ss_pred             HHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcC
Confidence            9999999999999999999999999999999998874  33322          37999999999999999999999999


Q ss_pred             CCcchHHHHHcCCcccEEEEec
Q psy3759         635 IKSGALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       635 ~~~~~i~~~l~Ge~~GT~I~~~  656 (844)
                      +.|++|.+++.|+.+||+|.|.
T Consensus       244 ~~~~~i~~~l~g~~~GT~i~~~  265 (266)
T PRK12314        244 FNPSDILDFLEGESIGTLFAPK  265 (266)
T ss_pred             CCchHHHHHHcCCCCceEEccC
Confidence            9999999999999899999863

>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=99.96  E-value=3.3e-28  Score=253.70  Aligned_cols=209  Identities=27%  Similarity=0.397  Sum_probs=174.5

Q ss_pred             HHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhcccccc--CCCcchHHHHHHHHHHHH
Q psy3759         424 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRSTADYMGMLATIIN  501 (844)
Q Consensus       424 iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  501 (844)
                      +|+|+  +|+.+ +++.   +.+.+++++++|+++.+ |++++||||||++++.+.....  +.+....++.++..+.++
T Consensus         2 iViKl--GGs~l-~~~~---~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln   74 (221)
T cd04253           2 IVISL--GGSVL-APEK---DADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLN   74 (221)
T ss_pred             EEEEe--cccee-CCCC---ChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHH
Confidence            46675  66644 3332   77889999999998865 7899999999988887655432  234446788899988888


Q ss_pred             HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecc
Q psy3759         502 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV  581 (844)
Q Consensus       502 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTDV  581 (844)
                      ..++...+. .|++++.+            +.+.+.++++.|.|||++|+.  +++|+|++|+++|..++||+|+++|||
T Consensus        75 ~~~~~~~l~-~~~~~~~~------------~~~~~~~~l~~g~vpv~~G~~--~~~s~D~~a~~lA~~l~a~~li~~tdV  139 (221)
T cd04253          75 ARLLIAALG-DAYPPVPT------------SYEEALEAMFTGKIVVMGGTE--PGQSTDAVAALLAERLGADLLINATNV  139 (221)
T ss_pred             HHHHHHHHh-cCCCcCCC------------CHHHHHHHHHcCCeEEEECCC--CCCccHHHHHHHHHHcCCCEEEEEeCC
Confidence            888877776 67765433            345677889999999999975  578999999999999999999999999


Q ss_pred             cccccCCCCCCCCceeecccCHHHHHh---h-----cc-ccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEE
Q psy3759         582 DGIYNSDPNKCLSAIIYKKITFDEVIS---K-----KL-EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTL  652 (844)
Q Consensus       582 dGVyt~dP~~~~~a~~I~~i~~~e~~~---~-----G~-~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~  652 (844)
                      ||||++||+.+|++++|++++++++.+   .     |+ +.+|++|++++.++|++++|+||.+|++|.++|.|+.+||+
T Consensus       140 dGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~  219 (221)
T cd04253         140 DGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTI  219 (221)
T ss_pred             CeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeE
Confidence            999999999999999999999988866   1     33 67899999999999999999999999999999999999999


Q ss_pred             EE
Q psy3759         653 VY  654 (844)
Q Consensus       653 I~  654 (844)
                      |.
T Consensus       220 I~  221 (221)
T cd04253         220 IE  221 (221)
T ss_pred             eC
Confidence            84

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi

>PRK13402 gamma-glutamyl kinase; Provisional

Probab=99.96  E-value=3.9e-28  Score=268.28  Aligned_cols=232  Identities=16%  Similarity=0.182  Sum_probs=175.5

Q ss_pred             hhhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHH
Q psy3759         420 EYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATI  499 (844)
Q Consensus       420 e~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (844)
                      +.+++|+|+  +++++. +..+.++++.+..++++|++|++.|+++||||||| .+.+...... .........+++++.
T Consensus         4 ~~kriVIKi--Ggs~L~-~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGa-va~G~~~l~~-~~~~~~~~~qalaav   78 (368)
T PRK13402          4 NWKRIVVKV--GSSLLT-PHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGA-VAAGYHKLGF-IDRPSVPEKQAMAAA   78 (368)
T ss_pred             CCcEEEEEE--chhhcc-CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCh-hhcCccccCC-CCCCCccHHHHHHHh
Confidence            346789996  666555 45567999999999999999999999999999997 2222211110 111123334555555


Q ss_pred             HHHHH---HHHHHHHcCCceeEe--ehhchhhhhhcc-chHHHHHHHhCCCEEEEeCCCCCC-----CCcchHHHHHHHH
Q psy3759         500 INSLA---LFDILNKSGIISHVM--SAISIEKFLESY-IPLNAIKYLEEGKVVIFAGGIGNP-----FFTTDTTAALRAA  568 (844)
Q Consensus       500 ~~~~l---l~~~L~~~gi~a~~l--~~~~~~~~~~~~-~~~~l~~lL~~g~VPVv~G~~G~~-----~~s~D~lAa~lA~  568 (844)
                      ++..+   +...|..+|+++..+  +..++....... -...+..+|+.|+|||++++....     ..+||++|+++|.
T Consensus        79 Gq~~l~~~~~~~f~~~g~~~aqvLlT~~d~~~~~~y~n~~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~  158 (368)
T PRK13402         79 GQGLLMATWSKLFLSHGFPAAQLLLTHGDLRDRERYINIRNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAA  158 (368)
T ss_pred             hHHHHHHHHHHHHHHCCCeEEEEEEecchhhhHHHHHHHHHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHH
Confidence            55444   445599999998644  444442111111 136888899999999998522111     1248999999999


Q ss_pred             HcCCcEEEEeecccccccCCCCCCCCceeecccCH--HHHHh----------hccccchHHHHHHHHhCCCCEEEEecCC
Q psy3759         569 EIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIK  636 (844)
Q Consensus       569 ~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~~g~~  636 (844)
                      +++||.|+|+||||||||+||+.+|++++|+++++  +++..          +|||.+|+.|+..|.++|++++|+||..
T Consensus       159 ~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~  238 (368)
T PRK13402        159 LADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFT  238 (368)
T ss_pred             HhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCC
Confidence            99999999999999999999999999999999985  44432          6889999999999999999999999999


Q ss_pred             cchHHHHHcCCcccEEEEec
Q psy3759         637 SGALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       637 ~~~i~~~l~Ge~~GT~I~~~  656 (844)
                      |+.|.+++.|+..||+|.+.
T Consensus       239 ~~~l~~~l~g~~~GT~i~~~  258 (368)
T PRK13402        239 ADIFNQLLKGQNPGTYFTPE  258 (368)
T ss_pred             chHHHHHhcCCCCceEEecC
Confidence            99999999999999999986

>TIGR02076 pyrH_arch uridylate kinase, putative

Probab=99.95  E-value=1.5e-27  Score=248.88  Aligned_cols=209  Identities=26%  Similarity=0.382  Sum_probs=173.9

Q ss_pred             HHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhcccccc--CCCcchHHHHHHHHHHHHH
Q psy3759         425 VLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRSTADYMGMLATIINS  502 (844)
Q Consensus       425 v~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  502 (844)
                      |+|+  +|+. ++++.   +.+.+++++++|+++.+. ++++||||||+.++.+.....  +......++.++..+..+.
T Consensus         2 ViKl--GGs~-l~~~~---~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~   74 (221)
T TIGR02076         2 VISL--GGSV-LSPEI---DAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNA   74 (221)
T ss_pred             EEEe--chhh-cCCCC---CHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHH
Confidence            4554  5554 44442   788999999999998876 899999999988876644332  3345567889999888888


Q ss_pred             HHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccc
Q psy3759         503 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD  582 (844)
Q Consensus       503 ~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s~D~lAa~lA~~l~Ad~LiilTDVd  582 (844)
                      .++...|...+++++..            +.....+.+..|.+||++|+.  +++++|++|+++|.+++||+|+++||||
T Consensus        75 ~~l~~ll~~~~~~~~~~------------~~~~~~~~l~~g~ipv~~G~~--~~~s~D~~A~~lA~~l~A~~li~ltdVd  140 (221)
T TIGR02076        75 MLLIAALGDDAYPKVPE------------NFEEALEAMSLGKIVVMGGTH--PGHTTDAVAALLAEFSKADLLINATNVD  140 (221)
T ss_pred             HHHHHHHHhcCCCCcCC------------CHHHHHHHHHcCCEEEEcCCC--CCCCcHHHHHHHHHHcCCCEEEEEeCCC
Confidence            88888887777775532            234446778999999999974  7899999999999999999999999999


Q ss_pred             ccccCCCCCCCCceeecccCHHHHHh--------hc-cccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEE
Q psy3759         583 GIYNSDPNKCLSAIIYKKITFDEVIS--------KK-LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV  653 (844)
Q Consensus       583 GVyt~dP~~~~~a~~I~~i~~~e~~~--------~G-~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I  653 (844)
                      |||++||+.+|++++|++++++++.+        .| +|.+|++|++++.+.|++++|+||..|+++.+++.|+..||+|
T Consensus       141 Gvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i  220 (221)
T TIGR02076       141 GVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII  220 (221)
T ss_pred             cccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEe
Confidence            99999999999999999999988766        13 5678999999999999999999999999999999999899998


Q ss_pred             E
Q psy3759         654 Y  654 (844)
Q Consensus       654 ~  654 (844)
                      .
T Consensus       221 ~  221 (221)
T TIGR02076       221 E  221 (221)
T ss_pred             C
Confidence            3

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.

>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

Probab=99.95  E-value=2.6e-27  Score=251.58  Aligned_cols=226  Identities=18%  Similarity=0.192  Sum_probs=169.1

Q ss_pred             HHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhccccccCCCcchHHH-HHHHHHHH-
Q psy3759         424 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNIDRSTADY-MGMLATII-  500 (844)
Q Consensus       424 iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-  500 (844)
                      +|+|+  +|+++. +.+..++.+.+.+++++|++++..|+++|||||| |...+........  +..... ..+++.|+ 
T Consensus         2 iViK~--GGs~i~-~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~~~~~~--~~~~~~~~~~~~~Gq~   76 (251)
T cd04242           2 IVVKV--GSSLLT-DEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRLGLEKR--PKTLPEKQALAAVGQS   76 (251)
T ss_pred             EEEEe--CCCeee-CCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChhhhccCcC--CCchhHHHHHHHHhHH
Confidence            46675  666554 4433468899999999999999999999999987 4443332222211  112222 23333333 


Q ss_pred             -HHHHHHHHHHHcCCceeE--eehhchhhhhhc-cchHHHHHHHhCCCEEEEeCCCC-----CCCCcchHHHHHHHHHcC
Q psy3759         501 -NSLALFDILNKSGIISHV--MSAISIEKFLES-YIPLNAIKYLEEGKVVIFAGGIG-----NPFFTTDTTAALRAAEIK  571 (844)
Q Consensus       501 -~~~ll~~~L~~~gi~a~~--l~~~~~~~~~~~-~~~~~l~~lL~~g~VPVv~G~~G-----~~~~s~D~lAa~lA~~l~  571 (844)
                       ...++...|..+|+++..  ++..++...... ...+.+..+++.|+|||+++...     ..+.++|++|+++|.+|+
T Consensus        77 ~l~~~~~~~l~~~Gi~~~q~l~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~  156 (251)
T cd04242          77 LLMALYEQLFAQYGIKVAQILLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVN  156 (251)
T ss_pred             HHHHHHHHHHHHcCCeEEEEEEehhHhcchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHHHcC
Confidence             344566779999999854  333333211111 12467888899999999985211     123569999999999999


Q ss_pred             CcEEEEeecccccccCCCCCCCCceeecccC--HHHHHh----------hccccchHHHHHHHHhCCCCEEEEecCCcch
Q psy3759         572 AEIILKATKVDGIYNSDPNKCLSAIIYKKIT--FDEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGA  639 (844)
Q Consensus       572 Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~--~~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~  639 (844)
                      ||+|+|+|||||||++||+.+|++++|++++  ++++.+          +|+|.+|+.|+..+.++|++++|+||..|++
T Consensus       157 Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~  236 (251)
T cd04242         157 ADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDV  236 (251)
T ss_pred             CCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCH
Confidence            9999999999999999999999999999999  777644          5789999999999999999999999999999


Q ss_pred             HHHHHcCCcccEEEE
Q psy3759         640 LKRVIEGKNEGTLVY  654 (844)
Q Consensus       640 i~~~l~Ge~~GT~I~  654 (844)
                      |.+++.|+..||+|.
T Consensus       237 i~~~l~g~~~GT~i~  251 (251)
T cd04242         237 LLDILAGEAVGTLFL  251 (251)
T ss_pred             HHHHHcCCCCCeEeC
Confidence            999999999999984

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir

>PRK05429 gamma-glutamyl kinase; Provisional

Probab=99.95  E-value=3e-27  Score=263.67  Aligned_cols=232  Identities=22%  Similarity=0.222  Sum_probs=176.4

Q ss_pred             hhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHH
Q psy3759         421 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII  500 (844)
Q Consensus       421 ~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (844)
                      .+++|+|+  +|+++. ++++.++++.+.+++++|+++++.|+++||||||+ ...+.........+......+++++.+
T Consensus         8 ~~~iVIKi--GGs~l~-~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGa-i~~g~~~l~l~~~~~~~~~~qa~aavG   83 (372)
T PRK05429          8 ARRIVVKV--GSSLLT-GGGGGLDRARIAELARQIAALRAAGHEVVLVSSGA-VAAGRERLGLPERPKTLAEKQAAAAVG   83 (372)
T ss_pred             CCEEEEEe--Chhhcc-CCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccH-hhhhHhhcCCCCCCCchHHHHHHHHHh
Confidence            46788996  665554 55678999999999999999999999999999884 222211111011122333344555444


Q ss_pred             HHH---HHHHHHHHcCCceeEe--ehhchhhhhhccc-hHHHHHHHhCCCEEEEeCCCC-----CCCCcchHHHHHHHHH
Q psy3759         501 NSL---ALFDILNKSGIISHVM--SAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIG-----NPFFTTDTTAALRAAE  569 (844)
Q Consensus       501 ~~~---ll~~~L~~~gi~a~~l--~~~~~~~~~~~~~-~~~l~~lL~~g~VPVv~G~~G-----~~~~s~D~lAa~lA~~  569 (844)
                      +..   .+...|..+|+++..+  +..++.......+ ...+..+++.|+|||+++...     ....++|++|++||.+
T Consensus        84 q~~L~~~~~~~l~~~gi~~~qil~t~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~~  163 (372)
T PRK05429         84 QSRLMQAYEELFARYGITVAQILLTRDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVANL  163 (372)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEeehhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHHHHHH
Confidence            444   4456699999998654  5544432223334 467888899999999985221     1235699999999999


Q ss_pred             cCCcEEEEeecccccccCCCCCCCCceeecccCH--HHHHh----------hccccchHHHHHHHHhCCCCEEEEecCCc
Q psy3759         570 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKS  637 (844)
Q Consensus       570 l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~  637 (844)
                      ++||.|+|+|||||||++||+.+|++++|+++++  +++.+          +|+|.+|+.|+..|.++|++++|+||..|
T Consensus       164 l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~  243 (372)
T PRK05429        164 VEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGREP  243 (372)
T ss_pred             cCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCc
Confidence            9999999999999999999999999999999976  44433          57899999999999999999999999999


Q ss_pred             chHHHHHcCCcccEEEEec
Q psy3759         638 GALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       638 ~~i~~~l~Ge~~GT~I~~~  656 (844)
                      +++.+++.|+..||+|.+.
T Consensus       244 ~~l~~~l~g~~~GT~i~~~  262 (372)
T PRK05429        244 DVLLRLLAGEAVGTLFLPQ  262 (372)
T ss_pred             cHHHHHhcCCCCCEEEeeC
Confidence            9999999999999999986

>TIGR01027 proB glutamate 5-kinase

Probab=99.95  E-value=4e-27  Score=261.59  Aligned_cols=229  Identities=20%  Similarity=0.185  Sum_probs=172.8

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHh-hhccccccCCCcchHHHHHHHHHHHH
Q psy3759         423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNIC-RGISNKIQNIDRSTADYMGMLATIIN  501 (844)
Q Consensus       423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (844)
                      ++|+|+  +|+++. +....++.+.+..++++|+++++.|+++|||||||... +......  -.+..+...+.+++.++
T Consensus         2 riVIKi--Ggs~l~-~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~~~g~~~lg~~--~~~~~l~~~qa~aa~Gq   76 (363)
T TIGR01027         2 RIVVKV--GSSSLT-GSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGAIAAGFEALGLP--ERPKTLAEKQALAAVGQ   76 (363)
T ss_pred             eEEEEe--ccceEe-CCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHHhcCccccCCC--CCccchHHHHHHHHhCh
Confidence            467775  555544 44444899999999999999999999999999997332 2212211  12333444455555555


Q ss_pred             HHHHH---HHHHHcCCceeE--eehhchhhhhhccch-HHHHHHHhCCCEEEEeCCC-----CCCCCcchHHHHHHHHHc
Q psy3759         502 SLALF---DILNKSGIISHV--MSAISIEKFLESYIP-LNAIKYLEEGKVVIFAGGI-----GNPFFTTDTTAALRAAEI  570 (844)
Q Consensus       502 ~~ll~---~~L~~~gi~a~~--l~~~~~~~~~~~~~~-~~l~~lL~~g~VPVv~G~~-----G~~~~s~D~lAa~lA~~l  570 (844)
                      ..++.   ..|..+|+++..  ++..++.......+. ..+..+++.|.|||++.+.     +....++|++|+++|.++
T Consensus        77 ~~l~~~~~~~l~~~Gi~~aqillt~~d~~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l  156 (363)
T TIGR01027        77 VRLMQLYEQLFSQYGIKVAQILLTRADFSDRERYLNARNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILV  156 (363)
T ss_pred             HHHHHHHHHHHHHcCCeEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHHHc
Confidence            55444   559999999733  334344332222333 6788889999999997321     112346999999999999


Q ss_pred             CCcEEEEeecccccccCCCCCCCCceeecccCHH--HHHh----------hccccchHHHHHHHHhCCCCEEEEecCCcc
Q psy3759         571 KAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD--EVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSG  638 (844)
Q Consensus       571 ~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~--e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~  638 (844)
                      +||.|+|+|||||||++||+.+|+|++|++++..  +...          +|||.+|+.|+..|.+.|++++|+||..|+
T Consensus       157 ~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~  236 (363)
T TIGR01027       157 GADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPE  236 (363)
T ss_pred             CCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            9999999999999999999999999999999753  2211          678999999999999999999999999999


Q ss_pred             hHHHHHcCCcccEEEEec
Q psy3759         639 ALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       639 ~i~~~l~Ge~~GT~I~~~  656 (844)
                      +|.+++.|+..||+|.+.
T Consensus       237 ~l~~~l~g~~~GT~i~~~  254 (363)
T TIGR01027       237 KIADALEGAPVGTLFHAQ  254 (363)
T ss_pred             HHHHHhcCCCCcEEEeeC
Confidence            999999999899999985

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.

>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms

Probab=99.94  E-value=3.7e-27  Score=251.09  Aligned_cols=222  Identities=18%  Similarity=0.200  Sum_probs=173.9

Q ss_pred             HHHHHHhhhhhhhcC-CCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc---c---CCCcchHHHHHHH
Q psy3759         424 AVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI---Q---NIDRSTADYMGML  496 (844)
Q Consensus       424 iv~k~~~~~~~l~~g-~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~---~---~~~~~~~~~~~~~  496 (844)
                      +|+|+  +|+.+... .+..++.+.++++++++++++  |+++|||||||.+.+......   .   ..++..+...+..
T Consensus         2 iVIKi--GGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~~~g~~~g~~~~~~~~l~~~~~~   77 (252)
T cd04241           2 IILKL--GGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEYGLPDGDGSFSAEGVAETHEA   77 (252)
T ss_pred             EEEEE--eceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHHHHhCCCcCCCchhhhhHHHHHHH
Confidence            35664  45444332 356789999999999999887  999999999987655433321   1   1233444444443


Q ss_pred             HHHHHHHHHHHHHHHcCCceeEeehhchhh----hhhccchHHHHHHHhCCCEEEEeCCCC------CCCCcchHHHHHH
Q psy3759         497 ATIINSLALFDILNKSGIISHVMSAISIEK----FLESYIPLNAIKYLEEGKVVIFAGGIG------NPFFTTDTTAALR  566 (844)
Q Consensus       497 ~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~----~~~~~~~~~l~~lL~~g~VPVv~G~~G------~~~~s~D~lAa~l  566 (844)
                      .. ..+..+.++|..+|+++.++++.++..    ....++.+.+..+++.|+|||++|..+      ..++++|++|+.+
T Consensus        78 ~~-~ln~~~~~~l~~~g~~a~~l~~~~~~~~~~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~l  156 (252)
T cd04241          78 ML-ELNSIVVDALLEAGVPAVSVPPSSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVEL  156 (252)
T ss_pred             HH-HHHHHHHHHHHHCCCCeEEEChHHeEEecCCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHHH
Confidence            33 445567888999999999998877521    244677899999999999999987321      1246799999999


Q ss_pred             HHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh------------hccccchHHHHHHHHhCCCCEEEEec
Q psy3759         567 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS------------KKLEIMDSTAFSFCRDQKLPIRVFSI  634 (844)
Q Consensus       567 A~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~------------~G~~v~~~~Aa~~a~~~gi~v~I~~g  634 (844)
                      |.+++||+|+++|||||||++||   |++++|++++.+++.+            +|||..|+.++..|.++|++++|++|
T Consensus       157 A~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~g  233 (252)
T cd04241         157 AKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNG  233 (252)
T ss_pred             HHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEeC
Confidence            99999999999999999999999   7899999998744322            58999999999999999999999999


Q ss_pred             CCcchHHHHHcCCcccEEE
Q psy3759         635 IKSGALKRVIEGKNEGTLV  653 (844)
Q Consensus       635 ~~~~~i~~~l~Ge~~GT~I  653 (844)
                      ..|+++.+++.|+.+||+|
T Consensus       234 ~~~~~l~~~l~g~~~GT~i  252 (252)
T cd04241         234 DKPENLYRALLGNFIGTRI  252 (252)
T ss_pred             CCHHHHHHHHcCCCCceEC
Confidence            9999999999999899986

Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

Probab=99.94  E-value=1.3e-26  Score=246.30  Aligned_cols=208  Identities=23%  Similarity=0.300  Sum_probs=174.6

Q ss_pred             chhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc---------cCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy3759         445 SSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI---------QNIDRSTADYMGMLATIINSLALFDILNKSGII  515 (844)
Q Consensus       445 ~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~  515 (844)
                      .+.+++++++|+.+.+.|+++|||||||..........         ...+....+.....+.+..+.++.++|.++|++
T Consensus        12 ~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~   91 (248)
T cd02115          12 EERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLLIAAALEQHGIK   91 (248)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            36789999999999888999999999985444322221         123344555666666677899999999999999


Q ss_pred             eeEeehhchhh---------hhhccchHHHHHHHhCCCEEEEeCCCCCC--------CCcchHHHHHHHHHcCCcEEEEe
Q psy3759         516 SHVMSAISIEK---------FLESYIPLNAIKYLEEGKVVIFAGGIGNP--------FFTTDTTAALRAAEIKAEIILKA  578 (844)
Q Consensus       516 a~~l~~~~~~~---------~~~~~~~~~l~~lL~~g~VPVv~G~~G~~--------~~s~D~lAa~lA~~l~Ad~Liil  578 (844)
                      +..+++.+...         ....++.+.+..+++.|.|||++|+.+.+        +.++|++|+.+|.+|+||+|+++
T Consensus        92 a~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~  171 (248)
T cd02115          92 AVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVIL  171 (248)
T ss_pred             eEEEchHHcCeEeCCCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHHHHcCCCEEEEE
Confidence            99998876522         24456788999999999999999965432        46699999999999999999999


Q ss_pred             ecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEE
Q psy3759         579 TKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV  653 (844)
Q Consensus       579 TDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I  653 (844)
                      |||||||++||+.+|++++|++++++|+.+   .|+|+.|+.++..+.++|++++|+|+..|+.+ +++.++..||+|
T Consensus       172 tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l-~~~~~~~~GT~I  248 (248)
T cd02115         172 TDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI  248 (248)
T ss_pred             ecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccc-cccCCCCCCCCC
Confidence            999999999999999999999999987766   78999999999999999999999999999999 999898899986

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.

>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

Probab=99.94  E-value=1.9e-26  Score=243.48  Aligned_cols=201  Identities=23%  Similarity=0.302  Sum_probs=159.6

Q ss_pred             cchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhccccc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy3759         444 NSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI----QNIDRSTADYMGMLATIINSLALFDILNKSGIISHV  518 (844)
Q Consensus       444 d~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~  518 (844)
                      +.+.+++++++|..+.+.|+++|||||| |.....+....    ...+...++.+.......+..+++..|+.+|++++.
T Consensus        13 ~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~   92 (239)
T cd04261          13 SIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQVSIALLAMALNRLGIKAIS   92 (239)
T ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence            5678999999999999899999999998 43322222111    112333444433333344666788899999999999


Q ss_pred             eehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC------CC---cchHHHHHHHHHcCCcEEEEeec
Q psy3759         519 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP------FF---TTDTTAALRAAEIKAEIILKATK  580 (844)
Q Consensus       519 l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~------~~---s~D~lAa~lA~~l~Ad~LiilTD  580 (844)
                      +++.+....         ....+.+.+..++++|.|||++|+.|.+      ++   ++|++|+.+|.+|+||+|+++||
T Consensus        93 l~~~~~~l~~~~~~~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~td  172 (239)
T cd04261          93 LTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTD  172 (239)
T ss_pred             echhhCCEEecCCCCcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeC
Confidence            998875221         2234568899999999999999975432      12   59999999999999999999999


Q ss_pred             ccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         581 VDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       581 VdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      |||||++||+.+|++++|++++++|+.+   .|.+++|+.|+.+|.++|+|++|.|+++|+          .||+|+
T Consensus       173 V~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~----------~gt~i~  239 (239)
T cd04261         173 VDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE----------PGTLIT  239 (239)
T ss_pred             CCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC----------CCcEeC
Confidence            9999999999999999999999998877   799999999999999999999999999872          699984

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and

>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

Probab=99.94  E-value=1.9e-26  Score=243.48  Aligned_cols=201  Identities=25%  Similarity=0.332  Sum_probs=160.8

Q ss_pred             cchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhccccc---c-CCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy3759         444 NSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI---Q-NIDRSTADYMGMLATIINSLALFDILNKSGIISHV  518 (844)
Q Consensus       444 d~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~  518 (844)
                      +++.+++++++|+.+.+.|+++|||||| |.....+....   . ..+...++.+.++.+..++.+++..|+++|++++.
T Consensus        13 ~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~   92 (239)
T cd04246          13 DIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQISAALLAMALNRLGIKAIS   92 (239)
T ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEE
Confidence            5678999999999999899999999996 43333222211   1 11344555544444455777889999999999999


Q ss_pred             eehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCC---CC---C---cchHHHHHHHHHcCCcEEEEeec
Q psy3759         519 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGN---PF---F---TTDTTAALRAAEIKAEIILKATK  580 (844)
Q Consensus       519 l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~---~~---~---s~D~lAa~lA~~l~Ad~LiilTD  580 (844)
                      +++.+....         +...+.+.+..++++|.|||++|+.|.   +.   +   ++|++|+.+|.+|+||+|+++||
T Consensus        93 l~~~~~~l~~~~~~~~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~td  172 (239)
T cd04246          93 LTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTD  172 (239)
T ss_pred             eccccCCEEecCCCCceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEEC
Confidence            988774211         223466889999999999999997442   11   2   48999999999999999999999


Q ss_pred             ccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         581 VDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       581 VdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      ||||||+||+.+|++++|++++++|+.+   .|++++|+.|+++|.++|+|++|.|+++|+          .||+|+
T Consensus       173 V~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~----------~gt~i~  239 (239)
T cd04246         173 VDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN----------PGTLIT  239 (239)
T ss_pred             CCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC----------CCcEeC
Confidence            9999999999999999999999998877   789999999999999999999999998862          599984

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati

>COG1608 Predicted archaeal kinase [General function prediction only]

Probab=99.94  E-value=1.2e-26  Score=233.33  Aligned_cols=225  Identities=22%  Similarity=0.259  Sum_probs=174.1

Q ss_pred             HHHHHhhhhhhhcC-CCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCC-------CcchHHHHHHH
Q psy3759         425 VLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNI-------DRSTADYMGML  496 (844)
Q Consensus       425 v~k~~~~~~~l~~g-~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~-------~~~~~~~~~~~  496 (844)
                      ++|+  +||.++.. .|..++++.++++|.+|+.  ..=.++|||||||++.|...... ++       ++.-. .....
T Consensus         4 IlKl--GGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~-~~~~~~~~~s~~G~-~~~~~   77 (252)
T COG1608           4 ILKL--GGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEF-GLEGLKNYLSPLGF-SLTHL   77 (252)
T ss_pred             EEEe--cceeeecCCCcchhhHHHHHHHHHHHhc--CCcccEEEEecCccccCHHHHHh-CccccccccCccch-HHHHH
Confidence            4565  56655543 5678899999999999985  11136889999998887655543 22       11222 22223


Q ss_pred             HHHHHHHHHHHHHHHcCCceeEeehhchhhh--hhccc-hHHHHHHHhCCCEEEEeC------CCCCCCCcchHHHHHHH
Q psy3759         497 ATIINSLALFDILNKSGIISHVMSAISIEKF--LESYI-PLNAIKYLEEGKVVIFAG------GIGNPFFTTDTTAALRA  567 (844)
Q Consensus       497 ~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~--~~~~~-~~~l~~lL~~g~VPVv~G------~~G~~~~s~D~lAa~lA  567 (844)
                      ++..-+..+++.|.++|+.++...|.++...  ...+. ...+..+++.|+|||++|      ..|...+|+|.++.+||
T Consensus        78 am~~L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA  157 (252)
T COG1608          78 AMLELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLA  157 (252)
T ss_pred             HHHHHHHHHHHHHHhcCCccccccCcceeecCCceeechHHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHH
Confidence            3444566677888999999987666655211  11223 678899999999999999      23455688999999999


Q ss_pred             HHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHHHhCCCCEEEEecCCcchH
Q psy3759         568 AEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGAL  640 (844)
Q Consensus       568 ~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i  640 (844)
                      ..|++|+++|+|||||||+.||...|+++.++++.......       +|||..|++++....+++.+++++||.+|++|
T Consensus       158 ~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni  237 (252)
T COG1608         158 KELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENI  237 (252)
T ss_pred             HHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHHH
Confidence            99999999999999999999999899999999887643332       89999999999888899999999999999999


Q ss_pred             HHHHcCCcccEEEEe
Q psy3759         641 KRVIEGKNEGTLVYE  655 (844)
Q Consensus       641 ~~~l~Ge~~GT~I~~  655 (844)
                      .++|.|+.+||+|.+
T Consensus       238 ~~~l~G~~vGT~I~~  252 (252)
T COG1608         238 YRALRGENVGTRIDG  252 (252)
T ss_pred             HHHhcCCCCceEecC
Confidence            999999999999863

>KOG1154|consensus

Probab=99.93  E-value=2.2e-26  Score=228.07  Aligned_cols=232  Identities=19%  Similarity=0.179  Sum_probs=175.1

Q ss_pred             hhHHHHHHHhhhhhhhcC-CCCcccchhhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhcccccc-C-----CCcch
Q psy3759         421 YSLAVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ-N-----IDRST  489 (844)
Q Consensus       421 ~~~iv~k~~~~~~~l~~g-~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~-~-----~~~~~  489 (844)
                      ..++|+|+   |++++++ +...+...++..+++++++|+..|++++||+|||    ...+.+..... .     -++..
T Consensus         9 a~rIVVKL---GSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~~~   85 (285)
T KOG1154|consen    9 AYRIVVKL---GSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQSE   85 (285)
T ss_pred             ceEEEEEe---cceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhhhHHHhhhhhccchhHHHhhCCccc
Confidence            45788884   5566555 4455888999999999999999999999999996    22222222210 0     12334


Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHcCCce--eEeehhchhhhhhccc-hHHHHHHHhCCCEEEEeCCCCC-----CCC-
Q psy3759         490 ADYMGMLATIINSLALFDI---LNKSGIIS--HVMSAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIGN-----PFF-  557 (844)
Q Consensus       490 ~~~~~~~~~~~~~~ll~~~---L~~~gi~a--~~l~~~~~~~~~~~~~-~~~l~~lL~~g~VPVv~G~~G~-----~~~-  557 (844)
                      +...++++..+++.+|+-|   |.++|+..  +.++-.|+...-...+ ...+.++|..|.||||......     ++- 
T Consensus        86 l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~iAQvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~~D  165 (285)
T KOG1154|consen   86 LAEKRACAAVGQSGLMALYETLFTQYGITIAQVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPFGD  165 (285)
T ss_pred             hhhHHHHHHhCcchHHHHHHHHHHHhccchheeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccccCC
Confidence            6677777888888888877   88998876  4555555533322222 3578899999999999542211     111 


Q ss_pred             --cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHH-h----------hccccchHHHHHHHHh
Q psy3759         558 --TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-S----------KKLEIMDSTAFSFCRD  624 (844)
Q Consensus       558 --s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~-~----------~G~~v~~~~Aa~~a~~  624 (844)
                        .||++||.+|..++||.|+++|||||+||.+|.. ..+++|+..+..+-. .          +|||-.|+.||..|..
T Consensus       166 ~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~-~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~A~~  244 (285)
T KOG1154|consen  166 SSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDA-DPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNALN  244 (285)
T ss_pred             CCcccHHHHHHHHHhccCEEEEEecccccccCCCCC-CcceeeeeeccCCCCCccccCccCccCcCcchhhHHHHHHHhc
Confidence              1999999999999999999999999999977654 457888777654332 1          7999999999999999


Q ss_pred             CCCCEEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759         625 QKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       625 ~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  656 (844)
                      .|++++|++|..|++|.+++.|..+||.|+..
T Consensus       245 ~Gv~viI~~g~~p~~I~~iv~g~kvgt~f~~~  276 (285)
T KOG1154|consen  245 AGVSVIITNGDAPENITDIVEGKKVGTFFEQL  276 (285)
T ss_pred             CCceEEEeCCCChHHHHHHHhhhhhhhhhhhc
Confidence            99999999999999999999999999999754

>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

Probab=99.93  E-value=2.3e-25  Score=236.39  Aligned_cols=212  Identities=21%  Similarity=0.289  Sum_probs=164.9

Q ss_pred             HHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccc--cccCCCcchHHHHHHHHHHHH
Q psy3759         424 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRSTADYMGMLATIIN  501 (844)
Q Consensus       424 iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  501 (844)
                      +|+|+   |+++++++.    .+.++++|++|+++.. |++++||||||++++.+..  ...+++....+..++.+++++
T Consensus        33 ~ViKi---GGSvitdk~----~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln  104 (262)
T cd04255          33 NVVKI---GGQSIIDRG----AEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQN  104 (262)
T ss_pred             EEEEe---ccceecCCc----HHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            46774   444555542    4689999999999876 7899999999988865442  233556667778888888888


Q ss_pred             HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCC------------CCCCcchHHHHHHHHH
Q psy3759         502 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIG------------NPFFTTDTTAALRAAE  569 (844)
Q Consensus       502 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~~G------------~~~~s~D~lAa~lA~~  569 (844)
                      ..++...|..+|++++.  .         .+...+..+|+.|+|||++|+.+            .++.++|++|+++|.+
T Consensus       105 ~lv~~~~l~~~g~~~i~--~---------~~~~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~  173 (262)
T cd04255         105 AEMLATLLAKHGGSKVG--H---------GDLLQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEV  173 (262)
T ss_pred             HHHHHHHHHHcCCCccc--c---------ccHHHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHH
Confidence            77776778888887631  1         22346888999999999999742            4577899999999999


Q ss_pred             cCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHhh--ccccchHHHHHHHH--hCCCCEEEEecCCcchHHHHHc
Q psy3759         570 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISK--KLEIMDSTAFSFCR--DQKLPIRVFSIIKSGALKRVIE  645 (844)
Q Consensus       570 l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~~--G~~v~~~~Aa~~a~--~~gi~v~I~~g~~~~~i~~~l~  645 (844)
                      ++||.|+++|||||||++||+.+|++++|++++++++.+.  +...++-.+...+.  +..++++|+||..|+++.+++.
T Consensus       174 l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~  253 (262)
T cd04255         174 IGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALR  253 (262)
T ss_pred             hCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHc
Confidence            9999999999999999999999999999999999877652  22223333333333  3346999999999999999999


Q ss_pred             CCcccEEEE
Q psy3759         646 GKNEGTLVY  654 (844)
Q Consensus       646 Ge~~GT~I~  654 (844)
                      |+.+||+|.
T Consensus       254 g~~~GT~i~  262 (262)
T cd04255         254 GEHVGTIIR  262 (262)
T ss_pred             CCCCceEeC
Confidence            999999983

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP

Probab=99.93  E-value=1.8e-25  Score=239.55  Aligned_cols=223  Identities=22%  Similarity=0.261  Sum_probs=170.0

Q ss_pred             HHHHHHhhhhhhhcCC---CCcccchhhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhccccccCCCcchHHHHHHH
Q psy3759         424 AVLKAQQLGEALMKGD---AYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDRSTADYMGML  496 (844)
Q Consensus       424 iv~k~~~~~~~l~~g~---~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~~~~~~~~~~~~~~  496 (844)
                      +++++  +|.++...+   ....+.+.++..+++|+++.+.|++++||||+|    +.+++........++.+++.+.+.
T Consensus         2 ivial--gGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~   79 (308)
T cd04235           2 IVVAL--GGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAM   79 (308)
T ss_pred             EEEEe--cHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcch
Confidence            45566  788887544   256788899999999999999999999999997    777765444333455667777777


Q ss_pred             HHHHHHHHHHHH----HHHcCCceeEeehhchh-----------------hh----------------------------
Q psy3759         497 ATIINSLALFDI----LNKSGIISHVMSAISIE-----------------KF----------------------------  527 (844)
Q Consensus       497 ~~~~~~~ll~~~----L~~~gi~a~~l~~~~~~-----------------~~----------------------------  527 (844)
                      .+|+.+++|+.+    |..+|++....+..+..                 .+                            
T Consensus        80 ~~G~ig~~~~~al~~~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrv  159 (308)
T cd04235          80 SQGMIGYMLQQALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV  159 (308)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceee
Confidence            777777766555    67777765333322110                 00                            


Q ss_pred             ------hhccchHHHHHHHhCCCEEEEeCCCCCCCCc-------------chHHHHHHHHHcCCcEEEEeecccccccCC
Q psy3759         528 ------LESYIPLNAIKYLEEGKVVIFAGGIGNPFFT-------------TDTTAALRAAEIKAEIILKATKVDGIYNSD  588 (844)
Q Consensus       528 ------~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s-------------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~d  588 (844)
                            ..-++.+.+..+|++|+|||++|+.|+|.++             +|++|+++|..++||+|+++|||||||+++
T Consensus       160 V~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~  239 (308)
T cd04235         160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINF  239 (308)
T ss_pred             eCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCC
Confidence                  1113457788899999999999988887533             499999999999999999999999999976


Q ss_pred             CCCCCCceeecccCHHHHHh--------hccccchHHHHH-HHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         589 PNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFS-FCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       589 P~~~~~a~~I~~i~~~e~~~--------~G~~v~~~~Aa~-~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      |  .|++++|++++++++.+        .|+|.+|+.|+. ++.+.+.+++|++   ++++.++|.|+ .||+|.
T Consensus       240 ~--~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i~~aL~G~-~GT~I~  308 (308)
T cd04235         240 G--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGK-AGTVIV  308 (308)
T ss_pred             C--CCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence            5  38999999999988765        589999998875 4555567788865   67899999998 799983

Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).

>TIGR00746 arcC carbamate kinase

Probab=99.93  E-value=5.4e-25  Score=237.45  Aligned_cols=224  Identities=21%  Similarity=0.240  Sum_probs=170.3

Q ss_pred             HHHHHHHhhhhhhhcCC-CC--cccchhhhhhhhhhhhhhhCCCeEEEEeCchHH----hhhccccccCCCcchHHHHHH
Q psy3759         423 LAVLKAQQLGEALMKGD-AY--NINSSIIKNIISEISEIVSCGIELAIVIGGGNI----CRGISNKIQNIDRSTADYMGM  495 (844)
Q Consensus       423 ~iv~k~~~~~~~l~~g~-~~--~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~----~~~~~~~~~~~~~~~~~~~~~  495 (844)
                      |+|+++  +|++++..+ ..  .++...++.+|++|++|.+.|+++|||||||..    .++........++.+++.+.+
T Consensus         2 riVikl--GgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~~~~~~~p~~~~~A   79 (310)
T TIGR00746         2 RVVVAL--GGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAADSEVPAMPLDVLGA   79 (310)
T ss_pred             eEEEEE--CHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhccccccccCCCCcchHHHH
Confidence            567787  788877432 22  466789999999999999999999999999733    333222222345556888999


Q ss_pred             HHHHHHHHHHHHHHH----HcCCce--------eEeehhc--hhhh----------------------------------
Q psy3759         496 LATIINSLALFDILN----KSGIIS--------HVMSAIS--IEKF----------------------------------  527 (844)
Q Consensus       496 ~~~~~~~~ll~~~L~----~~gi~a--------~~l~~~~--~~~~----------------------------------  527 (844)
                      ..+++.++++...|.    .+|++.        +.++..|  +...                                  
T Consensus        80 ~~qg~lg~~~~~~l~~~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~rr  159 (310)
T TIGR00746        80 MSQGMIGYMLQQALNNELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWRR  159 (310)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcceE
Confidence            999998888888776    777543        2333333  1000                                  


Q ss_pred             -------hhccchHHHHHHHhCCCEEEEeCCCCCCC-------------CcchHHHHHHHHHcCCcEEEEeecccccccC
Q psy3759         528 -------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIYNS  587 (844)
Q Consensus       528 -------~~~~~~~~l~~lL~~g~VPVv~G~~G~~~-------------~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~  587 (844)
                             ...++.+.+..+|+.|.++|.+|+.|.|.             +++|++|+++|.+++||+|+++|||||||++
T Consensus       160 vv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~  239 (310)
T TIGR00746       160 VVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYIN  239 (310)
T ss_pred             eecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC
Confidence                   11245678899999999777766666553             2699999999999999999999999999997


Q ss_pred             CCCCCCCceeecccCHHHHHh--------hccccchHHHH-HHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         588 DPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       588 dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~~~Aa-~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      ++  +|++++|++++.+++..        .|+|.+|+.|| +++.+.+.+++|++   ++++.++|.|+ .||+|.
T Consensus       240 ~~--~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~GT~I~  309 (310)
T TIGR00746       240 YG--KPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-AGTRVT  309 (310)
T ss_pred             CC--CCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence            53  48899999999888765        48999999888 66666678899986   67899999999 899996

The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.

>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]

Probab=99.92  E-value=1.2e-24  Score=226.51  Aligned_cols=214  Identities=19%  Similarity=0.185  Sum_probs=178.0

Q ss_pred             CCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhh---cccccc-------CCCcchHHHHHHHHHHHHHHHHHH
Q psy3759         438 GDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRG---ISNKIQ-------NIDRSTADYMGMLATIINSLALFD  507 (844)
Q Consensus       438 g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~ll~~  507 (844)
                      |+....+++..++++++|+.|+..|.++|||||||.....   ......       -.++.+++...++..|..+..+++
T Consensus        10 GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~G~vNk~iva   89 (265)
T COG0548          10 GGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLGGTVNKEIVA   89 (265)
T ss_pred             CceeecCchHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4445567778999999999999999999999999944332   222222       238889999999999999999999


Q ss_pred             HHHHcCCceeEeehhchhhh------------------hhccchHHHHHHHhCCCEEEEeC----CCCCC-CCcchHHHH
Q psy3759         508 ILNKSGIISHVMSAISIEKF------------------LESYIPLNAIKYLEEGKVVIFAG----GIGNP-FFTTDTTAA  564 (844)
Q Consensus       508 ~L~~~gi~a~~l~~~~~~~~------------------~~~~~~~~l~~lL~~g~VPVv~G----~~G~~-~~s~D~lAa  564 (844)
                      .|+.+|..++++++.|.+.+                  +..+|+..+..++++|+|||+++    ..|.. ++++|++|+
T Consensus        90 ~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G~~~NvnaD~~A~  169 (265)
T COG0548          90 RLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDGETLNVNADTAAG  169 (265)
T ss_pred             HHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCCcEEeeCHHHHHH
Confidence            99999999999999884211                  55678999999999999999998    22333 477999999


Q ss_pred             HHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHHHhCCC-CEEEEecCC
Q psy3759         565 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKL-PIRVFSIIK  636 (844)
Q Consensus       565 ~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a~~~gi-~v~I~~g~~  636 (844)
                      .+|.+|+|++|+++|||+|||+++|+  |  .+|++++.+++.+       .|||++|+.+|..|.+.|+ +++|+||..
T Consensus       170 ~iA~aLkAekLi~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~  245 (265)
T COG0548         170 ALAAALKAEKLILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRV  245 (265)
T ss_pred             HHHHHcCCCeEEEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCC
Confidence            99999999999999999999998875  3  6888888877765       6899999999999999999 599999999


Q ss_pred             cchHHHH-HcCCcccEEEEe
Q psy3759         637 SGALKRV-IEGKNEGTLVYE  655 (844)
Q Consensus       637 ~~~i~~~-l~Ge~~GT~I~~  655 (844)
                      |+.+... +.+..+||.|.+
T Consensus       246 ~~~ll~eLFt~~giGT~i~~  265 (265)
T COG0548         246 PHSLLLELFTRDGIGTMIVR  265 (265)
T ss_pred             cchHHHHHhcCCCcceEecC
Confidence            9997654 567778999863

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=99.92  E-value=5e-24  Score=240.73  Aligned_cols=326  Identities=18%  Similarity=0.224  Sum_probs=219.6

Q ss_pred             cccchhhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhccccc------------------cCCCc------------
Q psy3759         442 NINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKI------------------QNIDR------------  487 (844)
Q Consensus       442 ~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~------------------~~~~~------------  487 (844)
                      .-+.+.+++.++.|....+.|+++|+|+|++    +.+..+....                  ...++            
T Consensus        13 va~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~   92 (447)
T COG0527          13 VADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASELILDPFIAARLAEVIAE   92 (447)
T ss_pred             cCCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHHHHhhcchhhhhHhhhHhh
Confidence            3467889999999999888899999999983    2222222210                  00011            


Q ss_pred             --------------chHHHHHHHHHHH--HHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHH-HHHHHh
Q psy3759         488 --------------STADYMGMLATII--NSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLN-AIKYLE  541 (844)
Q Consensus       488 --------------~~~~~~~~~~~~~--~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~-l~~lL~  541 (844)
                                    .......++++|+  ++.+|+.+|+..|+++..+++++....         +....... +..+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~  172 (447)
T COG0527          93 FKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLE  172 (447)
T ss_pred             hhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhc
Confidence                          3345555566665  788999999999999999999876322         22233445 788899


Q ss_pred             CCCEEEEeCCCCCCC---Cc------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---h
Q psy3759         542 EGKVVIFAGGIGNPF---FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---K  609 (844)
Q Consensus       542 ~g~VPVv~G~~G~~~---~s------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~  609 (844)
                      .|.|||++||+|...   .+      +|++|+.||.+|+||++.||||||||||+||+..|+|++|++++|+|+.+   .
T Consensus       173 ~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~  252 (447)
T COG0527         173 EGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYL  252 (447)
T ss_pred             CCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHC
Confidence            999999999988542   22      99999999999999999999999999999999999999999999999988   8


Q ss_pred             ccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEecc-h-h-hh------hh--hhhhHHHhHHHHHHH
Q psy3759         610 KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIY-I-M-II------SD--IKKNTKQKMLNTIKI  678 (844)
Q Consensus       610 G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~-~-m-~~------~~--i~~~~~~~m~~~v~~  678 (844)
                      |+++.|++|+++|.+++||++|.|.++|+         ..||+|+++. . . .+      +.  .+.-....|....-.
T Consensus       253 GAkVLHprav~pa~~~~Ip~~i~~t~~p~---------~~GTlI~~~~~~~~~~v~gIa~~~~~~~i~v~~~~~~~~~g~  323 (447)
T COG0527         253 GAKVLHPRAVEPAMRSGIPLRIKNTFNPD---------APGTLITAETESDEPVVKGIALDDNVALITVSGPGMNGMVGF  323 (447)
T ss_pred             CchhcCHHHHHHHHhcCCcEEEEecCCCC---------CCceEEecCCcCCCCceEEEEeCCCeEEEEEEccCccccccH
Confidence            99999999999999999999999999884         4799999872 1 0 10      11  111112223333333


Q ss_pred             HHHHHHhhhcCCCcccccc------eeEEEecccccc-----cc-----eeeeeeccCC-ceEEEecC----CcccHHHH
Q psy3759         679 LKENLKKVRTGRANIGMLD------NIQVKYHEHLTK-----LL-----KIANITLFNS-HTISIQPF----EKEMSSII  737 (844)
Q Consensus       679 ~~~~l~~irtgr~~p~~ld------~i~V~~~g~~~~-----l~-----~~A~i~~~~~-~~l~i~~~----d~~~~~~i  737 (844)
                      +.+-|.-+.-...++.++-      ++.....+...+     |.     +...+.+..+ ..+.+--.    .|.....+
T Consensus       324 ~a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a~vsiVG~gm~~~~gvaa~~  403 (447)
T COG0527         324 AARVFGILAEAGINVDLITQSISEVSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLALVSIVGAGMRSNPGVAARI  403 (447)
T ss_pred             HHHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCeeEEEEEccccccCcCHHHHH
Confidence            4444555555566666662      222323332221     11     1112333322 22222111    36688889


Q ss_pred             HHHHHhcCCCCcceec-CCeeEEeCCCCCHHHHHHHHHHHHHH
Q psy3759         738 KKAINEANLGLNPTIQ-GNIIYVSIPPLTKERREEIVKLIKNI  779 (844)
Q Consensus       738 ~kAi~~s~l~~~p~~~-~~~i~v~iP~~T~E~R~~l~K~~k~~  779 (844)
                      .+|+.+.++|+.-... ...|.+.|+   ++..++.++.+.+.
T Consensus       404 f~aL~~~~ini~~issSe~~Is~vV~---~~~~~~av~~LH~~  443 (447)
T COG0527         404 FQALAEENINIIMISSSEISISFVVD---EKDAEKAVRALHEA  443 (447)
T ss_pred             HHHHHhCCCcEEEEEcCCceEEEEEc---cHHHHHHHHHHHHH
Confidence            9999988887776653 346666664   34444455544443

>PRK08841 aspartate kinase; Validated

Probab=99.92  E-value=2.2e-24  Score=241.84  Aligned_cols=205  Identities=21%  Similarity=0.277  Sum_probs=162.9

Q ss_pred             cccchhhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhccccccCC-CcchHHHHHHHHHHHHHHHHHHHHHHcCCce
Q psy3759         442 NINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNI-DRSTADYMGMLATIINSLALFDILNKSGIIS  516 (844)
Q Consensus       442 ~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a  516 (844)
                      .-+.+.+++++++|+.+.+.|+++|+|||||    +...+........ ++.+++.....+......+++.+|++.|+++
T Consensus        13 v~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~~~~~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a   92 (392)
T PRK08841         13 VGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAGEQVSMALLAMTLNKLGYAA   92 (392)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence            3467889999999999999999999999984    3333322221111 2333444433333346778888999999999


Q ss_pred             eEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---CC------cchHHHHHHHHHcCCcEEEEe
Q psy3759         517 HVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---FF------TTDTTAALRAAEIKAEIILKA  578 (844)
Q Consensus       517 ~~l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~---~~------s~D~lAa~lA~~l~Ad~Liil  578 (844)
                      +.+++.+....         +..++.+.+..+++.|.|||++|+.|..   .+      .+|++|+.+|.+|+||.|++|
T Consensus        93 ~~l~~~~~~i~t~~~~~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~  172 (392)
T PRK08841         93 RSLTGAQANIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIF  172 (392)
T ss_pred             EEEehhHcCEEecCCCCCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEE
Confidence            99998875211         2234567888999999999999986631   22      389999999999999999999


Q ss_pred             ecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759         579 TKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE  655 (844)
Q Consensus       579 TDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  655 (844)
                      |||||||++||+.+|+|++|++++++|+.+   .|++++|+.|+++|.++|+|++|.|++++          ..||+|..
T Consensus       173 TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~~----------~~GT~I~~  242 (392)
T PRK08841        173 TDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEV----------GEGTLIKG  242 (392)
T ss_pred             eCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCCC----------CCCeEEEe
Confidence            999999999999999999999999998876   79999999999999999999999999864          25999975


Q ss_pred             c
Q psy3759         656 I  656 (844)
Q Consensus       656 ~  656 (844)
                      +
T Consensus       243 ~  243 (392)
T PRK08841        243 E  243 (392)
T ss_pred             c
Confidence            4

>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

Probab=99.92  E-value=1.3e-24  Score=227.46  Aligned_cols=190  Identities=24%  Similarity=0.269  Sum_probs=154.8

Q ss_pred             cchhhhhhhhhhhhhhhCCCeEEEEeCchHH-hhhccccccCCCcchHHHHHHHHHHH--HHHHHHHHHHHcCCceeEee
Q psy3759         444 NSSIIKNIISEISEIVSCGIELAIVIGGGNI-CRGISNKIQNIDRSTADYMGMLATII--NSLALFDILNKSGIISHVMS  520 (844)
Q Consensus       444 d~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ll~~~L~~~gi~a~~l~  520 (844)
                      +++.+++++++|+.+ ..|+++|||||||.. ...+...           ..+++.|+  +..+++.+|+.+|+++..++
T Consensus        13 ~~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~-----------~~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~   80 (227)
T cd04234          13 SAERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIEL-----------ALLLSFGERLSARLLAAALRDRGIKARSLD   80 (227)
T ss_pred             CHHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHCCCCeEEeC
Confidence            456899999999999 889999999998522 2111111           13343443  57778889999999999998


Q ss_pred             hhchhhh---------hhccchHHHHHHHhC-CCEEEEeCCCCCC---CC------cchHHHHHHHHHcCCcEEEEeecc
Q psy3759         521 AISIEKF---------LESYIPLNAIKYLEE-GKVVIFAGGIGNP---FF------TTDTTAALRAAEIKAEIILKATKV  581 (844)
Q Consensus       521 ~~~~~~~---------~~~~~~~~l~~lL~~-g~VPVv~G~~G~~---~~------s~D~lAa~lA~~l~Ad~LiilTDV  581 (844)
                      +.++...         ....+.+.+..+++. |.|||++|+.|.+   .+      ++|++|+.+|.+|+||+|+++|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV  160 (227)
T cd04234          81 ARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDV  160 (227)
T ss_pred             HHHCCEEcCCccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECC
Confidence            8775221         334567889999999 9999999965422   22      389999999999999999999999


Q ss_pred             cccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         582 DGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       582 dGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      |||||+||+.+|++++|++++++|+.+   .|++++++.|+++|.++|+|++|.|+.+|+         ..||+|+
T Consensus       161 ~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~---------~~gT~I~  227 (227)
T cd04234         161 DGIYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE---------APGTLIT  227 (227)
T ss_pred             CccCCCCCCCCCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC---------CCCCEeC
Confidence            999999999999999999999998877   689999999999999999999999999874         3599984

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd

>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional

Probab=99.92  E-value=7.1e-25  Score=235.01  Aligned_cols=200  Identities=17%  Similarity=0.227  Sum_probs=163.3

Q ss_pred             hhhhhhhhhhhCCCeEEEEeCchHHhhhcccccc----------C-----CCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy3759         450 NIISEISEIVSCGIELAIVIGGGNICRGISNKIQ----------N-----IDRSTADYMGMLATIINSLALFDILNKSGI  514 (844)
Q Consensus       450 ~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~----------~-----~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi  514 (844)
                      +++.+|+.+...|.++|||||||.+.+.......          +     .++.+++...+... ..+..+.+.|.++|+
T Consensus        16 ~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~~-~ln~~lv~~L~~~Gv   94 (268)
T PRK14058         16 DALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAMA-LINKQLVERLQSLGV   94 (268)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHHH-HHHHHHHHHHHhCCC
Confidence            4689999998999999999999966665443221          1     25556666665555 666667789999999


Q ss_pred             ceeEeehhchhhh--------------------------hhccchHHHHHHHhCCCEEEEeCCC----CCC-CCcchHHH
Q psy3759         515 ISHVMSAISIEKF--------------------------LESYIPLNAIKYLEEGKVVIFAGGI----GNP-FFTTDTTA  563 (844)
Q Consensus       515 ~a~~l~~~~~~~~--------------------------~~~~~~~~l~~lL~~g~VPVv~G~~----G~~-~~s~D~lA  563 (844)
                      +++++++.+.+.+                          +..++.+.+..++++|+|||++|..    |.. ++++|++|
T Consensus        95 ~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A  174 (268)
T PRK14058         95 NAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAA  174 (268)
T ss_pred             CccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEeCceECCCCcEEecCHHHHH
Confidence            9999998775221                          3456789999999999999999832    222 36799999


Q ss_pred             HHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-----hccccchHHHHHHHHhCCC-CEEEEecCCc
Q psy3759         564 ALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFSFCRDQKL-PIRVFSIIKS  637 (844)
Q Consensus       564 a~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-----~G~~v~~~~Aa~~a~~~gi-~v~I~~g~~~  637 (844)
                      +.+|.+++||+|+|+|||||||++||+   ++++|++++.+++.+     +|+|..|+.++..+.+.|+ +++|++|..|
T Consensus       175 ~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~  251 (268)
T PRK14058        175 AAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVD  251 (268)
T ss_pred             HHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCc
Confidence            999999999999999999999999984   468999999887765     6999999999999999999 7999999999


Q ss_pred             chHHHHHcCCcccEEEEe
Q psy3759         638 GALKRVIEGKNEGTLVYE  655 (844)
Q Consensus       638 ~~i~~~l~Ge~~GT~I~~  655 (844)
                      +++.++|.|+  ||+|.+
T Consensus       252 ~~l~~~l~G~--GT~I~~  267 (268)
T PRK14058        252 DPISAALAGE--GTVIVN  267 (268)
T ss_pred             chHHHHhCCC--ceEEec
Confidence            9999999886  999975

>PRK06635 aspartate kinase; Reviewed

Probab=99.92  E-value=6.8e-24  Score=241.27  Aligned_cols=278  Identities=23%  Similarity=0.296  Sum_probs=202.8

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhccccc---cC-CCcchHHHHHHHH
Q psy3759         423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI---QN-IDRSTADYMGMLA  497 (844)
Q Consensus       423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~---~~-~~~~~~~~~~~~~  497 (844)
                      ++|+|.  +|+++       -+++.+++++++|..+.+.|+++|+|||| |.....+....   .. .++..++....+.
T Consensus         3 ~iViK~--GGs~l-------~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~G   73 (404)
T PRK06635          3 LIVQKF--GGTSV-------GDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTG   73 (404)
T ss_pred             eEEEeE--CCccc-------CCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhh
Confidence            456675  44433       35678999999999999899999999997 32222221111   11 1334444444333


Q ss_pred             HHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---C---C---cc
Q psy3759         498 TIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---F---F---TT  559 (844)
Q Consensus       498 ~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~---~---~---s~  559 (844)
                      ...++.+++.+|+.+|++++.+++.++...         +..++.+.+..+++.|.|||++|+.|.+   .   +   ++
T Consensus        74 e~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~s  153 (404)
T PRK06635         74 EQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGS  153 (404)
T ss_pred             HHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCCh
Confidence            445777899999999999999998776321         2345678899999999999999976532   1   2   48


Q ss_pred             hHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCC
Q psy3759         560 DTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIK  636 (844)
Q Consensus       560 D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~  636 (844)
                      |++|+++|..++||+|++||||||||++||+.+|++++|++++++|+.+   .|++++++.|+.++.++|+|++|.|+++
T Consensus       154 D~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~  233 (404)
T PRK06635        154 DTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFS  233 (404)
T ss_pred             HHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCC
Confidence            9999999999999999999999999999999999999999999998877   7999999999999999999999999876


Q ss_pred             cchHHHHHcCCcccEEEEecchhhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCcccccceeEEEecccccccceeeee
Q psy3759         637 SGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANI  716 (844)
Q Consensus       637 ~~~i~~~l~Ge~~GT~I~~~~~m~~~~i~~~~~~~m~~~v~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~l~~~A~i  716 (844)
                      +          ..||.|.+...           ..|                   ....+..|.        -..+++.|
T Consensus       234 ~----------~~gT~i~~~~~-----------~~~-------------------~~~~i~~I~--------~~~~v~~I  265 (404)
T PRK06635        234 D----------NPGTLITGEEE-----------EIM-------------------EQPVVTGIA--------FDKDEAKV  265 (404)
T ss_pred             C----------CCCCEEeeCCc-----------ccc-------------------ccCceEEEE--------ecCCeEEE
Confidence            4          35999986421           000                   001122222        24567777


Q ss_pred             eccCCceEEEecCCcccHHHHHHHHHhcCCCCcceecC------CeeEEeCCC
Q psy3759         717 TLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQG------NIIYVSIPP  763 (844)
Q Consensus       717 ~~~~~~~l~i~~~d~~~~~~i~kAi~~s~l~~~p~~~~------~~i~v~iP~  763 (844)
                      ++.+      -+-.+..+..|.+++.+.+.++.-...+      ..+.+.+|.
T Consensus       266 sv~g------~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~  312 (404)
T PRK06635        266 TVVG------VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR  312 (404)
T ss_pred             EECC------CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH
Confidence            7755      1345778899999999888777654332      467777753

>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

Probab=99.92  E-value=2e-24  Score=228.40  Aligned_cols=202  Identities=23%  Similarity=0.337  Sum_probs=156.5

Q ss_pred             ccchhhhhhhhhhhhhhhCCCeEEEEeCc-----hHH----hhhcccc-ccCCCcchHHHHHHHHHHHHHHHHHHHHHHc
Q psy3759         443 INSSIIKNIISEISEIVSCGIELAIVIGG-----GNI----CRGISNK-IQNIDRSTADYMGMLATIINSLALFDILNKS  512 (844)
Q Consensus       443 id~~~i~~~a~~I~~l~~~G~~vVIVhGG-----G~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~  512 (844)
                      -+++.+++++++|+.+.+.|++++|||||     |..    ..+.... ....++..++.............++++|+.+
T Consensus        12 ~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~   91 (244)
T cd04260          12 STKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLMSCGEIISAVVLTSTLRAQ   91 (244)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence            35667899999999999999988877753     211    1111111 1123344444443333334566799999999


Q ss_pred             CCceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCC---CCC---C---cchHHHHHHHHHcCCcE
Q psy3759         513 GIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIG---NPF---F---TTDTTAALRAAEIKAEI  574 (844)
Q Consensus       513 gi~a~~l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G---~~~---~---s~D~lAa~lA~~l~Ad~  574 (844)
                      |++++.+++.+...+         +..++.+.+..+++.|+|||++|+.|   +..   +   ++|++|+.+|.+|+||+
T Consensus        92 Gi~a~~l~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~  171 (244)
T cd04260          92 GLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEY  171 (244)
T ss_pred             CCCeEEechHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCE
Confidence            999999988764221         23457788999999999999999643   222   2   38999999999999999


Q ss_pred             EEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccE
Q psy3759         575 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT  651 (844)
Q Consensus       575 LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT  651 (844)
                      |+++|||||||++||+.+|++++|++++++|+.+   .|..++|+.|++.|.++++|++|.|+++|+          .||
T Consensus       172 l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~~~~~----------~gt  241 (244)
T cd04260         172 VEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN----------PGT  241 (244)
T ss_pred             EEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCC----------CCC
Confidence            9999999999999999999999999999988877   788999999999999999999999998762          599


Q ss_pred             EEE
Q psy3759         652 LVY  654 (844)
Q Consensus       652 ~I~  654 (844)
                      +|+
T Consensus       242 ~i~  244 (244)
T cd04260         242 LIT  244 (244)
T ss_pred             EeC
Confidence            884

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet

>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase

Probab=99.92  E-value=2.7e-24  Score=258.37  Aligned_cols=235  Identities=17%  Similarity=0.163  Sum_probs=178.8

Q ss_pred             hhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhcccccc----C----CCcchHH
Q psy3759         421 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQ----N----IDRSTAD  491 (844)
Q Consensus       421 ~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~----~----~~~~~~~  491 (844)
                      .+++|+|+  +++ +++++++.++.+.+.+++++|+.|++.|+++|||+|| |...+.......    +    ..+....
T Consensus         7 ~~~iViKi--Gss-~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~   83 (715)
T TIGR01092         7 VKRIVVKV--GTA-VVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPEL   83 (715)
T ss_pred             CCEEEEEe--Ccc-eeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchH
Confidence            46789996  555 4545557799999999999999999999999997776 444443333221    0    1244455


Q ss_pred             HHHHHHHHHHHHHHHHH---HHHcCCcee--Eeehhchhhh-hhccchHHHHHHHhCCCEEEEeCCCCCC----------
Q psy3759         492 YMGMLATIINSLALFDI---LNKSGIISH--VMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIGNP----------  555 (844)
Q Consensus       492 ~~~~~~~~~~~~ll~~~---L~~~gi~a~--~l~~~~~~~~-~~~~~~~~l~~lL~~g~VPVv~G~~G~~----------  555 (844)
                      ..+++++.+++.++..|   |..+++.+.  .++..++... ........+..+|+.|+|||++++....          
T Consensus        84 ~~qa~aa~gq~~L~~~y~~~f~~~~i~~aQ~Llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~  163 (715)
T TIGR01092        84 DGKACAAVGQSGLMALYETMFTQLDITAAQILVTDLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQ  163 (715)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeeEEEEechhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCccccccccccccc
Confidence            66777777777776665   888888763  3333333222 2222457889999999999998622111          


Q ss_pred             --CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHH-h----------hccccchHHHHHHH
Q psy3759         556 --FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-S----------KKLEIMDSTAFSFC  622 (844)
Q Consensus       556 --~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~-~----------~G~~v~~~~Aa~~a  622 (844)
                        ++++|++|++||.+++||+|+++|||||||++||+ +|++++|++++..+.. .          +|||..|+.|+..|
T Consensus       164 g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a  242 (715)
T TIGR01092       164 GIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWA  242 (715)
T ss_pred             ceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHH
Confidence              45699999999999999999999999999999996 5999999988754222 1          68999999999999


Q ss_pred             HhCCCCEEEEecCCcchHHHHHcCCcccEEEEecchh
Q psy3759         623 RDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIM  659 (844)
Q Consensus       623 ~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~~m  659 (844)
                      .++|++++|+||..+++|.+++.|+..||+|.+..+|
T Consensus       243 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~~~~  279 (715)
T TIGR01092       243 AYGGTPVIIASGTAPKNITKVVEGKKVGTLFHEDAHL  279 (715)
T ss_pred             HHCCCeEEEeCCCCcchHHHHhcCCCCceEecccchh
Confidence            9999999999999999999999999899999987544

This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.

>KOG0830|consensus

Probab=99.92  E-value=4.9e-25  Score=218.83  Aligned_cols=156  Identities=22%  Similarity=0.295  Sum_probs=146.4

Q ss_pred             CCCCcCcccccc-CCeeEeeHHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcCCccccccccCCCCC
Q psy3759          23 NPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLT  101 (844)
Q Consensus        23 np~m~~yi~g~r-~~~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lT  101 (844)
                      |..|.+|+|+.| +|+|||||.+|++.|..|...|..+ .+...|-.+++++..+.+|.+||..+|...|.+++.||+||
T Consensus         2 ~~~~~~y~~~~~~d~~~i~~~~~twekl~~aar~i~ai-enp~dv~v~ssr~~gqravlkfa~~tgatpiag~ftpg~ft   80 (254)
T KOG0830|consen    2 NFQMEQYIYKRRSDGIYIINLGRTWEKLLLAARAIVAI-ENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFT   80 (254)
T ss_pred             CcccccccccccCCceEEeeccccHHHHHHHHHHHhhc-cCccceEEEccCCcchhHHHHHHHhhCCCcccccccccccc
Confidence            678999999988 6899999999999999999999998 89999999999999999999999999999999999999999


Q ss_pred             ChHhHHHHHHHHHHHHhhhccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCCcchHHHHHHhcCCC
Q psy3759         102 NFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP  181 (844)
Q Consensus       102 N~~~~~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~ai~Ea~~l~IP  181 (844)
                      |..+-                 .|                             +.|.++|++||+.|++++.|+...|+|
T Consensus        81 n~iq~-----------------~f-----------------------------~epr~lvvtdpr~d~q~~~E~s~~n~p  114 (254)
T KOG0830|consen   81 NQIQA-----------------AF-----------------------------REPRLLVVTDPRADHQPLTEASYVNLP  114 (254)
T ss_pred             hHHHH-----------------hh-----------------------------cCCceeeecCcccccchhhhhhhcCCc
Confidence            96641                 11                             479999999999999999999999999


Q ss_pred             EEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchh
Q psy3759         182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT  225 (844)
Q Consensus       182 ~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~  225 (844)
                      ||+|||||+...++|..|||||++..||.+++|+|++.+++.+.
T Consensus       115 ~ialcnTDSpL~~VDIAIPcNNKG~hSVgl~ww~LareVLrmrg  158 (254)
T KOG0830|consen  115 TIALCNTDSPLCYVDIAIPCNNKGAHSVGVMWWMLAREVLRMRG  158 (254)
T ss_pred             eEEEecCCCccceeeeeeecCCCCcccchhhhhhhhHHHHHHHh
Confidence            99999999999999999999999999999999999999887663

>CHL00202 argB acetylglutamate kinase; Provisional

Probab=99.91  E-value=3.2e-24  Score=231.36  Aligned_cols=208  Identities=17%  Similarity=0.168  Sum_probs=169.1

Q ss_pred             cchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc-------cC---CCcchHHHHHHHHHHHHHHHHHHHHHHcC
Q psy3759         444 NSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QN---IDRSTADYMGMLATIINSLALFDILNKSG  513 (844)
Q Consensus       444 d~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~g  513 (844)
                      ++...+.++++|+.|...|.++|||||||.+.+......       .+   .++.+++...++.++..+..+.+.|..+|
T Consensus        37 ~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~rvT~~~~l~~~~~~l~g~ln~~lv~~L~~~G  116 (284)
T CHL00202         37 NLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKVTMEIVEMVLAGKVNKDLVGSINANG  116 (284)
T ss_pred             CcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeECCcccCCHHHHHHHHHHHhhHHHHHHHHHHHhCC
Confidence            344556899999999999999999999997655433321       12   25666788888888888999999999999


Q ss_pred             CceeEeehhchhh---------------hhhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHHHHHHHcCCc
Q psy3759         514 IISHVMSAISIEK---------------FLESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALRAAEIKAE  573 (844)
Q Consensus       514 i~a~~l~~~~~~~---------------~~~~~~~~~l~~lL~~g~VPVv~G~----~G~~-~~s~D~lAa~lA~~l~Ad  573 (844)
                      ++++++++.+.+.               .+..++.+.+..+++.|.|||++|.    .|.. ++++|++|+.+|.+|+||
T Consensus       117 v~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad  196 (284)
T CHL00202        117 GKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAE  196 (284)
T ss_pred             CCeeeeeeccCCEEEEEeCCCcccccceeEEecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCC
Confidence            9999999987531               1445788999999999999999983    1222 467999999999999999


Q ss_pred             EEEEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHHHhCCCC-EEEEecCCcch-HHHHH
Q psy3759         574 IILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLP-IRVFSIIKSGA-LKRVI  644 (844)
Q Consensus       574 ~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a~~~gi~-v~I~~g~~~~~-i~~~l  644 (844)
                      +|+|+|||||||+++++  | .++|++++.+++.+       +|||..|+.+|..|.+.|++ ++|++|..|+. +.+++
T Consensus       197 ~li~lTdv~Gv~~~~~d--~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~  273 (284)
T CHL00202        197 KLILLTDTPGILADIND--P-NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEIL  273 (284)
T ss_pred             EEEEEeCChhhcCCCCC--C-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHh
Confidence            99999999999985321  3 36899998877654       58999999999999999986 78999999987 58888


Q ss_pred             cCCcccEEEE
Q psy3759         645 EGKNEGTLVY  654 (844)
Q Consensus       645 ~Ge~~GT~I~  654 (844)
                      .++..||+|+
T Consensus       274 ~~~g~GT~i~  283 (284)
T CHL00202        274 TEKGIGSMLV  283 (284)
T ss_pred             cCCCCceEEe
Confidence            8888999985

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=99.91  E-value=4.1e-24  Score=242.84  Aligned_cols=204  Identities=22%  Similarity=0.239  Sum_probs=161.5

Q ss_pred             ccchhhhhhhhhhhhhhhCCCeEEEEeCchH-Hhhhccccc-----cCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCce
Q psy3759         443 INSSIIKNIISEISEIVSCGIELAIVIGGGN-ICRGISNKI-----QNIDRSTADYMGMLATIINSLALFDILNKSGIIS  516 (844)
Q Consensus       443 id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a  516 (844)
                      .+.+.+++++++|+.+.+.|+++++|||||. ....+....     ...++...+.+.......++.+++.+|+++|+++
T Consensus        13 ~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a   92 (401)
T TIGR00656        13 GSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHGERLSSALFSGALRDLGVKA   92 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCce
Confidence            3567899999999999889999999999952 211111111     1122333444444444446889999999999999


Q ss_pred             eEeehhchhh---------hhhccch-HHHHHHHhCCCEEEEeCCCCCC--C-C------cchHHHHHHHHHcCCcEEEE
Q psy3759         517 HVMSAISIEK---------FLESYIP-LNAIKYLEEGKVVIFAGGIGNP--F-F------TTDTTAALRAAEIKAEIILK  577 (844)
Q Consensus       517 ~~l~~~~~~~---------~~~~~~~-~~l~~lL~~g~VPVv~G~~G~~--~-~------s~D~lAa~lA~~l~Ad~Lii  577 (844)
                      +.+++.+...         .+...+. +.+..+++.|.|||++|+.|.+  + .      .+|++|+.+|.+|+||.|++
T Consensus        93 ~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i  172 (401)
T TIGR00656        93 IWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDI  172 (401)
T ss_pred             EEeccccceEEeCCCCCceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEE
Confidence            9998766421         1223344 8899999999999999976521  2 1      27999999999999999999


Q ss_pred             eecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         578 ATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       578 lTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      |||||||||+||+.+|+++++++++++|+.+   .|++++|++|+.+|.++++|++|.|+++|+          .||+|+
T Consensus       173 ~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~----------~gT~I~  242 (401)
T TIGR00656       173 YTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE----------EGTLIT  242 (401)
T ss_pred             EECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC----------CCeEEE
Confidence            9999999999999999999999999999987   799999999999999999999999999873          499997


Q ss_pred             ec
Q psy3759         655 EI  656 (844)
Q Consensus       655 ~~  656 (844)
                      +.
T Consensus       243 ~~  244 (401)
T TIGR00656       243 NS  244 (401)
T ss_pred             eC
Confidence            64

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed

Probab=99.91  E-value=5.2e-24  Score=227.83  Aligned_cols=226  Identities=21%  Similarity=0.221  Sum_probs=172.9

Q ss_pred             hHHHHHHHhhhhhhhcCCCCcccc---hhhhhhhhhhhhhhhCCCeEEEEeCchH----Hhhhcccccc-CCCcchHHHH
Q psy3759         422 SLAVLKAQQLGEALMKGDAYNINS---SIIKNIISEISEIVSCGIELAIVIGGGN----ICRGISNKIQ-NIDRSTADYM  493 (844)
Q Consensus       422 ~~iv~k~~~~~~~l~~g~~~~id~---~~i~~~a~~I~~l~~~G~~vVIVhGGG~----~~~~~~~~~~-~~~~~~~~~~  493 (844)
                      +++|+.+  +|.+++..+......   +.++..|++|+++.+.|++++|+||+|.    .+++...... +.++.++|.+
T Consensus         3 ~~ivval--gGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~   80 (313)
T PRK12454          3 KRIVIAL--GGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVA   80 (313)
T ss_pred             ceEEEEe--ChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchh
Confidence            3567777  888888644333332   4789999999999999999999999974    5554333332 3677889999


Q ss_pred             HHHHHHHHHHHHHHH----HHHcCCceeEeehhch-----------------hh--------------------------
Q psy3759         494 GMLATIINSLALFDI----LNKSGIISHVMSAISI-----------------EK--------------------------  526 (844)
Q Consensus       494 ~~~~~~~~~~ll~~~----L~~~gi~a~~l~~~~~-----------------~~--------------------------  526 (844)
                      .+.++|+.+++|+.+    |..+|+.....+..+.                 +.                          
T Consensus        81 ~a~sqG~igy~l~~al~~~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~g~  160 (313)
T PRK12454         81 GAMTQGWIGYMIQQALRNELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGW  160 (313)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCCce
Confidence            999999999988777    5777766532222110                 00                          


Q ss_pred             --------hhhccchHHHHHHHhCCCEEEEeCCCCCCCCc-------------chHHHHHHHHHcCCcEEEEeecccccc
Q psy3759         527 --------FLESYIPLNAIKYLEEGKVVIFAGGIGNPFFT-------------TDTTAALRAAEIKAEIILKATKVDGIY  585 (844)
Q Consensus       527 --------~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~s-------------~D~lAa~lA~~l~Ad~LiilTDVdGVy  585 (844)
                              ....++.+.+..+|+.|.|||++|+.|+|.++             +|.+|+++|..|+||+|+|+|||||||
T Consensus       161 RrvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy  240 (313)
T PRK12454        161 RRVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVY  240 (313)
T ss_pred             EEEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceee
Confidence                    01224578899999999999999987777432             599999999999999999999999999


Q ss_pred             cCCCCCCCCceeecccCHHHHHh--------hccccchHHHH-HHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759         586 NSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE  655 (844)
Q Consensus       586 t~dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~~~Aa-~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  655 (844)
                      ++++  .|++++|++++.+++.+        .|+|.+|+.|+ +++.+.+.+++|++   ++.+.++|.|+ .||+|.+
T Consensus       241 ~~~~--~p~~~~i~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~-~GT~I~~  313 (313)
T PRK12454        241 LNYG--KPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGK-TGTRIIP  313 (313)
T ss_pred             CCCC--CCCCeEccccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence            9744  48899999999988755        58899999988 55555567888874   66799999998 7999964

>PLN02512 acetylglutamate kinase

Probab=99.91  E-value=8e-24  Score=230.68  Aligned_cols=208  Identities=17%  Similarity=0.198  Sum_probs=168.0

Q ss_pred             chhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc-------cC---CCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy3759         445 SSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QN---IDRSTADYMGMLATIINSLALFDILNKSGI  514 (844)
Q Consensus       445 ~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi  514 (844)
                      ++....++++|+.|...|.++|||||||.+.+.+....       .+   .++..++.+.+...+..+..+++.|.++|+
T Consensus        62 ~~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~~L~~~Gv  141 (309)
T PLN02512         62 PELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKNGLRVTDAETMEVVEMVLVGKVNKSLVSLINKAGG  141 (309)
T ss_pred             hhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence            34556788899988889999999999997655433221       11   255566777777788888999999999999


Q ss_pred             ceeEeehhchh----------------hhhhccchHHHHHHHhCCCEEEEeCCC----CC-CCCcchHHHHHHHHHcCCc
Q psy3759         515 ISHVMSAISIE----------------KFLESYIPLNAIKYLEEGKVVIFAGGI----GN-PFFTTDTTAALRAAEIKAE  573 (844)
Q Consensus       515 ~a~~l~~~~~~----------------~~~~~~~~~~l~~lL~~g~VPVv~G~~----G~-~~~s~D~lAa~lA~~l~Ad  573 (844)
                      +++++++.+.+                ..+..++.+.+..+++.|.|||++|..    |. .++++|++|+.+|.+|+||
T Consensus       142 ~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad  221 (309)
T PLN02512        142 TAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAE  221 (309)
T ss_pred             CeEEeehhhCCEEEEEEcCcCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCC
Confidence            99999987641                114457889999999999999999831    11 1357999999999999999


Q ss_pred             EEEEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHHHhCCCC-EEEEecCCcchHH-HHH
Q psy3759         574 IILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLP-IRVFSIIKSGALK-RVI  644 (844)
Q Consensus       574 ~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a~~~gi~-v~I~~g~~~~~i~-~~l  644 (844)
                      +|+++|||||||+++|   +++++|++++.+++.+       +|||..|+.++..+.+.|++ ++|++|..|+.+. +++
T Consensus       222 ~li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~  298 (309)
T PLN02512        222 KLILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEIL  298 (309)
T ss_pred             EEEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHh
Confidence            9999999999999864   3478899999887755       69999999999998999995 8999999998865 677


Q ss_pred             cCCcccEEEEe
Q psy3759         645 EGKNEGTLVYE  655 (844)
Q Consensus       645 ~Ge~~GT~I~~  655 (844)
                      .++..||+|.+
T Consensus       299 ~~~~~GT~I~~  309 (309)
T PLN02512        299 TDEGAGTMITG  309 (309)
T ss_pred             cCCCCeeEEeC
Confidence            78888999974

>PRK12353 putative amino acid kinase; Reviewed

Probab=99.91  E-value=7.6e-24  Score=230.52  Aligned_cols=226  Identities=22%  Similarity=0.209  Sum_probs=161.5

Q ss_pred             hHHHHHHHhhhhhhhcC-CCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchH----Hhhhcccccc---CCCcchHHHH
Q psy3759         422 SLAVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGN----ICRGISNKIQ---NIDRSTADYM  493 (844)
Q Consensus       422 ~~iv~k~~~~~~~l~~g-~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~----~~~~~~~~~~---~~~~~~~~~~  493 (844)
                      +++|+|+  +|+++..+ ++..++.+.+..++++|+.+.+.|+++|||||||.    ..++......   ..+....+..
T Consensus         3 ~~iVIkl--GG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~~~~~~~~~~~   80 (314)
T PRK12353          3 KKIVVAL--GGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKNKVPAMPLDVC   80 (314)
T ss_pred             cEEEEEE--CHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCCCCCCchhHHH
Confidence            5678887  77776643 23458999999999999999999999999999953    3333222110   1122223333


Q ss_pred             HHHHHHHHHH----HHHHHHHHcCCce--------eEeehhchh--h-------h------------------------h
Q psy3759         494 GMLATIINSL----ALFDILNKSGIIS--------HVMSAISIE--K-------F------------------------L  528 (844)
Q Consensus       494 ~~~~~~~~~~----ll~~~L~~~gi~a--------~~l~~~~~~--~-------~------------------------~  528 (844)
                      .+..+++.+.    .+...|..+|+..        +.+++.+..  .       +                        .
T Consensus        81 ~a~~qg~l~~~l~~~~~~~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~~~  160 (314)
T PRK12353         81 GAMSQGYIGYHLQNALRNELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGRGY  160 (314)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCcee
Confidence            3444443333    3444477777622        122332210  0       0                        0


Q ss_pred             ----------hccchHHHHHHHhCCCEEEEeCCCCCCC-------------CcchHHHHHHHHHcCCcEEEEeecccccc
Q psy3759         529 ----------ESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIY  585 (844)
Q Consensus       529 ----------~~~~~~~l~~lL~~g~VPVv~G~~G~~~-------------~s~D~lAa~lA~~l~Ad~LiilTDVdGVy  585 (844)
                                ..++.+.+..+|++|+|||++|+.|.|.             .++|++|+++|.+++||+|+++|||||||
T Consensus       161 r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy  240 (314)
T PRK12353        161 RRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVY  240 (314)
T ss_pred             EeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCcccc
Confidence                      0134688999999999999998765553             33699999999999999999999999999


Q ss_pred             cCCCCCCCCceeecccCHHHHHh--------hccccchHHHHHHHH--hCCCCEEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759         586 NSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCR--DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE  655 (844)
Q Consensus       586 t~dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~~~Aa~~a~--~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  655 (844)
                      +++|  .|++++|++++..++.+        +|+|.+|+.||..+.  +.|++++|++   ++++.+++.|+ .||+|.|
T Consensus       241 ~~~~--~~~a~~i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~GT~i~~  314 (314)
T PRK12353        241 INFG--KPNQKKLDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-AGTVIVK  314 (314)
T ss_pred             CCCC--CCCCeECcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-CCeEecC
Confidence            9766  38999999999877654        588999999886665  7799999997   67899999998 8999964

>PLN02418 delta-1-pyrroline-5-carboxylate synthase

Probab=99.91  E-value=1.9e-23  Score=250.46  Aligned_cols=232  Identities=17%  Similarity=0.202  Sum_probs=174.5

Q ss_pred             hhHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCc----hHHhhhccccccC----C--CcchH
Q psy3759         421 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG----GNICRGISNKIQN----I--DRSTA  490 (844)
Q Consensus       421 ~~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGG----G~~~~~~~~~~~~----~--~~~~~  490 (844)
                      .+++|+|+  +++++. +..+.++...+.+++++|+++++.|+++|||+||    |+...++......    +  +....
T Consensus        15 ~~~iViK~--G~ssl~-~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~~~~~~~~~~~~~~~   91 (718)
T PLN02418         15 VKRVVIKV--GTAVVT-RDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLVNSSFADLQKPQMEL   91 (718)
T ss_pred             CCEEEEEe--CCCeec-CCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhhhcccccCCCCcchH
Confidence            46789996  666554 4556799999999999999999999999999998    4444444332111    1  12233


Q ss_pred             HHHHHHHHHHHHH---HHHHHHHHcCCcee--Eeehhchhhh-hhccchHHHHHHHhCCCEEEEeCCCCCC---------
Q psy3759         491 DYMGMLATIINSL---ALFDILNKSGIISH--VMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIGNP---------  555 (844)
Q Consensus       491 ~~~~~~~~~~~~~---ll~~~L~~~gi~a~--~l~~~~~~~~-~~~~~~~~l~~lL~~g~VPVv~G~~G~~---------  555 (844)
                      +. +++++.++..   ++..+|+.+|+++.  .++..++... ........+..+|+.|.|||+++.....         
T Consensus        92 ~~-qa~aa~Gq~~l~~~~~~~f~~~g~~~~qillT~~~~~~~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~~  170 (718)
T PLN02418         92 DG-KACAAVGQSELMALYDTLFSQLDVTASQLLVTDSDFRDPDFRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYEDS  170 (718)
T ss_pred             HH-HHHHHhhHHHHHHHHHHHHHHcCCeEEEEEecHhHhcchhHhHhHHHHHHHHHHCCCEEEEcCCCCccccccccccc
Confidence            33 4445555444   44455999999774  3333333211 2223457888999999999998732211         


Q ss_pred             --CC-cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHH-----------hhccccchHHHHHH
Q psy3759         556 --FF-TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-----------SKKLEIMDSTAFSF  621 (844)
Q Consensus       556 --~~-s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~-----------~~G~~v~~~~Aa~~  621 (844)
                        .+ .+|++|+++|.+++||.|+|+|||||||++||+ +|++++|++++..+..           -+|||.+|+.|+..
T Consensus       171 ~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~  249 (718)
T PLN02418        171 SGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVN  249 (718)
T ss_pred             cCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHH
Confidence              22 499999999999999999999999999999997 5899999998653321           17899999999999


Q ss_pred             HHhCCCCEEEEecCCcchHHHHHcCCcccEEEEecc
Q psy3759         622 CRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIY  657 (844)
Q Consensus       622 a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~  657 (844)
                      |.++|++++|+||..|++|.+++.|+..||+|.+..
T Consensus       250 a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  285 (718)
T PLN02418        250 AASAGIPVVITSGYALDNIRKVLRGERVGTLFHQDA  285 (718)
T ss_pred             HHHCCCcEEEeCCCCcchHHHHhcCCCCceEecccc
Confidence            999999999999999999999999999999999863

>PRK12686 carbamate kinase; Reviewed

Probab=99.90  E-value=2.2e-23  Score=223.67  Aligned_cols=225  Identities=16%  Similarity=0.189  Sum_probs=168.7

Q ss_pred             hHHHHHHHhhhhhhhcCC-CCcccchhhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhcccccc-CCCcchHHHHHH
Q psy3759         422 SLAVLKAQQLGEALMKGD-AYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ-NIDRSTADYMGM  495 (844)
Q Consensus       422 ~~iv~k~~~~~~~l~~g~-~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~-~~~~~~~~~~~~  495 (844)
                      +++|+.+  +|.++...+ ........++.+|++|+.|...|+++||+||+|    +..+....... ..++.++|.+.+
T Consensus         3 ~~iVial--GGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a   80 (312)
T PRK12686          3 EKIVIAL--GGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVA   80 (312)
T ss_pred             CEEEEEc--ChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhh
Confidence            3567776  788877533 223445578999999999999999999999997    33332222222 357889999999


Q ss_pred             HHHHHHHHHHHHH----HHHcCCce--eE------eehhch-------------------------h-----h-------
Q psy3759         496 LATIINSLALFDI----LNKSGIIS--HV------MSAISI-------------------------E-----K-------  526 (844)
Q Consensus       496 ~~~~~~~~ll~~~----L~~~gi~a--~~------l~~~~~-------------------------~-----~-------  526 (844)
                      .++|..+++|++.    |..+++..  +.      ++..+.                         +     +       
T Consensus        81 ~sqg~iGy~~~q~l~~~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~rr  160 (312)
T PRK12686         81 MSQGMIGYWLQNALNNELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRR  160 (312)
T ss_pred             hccchhhHHHHHHHHHHHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCeEE
Confidence            9999999988887    44455432  11      111110                         0     0       


Q ss_pred             h------hhccchHHHHHHHhCCCEEEEeCCCCCC-------------CCcchHHHHHHHHHcCCcEEEEeecccccccC
Q psy3759         527 F------LESYIPLNAIKYLEEGKVVIFAGGIGNP-------------FFTTDTTAALRAAEIKAEIILKATKVDGIYNS  587 (844)
Q Consensus       527 ~------~~~~~~~~l~~lL~~g~VPVv~G~~G~~-------------~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~  587 (844)
                      +      .+-++.+.+..++++|+|||.+|+.|.|             .+++|++|++||.+|+||+|+|+|||||||++
T Consensus       161 vV~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~  240 (312)
T PRK12686        161 VVPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN  240 (312)
T ss_pred             eeCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC
Confidence            0      1125778999999999999998875533             13479999999999999999999999999996


Q ss_pred             CCCCCCCceeecccCHHHHHh--------hccccchHHHHHHHHhC--CCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         588 DPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQ--KLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       588 dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~~~Aa~~a~~~--gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                       |. .|++++|++++.+++..        +|||.+|+.|+..+.+.  |.+++|++   ++.+.++|.|+ .||+|.
T Consensus       241 -~~-~p~ak~I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~~aL~G~-~GT~I~  311 (312)
T PRK12686        241 -FN-KPNQQKLDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQAKEALAGN-AGTHIT  311 (312)
T ss_pred             -CC-CCCCeECCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence             43 48899999999888755        59999999998887754  56888886   67788999998 799985

>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis

Probab=99.90  E-value=1.4e-23  Score=226.57  Aligned_cols=218  Identities=19%  Similarity=0.225  Sum_probs=168.8

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc-------cC---CCcchHHH
Q psy3759         423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QN---IDRSTADY  492 (844)
Q Consensus       423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~-------~~---~~~~~~~~  492 (844)
                      .+|+|+  +|+++.       +++....++++++.+...|.++|||||||...+.+....       .+   .++..++.
T Consensus        16 ~~ViKl--GGs~i~-------~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~~~~~~   86 (279)
T cd04250          16 TVVIKY--GGNAMK-------DEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEETMEI   86 (279)
T ss_pred             EEEEEE--ChHHhc-------CccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHH
Confidence            466775  454432       233566788888888888999999999986654433221       11   23344455


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------------------hhccchHHHHHHHhCCCEEEEeCC
Q psy3759         493 MGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------------------LESYIPLNAIKYLEEGKVVIFAGG  551 (844)
Q Consensus       493 ~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------------------~~~~~~~~l~~lL~~g~VPVv~G~  551 (844)
                      ..++.++..+..+++.|.++|++++++++.+.+.+                     +..++.+.+..+++.|.|||++|.
T Consensus        87 ~~~~~~g~ln~~l~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~~  166 (279)
T cd04250          87 VEMVLVGKVNKEIVSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAPV  166 (279)
T ss_pred             HHHHHcCchHHHHHHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcCC
Confidence            55555456677789999999999999998764111                     345678999999999999999983


Q ss_pred             CCCC------CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHH
Q psy3759         552 IGNP------FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTA  618 (844)
Q Consensus       552 ~G~~------~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~A  618 (844)
                       +.+      ++++|.+|+++|..|+||.|+++|||||||++||+   .+++|++++.+|+.+       +|+|..|+.+
T Consensus       167 -~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~  242 (279)
T cd04250         167 -GVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEA  242 (279)
T ss_pred             -ccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHH
Confidence             321      24599999999999999999999999999999985   378999999887654       6999999999


Q ss_pred             HHHHHhCCCC-EEEEecCCcch-HHHHHcCCcccEEE
Q psy3759         619 FSFCRDQKLP-IRVFSIIKSGA-LKRVIEGKNEGTLV  653 (844)
Q Consensus       619 a~~a~~~gi~-v~I~~g~~~~~-i~~~l~Ge~~GT~I  653 (844)
                      |..+.+.|++ ++|++|..|++ +.+++.++..||.|
T Consensus       243 a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i  279 (279)
T cd04250         243 CIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI  279 (279)
T ss_pred             HHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence            9999998986 99999999986 57888888899975

In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A

>PRK00942 acetylglutamate kinase; Provisional

Probab=99.89  E-value=3e-23  Score=224.48  Aligned_cols=218  Identities=20%  Similarity=0.209  Sum_probs=170.2

Q ss_pred             hHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhcccccc-------C---CCcchHH
Q psy3759         422 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ-------N---IDRSTAD  491 (844)
Q Consensus       422 ~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~-------~---~~~~~~~  491 (844)
                      +++|+|+  +|+.+.       +.+.+..++++|+.+.+.|.++|||||||...........       +   .++.+++
T Consensus        24 ~~iViK~--GGs~l~-------~~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g~~~t~~~~l~   94 (283)
T PRK00942         24 KTIVIKY--GGNAMT-------DEELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDAETME   94 (283)
T ss_pred             CeEEEEE--ChHHhc-------CcchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCCEecCCHHHHH
Confidence            3567775  555432       2235677999999998999999999999865554332111       1   1334455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhh----------------hhhccchHHHHHHHhCCCEEEEeCCCCCC
Q psy3759         492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEK----------------FLESYIPLNAIKYLEEGKVVIFAGGIGNP  555 (844)
Q Consensus       492 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~----------------~~~~~~~~~l~~lL~~g~VPVv~G~~G~~  555 (844)
                      ...++.++..+..+.+.|..+|++++.+++.+.+.                .+..++.+.+..+|+.|.|||+++ .|.+
T Consensus        95 ~~~~a~~G~l~~~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~-~~~~  173 (283)
T PRK00942         95 VVEMVLAGKVNKELVSLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISP-IGVG  173 (283)
T ss_pred             HHHHHHcCchHHHHHHHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcC-cEEC
Confidence            55555555666778889999999999999876421                134567899999999999999997 2221


Q ss_pred             ------CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHH
Q psy3759         556 ------FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFC  622 (844)
Q Consensus       556 ------~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a  622 (844)
                            ++++|++|+.+|..|+||+|+++|||||||++      ++++|++++++|+.+       +|+|..|+.+|..+
T Consensus       174 ~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~  247 (283)
T PRK00942        174 EDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAALDA  247 (283)
T ss_pred             CCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence                  35599999999999999999999999999986      367899999887755       58999999999998


Q ss_pred             HhCCC-CEEEEecCCcch-HHHHHcCCcccEEEEe
Q psy3759         623 RDQKL-PIRVFSIIKSGA-LKRVIEGKNEGTLVYE  655 (844)
Q Consensus       623 ~~~gi-~v~I~~g~~~~~-i~~~l~Ge~~GT~I~~  655 (844)
                      .+.|+ +++|++|..|++ |.+++.|+.+||.|.+
T Consensus       248 ~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~  282 (283)
T PRK00942        248 ARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP  282 (283)
T ss_pred             HHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence            88887 599999999999 8899999999999986

>PRK08210 aspartate kinase I; Reviewed

Probab=99.89  E-value=5.2e-23  Score=233.72  Aligned_cols=215  Identities=24%  Similarity=0.361  Sum_probs=163.6

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCc-hHH--------hhhcccc-ccCCCcchHHH
Q psy3759         423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNI--------CRGISNK-IQNIDRSTADY  492 (844)
Q Consensus       423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~--------~~~~~~~-~~~~~~~~~~~  492 (844)
                      ++|+|+  +|+++       -+++.+.+++++|+.+.+.|++++||||| |..        ..+.... ....++...+.
T Consensus         3 ~iViK~--GGs~l-------~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~~~~~~~~~~~   73 (403)
T PRK08210          3 IIVQKF--GGTSV-------STEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSEISKREQDL   73 (403)
T ss_pred             eEEEeE--CCccc-------CCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhccCCChHHHHH
Confidence            456775  44433       24456889999999999999999988865 221        1111110 11223444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---C---C
Q psy3759         493 MGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---F---F  557 (844)
Q Consensus       493 ~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~---~---~  557 (844)
                      +..........+++.+|..+|++++.+++.+...+         +..++.+.+..+++.|.|||++|+.|.+   .   +
T Consensus        74 l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l  153 (403)
T PRK08210         74 LMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTL  153 (403)
T ss_pred             HHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEe
Confidence            43333333566788999999999999998764211         2345678899999999999999975421   1   2


Q ss_pred             ---cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEE
Q psy3759         558 ---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRV  631 (844)
Q Consensus       558 ---s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I  631 (844)
                         ++|++|+.+|.+|+||++++||||||||++||+.+|++++|++++++|+.+   .|.+++|+.|+++|.++++|++|
T Consensus       154 ~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i  233 (403)
T PRK08210        154 GRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRI  233 (403)
T ss_pred             CCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEE
Confidence               489999999999999999999999999999999999999999999999877   79999999999999999999999


Q ss_pred             EecCCcchHHHHHcCCcccEEEEec
Q psy3759         632 FSIIKSGALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       632 ~~g~~~~~i~~~l~Ge~~GT~I~~~  656 (844)
                      .|++.+          ..||+|.+.
T Consensus       234 ~~~~~~----------~~gT~I~~~  248 (403)
T PRK08210        234 RSTYSD----------SPGTLITSL  248 (403)
T ss_pred             EecCCC----------cCCcEEEec
Confidence            998864          249999864

>PRK07431 aspartate kinase; Provisional

Probab=99.89  E-value=2.3e-22  Score=238.65  Aligned_cols=205  Identities=22%  Similarity=0.263  Sum_probs=161.2

Q ss_pred             cccchhhhhhhhhhhhhhhCCCeEEEEeCc-hHHhhhccccccCC-CcchHHHHHHHHH-HH--HHHHHHHHHHHcCCce
Q psy3759         442 NINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNI-DRSTADYMGMLAT-II--NSLALFDILNKSGIIS  516 (844)
Q Consensus       442 ~id~~~i~~~a~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~ll~~~L~~~gi~a  516 (844)
                      ..+.+.+++++++|+.+.+.|+++|||||| |.....+......+ ++...+...++.+ |+  +..+++.+|+.+|+++
T Consensus        13 ~~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~~~t~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a   92 (587)
T PRK07431         13 VGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEISSNPPRREMDMLLSTGEQVSIALLSMALHELGQPA   92 (587)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCe
Confidence            357889999999999999999999999996 54433332221111 2223333344433 33  4556667899999999


Q ss_pred             eEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCCC-----Cc------chHHHHHHHHHcCCcEEE
Q psy3759         517 HVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-----FT------TDTTAALRAAEIKAEIIL  576 (844)
Q Consensus       517 ~~l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~~-----~s------~D~lAa~lA~~l~Ad~Li  576 (844)
                      +++++.++...         ...++...+..+++.|.|||++|+.|...     .+      +|++|+++|.+|+||+++
T Consensus        93 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~  172 (587)
T PRK07431         93 ISLTGAQVGIVTESEHGRARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACE  172 (587)
T ss_pred             EEechhHcCeEecCCCCceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEE
Confidence            99998875322         22345678999999999999999766421     22      799999999999999999


Q ss_pred             EeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEE
Q psy3759         577 KATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV  653 (844)
Q Consensus       577 ilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I  653 (844)
                      +||||||||++||+.+|++++|++++++|+.+   .|.+++++.|+.+|.++|+|++|.|++.          +..||+|
T Consensus       173 i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~----------~~~GT~i  242 (587)
T PRK07431        173 IYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS----------DAPGTLV  242 (587)
T ss_pred             EEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCCC----------CCCCeEE
Confidence            99999999999999999999999999999877   6999999999999999999999999872          2359999


Q ss_pred             Eec
Q psy3759         654 YEI  656 (844)
Q Consensus       654 ~~~  656 (844)
                      .+.
T Consensus       243 ~~~  245 (587)
T PRK07431        243 TSP  245 (587)
T ss_pred             EeC
Confidence            865

>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

Probab=99.89  E-value=1.8e-22  Score=218.57  Aligned_cols=149  Identities=19%  Similarity=0.292  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHcCCceeEeehhchhhhh-------------hccchHHHHHHHhCCCEEEEeCCCCCC--C----C
Q psy3759         497 ATIINSLALFDILNKSGIISHVMSAISIEKFL-------------ESYIPLNAIKYLEEGKVVIFAGGIGNP--F----F  557 (844)
Q Consensus       497 ~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~-------------~~~~~~~l~~lL~~g~VPVv~G~~G~~--~----~  557 (844)
                      +...++.+++.+|+++|++++.+++.+...+.             .......+..+++.|.|||++||.|..  +    .
T Consensus       125 GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gfig~~~~g~~ttl  204 (298)
T cd04244         125 GERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATEDGAITTL  204 (298)
T ss_pred             hHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCccccCCCCCEEEe
Confidence            33347888999999999999999988763210             001112345667889999999976632  1    1


Q ss_pred             ---cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEE
Q psy3759         558 ---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRV  631 (844)
Q Consensus       558 ---s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I  631 (844)
                         .+|++|+.+|.+|+||.+++||||||||++||+.+|+++++++++++|+.+   +|++++|+.|+.+|.++|||++|
T Consensus       205 gRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i  284 (298)
T cd04244         205 GRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRV  284 (298)
T ss_pred             cCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEE
Confidence               389999999999999999999999999999999999999999999999987   69999999999999999999999


Q ss_pred             EecCCcchHHHHHcCCcccEEEE
Q psy3759         632 FSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       632 ~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      .|+++|+         ..||+|+
T Consensus       285 ~n~~~p~---------~~GT~I~  298 (298)
T cd04244         285 KNTFNPE---------APGTLIT  298 (298)
T ss_pred             eeCCCCC---------CCCCEeC
Confidence            9999884         4699984

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.

>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC)

Probab=99.88  E-value=1.4e-22  Score=215.88  Aligned_cols=192  Identities=19%  Similarity=0.239  Sum_probs=155.1

Q ss_pred             hhhhhhhhhhhhCCCeEEEEeCchHHhhhcccccc----------C-----CCcchHHHHHHHHHHHHHHHHHHHHHHcC
Q psy3759         449 KNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ----------N-----IDRSTADYMGMLATIINSLALFDILNKSG  513 (844)
Q Consensus       449 ~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~----------~-----~~~~~~~~~~~~~~~~~~~ll~~~L~~~g  513 (844)
                      ++++++|+.+   |.++|||||||.+.+.......          +     .++.+++.+..+. +..+..+.+.|.++|
T Consensus        14 ~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~-~~ln~~iv~~L~~~G   89 (257)
T cd04251          14 DKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVM-GLINKKIVARLHSLG   89 (257)
T ss_pred             HHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHH-HHHHHHHHHHHHhCC
Confidence            5789999987   8899999999966554332211          2     2556666777666 666777888999999


Q ss_pred             CceeEeehhchhh--------------------------hhhccchHHHHHHHhCCCEEEEeCCC----CC-CCCcchHH
Q psy3759         514 IISHVMSAISIEK--------------------------FLESYIPLNAIKYLEEGKVVIFAGGI----GN-PFFTTDTT  562 (844)
Q Consensus       514 i~a~~l~~~~~~~--------------------------~~~~~~~~~l~~lL~~g~VPVv~G~~----G~-~~~s~D~l  562 (844)
                      ++++++++.+.+.                          .+..++.+.+..+++.|+|||++++.    |. .++++|++
T Consensus        90 i~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~~  169 (257)
T cd04251          90 VKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDRA  169 (257)
T ss_pred             CCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeCcEECCCCcEEecCHHHH
Confidence            9999999976421                          13456789999999999999998742    21 24679999


Q ss_pred             HHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-----hccccchHHHHHHHHhCCC-CEEEEecCC
Q psy3759         563 AALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFSFCRDQKL-PIRVFSIIK  636 (844)
Q Consensus       563 Aa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-----~G~~v~~~~Aa~~a~~~gi-~v~I~~g~~  636 (844)
                      |+.+|.+|+||+|+|+|||||||++       +++|++++.+++.+     +|+|..|+.++..+.+.|+ +++|++|..
T Consensus       170 A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~  242 (257)
T cd04251         170 AAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARA  242 (257)
T ss_pred             HHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCC
Confidence            9999999999999999999999963       57899998877655     6999999999999999988 588999999


Q ss_pred             cchHHHHHcCCcccEEE
Q psy3759         637 SGALKRVIEGKNEGTLV  653 (844)
Q Consensus       637 ~~~i~~~l~Ge~~GT~I  653 (844)
                      |+++.++|.|+  ||+|
T Consensus       243 ~~~l~~~l~g~--gT~i  257 (257)
T cd04251         243 DSPISSALNGG--GTVI  257 (257)
T ss_pred             ccHHHHHHcCC--CcCC
Confidence            99999999985  9975

This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).

>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like

Probab=99.88  E-value=1.7e-22  Score=215.66  Aligned_cols=202  Identities=19%  Similarity=0.181  Sum_probs=160.4

Q ss_pred             chhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhcccccc-------C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy3759         445 SSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ-------N---IDRSTADYMGMLATIINSLALFDILNKSGI  514 (844)
Q Consensus       445 ~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi  514 (844)
                      +..+.+++++|+.+...|.++|||||||.+.+.+.....       +   .++.+++...++.++..+..+.++|.++|+
T Consensus        13 ~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln~~i~~~L~~~Gv   92 (256)
T cd04238          13 EELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVNKELVSLLNRAGG   92 (256)
T ss_pred             ccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHHHHHHHhCCC
Confidence            346678999999888889999999999866554333221       1   134455555555445667778999999999


Q ss_pred             ceeEeehhchh-----------------hhhhccchHHHHHHHhCCCEEEEeCCCCCC------CCcchHHHHHHHHHcC
Q psy3759         515 ISHVMSAISIE-----------------KFLESYIPLNAIKYLEEGKVVIFAGGIGNP------FFTTDTTAALRAAEIK  571 (844)
Q Consensus       515 ~a~~l~~~~~~-----------------~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~------~~s~D~lAa~lA~~l~  571 (844)
                      +++++++.+..                 ..+..++.+.+..+++.|.|||++|. |.+      +.++|++|+++|..|+
T Consensus        93 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~-~~~~~g~~~~~~~D~~A~~lA~~l~  171 (256)
T cd04238          93 KAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPI-AVDEDGETYNVNADTAAGAIAAALK  171 (256)
T ss_pred             CCCCcccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCc-EECCCCcEEEECHHHHHHHHHHHcC
Confidence            99999998642                 12345688999999999999999972 221      3459999999999999


Q ss_pred             CcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHHHhCCC-CEEEEecCCcchHHHH
Q psy3759         572 AEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRV  643 (844)
Q Consensus       572 Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a~~~gi-~v~I~~g~~~~~i~~~  643 (844)
                      ||+|+++|||||||++      ++++|++++++|+.+       +|+|..|+.+|..+.+.|+ +++|++|..|++|.++
T Consensus       172 a~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~  245 (256)
T cd04238         172 AEKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLE  245 (256)
T ss_pred             CCEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHH
Confidence            9999999999999987      267899999877654       5899999999998888876 5999999999999999


Q ss_pred             HcC-CcccEEE
Q psy3759         644 IEG-KNEGTLV  653 (844)
Q Consensus       644 l~G-e~~GT~I  653 (844)
                      |.| +..||+|
T Consensus       246 l~~~~~~GT~i  256 (256)
T cd04238         246 LFTDEGIGTMI  256 (256)
T ss_pred             HhcCCCCCCCC
Confidence            998 5689976

Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis

Probab=99.88  E-value=4.5e-22  Score=211.81  Aligned_cols=201  Identities=17%  Similarity=0.185  Sum_probs=152.7

Q ss_pred             hhhhhhhhhhhhhhh-CCCeEEEEeCchHHhhhcccccc-------C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy3759         446 SIIKNIISEISEIVS-CGIELAIVIGGGNICRGISNKIQ-------N---IDRSTADYMGMLATIINSLALFDILNKSGI  514 (844)
Q Consensus       446 ~~i~~~a~~I~~l~~-~G~~vVIVhGGG~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi  514 (844)
                      +.+++++++|+.+.. .|.++|||||||.+...+.....       +   .+...++...+...+..+..+.+.+.++|+
T Consensus        14 ~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~n~~lv~~l~~~Gv   93 (252)
T cd04249          14 AALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTANKQLMAQAIKAGL   93 (252)
T ss_pred             hhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcccHHHHHHHHhCCC
Confidence            568889999998754 57899999999966443222211       1   244455555544445556666777779999


Q ss_pred             ceeEeehhchhh--------------hhhccchHHHHHHHhCCCEEEEeCC----CC-CCCCcchHHHHHHHHHcCCcEE
Q psy3759         515 ISHVMSAISIEK--------------FLESYIPLNAIKYLEEGKVVIFAGG----IG-NPFFTTDTTAALRAAEIKAEII  575 (844)
Q Consensus       515 ~a~~l~~~~~~~--------------~~~~~~~~~l~~lL~~g~VPVv~G~----~G-~~~~s~D~lAa~lA~~l~Ad~L  575 (844)
                      +++++++.+.+.              .+..++.+.+..+++.|+|||++|.    .| ..++++|++|+++|..|+|| +
T Consensus        94 ~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~  172 (252)
T cd04249          94 KPVGLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLMNVNADQAATAIAQLLNAD-L  172 (252)
T ss_pred             CceeeeccCCCEEEEEEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCEeeecHHHHHHHHHHHcCCC-E
Confidence            999999886421              1345778999999999999999972    11 12466999999999999999 6


Q ss_pred             EEeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHH-HhCCCCEEEEecCCcchHHHHHcCC
Q psy3759         576 LKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFC-RDQKLPIRVFSIIKSGALKRVIEGK  647 (844)
Q Consensus       576 iilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a-~~~gi~v~I~~g~~~~~i~~~l~Ge  647 (844)
                      +++|||||||++||      ++|++++.+|+.+       +|||..++.++..+ ...+++++|++|..|+.+.+++.|+
T Consensus       173 i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l~g~  246 (252)
T cd04249         173 VLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALLAGE  246 (252)
T ss_pred             EEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHHcCC
Confidence            78999999998765      4788888776644       58898898876665 4556899999999999999999999


Q ss_pred             cccEEE
Q psy3759         648 NEGTLV  653 (844)
Q Consensus       648 ~~GT~I  653 (844)
                      .+||+|
T Consensus       247 ~~GT~I  252 (252)
T cd04249         247 PVGTKI  252 (252)
T ss_pred             CCCcCC
Confidence            999986

There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).

>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

Probab=99.87  E-value=1.8e-21  Score=210.00  Aligned_cols=153  Identities=22%  Similarity=0.252  Sum_probs=126.3

Q ss_pred             HHHHHHH--HHHHHHHHHHHHcCCceeEeehhchhhhh----------------hccchHHHHHHHhC-CCEEEEeCCCC
Q psy3759         493 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKFL----------------ESYIPLNAIKYLEE-GKVVIFAGGIG  553 (844)
Q Consensus       493 ~~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~~~----------------~~~~~~~l~~lL~~-g~VPVv~G~~G  553 (844)
                      ..+++.|  .++.+++.+|++.|+++..+.+.++....                .......+...+.. +.|||++||.|
T Consensus       112 d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~a~v~~~~~~~~l~~~l~~~~~v~Vv~GFig  191 (295)
T cd04259         112 AEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEYADALLQKRLADGAQLIITQGFIA  191 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeecccccccccccccceehhhhhHHHHHHHHhcCCceeEeCCcee
Confidence            3444444  47889999999999999999887651110                11233456666655 67999999877


Q ss_pred             CC--C-C------cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHH
Q psy3759         554 NP--F-F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSF  621 (844)
Q Consensus       554 ~~--~-~------s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~  621 (844)
                      ..  + +      .+|++|+.+|.+++||.+++||||||||++||+.+|++++|++++++|+.+   .|++++|+.|+.+
T Consensus       192 ~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~  271 (295)
T cd04259         192 RNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPP  271 (295)
T ss_pred             eCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeCHHHHHHHHHcCCcccCHHHHHH
Confidence            43  1 1      299999999999999999999999999999999999999999999999877   7999999999999


Q ss_pred             HHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         622 CRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       622 a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      |.++|+|++|.|+++|+         ..||+|+
T Consensus       272 a~~~~ipi~i~~~~~p~---------~~GT~I~  295 (295)
T cd04259         272 ARRANIPMVVRSTERPE---------LSGTLIT  295 (295)
T ss_pred             HHHCCCCEEEEeCCCCC---------CCCcEeC
Confidence            99999999999999884         5799984

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.

>PRK12352 putative carbamate kinase; Reviewed

Probab=99.87  E-value=1.6e-21  Score=210.74  Aligned_cols=226  Identities=17%  Similarity=0.159  Sum_probs=161.4

Q ss_pred             hHHHHHHHhhhhhhhcCC-CCcc--cchhhhhhhhhhhhhhhCCCeEEEEeCchHHh---hhccccc---cCCCcchHHH
Q psy3759         422 SLAVLKAQQLGEALMKGD-AYNI--NSSIIKNIISEISEIVSCGIELAIVIGGGNIC---RGISNKI---QNIDRSTADY  492 (844)
Q Consensus       422 ~~iv~k~~~~~~~l~~g~-~~~i--d~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~---~~~~~~~---~~~~~~~~~~  492 (844)
                      +++|+++  +|+++...+ ...+  ....+..++++|+.|...|+++|||||||...   +......   .+++..+++.
T Consensus         3 k~iVI~l--GGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~~g~rvt~~~~   80 (316)
T PRK12352          3 ELVVVAI--GGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLAN   80 (316)
T ss_pred             cEEEEEE--ChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCcccccCCCCCCCHHH
Confidence            3567776  777765321 1111  23578999999999999999999999998322   2122222   2345566665


Q ss_pred             HHHHHHHH----HHHHHHHHHHHcCCce-------eEeehhchhh-----------------------------------
Q psy3759         493 MGMLATII----NSLALFDILNKSGIIS-------HVMSAISIEK-----------------------------------  526 (844)
Q Consensus       493 ~~~~~~~~----~~~ll~~~L~~~gi~a-------~~l~~~~~~~-----------------------------------  526 (844)
                      +...+.+.    .+..|+..|..+|..+       +.+++.|...                                   
T Consensus        81 ~v~~~~g~i~~~i~~~L~~~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G  160 (316)
T PRK12352         81 CVADTQGGIGYLIQQALNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRG  160 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCC
Confidence            55555543    4555666688777443       3445322100                                   


Q ss_pred             ---------hhhccchHHHHHHHhCCCEEEEeCCCCCC--------------CCcchHHHHHHHHHcCCcEEEEeecccc
Q psy3759         527 ---------FLESYIPLNAIKYLEEGKVVIFAGGIGNP--------------FFTTDTTAALRAAEIKAEIILKATKVDG  583 (844)
Q Consensus       527 ---------~~~~~~~~~l~~lL~~g~VPVv~G~~G~~--------------~~s~D~lAa~lA~~l~Ad~LiilTDVdG  583 (844)
                               .++.++.+.+..++++|+|||.+|+.|.|              ++++|++|+.+|.+|+||+|+|+|||||
T Consensus       161 ~rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~G  240 (316)
T PRK12352        161 YRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEK  240 (316)
T ss_pred             eEEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchh
Confidence                     04456788999999999996666544443              1448999999999999999999999999


Q ss_pred             cccCCCCCCCCceeecccCHHHHHh--------hccccchHHHHHHHHhCCC-CEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         584 IYNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       584 Vyt~dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~~~Aa~~a~~~gi-~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      ||+++|+  |++++|++++..++.+        .|+|.+|+.||..+.+.|+ +++|++   ++.+.++|.|+ .||+|.
T Consensus       241 V~~d~~~--~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i~~al~g~-~GT~I~  314 (316)
T PRK12352        241 VCIHFGK--PQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHII  314 (316)
T ss_pred             hccCCCC--CCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHHHHHHcCC-CCeEEE
Confidence            9988765  6788999999988755        3789999998866666665 688885   77799999998 899997


Q ss_pred             e
Q psy3759         655 E  655 (844)
Q Consensus       655 ~  655 (844)
                      .
T Consensus       315 ~  315 (316)
T PRK12352        315 K  315 (316)
T ss_pred             e
Confidence            4

>PRK09411 carbamate kinase; Reviewed

Probab=99.87  E-value=9.4e-22  Score=208.08  Aligned_cols=221  Identities=21%  Similarity=0.225  Sum_probs=167.3

Q ss_pred             HHHHHHhhhhhhhcCC-CCcccch--hhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhccccccCCCcchHHHHHHH
Q psy3759         424 AVLKAQQLGEALMKGD-AYNINSS--IIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDRSTADYMGML  496 (844)
Q Consensus       424 iv~k~~~~~~~l~~g~-~~~id~~--~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~~~~~~~~~~~~~~  496 (844)
                      +|+-+  +|.+++..+ +......  .++..|++|+.+.+. |++||+||.|    +....... ....++.++|.+++.
T Consensus         4 iVvAl--GGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~-~~~~~~~pld~~~a~   79 (297)
T PRK09411          4 LVVAL--GGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLA-WKEVEPYPLDVLVAE   79 (297)
T ss_pred             EEEEc--CchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHh-hcCCCCCCchhhhhh
Confidence            44444  677776432 2333333  788899999999887 9999999996    44333222 223478899999999


Q ss_pred             HHHHHHHHHHHHHHHcCCce--eE------eehhch---------h---------------------------------h
Q psy3759         497 ATIINSLALFDILNKSGIIS--HV------MSAISI---------E---------------------------------K  526 (844)
Q Consensus       497 ~~~~~~~ll~~~L~~~gi~a--~~------l~~~~~---------~---------------------------------~  526 (844)
                      ++|+.+++|+..|...++..  +.      +++.|-         +                                 .
T Consensus        80 sqG~iGy~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP~  159 (297)
T PRK09411         80 SQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQ  159 (297)
T ss_pred             cccHHHHHHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCCC
Confidence            99999999999998887543  11      111110         0                                 0


Q ss_pred             hhhccchHHHHHHHhCCCEEEEeCCCCCC----------CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCce
Q psy3759         527 FLESYIPLNAIKYLEEGKVVIFAGGIGNP----------FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAI  596 (844)
Q Consensus       527 ~~~~~~~~~l~~lL~~g~VPVv~G~~G~~----------~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~  596 (844)
                      ....++.+.+..++++|+|||.+|+.|.|          ++++|.+|+.||..|+||+|+|+|||||||++++  .|+++
T Consensus       160 P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~  237 (297)
T PRK09411        160 PRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWG--TPQQR  237 (297)
T ss_pred             CcceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCc
Confidence            02346788999999999998888765544          2459999999999999999999999999999764  47889


Q ss_pred             eecccCHHHHHh----hccccchHHHH-HHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         597 IYKKITFDEVIS----KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       597 ~I~~i~~~e~~~----~G~~v~~~~Aa-~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      +|++++.+++..    .|+|.+|+.|+ +++.+.|.+++|.+   ++.+.+++.|+ .||+|.
T Consensus       238 ~I~~it~~e~~~~~~~~GgM~pKVeAA~~~v~~~g~~a~I~~---l~~~~~~l~G~-~GT~I~  296 (297)
T PRK09411        238 AIRHATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGA---LSRIEETLAGE-AGTCIS  296 (297)
T ss_pred             CCCCcCHHHHHHhccCCCCcHHHHHHHHHHHHhCCCeEEECC---hhHHHHHHCCC-CCeEEe
Confidence            999999988865    69999999987 66666677888754   66788999998 699985

>TIGR00657 asp_kinases aspartate kinase

Probab=99.87  E-value=2.4e-21  Score=222.44  Aligned_cols=313  Identities=18%  Similarity=0.191  Sum_probs=205.5

Q ss_pred             CcccchhhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhcccccc-CCCc----------------------------
Q psy3759         441 YNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ-NIDR----------------------------  487 (844)
Q Consensus       441 ~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~-~~~~----------------------------  487 (844)
                      ..-+.+.++++++.|......|+++|+|||++    +.......... .-..                            
T Consensus        11 sv~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~   90 (441)
T TIGR00657        11 SVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIEILERLIPQAIAEELKR   90 (441)
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34567889999999998777899999999983    11111110000 0000                            


Q ss_pred             ----------chHHHHHHHHHHH--HHHHHHHHHHHcCCceeEeehhchhhh----------hhccchHHHHHHHhCCCE
Q psy3759         488 ----------STADYMGMLATII--NSLALFDILNKSGIISHVMSAISIEKF----------LESYIPLNAIKYLEEGKV  545 (844)
Q Consensus       488 ----------~~~~~~~~~~~~~--~~~ll~~~L~~~gi~a~~l~~~~~~~~----------~~~~~~~~l~~lL~~g~V  545 (844)
                                .......+++.|+  ++.+++.+|+++|++++.+++.+....          ...++...+..+++.|.|
T Consensus        91 ~~~~~~~~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~~~~v  170 (441)
T TIGR00657        91 LLDAELVLEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEGII  170 (441)
T ss_pred             HHHHHHhhhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHhcCCE
Confidence                      0112234445554  677899999999999999998875221          345677889999999999


Q ss_pred             EEEeCCCCCC---CC------cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hcccc
Q psy3759         546 VIFAGGIGNP---FF------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEI  613 (844)
Q Consensus       546 PVv~G~~G~~---~~------s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v  613 (844)
                      ||++|+.|.+   ..      .+|++|+.+|.+|+||+|++||||||||++||+.+|+++++++++++|+.+   .|.++
T Consensus       171 pVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v  250 (441)
T TIGR00657       171 PVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKV  250 (441)
T ss_pred             EEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCcc
Confidence            9999975421   11      289999999999999999999999999999999999999999999999877   79999


Q ss_pred             chHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEecch-h---hh------hhh--hhhHHHhHHHHHHHHHH
Q psy3759         614 MDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYI-M---II------SDI--KKNTKQKMLNTIKILKE  681 (844)
Q Consensus       614 ~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~~~-m---~~------~~i--~~~~~~~m~~~v~~~~~  681 (844)
                      +++.|+.+|.++++|++|.|++.|+         ..||+|.+... +   .+      +.+  +.-....|.. ...+.+
T Consensus       251 ~~~~a~~~~~~~~i~i~i~~~~~~~---------~~GT~I~~~~~~~~~~~i~~It~~~~v~~Isv~g~~~~~-~g~la~  320 (441)
T TIGR00657       251 LHPRTLEPAMRAKIPIVVKSTFNPE---------APGTLIVASTKEMEEPIVKGLSLDRNQARVTVSGLGMKG-PGFLAR  320 (441)
T ss_pred             cCHHHHHHHHHcCCeEEEecCCCCC---------CCceEEEeCCCccccCccceEEEeCCEEEEEEECCCCCC-ccHHHH
Confidence            9999999999999999999998873         46999987521 1   01      111  0000111221 112222


Q ss_pred             HHHhhhcCCCcccccc------eeEEEecccccc-----------cceeeeeeccCC-ceEEEe---cC-CcccHHHHHH
Q psy3759         682 NLKKVRTGRANIGMLD------NIQVKYHEHLTK-----------LLKIANITLFNS-HTISIQ---PF-EKEMSSIIKK  739 (844)
Q Consensus       682 ~l~~irtgr~~p~~ld------~i~V~~~g~~~~-----------l~~~A~i~~~~~-~~l~i~---~~-d~~~~~~i~k  739 (844)
                      =|..+..-..++.++.      ++.+-.......           ...+..|++.++ ..+.|.   .+ .+.....|.+
T Consensus       321 if~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~~~~~~~~~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~  400 (441)
T TIGR00657       321 VFGALAEAGINVDLITQSSSETSISFTVDKEDADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVASKIFE  400 (441)
T ss_pred             HHHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHHHHHHHHHHHHhcCcceEEEcCCeEEEEEEcCCCCCCCchHHHHHH
Confidence            2233333334444442      233333222111           122344555433 233331   12 4788889999


Q ss_pred             HHHhcCCCCcce-ecCCeeEEeCCC
Q psy3759         740 AINEANLGLNPT-IQGNIIYVSIPP  763 (844)
Q Consensus       740 Ai~~s~l~~~p~-~~~~~i~v~iP~  763 (844)
                      ++.+.++++.-. ..+..|.+.++.
T Consensus       401 ~La~~~Inv~~i~~se~~Is~vV~~  425 (441)
T TIGR00657       401 ALAQNGINIEMISSSEINISFVVDE  425 (441)
T ss_pred             HHHHCCCCEEEEEecCCcEEEEEeH
Confidence            998777776544 345677777764

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK12354 carbamate kinase; Reviewed

Probab=99.87  E-value=1.1e-21  Score=209.47  Aligned_cols=224  Identities=21%  Similarity=0.182  Sum_probs=163.1

Q ss_pred             HHHHHHhhhhhhhcC-CCCccc--chhhhhhhhhhhhhhhCCCeEEEEeCchHH-h--hhccccccCCCcchHHHHHHHH
Q psy3759         424 AVLKAQQLGEALMKG-DAYNIN--SSIIKNIISEISEIVSCGIELAIVIGGGNI-C--RGISNKIQNIDRSTADYMGMLA  497 (844)
Q Consensus       424 iv~k~~~~~~~l~~g-~~~~id--~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~-~--~~~~~~~~~~~~~~~~~~~~~~  497 (844)
                      +|+.+  +|++++.. .+....  .+.++..|++|+++.+ |+++||+||+|.+ .  +.........++.+++.+.+..
T Consensus         3 iVial--GGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~pl~~~~a~s   79 (307)
T PRK12354          3 IVVAL--GGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYKDVTPYPLDVLGAET   79 (307)
T ss_pred             EEEEe--ccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhcCCCCCCcchhcccc
Confidence            45555  67777653 334444  3488899999999988 9999999999854 2  1112222223678889999999


Q ss_pred             HHHHHHHHHHHHHHcC----CceeE----eehhc---------hhh---------------------------------h
Q psy3759         498 TIINSLALFDILNKSG----IISHV----MSAIS---------IEK---------------------------------F  527 (844)
Q Consensus       498 ~~~~~~ll~~~L~~~g----i~a~~----l~~~~---------~~~---------------------------------~  527 (844)
                      +++.++++++.|...=    +..+.    +...+         ++.                                 .
T Consensus        80 qg~iGy~l~q~l~~~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg~g~rrVv~SP~P  159 (307)
T PRK12354         80 EGMIGYMLEQELGNLLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDGDYFRRVVPSPRP  159 (307)
T ss_pred             cchHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecCCceEEEecCCCC
Confidence            9999999888854322    22211    11110         000                                 0


Q ss_pred             hhccchHHHHHHHhCCCEEEEeCCCCCCC--------------CcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCC
Q psy3759         528 LESYIPLNAIKYLEEGKVVIFAGGIGNPF--------------FTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCL  593 (844)
Q Consensus       528 ~~~~~~~~l~~lL~~g~VPVv~G~~G~~~--------------~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~  593 (844)
                      ...++.+.+..++++|+|||.+|+.|.|.              +++|++|++||.+++||+|+|+|||||||++++  .|
T Consensus       160 ~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p  237 (307)
T PRK12354        160 KRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KP  237 (307)
T ss_pred             cceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CC
Confidence            11256889999999999988887766551              237999999999999999999999999999865  37


Q ss_pred             CceeecccCHHHHHh----hccccchHHHHHH-HHhCCCCEEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759         594 SAIIYKKITFDEVIS----KKLEIMDSTAFSF-CRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       594 ~a~~I~~i~~~e~~~----~G~~v~~~~Aa~~-a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  656 (844)
                      ++++|++++.+++.+    .|+|.+|+.|+.. +.+.+.+++|.   .++.+.++|.|+ .||+|.+.
T Consensus       238 ~~k~i~~it~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~---~~~~l~~al~G~-~GT~I~~~  301 (307)
T PRK12354        238 TQRAIAQATPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIG---SLEDIQAILAGE-AGTRISPE  301 (307)
T ss_pred             CCeECCCCCHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEEC---CHHHHHHHHCCC-CceEEecC
Confidence            899999999988876    6899999998854 45556567774   356789999997 79999874

>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

Probab=99.87  E-value=5.1e-21  Score=205.34  Aligned_cols=152  Identities=19%  Similarity=0.228  Sum_probs=130.8

Q ss_pred             HHHHHH--HHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCCC------
Q psy3759         494 GMLATI--INSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNPF------  556 (844)
Q Consensus       494 ~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~~------  556 (844)
                      .+++.|  .++.+|+.+|+..|+++..+++.+++..         +.....+.+.+.++.+.|||++||.|.+.      
T Consensus       114 ~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~tt  193 (288)
T cd04245         114 ALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDIKT  193 (288)
T ss_pred             HHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhCCCEEEEeCccccCCCCCEEE
Confidence            444444  4788999999999999999998876322         11225677888888899999999988641      


Q ss_pred             ---CcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEE
Q psy3759         557 ---FTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIR  630 (844)
Q Consensus       557 ---~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~  630 (844)
                         -++|++|+.+|.+|+||.+.+|||||||||+||+.+|+|+.+++++++|+.+   .|..++++.|+.+|+++++|++
T Consensus       194 LgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~Ipi~  273 (288)
T cd04245         194 FSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPIN  273 (288)
T ss_pred             cCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCCCcEE
Confidence               2399999999999999999999999999999999999999999999999988   7999999999999999999999


Q ss_pred             EEecCCcchHHHHHcCCcccEEEE
Q psy3759         631 VFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       631 I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      |.|.++|+         ..||+|+
T Consensus       274 v~n~~~p~---------~~GT~I~  288 (288)
T cd04245         274 IKNTNHPE---------APGTLIV  288 (288)
T ss_pred             EeeCCCCC---------CCCceeC
Confidence            99999885         4699984

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.

>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

Probab=99.86  E-value=6.8e-21  Score=205.57  Aligned_cols=153  Identities=22%  Similarity=0.312  Sum_probs=126.4

Q ss_pred             HHHHHHH--HHHHHHHHHHHHcCCceeEeehhchh----hh-----hhccchHHHHHHHhC-CCEEEEeCCCCCC--CCc
Q psy3759         493 MGMLATI--INSLALFDILNKSGIISHVMSAISIE----KF-----LESYIPLNAIKYLEE-GKVVIFAGGIGNP--FFT  558 (844)
Q Consensus       493 ~~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~----~~-----~~~~~~~~l~~lL~~-g~VPVv~G~~G~~--~~s  558 (844)
                      ..+++.|  .++.+|+.+|++.|+++..+++.++-    ..     ........+..++.. +.|||++||.|..  +.+
T Consensus       118 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~  197 (294)
T cd04257         118 AKVLSFGERLSARLLSALLNQQGLDAAWIDARELIVTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGET  197 (294)
T ss_pred             hhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHeeEecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCE
Confidence            3444444  47889999999999999999887641    00     111224566666665 8999999987732  211


Q ss_pred             -------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCC
Q psy3759         559 -------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP  628 (844)
Q Consensus       559 -------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~  628 (844)
                             +|++|+++|..++||.+++|||||||||+||+.+|+|++|++++++|+.+   .|.++.++.|+.+|.++|+|
T Consensus       198 ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ip  277 (294)
T cd04257         198 TTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIP  277 (294)
T ss_pred             EECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCC
Confidence                   79999999999999999999999999999999999999999999999887   79999999999999999999


Q ss_pred             EEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         629 IRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       629 v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      ++|.|+++|+         ..||+|+
T Consensus       278 i~i~~~~~p~---------~~GT~I~  294 (294)
T cd04257         278 ILIKNTFNPE---------APGTLIS  294 (294)
T ss_pred             EEEeeCCCCC---------CCCCEeC
Confidence            9999999884         5799984

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act

>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families

Probab=99.86  E-value=1.1e-21  Score=207.62  Aligned_cols=203  Identities=21%  Similarity=0.262  Sum_probs=148.4

Q ss_pred             HHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCC----------CcchHHH
Q psy3759         423 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNI----------DRSTADY  492 (844)
Q Consensus       423 ~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~----------~~~~~~~  492 (844)
                      ++|+|+  +|+++. +.+    .. +.+++++|+.+.+.|+++|||||||.+...+.....-.          +......
T Consensus         2 ~~ViK~--GGs~l~-~~~----~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   73 (242)
T PF00696_consen    2 TIVIKL--GGSSLT-DKD----EE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPKFVDGSRVTDIETGLI   73 (242)
T ss_dssp             EEEEEE---HHGHS-SHS----HH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTSEETHHCHBHHHHHHH
T ss_pred             eEEEEE--CchhhC-Cch----HH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCcccchhhhhhhhhhhHH
Confidence            356675  555543 222    34 89999999999999999999999997666555442100          1111222


Q ss_pred             HHHHHHHHHHH-----HHHHHHHHcCCceeEeehhchhhhh-----hccchHHHHHHHhCCCEEEEeCCCC-----C---
Q psy3759         493 MGMLATIINSL-----ALFDILNKSGIISHVMSAISIEKFL-----ESYIPLNAIKYLEEGKVVIFAGGIG-----N---  554 (844)
Q Consensus       493 ~~~~~~~~~~~-----ll~~~L~~~gi~a~~l~~~~~~~~~-----~~~~~~~l~~lL~~g~VPVv~G~~G-----~---  554 (844)
                      ....+....+.     .+.+.+..++..++.+.+.+.+...     ..++...+..+|++|.|||++|+.+     .   
T Consensus        74 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~  153 (242)
T PF00696_consen   74 ITMAAAAELNRDALLDEIVSAGERLGAHAVGLSLSDGGISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEVTT  153 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTHHEEEHHHTGGTEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTEEE
T ss_pred             HHHHHhhccccchhHHHHHHhhhhhhHHHHhhhhhcccchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCccc
Confidence            22332222233     5666788889888877766643221     2467889999999999999998542     1   


Q ss_pred             -CCCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh--------hccccchH-HHHHHHHh
Q psy3759         555 -PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDS-TAFSFCRD  624 (844)
Q Consensus       555 -~~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~~-~Aa~~a~~  624 (844)
                       .+.++|++|+.+|.+|+|+.|+++|||||||++||+.+|++++|++++++|+.+        .|||..+. .|.+.+.+
T Consensus       154 ~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~  233 (242)
T PF00696_consen  154 LGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEE  233 (242)
T ss_dssp             EEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Confidence             245699999999999999999999999999999999999999999999999876        46666655 56677777


Q ss_pred             CCCCEEEEe
Q psy3759         625 QKLPIRVFS  633 (844)
Q Consensus       625 ~gi~v~I~~  633 (844)
                      ++++++|+|
T Consensus       234 ~~~~v~I~n  242 (242)
T PF00696_consen  234 GGIPVHIIN  242 (242)
T ss_dssp             TTSEEEEEE
T ss_pred             CCCcEEEeC
Confidence            789999986

In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....

>PRK08373 aspartate kinase; Validated

Probab=99.86  E-value=6.1e-21  Score=208.69  Aligned_cols=156  Identities=24%  Similarity=0.313  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhh----h--------hhccchHHHHHHHhCCCEEEEeCCCCCC-C
Q psy3759         490 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEK----F--------LESYIPLNAIKYLEEGKVVIFAGGIGNP-F  556 (844)
Q Consensus       490 ~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~----~--------~~~~~~~~l~~lL~~g~VPVv~G~~G~~-~  556 (844)
                      .|.........++.+++.+|+.+|+++..++++++-.    .        ....+.+.+..+++.|.|||++|+.|+. +
T Consensus       102 ~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G  181 (341)
T PRK08373        102 RDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKKSKRNVKILYELLERGRVPVVPGFIGNLNG  181 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeechhhhhhhHHHHHHHHhCCcEEEEeCCccCCCC
Confidence            3444444444578889999999999999999876511    0        1123457788889999999999988743 2


Q ss_pred             -C------cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCC
Q psy3759         557 -F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQK  626 (844)
Q Consensus       557 -~------s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~g  626 (844)
                       .      ++|++|+.+|.+|+||.++++|||||||++||+.+|+|++|++++++|+.+   .|+.++++.|.++|.+ +
T Consensus       182 ~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~~-~  260 (341)
T PRK08373        182 FRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG-K  260 (341)
T ss_pred             eEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHHc-C
Confidence             1      279999999999999999999999999999999999999999999999987   7999999999999999 9


Q ss_pred             CCEEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759         627 LPIRVFSIIKSGALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       627 i~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  656 (844)
                      +|++|.|.++|          ..||+|++.
T Consensus       261 Ipi~v~~t~~~----------~~GT~I~~~  280 (341)
T PRK08373        261 IPIIFGRTRDW----------RMGTLVSNE  280 (341)
T ss_pred             CcEEEecCCCC----------CCCcEEecC
Confidence            99999998765          259999764

>PRK06291 aspartate kinase; Provisional

Probab=99.86  E-value=1.1e-20  Score=217.84  Aligned_cols=157  Identities=22%  Similarity=0.296  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hh----ccchHHHHHHHhCCCEEEEeCCCCCC--
Q psy3759         491 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LE----SYIPLNAIKYLEEGKVVIFAGGIGNP--  555 (844)
Q Consensus       491 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~----~~~~~~l~~lL~~g~VPVv~G~~G~~--  555 (844)
                      |.....+...++.+|+.+|+++|+++..+++.+.+.+         +.    ......+..+++.|.|||++|+.|..  
T Consensus       123 d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~~  202 (465)
T PRK06291        123 DYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERLEPLLKEGVIPVVTGFIGETEE  202 (465)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcCCC
Confidence            3333333344788999999999999999998875211         00    11123566778899999999975522  


Q ss_pred             -C---C---cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhC
Q psy3759         556 -F---F---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQ  625 (844)
Q Consensus       556 -~---~---s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~  625 (844)
                       .   .   .+|++|+.+|.+|+||.+++||||||||++||+.+|+++++++++++|+.+   .|++++|+.|+.+|.++
T Consensus       203 g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~  282 (465)
T PRK06291        203 GIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEK  282 (465)
T ss_pred             CCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHHHc
Confidence             1   2   389999999999999999999999999999999999999999999999887   69999999999999999


Q ss_pred             CCCEEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759         626 KLPIRVFSIIKSGALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       626 gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  656 (844)
                      |+|++|.|+++|+         ..||+|.+.
T Consensus       283 ~i~i~i~~~~~~~---------~~gt~i~~~  304 (465)
T PRK06291        283 GIPVRVKNTFNPE---------FPGTLITSD  304 (465)
T ss_pred             CCcEEEecCCCCC---------CCceEEEec
Confidence            9999999999874         469999864

>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

Probab=99.85  E-value=1.2e-20  Score=203.64  Aligned_cols=153  Identities=26%  Similarity=0.333  Sum_probs=126.3

Q ss_pred             HHHHHHH--HHHHHHHHHHHHcCCceeEeehhchhh----h---hhcc--chHHHHHHHhC-CCEEEEeCCCCCC--CCc
Q psy3759         493 MGMLATI--INSLALFDILNKSGIISHVMSAISIEK----F---LESY--IPLNAIKYLEE-GKVVIFAGGIGNP--FFT  558 (844)
Q Consensus       493 ~~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~----~---~~~~--~~~~l~~lL~~-g~VPVv~G~~G~~--~~s  558 (844)
                      ..+++.|  .++.+++.+|.+.|+++..+++.++-.    .   ....  ....+..++.. +.|||++||.|..  +.+
T Consensus       117 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~  196 (293)
T cd04243         117 AEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLLTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGET  196 (293)
T ss_pred             hHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEEecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCE
Confidence            3444444  478899999999999999998865410    0   0011  13467777776 8999999987632  222


Q ss_pred             -------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCC
Q psy3759         559 -------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP  628 (844)
Q Consensus       559 -------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~  628 (844)
                             +|++|+++|..++||.+++|||||||||+||+.+|+|++|++++++|+.+   .|..+.++.|+.+|.++|+|
T Consensus       197 ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~  276 (293)
T cd04243         197 TTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIP  276 (293)
T ss_pred             EEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCc
Confidence                   79999999999999999999999999999999999999999999999887   79999999999999999999


Q ss_pred             EEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         629 IRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       629 v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      ++|.|+++|+         ..||+|+
T Consensus       277 i~i~~~~~p~---------~~GT~I~  293 (293)
T cd04243         277 IFIKNTFNPE---------APGTLIS  293 (293)
T ss_pred             EEEecCCCCC---------CCCCEeC
Confidence            9999999884         5799984

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-

>TIGR00761 argB acetylglutamate kinase

Probab=99.84  E-value=5.5e-21  Score=200.95  Aligned_cols=178  Identities=21%  Similarity=0.208  Sum_probs=140.0

Q ss_pred             hhhhhhhhhhhhhCCCeEEEEeCchHHhhhcccccc-------C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy3759         448 IKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ-------N---IDRSTADYMGMLATIINSLALFDILNKSGIISH  517 (844)
Q Consensus       448 i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~  517 (844)
                      +.+++++|+.++..|.++|||||||.+.........       +   .++.+++.......+..+..+.+.|.++|++++
T Consensus        15 ~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~~~i~~~L~~~G~~a~   94 (231)
T TIGR00761        15 LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVNKELVALLNKHGINAI   94 (231)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchHHHHHHHHHhCCCCcc
Confidence            889999999999999999999999855443222211       1   234445555555565666777889999999999


Q ss_pred             Eeehhchhhh---------------hhccchHHHHHHHhCCCEEEEeCCCCCC------CCcchHHHHHHHHHcCCcEEE
Q psy3759         518 VMSAISIEKF---------------LESYIPLNAIKYLEEGKVVIFAGGIGNP------FFTTDTTAALRAAEIKAEIIL  576 (844)
Q Consensus       518 ~l~~~~~~~~---------------~~~~~~~~l~~lL~~g~VPVv~G~~G~~------~~s~D~lAa~lA~~l~Ad~Li  576 (844)
                      ++++.+.+.+               +..++.+.+..++++|+|||++|. |.+      ++++|++|+.+|.+|+||+|+
T Consensus        95 ~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~-~~~~~g~~~~l~sD~~A~~lA~~l~A~~li  173 (231)
T TIGR00761        95 GLTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSL-ALTAEGQALNVNADTAAGALAAALGAEKLV  173 (231)
T ss_pred             cccCCCCCEEEEEECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCC-ccCCCCcEEEeCHHHHHHHHHHHcCCCEEE
Confidence            9988764211               345678999999999999999982 322      356999999999999999999


Q ss_pred             EeecccccccCCCCCCCCceeecccCHHHHHh-------hccccchHHHHHHHHhCCCCEEE
Q psy3759         577 KATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLPIRV  631 (844)
Q Consensus       577 ilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I  631 (844)
                      |+|||||||++||+     ++|++++.+|+.+       +|+|..|+.++..|.+.|++.+.
T Consensus       174 ~ltdv~Gv~~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~v~  230 (231)
T TIGR00761       174 LLTDVPGILNGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSVH  230 (231)
T ss_pred             EEECCCCeecCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCEEE
Confidence            99999999999874     6889998877655       59999999999999999997543

This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.

>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria

Probab=99.84  E-value=1.4e-20  Score=193.16  Aligned_cols=180  Identities=21%  Similarity=0.260  Sum_probs=142.1

Q ss_pred             hhhhhhhhhhhhhCCCeEEEEeCchHHhhhcccc--ccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchh
Q psy3759         448 IKNIISEISEIVSCGIELAIVIGGGNICRGISNK--IQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIE  525 (844)
Q Consensus       448 i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~  525 (844)
                      +..+.+.+..+.  |++++||.|||++++.+...  ..++++..+|+++++++.+++++|+..+...+            
T Consensus        12 ~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~~~~~~~~------------   77 (203)
T cd04240          12 AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLADLEPRLV------------   77 (203)
T ss_pred             HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccCCccc------------
Confidence            344555555442  88999999999985544332  44789999999999999999998764332221            


Q ss_pred             hhhhccchHHHHHHHhCCCEEEEeCC--------CCCC-CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCce
Q psy3759         526 KFLESYIPLNAIKYLEEGKVVIFAGG--------IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAI  596 (844)
Q Consensus       526 ~~~~~~~~~~l~~lL~~g~VPVv~G~--------~G~~-~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~  596 (844)
                          ..+...+...+..|.+||+.+.        .+.. ++|+|++|+++|..++|++|+++|||||||++|      ++
T Consensus        78 ----~~~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~  147 (203)
T cd04240          78 ----ARTLAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GK  147 (203)
T ss_pred             ----cCCHHHHHHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCC------Cc
Confidence                1234567778999999999884        1111 478999999999999999999999999999864      78


Q ss_pred             eecccCHHHHHhhccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCC-cccEEE
Q psy3759         597 IYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK-NEGTLV  653 (844)
Q Consensus       597 ~I~~i~~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge-~~GT~I  653 (844)
                      ++++++..++..  ...++..+++++.++|++++|+||..|+++.+++.|+ .+||+|
T Consensus       148 ~i~~i~~~e~~~--~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~I  203 (203)
T cd04240         148 LVNEIAAAELLG--ETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI  203 (203)
T ss_pred             CccccCHHHhCC--CCeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence            999999887643  4455777888899999999999999999999999998 789975

Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.

>PLN02551 aspartokinase

Probab=99.84  E-value=1.8e-19  Score=207.97  Aligned_cols=155  Identities=21%  Similarity=0.253  Sum_probs=127.9

Q ss_pred             HHHHHHH--HHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHH-----hCCCEEEEeCCCCCC-
Q psy3759         493 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYL-----EEGKVVIFAGGIGNP-  555 (844)
Q Consensus       493 ~~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~lL-----~~g~VPVv~G~~G~~-  555 (844)
                      ..+++.|  .++.+|+.+|++.|+++..+++.+++.+         +.......+...+     ..+.|||++||.|.. 
T Consensus       166 d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~  245 (521)
T PLN02551        166 DYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGW  245 (521)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCC
Confidence            4444444  4788999999999999999998876321         1122233343333     356899999998853 


Q ss_pred             --C-Cc------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHH
Q psy3759         556 --F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCR  623 (844)
Q Consensus       556 --~-~s------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~  623 (844)
                        + ++      +|++|+.+|.+|+|+.+.|||||||||++||+..|+|+++++++|+|+.+   +|..+++|.|..+|+
T Consensus       246 ~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~pa~  325 (521)
T PLN02551        246 KTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAR  325 (521)
T ss_pred             CCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHH
Confidence              2 22      99999999999999999999999999999999999999999999999988   799999999999999


Q ss_pred             hCCCCEEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759         624 DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       624 ~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  656 (844)
                      +++||++|.|.++|+         ..||+|++.
T Consensus       326 ~~~Ipi~vknt~~p~---------~~GT~I~~~  349 (521)
T PLN02551        326 EGDIPVRVKNSYNPT---------APGTLITKT  349 (521)
T ss_pred             HCCceEEEEecCCCC---------CCCcEEecc
Confidence            999999999998873         579999865

>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=99.84  E-value=3.9e-20  Score=198.86  Aligned_cols=157  Identities=26%  Similarity=0.334  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchh----hh-hhcc----chH---HHHHHHhCCCEEEEeCCCCCC-
Q psy3759         489 TADYMGMLATIINSLALFDILNKSGIISHVMSAISIE----KF-LESY----IPL---NAIKYLEEGKVVIFAGGIGNP-  555 (844)
Q Consensus       489 ~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~----~~-~~~~----~~~---~l~~lL~~g~VPVv~G~~G~~-  555 (844)
                      ..|.+...+...++.+|+.+|+..|+++..+++.++-    .. ...+    ...   .....+..+.|||++||.|.+ 
T Consensus       112 ~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~  191 (292)
T cd04258         112 SRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGSTE  191 (292)
T ss_pred             hHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEecCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCccccCC
Confidence            3455555555568999999999999999999887651    00 0011    111   222224567999999998854 


Q ss_pred             -C-Cc------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHh
Q psy3759         556 -F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRD  624 (844)
Q Consensus       556 -~-~s------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~  624 (844)
                       + ++      +|++|+++|..++|+.+++||||||||++||+.+|+|+++++++++|+.+   .|..++++.|..++.+
T Consensus       192 ~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~~  271 (292)
T cd04258         192 KGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIR  271 (292)
T ss_pred             CCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHHH
Confidence             2 22      79999999999999999999999999999999999999999999999988   7999999999999999


Q ss_pred             CCCCEEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         625 QKLPIRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       625 ~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      +++|++|.|.++|+         ..||+|+
T Consensus       272 ~~ipi~i~~~~~p~---------~~GT~I~  292 (292)
T cd04258         272 KNIPVFVGSSKDPE---------AGGTLIT  292 (292)
T ss_pred             cCCcEEEEeCCCCC---------CCCceeC
Confidence            99999999999874         5799984

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.

>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts

Probab=99.83  E-value=2.5e-20  Score=200.61  Aligned_cols=214  Identities=18%  Similarity=0.168  Sum_probs=160.7

Q ss_pred             hHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccc---ccc----C---CCcchHH
Q psy3759         422 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ----N---IDRSTAD  491 (844)
Q Consensus       422 ~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~----~---~~~~~~~  491 (844)
                      +++|+|+  +|+++..        +.++.++++|+.|.+.|+++|||||||.....+..   ...    +   .++.+++
T Consensus        19 ~~~VIKl--GG~ai~~--------~~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~RvT~~~~l~   88 (280)
T cd04237          19 KTFVIAF--GGEAVAH--------PNFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAALE   88 (280)
T ss_pred             CEEEEEE--ChHHhcC--------chHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcCcCCHHHHH
Confidence            4678886  5554431        24578999999999999999999999954443222   111    1   2566667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCceeEeeh-----hch------------------hhhhhccchHHHHHHHhCCCEEEE
Q psy3759         492 YMGMLATIINSLALFDILNKSGIISHVMSA-----ISI------------------EKFLESYIPLNAIKYLEEGKVVIF  548 (844)
Q Consensus       492 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~-----~~~------------------~~~~~~~~~~~l~~lL~~g~VPVv  548 (844)
                      ...++ .+..+..+.+.|+. |++++++++     .+.                  ...+..++.+.+..+|++|++||+
T Consensus        89 ~~~~~-~g~v~~~l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~ipv~  166 (280)
T cd04237          89 CVKEA-AGAVRLEIEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLL  166 (280)
T ss_pred             HHHHH-HHHHHHHHHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCEEEE
Confidence            76666 47778888888855 877764432     111                  001345788999999999999999


Q ss_pred             eCCC----CCC-CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh--------hccccch
Q psy3759         549 AGGI----GNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMD  615 (844)
Q Consensus       549 ~G~~----G~~-~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~  615 (844)
                      ++..    |.. ++++|.+|+.||.+|+||+|+|+|||||||++      ++++|++++.+++.+        +|+|.+|
T Consensus       167 ~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~K  240 (280)
T cd04237         167 SPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARL  240 (280)
T ss_pred             CCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHH
Confidence            8732    111 46899999999999999999999999999974      256888998766654        4899999


Q ss_pred             HHHHHHHHhCCC-CEEEEecCCcchHHHHHcC-CcccEEE
Q psy3759         616 STAFSFCRDQKL-PIRVFSIIKSGALKRVIEG-KNEGTLV  653 (844)
Q Consensus       616 ~~Aa~~a~~~gi-~v~I~~g~~~~~i~~~l~G-e~~GT~I  653 (844)
                      ++++..+.+.|+ +++|+++..|+.+...+.+ +..||.|
T Consensus       241 v~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i  280 (280)
T cd04237         241 LQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI  280 (280)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence            999999999999 7999999999998877664 4679975

Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains

Probab=99.83  E-value=8.9e-20  Score=196.94  Aligned_cols=154  Identities=23%  Similarity=0.321  Sum_probs=123.9

Q ss_pred             HHHHHH--HHHHHHHHHHHHcCCceeEeehhchhhh-------hhccc---hHHHHHHH-h-CCCEEEEeCCCCCCC---
Q psy3759         494 GMLATI--INSLALFDILNKSGIISHVMSAISIEKF-------LESYI---PLNAIKYL-E-EGKVVIFAGGIGNPF---  556 (844)
Q Consensus       494 ~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~~-------~~~~~---~~~l~~lL-~-~g~VPVv~G~~G~~~---  556 (844)
                      .+++.|  .++.+++.+|++.|+++..+++.++-..       ...+.   .+.+...+ . .+.|||++||.|...   
T Consensus       127 ~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~  206 (306)
T cd04247         127 LVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPGGL  206 (306)
T ss_pred             HHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEecCCCCC
Confidence            344444  4788899999999999999988765110       00111   11122222 2 578999999987432   


Q ss_pred             Cc------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCC
Q psy3759         557 FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKL  627 (844)
Q Consensus       557 ~s------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi  627 (844)
                      .+      +|++|+++|..|+|+++++|||||||||+||+.+|+|++|++++++|+.+   .|+++.|+.++.+|.+++|
T Consensus       207 ~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~I  286 (306)
T cd04247         207 LSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARI  286 (306)
T ss_pred             eEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcCC
Confidence            22      99999999999999999999999999999999999999999999999987   7999999999999999999


Q ss_pred             CEEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759         628 PIRVFSIIKSGALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       628 ~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  656 (844)
                      |++|.|.++|+         ..||+|+|+
T Consensus       287 pi~i~nt~~P~---------~~GT~I~~~  306 (306)
T cd04247         287 PIRIKNVENPR---------GEGTVIYPD  306 (306)
T ss_pred             cEEEecCCCCC---------CCCcEEcCC
Confidence            99999999884         579999873

Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.

>PRK09034 aspartate kinase; Reviewed

Probab=99.83  E-value=1e-19  Score=208.81  Aligned_cols=262  Identities=18%  Similarity=0.177  Sum_probs=177.2

Q ss_pred             HHHHHHH--HHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC--C-Cc
Q psy3759         493 MGMLATI--INSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP--F-FT  558 (844)
Q Consensus       493 ~~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~--~-~s  558 (844)
                      ..+++.|  .++.+|+.+|++.|+++..+++.+++.+         +.......+...+..+.|||++||.|..  + ++
T Consensus       113 d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~t  192 (454)
T PRK09034        113 DAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQIV  192 (454)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCCEE
Confidence            3444555  4788999999999999999998876322         1122345666666678899999998742  1 11


Q ss_pred             ------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCE
Q psy3759         559 ------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPI  629 (844)
Q Consensus       559 ------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v  629 (844)
                            +|++|+.+|.+|+||.+.+||||||||++||+..|+|+++++++++|+.+   .|..++++.|..+|.++++|+
T Consensus       193 tlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~Ipi  272 (454)
T PRK09034        193 TFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPI  272 (454)
T ss_pred             ecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCCCE
Confidence                  99999999999999999999999999999999999999999999999988   799999999999999999999


Q ss_pred             EEEecCCcchHHHHHcCCcccEEEEecch----hhh------hhh-hhhHHH-hHHHHHHHHHHHHHhhhcCCCcccccc
Q psy3759         630 RVFSIIKSGALKRVIEGKNEGTLVYEIYI----MII------SDI-KKNTKQ-KMLNTIKILKENLKKVRTGRANIGMLD  697 (844)
Q Consensus       630 ~I~~g~~~~~i~~~l~Ge~~GT~I~~~~~----m~~------~~i-~~~~~~-~m~~~v~~~~~~l~~irtgr~~p~~ld  697 (844)
                      +|.|.++|+         ..||+|++...    ..+      +.+ +-.+.. .|......+.+=|..+.....++.++.
T Consensus       273 ~v~~~~~p~---------~~GT~I~~~~~~~~~~~Vk~It~~~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~  343 (454)
T PRK09034        273 NIKNTNNPE---------DPGTLIVPDRDNKNKNPITGIAGDKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMP  343 (454)
T ss_pred             EEEcCCCCC---------CCccEEEeccccCccccceEEEecCCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEc
Confidence            999998873         46999986521    111      111 001111 133333444444444455566666663


Q ss_pred             e----eEEEecccccc-------cce------eeeeeccCC-ceEEEe---c-CCcccHHHHHHHHHhcCCCCccee---
Q psy3759         698 N----IQVKYHEHLTK-------LLK------IANITLFNS-HTISIQ---P-FEKEMSSIIKKAINEANLGLNPTI---  752 (844)
Q Consensus       698 ~----i~V~~~g~~~~-------l~~------~A~i~~~~~-~~l~i~---~-~d~~~~~~i~kAi~~s~l~~~p~~---  752 (844)
                      .    +.+-.......       +.+      ...|++.+. ..+.|.   . -++.....+..++.+.++++.-..   
T Consensus       344 ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        344 SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            3    44433322110       111      133444332 333331   1 246788888898887776664332   


Q ss_pred             cCCeeEEeCCC
Q psy3759         753 QGNIIYVSIPP  763 (844)
Q Consensus       753 ~~~~i~v~iP~  763 (844)
                      .+..|.+.+|.
T Consensus       424 Se~~Is~vV~~  434 (454)
T PRK09034        424 SEISIMFGVKN  434 (454)
T ss_pred             CcceEEEEEcH
Confidence            33567777765

>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]

Probab=99.83  E-value=6.3e-20  Score=188.48  Aligned_cols=224  Identities=23%  Similarity=0.282  Sum_probs=170.7

Q ss_pred             HHHHHHhhhhhhhcCCC---CcccchhhhhhhhhhhhhhhCCCeEEEEeCch----HHhhhccc--cccCCCcchHHHHH
Q psy3759         424 AVLKAQQLGEALMKGDA---YNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISN--KIQNIDRSTADYMG  494 (844)
Q Consensus       424 iv~k~~~~~~~l~~g~~---~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG----~~~~~~~~--~~~~~~~~~~~~~~  494 (844)
                      +|+-+  +|.+++.+++   .....+.++..+++|+.+...|+++||.||.|    ...+....  ...+.++.++|.++
T Consensus         3 iVvAL--GGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~   80 (312)
T COG0549           3 IVVAL--GGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLV   80 (312)
T ss_pred             EEEEe--cchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccccCCCCccHHHHh
Confidence            34444  6777776543   23345678899999999999999999999996    44333222  12356778999999


Q ss_pred             HHHHHHHHHHHHHH----HHHcCCc--e-eEee-----hhch--------------------------------------
Q psy3759         495 MLATIINSLALFDI----LNKSGII--S-HVMS-----AISI--------------------------------------  524 (844)
Q Consensus       495 ~~~~~~~~~ll~~~----L~~~gi~--a-~~l~-----~~~~--------------------------------------  524 (844)
                      ++++++.+++|...    |..+|++  . ..++     ..|-                                      
T Consensus        81 AmsQG~IGy~l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~R  160 (312)
T COG0549          81 AMSQGMIGYMLQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGYR  160 (312)
T ss_pred             HhhhhHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCee
Confidence            99999999999888    4455642  1 1111     1110                                      


Q ss_pred             -----hhhhhccchHHHHHHHhCCCEEEEeCCCCCCCC-------------cchHHHHHHHHHcCCcEEEEeeccccccc
Q psy3759         525 -----EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFF-------------TTDTTAALRAAEIKAEIILKATKVDGIYN  586 (844)
Q Consensus       525 -----~~~~~~~~~~~l~~lL~~g~VPVv~G~~G~~~~-------------s~D~lAa~lA~~l~Ad~LiilTDVdGVyt  586 (844)
                           +.....+..+.++.++++|.++|.+|+.|.|.+             ..|..|++||..++||.|+||||||+||-
T Consensus       161 RVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~  240 (312)
T COG0549         161 RVVPSPKPVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYV  240 (312)
T ss_pred             EecCCCCCccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchhee
Confidence                 000223466789999999999999998887732             28999999999999999999999999999


Q ss_pred             CCCCCCCCceeecccCHHHHHh--------hccccchHHH-HHHHHhCCCCEEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759         587 SDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTA-FSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE  655 (844)
Q Consensus       587 ~dP~~~~~a~~I~~i~~~e~~~--------~G~~v~~~~A-a~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~  655 (844)
                      ...+  |+.+.|++++.+|+.+        -|+|.+|++| +.++.+.|-+++|.+   .+++.++|.|+ .||.|++
T Consensus       241 n~gk--p~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~  312 (312)
T COG0549         241 NFGK--PNQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP  312 (312)
T ss_pred             cCCC--ccchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHHhccC-CCcEecC
Confidence            9987  7889999999999765        5899999975 578888788888875   56688999997 6999974

>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative

Probab=99.83  E-value=6e-20  Score=199.80  Aligned_cols=142  Identities=20%  Similarity=0.248  Sum_probs=116.7

Q ss_pred             HHHHHHHcCCceeEeehhchhhh------------hhccchHHHHHHHhCCCEEEEeCCCCCCC--C------cchHHHH
Q psy3759         505 LFDILNKSGIISHVMSAISIEKF------------LESYIPLNAIKYLEEGKVVIFAGGIGNPF--F------TTDTTAA  564 (844)
Q Consensus       505 l~~~L~~~gi~a~~l~~~~~~~~------------~~~~~~~~l~~lL~~g~VPVv~G~~G~~~--~------s~D~lAa  564 (844)
                      +++.|-..|+++..++++++-..            ....+.+.+..+++.|.|||++|+.|+..  .      ++|++|+
T Consensus       107 lSa~Lla~gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa  186 (327)
T TIGR02078       107 LSAVIFAEGINGKVVDPWDIFFAKGDFGNAFIDIKKSKRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAV  186 (327)
T ss_pred             HHHHHHHccCCcEEEcHHHHhccCCcCCceeechhhhHhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHH
Confidence            44444445889988887765110            11234567778899999999999877432  1      3899999


Q ss_pred             HHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHH
Q psy3759         565 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALK  641 (844)
Q Consensus       565 ~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~  641 (844)
                      .+|.+|+||.++++|||||||++||+.+|+|++|++++++|+.+   .|+.++|+.|+++|.++|+|++|.|.++|+   
T Consensus       187 ~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~~---  263 (327)
T TIGR02078       187 ALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVLFGRTRDWR---  263 (327)
T ss_pred             HHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHHCCCeEEEEeCCCcC---
Confidence            99999999999999999999999999999999999999999876   677789999999999999999999998752   


Q ss_pred             HHHcCCcccEEEEec
Q psy3759         642 RVIEGKNEGTLVYEI  656 (844)
Q Consensus       642 ~~l~Ge~~GT~I~~~  656 (844)
                             .||+|+..
T Consensus       264 -------~GT~I~~~  271 (327)
T TIGR02078       264 -------MGTLISNR  271 (327)
T ss_pred             -------CCcEEecC
Confidence                   59999864

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.

>PRK09084 aspartate kinase III; Validated

Probab=99.83  E-value=1.2e-19  Score=207.70  Aligned_cols=156  Identities=22%  Similarity=0.279  Sum_probs=127.1

Q ss_pred             HHHHHHHHHH--HHHHHHHHHHHcCCceeEeehhchhh----h---------hhccchHHHHHHHhCCCEEEEeCCCCCC
Q psy3759         491 DYMGMLATII--NSLALFDILNKSGIISHVMSAISIEK----F---------LESYIPLNAIKYLEEGKVVIFAGGIGNP  555 (844)
Q Consensus       491 ~~~~~~~~~~--~~~ll~~~L~~~gi~a~~l~~~~~~~----~---------~~~~~~~~l~~lL~~g~VPVv~G~~G~~  555 (844)
                      ....+++.|+  ++.+++.+|++.|+++..+++.++-.    +         ........+..+++.+ |||++||.|..
T Consensus       108 ~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~  186 (448)
T PRK09084        108 LTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRFGRAEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSD  186 (448)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCCCcccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecC
Confidence            3455555554  78899999999999999998866510    0         0001113445556778 99999987742


Q ss_pred             --C-C------cchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHH
Q psy3759         556 --F-F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCR  623 (844)
Q Consensus       556 --~-~------s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~  623 (844)
                        + .      .+|++|+++|..++||.+++|||||||||+||+.+|+|+++++++++|+.+   .|+.+.++.+..+|.
T Consensus       187 ~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~  266 (448)
T PRK09084        187 EKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAV  266 (448)
T ss_pred             CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHH
Confidence              1 1      289999999999999999999999999999999999999999999999987   799999999999999


Q ss_pred             hCCCCEEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759         624 DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       624 ~~gi~v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  656 (844)
                      ++++|++|.|+.+|+         ..||+|.+.
T Consensus       267 ~~~i~i~i~~~~~~~---------~~GT~I~~~  290 (448)
T PRK09084        267 RSNIPVFVGSSKDPE---------AGGTWICND  290 (448)
T ss_pred             HcCCcEEEEeCCCCC---------CCceEEecC
Confidence            999999999998874         469999754

>PRK05279 N-acetylglutamate synthase; Validated

Probab=99.82  E-value=6.2e-20  Score=210.98  Aligned_cols=217  Identities=18%  Similarity=0.164  Sum_probs=164.1

Q ss_pred             hHHHHHHHhhhhhhhcCCCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhcccc---cc----C---CCcchHH
Q psy3759         422 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQ----N---IDRSTAD  491 (844)
Q Consensus       422 ~~iv~k~~~~~~~l~~g~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~~----~---~~~~~~~  491 (844)
                      +++|+|+  +|+++.       + +.++.++.+|+.|...|.++|||||||.....+...   ..    +   .++.+++
T Consensus        26 ~~~VIk~--GG~~l~-------~-~~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~   95 (441)
T PRK05279         26 KTFVIML--GGEAIA-------H-GNFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKGLRVTDAAALE   95 (441)
T ss_pred             CEEEEEE--Cchhcc-------C-hhHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCCcccCCHHHHH
Confidence            4677776  454432       1 135789999999999999999999999444332221   11    1   2566677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCceeEeehhch-----h------------------hhhhccchHHHHHHHhCCCEEEE
Q psy3759         492 YMGMLATIINSLALFDILNKSGIISHVMSAISI-----E------------------KFLESYIPLNAIKYLEEGKVVIF  548 (844)
Q Consensus       492 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~-----~------------------~~~~~~~~~~l~~lL~~g~VPVv  548 (844)
                      ...++ .+..+..+.+.|+. |++++++++.++     .                  ..+..++.+.+..++++|+|||+
T Consensus        96 ~~~~~-~g~v~~~l~~~l~~-g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~ipV~  173 (441)
T PRK05279         96 CVKQA-AGELRLDIEARLSM-GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAIVLL  173 (441)
T ss_pred             HHHHH-HHHHHHHHHHHHhc-cCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCeEEE
Confidence            77777 46788888888855 888766543221     0                  01345678999999999999999


Q ss_pred             eCC----CCC-CCCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh----------hcccc
Q psy3759         549 AGG----IGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLEI  613 (844)
Q Consensus       549 ~G~----~G~-~~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~----------~G~~v  613 (844)
                      ++.    .|. -++++|++|+.||..|+||+|+|+|||||||++      ++++|++++.+++.+          +|||.
T Consensus       174 ~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~  247 (441)
T PRK05279        174 SPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTA  247 (441)
T ss_pred             CCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHH
Confidence            872    122 246899999999999999999999999999953      356888888766533          49999


Q ss_pred             chHHHHHHHHhCCC-CEEEEecCCcchHHHHHcCC-cccEEEEec
Q psy3759         614 MDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGK-NEGTLVYEI  656 (844)
Q Consensus       614 ~~~~Aa~~a~~~gi-~v~I~~g~~~~~i~~~l~Ge-~~GT~I~~~  656 (844)
                      +|+.++..+.+.|+ +++|++|..|+++...|.++ ..||.|+++
T Consensus       248 ~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~  292 (441)
T PRK05279        248 RFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME  292 (441)
T ss_pred             HHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence            99999988888899 69999999999999988765 479999987

>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP)

Probab=99.81  E-value=3.3e-19  Score=189.02  Aligned_cols=196  Identities=15%  Similarity=0.162  Sum_probs=148.5

Q ss_pred             hhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc---c----C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy3759         448 IKNIISEISEIVSCGIELAIVIGGGNICRGISNKI---Q----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH  517 (844)
Q Consensus       448 i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~---~----~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~  517 (844)
                      +.+++++|+.|...|.++|||||||.+........   .    +   .++..++...++.. ..+..+.+.|.++|++++
T Consensus        14 l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~-~vn~~iv~~l~~~g~~a~   92 (248)
T cd04252          14 LDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFL-EENLKLVEALERNGARAR   92 (248)
T ss_pred             HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHH-HHHHHHHHHHHhCCCCcc
Confidence            68899999999988999999999996665544332   1    1   25566677766654 677788888999999999


Q ss_pred             Eeehhchh------------hhhhccchHHHHHHHhCCCEEEEeCC----CCC-CCCcchHHHHHHHHHcCCcEEEEeec
Q psy3759         518 VMSAISIE------------KFLESYIPLNAIKYLEEGKVVIFAGG----IGN-PFFTTDTTAALRAAEIKAEIILKATK  580 (844)
Q Consensus       518 ~l~~~~~~------------~~~~~~~~~~l~~lL~~g~VPVv~G~----~G~-~~~s~D~lAa~lA~~l~Ad~LiilTD  580 (844)
                      ++++..+.            ..+..++.+.+..+|+.|+|||++|.    .|. -++++|.+|+.+|..|+|++|+|+||
T Consensus        93 ~l~~~~~~a~~~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltd  172 (248)
T cd04252          93 PITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNE  172 (248)
T ss_pred             cccCceEEEEECcCccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEEC
Confidence            88764221            11456789999999999999999981    221 25779999999999999999999999


Q ss_pred             ccccccCCCCCCCCceeecccCHH-HH---Hh----hccccchHHHHHHHHhC--C-CCEEEEecCCcchHHHHHcCC-c
Q psy3759         581 VDGIYNSDPNKCLSAIIYKKITFD-EV---IS----KKLEIMDSTAFSFCRDQ--K-LPIRVFSIIKSGALKRVIEGK-N  648 (844)
Q Consensus       581 VdGVyt~dP~~~~~a~~I~~i~~~-e~---~~----~G~~v~~~~Aa~~a~~~--g-i~v~I~~g~~~~~i~~~l~Ge-~  648 (844)
                      |||||+++      .++|++++.. +.   .+    +|||..|+.++..+.+.  + ..++|++   ++.+...|.+. .
T Consensus       173 v~GV~~~~------g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g  243 (248)
T cd04252         173 TGGLLDGT------GKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSG  243 (248)
T ss_pred             CcccCCCC------CCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCC
Confidence            99999752      4578888753 33   22    69999999988888776  3 3577765   56777666554 5


Q ss_pred             ccEEE
Q psy3759         649 EGTLV  653 (844)
Q Consensus       649 ~GT~I  653 (844)
                      .||.|
T Consensus       244 ~GT~i  248 (248)
T cd04252         244 AGTLI  248 (248)
T ss_pred             CCccC
Confidence            89975

The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th

>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase

Probab=99.81  E-value=6.1e-19  Score=201.83  Aligned_cols=202  Identities=18%  Similarity=0.179  Sum_probs=155.1

Q ss_pred             hhhhhhhhhhhhhCCCeEEEEeCchHHhhhccc---ccc-------CCCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy3759         448 IKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ-------NIDRSTADYMGMLATIINSLALFDILNKSGIISH  517 (844)
Q Consensus       448 i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~  517 (844)
                      +..++++|+.|...|.++|||||||.....+..   ...       -.++.+++...++ ++..+..|++.|+.. +++.
T Consensus        34 ~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~~~~~~-~g~vn~~l~~~l~~~-~~~~  111 (429)
T TIGR01890        34 LGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRVTDEASLEQAQQA-AGTLRLAIEARLSMS-LSNT  111 (429)
T ss_pred             HHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHHHHH-hChHHHHHHHHHHhc-CCcc
Confidence            357999999999999999999999944433222   211       2377788888876 778888899998876 4433


Q ss_pred             E-----eehhchh----------------h--hhhccchHHHHHHHhCCCEEEEeC-CC---CC-CCCcchHHHHHHHHH
Q psy3759         518 V-----MSAISIE----------------K--FLESYIPLNAIKYLEEGKVVIFAG-GI---GN-PFFTTDTTAALRAAE  569 (844)
Q Consensus       518 ~-----l~~~~~~----------------~--~~~~~~~~~l~~lL~~g~VPVv~G-~~---G~-~~~s~D~lAa~lA~~  569 (844)
                      +     +++.+.+                .  .+..++.+.+..+++.|+|||+++ +.   |. -++++|++|+.||.+
T Consensus       112 ~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~a  191 (429)
T TIGR01890       112 PMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAIS  191 (429)
T ss_pred             cccccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHH
Confidence            2     3332321                1  145578999999999999999997 22   21 257799999999999


Q ss_pred             cCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh-----hcc-ccchHHHHHHHHhCCC-CEEEEecCCcchHHH
Q psy3759         570 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKL-EIMDSTAFSFCRDQKL-PIRVFSIIKSGALKR  642 (844)
Q Consensus       570 l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~-----~G~-~v~~~~Aa~~a~~~gi-~v~I~~g~~~~~i~~  642 (844)
                      |+|++|+++|||||||+++      .++|++++.+++.+     .|+ |..++.++..|.+.|+ +++|++|..|+.+..
T Consensus       192 l~a~kli~ltdv~Gv~~~~------g~~i~~i~~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~  265 (429)
T TIGR01890       192 LKADKLIYFTLSPGISDPD------GTLAAELSPQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQ  265 (429)
T ss_pred             cCCCEEEEEeCCCcccCCC------CCCcccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHH
Confidence            9999999999999999642      46888998766654     245 5999999999999996 689999999999888


Q ss_pred             HHc-CCcccEEEEecc
Q psy3759         643 VIE-GKNEGTLVYEIY  657 (844)
Q Consensus       643 ~l~-Ge~~GT~I~~~~  657 (844)
                      .|. .+..||.|+++.
T Consensus       266 el~~~~g~GT~i~~d~  281 (429)
T TIGR01890       266 ELFTRDGIGTSISKEA  281 (429)
T ss_pred             HHhcCCCCcceEeccc
Confidence            775 556899999874

This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.

>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals

Probab=99.80  E-value=4.6e-19  Score=188.04  Aligned_cols=195  Identities=11%  Similarity=0.076  Sum_probs=150.1

Q ss_pred             ccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehh
Q psy3759         443 INSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAI  522 (844)
Q Consensus       443 id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~  522 (844)
                      .+++.++.+++.|+.|...|.++|||||||........ .     .......++.. ..+..|+..|+.+|++++++++.
T Consensus        48 ~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~-~-----~~~~~~~~v~~-~~n~~Lv~~L~~~G~~A~gl~g~  120 (271)
T cd04236          48 RSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS-D-----LELQAARSRLV-KDCKTLVEALQANSAAAHPLFSG  120 (271)
T ss_pred             cCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc-C-----CcchheehhHH-HHHHHHHHHHHhCCCCeeeecCc
Confidence            35678899999999999999999999999965443332 1     12222233333 56778889999999999999876


Q ss_pred             ch------------hhhhhccchHHHHHHHhCCCEEEEeCC----CCC-CCCcchHHHHHHHHHcCCcEEEEeecccccc
Q psy3759         523 SI------------EKFLESYIPLNAIKYLEEGKVVIFAGG----IGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIY  585 (844)
Q Consensus       523 ~~------------~~~~~~~~~~~l~~lL~~g~VPVv~G~----~G~-~~~s~D~lAa~lA~~l~Ad~LiilTDVdGVy  585 (844)
                      ..            ...+..++.+.+..+|+.|+|||++|.    .|. -++++|.+|+.+|.+|+|++|+++|||+|||
T Consensus       121 ~~~i~a~~~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~  200 (271)
T cd04236         121 ESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLR  200 (271)
T ss_pred             cceEEEEEcccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceE
Confidence            21            011456789999999999999999981    122 2477999999999999999999999999999


Q ss_pred             cCCCCCCCCceeecccCH-HHHHh-------hccc---cchHHHHHHHHhCCCCEEEEecCCcchH-HHHHcCCcccEEE
Q psy3759         586 NSDPNKCLSAIIYKKITF-DEVIS-------KKLE---IMDSTAFSFCRDQKLPIRVFSIIKSGAL-KRVIEGKNEGTLV  653 (844)
Q Consensus       586 t~dP~~~~~a~~I~~i~~-~e~~~-------~G~~---v~~~~Aa~~a~~~gi~v~I~~g~~~~~i-~~~l~Ge~~GT~I  653 (844)
                      +++      .++|++++. +|..+       .|||   ++++.++.-+...|++|+|++   |+.+ .+++..++.||+|
T Consensus       201 ~~~------g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~---~~~ll~elft~~g~GT~~  271 (271)
T cd04236         201 DQK------HKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS---AETLLTELFSHKGSGTLF  271 (271)
T ss_pred             CCC------CCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC---hHHHHHHHhccCCCCCcC
Confidence            743      457888884 66543       7899   889999999999999999987   4444 4556667789986

Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=99.80  E-value=8.1e-18  Score=205.12  Aligned_cols=154  Identities=16%  Similarity=0.223  Sum_probs=126.1

Q ss_pred             HHHHHH--HHHHHHHHHHHHcCCceeEeehhchhh----h-----hhccchHHHHHHH-hCCCEEEEeCCCCCCC---Cc
Q psy3759         494 GMLATI--INSLALFDILNKSGIISHVMSAISIEK----F-----LESYIPLNAIKYL-EEGKVVIFAGGIGNPF---FT  558 (844)
Q Consensus       494 ~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~----~-----~~~~~~~~l~~lL-~~g~VPVv~G~~G~~~---~s  558 (844)
                      .+++.|  .++.+|+.+|++.|+++..+++.++-.    .     ........+.+++ +.+.|||++||.|...   .+
T Consensus       121 ~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G~~t  200 (819)
T PRK09436        121 AIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKGELV  200 (819)
T ss_pred             heeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCCCCCCEE
Confidence            334444  478889999999999999998866410    0     0112234555554 4689999999877321   11


Q ss_pred             ------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCE
Q psy3759         559 ------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPI  629 (844)
Q Consensus       559 ------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v  629 (844)
                            +|++|+++|..++||.+++|||||||||+||+.+|+|++|++++++|+.+   .|.+++|+.|+.+|.++|+|+
T Consensus       201 tlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi  280 (819)
T PRK09436        201 TLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPC  280 (819)
T ss_pred             EeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCceE
Confidence                  89999999999999999999999999999999999999999999999987   799999999999999999999


Q ss_pred             EEEecCCcchHHHHHcCCcccEEEEec
Q psy3759         630 RVFSIIKSGALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       630 ~I~~g~~~~~i~~~l~Ge~~GT~I~~~  656 (844)
                      +|.|+++|+         ..||+|++.
T Consensus       281 ~i~n~~~p~---------~~GT~I~~~  298 (819)
T PRK09436        281 LIKNTFNPQ---------APGTLIGAE  298 (819)
T ss_pred             EEccCCCCC---------CCceEEEec
Confidence            999999874         469999764

>PRK05925 aspartate kinase; Provisional

Probab=99.80  E-value=7.2e-19  Score=199.64  Aligned_cols=155  Identities=22%  Similarity=0.204  Sum_probs=124.8

Q ss_pred             HHHHHHHH--HHHHHHHHHHHcCCceeEeehhchhhhh-----hccc----hHHHHH-HHhCCCEEEEeCCCCCC--C-C
Q psy3759         493 MGMLATII--NSLALFDILNKSGIISHVMSAISIEKFL-----ESYI----PLNAIK-YLEEGKVVIFAGGIGNP--F-F  557 (844)
Q Consensus       493 ~~~~~~~~--~~~ll~~~L~~~gi~a~~l~~~~~~~~~-----~~~~----~~~l~~-lL~~g~VPVv~G~~G~~--~-~  557 (844)
                      ..+++.|+  ++.+++.+|+..|+++..+++.++-...     ..++    .+.+.. .+..+.|||++||.|..  + .
T Consensus       103 d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~  182 (440)
T PRK05925        103 ARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPDLALMQTAWHELALQEDAIYIMQGFIGANSSGKT  182 (440)
T ss_pred             hhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccCHHHHHHHHHHhhccCCcEEEecCcceeCCCCCE
Confidence            44444554  7889999999999999999887651100     0111    112222 34567899999988743  1 1


Q ss_pred             c------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCC
Q psy3759         558 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP  628 (844)
Q Consensus       558 s------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~  628 (844)
                      +      ||++|+++|.+++||.+++|||||||||+||+.+|+|++|++++++|+.+   .|..+.++.++++|.++|+|
T Consensus       183 ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~Ip  262 (440)
T PRK05925        183 TVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIP  262 (440)
T ss_pred             EEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHHCCCc
Confidence            1      99999999999999999999999999999999999999999999999877   68999999999999999999


Q ss_pred             EEEEecCCcchHHHHHcCCcccEEEEec
Q psy3759         629 IRVFSIIKSGALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       629 v~I~~g~~~~~i~~~l~Ge~~GT~I~~~  656 (844)
                      ++|.|+++|+         ..||+|.+.
T Consensus       263 i~I~~~~~p~---------~~GT~i~~~  281 (440)
T PRK05925        263 IFVTSTFDVT---------KGGTWIYAS  281 (440)
T ss_pred             EEEecCCCCC---------CCccEEecC
Confidence            9999999985         469999864

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=99.79  E-value=9.3e-19  Score=211.65  Aligned_cols=154  Identities=17%  Similarity=0.191  Sum_probs=128.1

Q ss_pred             HHHHHHHH--HHHHHHHHHHHcCCceeEeehhchhh--------hhhccchHHHHHHHhC--CCEEEEeCCCCCC--C-C
Q psy3759         493 MGMLATII--NSLALFDILNKSGIISHVMSAISIEK--------FLESYIPLNAIKYLEE--GKVVIFAGGIGNP--F-F  557 (844)
Q Consensus       493 ~~~~~~~~--~~~ll~~~L~~~gi~a~~l~~~~~~~--------~~~~~~~~~l~~lL~~--g~VPVv~G~~G~~--~-~  557 (844)
                      ..+++.|+  ++.+|+.+|+..|+++..+++.++-.        +........+...+..  +.|||++||+|..  + .
T Consensus       123 d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~~~~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~  202 (810)
T PRK09466        123 AEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGET  202 (810)
T ss_pred             hheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHheecCCCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCE
Confidence            44445554  78889999999999999999876511        1112234567776654  3899999998743  1 2


Q ss_pred             c------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCC
Q psy3759         558 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP  628 (844)
Q Consensus       558 s------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~  628 (844)
                      +      +|++|+.+|.+|+|+.+.||||||||||+||+..|+|++|++++++|+.+   +|.+++||.+.++|.+++||
T Consensus       203 ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~Ip  282 (810)
T PRK09466        203 VLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDID  282 (810)
T ss_pred             EEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCCe
Confidence            2      89999999999999999999999999999999999999999999999988   89999999999999999999


Q ss_pred             EEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759         629 IRVFSIIKSGALKRVIEGKNEGTLVYE  655 (844)
Q Consensus       629 v~I~~g~~~~~i~~~l~Ge~~GT~I~~  655 (844)
                      ++|.|.++|+         ..||+|+.
T Consensus       283 i~V~ntf~p~---------~~GT~I~~  300 (810)
T PRK09466        283 LQLRCSYQPE---------QGSTRIER  300 (810)
T ss_pred             EEEecCCCCC---------CCceEEec
Confidence            9999998874         56999976

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=99.76  E-value=4.4e-18  Score=209.66  Aligned_cols=148  Identities=20%  Similarity=0.258  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHcCCceeEeehhchhhhh-----------------hccchHHHHHHHhCC-CEEEEeCCCCCC--C-Cc
Q psy3759         500 INSLALFDILNKSGIISHVMSAISIEKFL-----------------ESYIPLNAIKYLEEG-KVVIFAGGIGNP--F-FT  558 (844)
Q Consensus       500 ~~~~ll~~~L~~~gi~a~~l~~~~~~~~~-----------------~~~~~~~l~~lL~~g-~VPVv~G~~G~~--~-~s  558 (844)
                      .++.+|+.+|++.|+++..+++.++....                 .......+..++..+ .|||++||.|..  + ++
T Consensus       129 lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~t  208 (861)
T PRK08961        129 LSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARNADGGTA  208 (861)
T ss_pred             HHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeCCCCCEE
Confidence            47888999999999999999887651110                 001233444555555 599999988743  2 11


Q ss_pred             ------chHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCE
Q psy3759         559 ------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPI  629 (844)
Q Consensus       559 ------~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v  629 (844)
                            +|++|+.+|.+|+||.++++||||||||+||+.+|+|++|++++++|+.+   .|++++|+.|+++|+++|||+
T Consensus       209 tLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i  288 (861)
T PRK08961        209 LLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPM  288 (861)
T ss_pred             EEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCE
Confidence                  99999999999999999999999999999999999999999999999876   799999999999999999999


Q ss_pred             EEEecCCcchHHHHHcCCcccEEEEec
Q psy3759         630 RVFSIIKSGALKRVIEGKNEGTLVYEI  656 (844)
Q Consensus       630 ~I~~g~~~~~i~~~l~Ge~~GT~I~~~  656 (844)
                      +|.|+++|+         ..||+|.++
T Consensus       289 ~v~~~~~~~---------~~gT~I~~~  306 (861)
T PRK08961        289 AILDTERPD---------LSGTSIDGD  306 (861)
T ss_pred             EEEeCCCCC---------CCccEEeCC
Confidence            999998873         468999754

>PRK09181 aspartate kinase; Validated

Probab=99.75  E-value=7.7e-17  Score=184.60  Aligned_cols=160  Identities=12%  Similarity=0.124  Sum_probs=126.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHh----CCCEEEEeCCCCCCC--Cc-
Q psy3759         486 DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLE----EGKVVIFAGGIGNPF--FT-  558 (844)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~----~g~VPVv~G~~G~~~--~s-  558 (844)
                      ++...|.........++.+|+.+|+..|+++..++......-........+...+.    .+.|||++||.|.+.  ++ 
T Consensus       135 ~~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itT  214 (475)
T PRK09181        135 LLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDDDDPLTLDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRT  214 (475)
T ss_pred             ChhHhHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccCCcccchHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEe
Confidence            34444444444444578899999999999999855432211001112456666655    478999999876442  22 


Q ss_pred             -----chHHHHHHHHHcCCcEEEEeecccccccCCCCCC--CCceeecccCHHHHHh---hccccchHHHHHHHHhCCCC
Q psy3759         559 -----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC--LSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP  628 (844)
Q Consensus       559 -----~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~--~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~  628 (844)
                           +|++|+.+|.+|+||.+.|||||+ ||++||+..  |+|++|++++|+|+.+   +|.++++|.|.++|.+++||
T Consensus       215 LGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ip  293 (475)
T PRK09181        215 FDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIP  293 (475)
T ss_pred             cCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCe
Confidence                 999999999999999999999997 999999999  6999999999999988   89999999999999999999


Q ss_pred             EEEEecCCcchHHHHHcCCcccEEEEe
Q psy3759         629 IRVFSIIKSGALKRVIEGKNEGTLVYE  655 (844)
Q Consensus       629 v~I~~g~~~~~i~~~l~Ge~~GT~I~~  655 (844)
                      ++|.|.++|+         ..||+|++
T Consensus       294 i~V~nt~~p~---------~~GT~I~~  311 (475)
T PRK09181        294 LRIKNTFEPE---------HPGTLITK  311 (475)
T ss_pred             EEEecCCCCC---------CCCeEEec
Confidence            9999998874         57999975

>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria

Probab=99.71  E-value=9.3e-17  Score=171.10  Aligned_cols=159  Identities=13%  Similarity=0.122  Sum_probs=124.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHh----CCCEEEEeCCCCCCC--Cc-
Q psy3759         486 DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLE----EGKVVIFAGGIGNPF--FT-  558 (844)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~lL~----~g~VPVv~G~~G~~~--~s-  558 (844)
                      .+...|.........++.+++.+|+..|+++..++...............+.+.+.    .+.|||++||.++..  .+ 
T Consensus       129 ~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itT  208 (304)
T cd04248         129 LLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSGDMTLDERISEAFRDIDPRDELPIVTGYAKCAEGLMRE  208 (304)
T ss_pred             CHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccccCCCCcHHHHHHHHHhhccCCcEEEeCCccCCCCCCEEE
Confidence            34555555555555578899999999999998744432211000112344444443    578999999865432  11 


Q ss_pred             -----chHHHHHHHHHcCCcEEEEeecccccccCCCCCC--CCceeecccCHHHHHh---hccccchHHHHHHHHhCCCC
Q psy3759         559 -----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC--LSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP  628 (844)
Q Consensus       559 -----~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~--~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~  628 (844)
                           +|++|+.+|.+++|+.+.|||||+ ||++||+.+  |+|+.|++++++|+.+   .|+++.+|.|+++|.+++||
T Consensus       209 LGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IP  287 (304)
T cd04248         209 FDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIP  287 (304)
T ss_pred             cCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCe
Confidence                 999999999999999999999996 999999999  6899999999999988   89999999999999999999


Q ss_pred             EEEEecCCcchHHHHHcCCcccEEEE
Q psy3759         629 IRVFSIIKSGALKRVIEGKNEGTLVY  654 (844)
Q Consensus       629 v~I~~g~~~~~i~~~l~Ge~~GT~I~  654 (844)
                      ++|.|.++|+         ..||+|+
T Consensus       288 i~Vkntf~P~---------~~GTlIt  304 (304)
T cd04248         288 LRVKNTFEPD---------HPGTLIT  304 (304)
T ss_pred             EEEecCCCCC---------CCCceeC
Confidence            9999999874         5799984

Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.

>PRK04531 acetylglutamate kinase; Provisional

Probab=99.66  E-value=1.7e-15  Score=169.72  Aligned_cols=176  Identities=16%  Similarity=0.146  Sum_probs=130.9

Q ss_pred             hhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccc---c----C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy3759         448 IKNIISEISEIVSCGIELAIVIGGGNICRGISNKI---Q----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH  517 (844)
Q Consensus       448 i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~---~----~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~  517 (844)
                      ++.++++|+.|...|.++|||||||..........   .    +   .++.+++.+.++.. ..+..|+..         
T Consensus        52 ~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l~-~vn~~lv~~---------  121 (398)
T PRK04531         52 LEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVNGLRVTSPEALAIVRKVFQ-RSNLDLVEA---------  121 (398)
T ss_pred             HHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEECCEecCCHHHHHHHHHHHH-HHHHHHHHH---------
Confidence            47899999999999999999999995544332221   1    1   36666666666554 333333322         


Q ss_pred             EeehhchhhhhhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCC
Q psy3759         518 VMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC  592 (844)
Q Consensus       518 ~l~~~~~~~~~~~~~~~~l~~lL~~g~VPVv~G~----~G~~-~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~  592 (844)
                                        +..+|+.|.|||+++.    .|.. ++++|.+|+.+|.+|+|++|+++|||+|||+.+    
T Consensus       122 ------------------I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~----  179 (398)
T PRK04531        122 ------------------VESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDAD----  179 (398)
T ss_pred             ------------------HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCC----
Confidence                              6778999999999872    1222 467999999999999999999999999999754    


Q ss_pred             CCceeecccCH-HHHHh-------hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCC-cccEEEEecc
Q psy3759         593 LSAIIYKKITF-DEVIS-------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK-NEGTLVYEIY  657 (844)
Q Consensus       593 ~~a~~I~~i~~-~e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge-~~GT~I~~~~  657 (844)
                        .++|++++. ++...       +|||..|+.++..|.+...+++++++..|+++...|.++ ..||.|...+
T Consensus       180 --g~~i~~i~~~~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~  251 (398)
T PRK04531        180 --GKLISSINLSTEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSDLAKELFTHKGSGTLVRRGE  251 (398)
T ss_pred             --CCCcccCCHHHHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCHHHHHHccCCCCCeEEecCC
Confidence              457778875 33322       689999999988887654567788888899998887765 4799999763

>PLN02825 amino-acid N-acetyltransferase

Probab=99.63  E-value=5.4e-15  Score=169.72  Aligned_cols=202  Identities=17%  Similarity=0.122  Sum_probs=147.7

Q ss_pred             hhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccc---ccc----C---CCcchHHHHHHHHHHHHHHHHHHH--------
Q psy3759         447 IIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ----N---IDRSTADYMGMLATIINSLALFDI--------  508 (844)
Q Consensus       447 ~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~----~---~~~~~~~~~~~~~~~~~~~ll~~~--------  508 (844)
                      .+..++.+|+.|...|.++|||||||........   ...    +   .++.+++.. +.+.+..+..+.+.        
T Consensus        33 ~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RVTd~~~L~~~-~~~~G~v~~~i~a~Ls~~~~v~  111 (515)
T PLN02825         33 HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRITDSAALQAS-MEAAGKIRVMIEAKLSPGPSIP  111 (515)
T ss_pred             hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHH-HHHHHHHHHHHHHhhccccchh
Confidence            5788999999999999999999999944333222   211    1   266777774 66777777777765        


Q ss_pred             -HHHcCCce----eEeehhchhh------------------hhhccchHHHHHHHhCCCEEEEeC----CCCCC-CCcch
Q psy3759         509 -LNKSGIIS----HVMSAISIEK------------------FLESYIPLNAIKYLEEGKVVIFAG----GIGNP-FFTTD  560 (844)
Q Consensus       509 -L~~~gi~a----~~l~~~~~~~------------------~~~~~~~~~l~~lL~~g~VPVv~G----~~G~~-~~s~D  560 (844)
                       |+.+|+++    +.+++.+.+.                  .++.++.+.+..+|+.|.|||+++    ..|.. |+++|
T Consensus       112 ~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD  191 (515)
T PLN02825        112 NLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTY  191 (515)
T ss_pred             HHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHHHHhCCCeEEECCceECCCCCEEeeCHH
Confidence             48888887    6666554311                  156789999999999999999998    22322 57799


Q ss_pred             HHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHh---hc---------c--------------c--
Q psy3759         561 TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KK---------L--------------E--  612 (844)
Q Consensus       561 ~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G---------~--------------~--  612 (844)
                      .+|+.+|.+|+||+||++|||+ +++.+      .++|++++.+|+.+   .+         .              .  
T Consensus       192 ~vA~avA~aL~A~KLI~ltd~~-~~~~~------g~li~~l~~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (515)
T PLN02825        192 EVATACALAIGADKLICIVDGP-ILDEN------GRLIRFMTLEEADMLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDS  264 (515)
T ss_pred             HHHHHHHHHcCCCeEEEEeCcc-eecCC------CCCcCcCCHHHHHHHHHhhhhcchhhhhhhhhcccccccccccccc
Confidence            9999999999999999999977 55433      34677777665543   11         0              0  


Q ss_pred             ------------------------------c-------------------------chHHHHHHHHhCCCC-EEEEecCC
Q psy3759         613 ------------------------------I-------------------------MDSTAFSFCRDQKLP-IRVFSIIK  636 (844)
Q Consensus       613 ------------------------------v-------------------------~~~~Aa~~a~~~gi~-v~I~~g~~  636 (844)
                                                    .                         .++.+|..|.+.|++ ++++++..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~  344 (515)
T PLN02825        265 VNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEERLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTI  344 (515)
T ss_pred             ccccccccccccccccccccccccccccccCcccccccccccccchhhchhhhhHHHHHHHHHHHHHcCCCeEEeccCCC
Confidence                                          0                         015677788889996 99999999


Q ss_pred             cchHHHHHc-CCcccEEEEec
Q psy3759         637 SGALKRVIE-GKNEGTLVYEI  656 (844)
Q Consensus       637 ~~~i~~~l~-Ge~~GT~I~~~  656 (844)
                      ++.|..-|. -+++||.|+.+
T Consensus       345 ~gall~elft~dg~gt~i~~~  365 (515)
T PLN02825        345 EGVLLLELFTRDGMGTMIASD  365 (515)
T ss_pred             CchHHHHhhccCCceeEeccC
Confidence            998875544 56789999987

>KOG0456|consensus

Probab=99.62  E-value=1.4e-15  Score=160.91  Aligned_cols=237  Identities=18%  Similarity=0.263  Sum_probs=175.2

Q ss_pred             CCCcccchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy3759         439 DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHV  518 (844)
Q Consensus       439 ~~~~id~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~  518 (844)
                      .....++..+..+.+.+.++...                 ......++.++.|+...+...+..+.++++|+..|..+..
T Consensus       158 ~e~~~d~~v~~~~le~leq~Lk~-----------------i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~  220 (559)
T KOG0456|consen  158 HELIVDPAVIAKLLEGLEQLLKG-----------------IAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQ  220 (559)
T ss_pred             HHhccCHHHHHHHHHHHHHHHHH-----------------HHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCcccee
Confidence            44566777777777777766431                 1122345678888888888888999999999999999988


Q ss_pred             eehhchhhh----------hhccchHHHHHH----HhCCCEEEEeCCCCCCC----Cc------chHHHHHHHHHcCCcE
Q psy3759         519 MSAISIEKF----------LESYIPLNAIKY----LEEGKVVIFAGGIGNPF----FT------TDTTAALRAAEIKAEI  574 (844)
Q Consensus       519 l~~~~~~~~----------~~~~~~~~l~~l----L~~g~VPVv~G~~G~~~----~s------~D~lAa~lA~~l~Ad~  574 (844)
                      +....+...          ...+-+.....+    ...+.|||++||.|...    ++      +|.+|+.+|.+|++|.
T Consensus       221 ~D~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~E  300 (559)
T KOG0456|consen  221 YDAFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDE  300 (559)
T ss_pred             echhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchh
Confidence            776654322          111112222222    23579999999877321    22      8999999999999999


Q ss_pred             EEEeecccccccCCCCCCCCceeecccCHHHHHh---hccccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCcccE
Q psy3759         575 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT  651 (844)
Q Consensus       575 LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~~GT  651 (844)
                      +-+|.|||||+|+||++.|.|++++.++++|+.+   +|+.+.+|...+.+.+..||+.|-|..+|-         ..||
T Consensus       301 iQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~---------~~GT  371 (559)
T KOG0456|consen  301 IQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPT---------APGT  371 (559)
T ss_pred             hhhhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCC---------CCce
Confidence            9999999999999999999999999999999988   899999999999999999999999998883         5799


Q ss_pred             EEEecchhh--------h-h--hhhhhHHHhHHHHHHHHHHHHHhhhcCCCcccccceeEE
Q psy3759         652 LVYEIYIMI--------I-S--DIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQV  701 (844)
Q Consensus       652 ~I~~~~~m~--------~-~--~i~~~~~~~m~~~v~~~~~~l~~irtgr~~p~~ld~i~V  701 (844)
                      .|+|+.+|-        + +  .+++-...+|-...-.|..-|.-+-.-..+.+++..-.|
T Consensus       372 vI~~d~~m~k~~~TsI~lK~nv~mldI~Str~l~q~GFLAkvFti~ek~~isVDvvaTSEV  432 (559)
T KOG0456|consen  372 VITPDRDMSKAGLTSIVLKRNVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDVVATSEV  432 (559)
T ss_pred             EeccchhhhhccceEEEEeccEEEEEecccchhhhhhHHHHHHHHHHHhCcEEEEEEeeeE
Confidence            999984432        0 1  123444566777777766666655555556566554433

>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]

Probab=99.59  E-value=2e-14  Score=138.33  Aligned_cols=173  Identities=21%  Similarity=0.217  Sum_probs=134.2

Q ss_pred             CCeEEEEeCchHHhhh--ccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHH
Q psy3759         462 GIELAIVIGGGNICRG--ISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKY  539 (844)
Q Consensus       462 G~~vVIVhGGG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~l~~l  539 (844)
                      +.++++|.|||.++.-  ......+++....+|+.+.++.+.+.++++.........+. .+               +..
T Consensus        26 ~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~lad~~~~~~~~tv~-ep---------------~~~   89 (212)
T COG2054          26 QRSILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFYLADLASRFVTDTVT-EP---------------EDG   89 (212)
T ss_pred             cceEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhhhcccccceee-ch---------------hhc
Confidence            3479999999955442  34445578899999999999999999998876554422211 11               112


Q ss_pred             HhCCCEEEEeCC------CCCC---CCcchHHHHHHHHHcCCcEEEEeecccccccCCCCCCCCceeecccCHHHHHhhc
Q psy3759         540 LEEGKVVIFAGG------IGNP---FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK  610 (844)
Q Consensus       540 L~~g~VPVv~G~------~G~~---~~s~D~lAa~lA~~l~Ad~LiilTDVdGVyt~dP~~~~~a~~I~~i~~~e~~~~G  610 (844)
                      ...+..||+-+.      .--|   .+|+|++|+++|.+++|..+++.|||||||+.+|+    ++++++|+..++.. |
T Consensus        90 i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~-~  164 (212)
T COG2054          90 IKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT-G  164 (212)
T ss_pred             cCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc-C
Confidence            334455555431      0011   36799999999999999999999999999999875    48999999998865 7


Q ss_pred             cccchHHHHHHHHhCCCCEEEEecCCcchHHHHHcCCc-ccEEEEe
Q psy3759         611 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKN-EGTLVYE  655 (844)
Q Consensus       611 ~~v~~~~Aa~~a~~~gi~v~I~~g~~~~~i~~~l~Ge~-~GT~I~~  655 (844)
                      --..|+..-.++.++++.++++||..|+++.+++.|++ +||+|.+
T Consensus       165 ~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg  210 (212)
T COG2054         165 ETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVG  210 (212)
T ss_pred             cccccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceEEEeC
Confidence            78889999999999999999999999999999999975 6999986

>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=6.2e-14  Score=146.24  Aligned_cols=157  Identities=24%  Similarity=0.263  Sum_probs=118.2

Q ss_pred             EEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHH-h
Q psy3759         184 GVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK-L  262 (844)
Q Consensus       184 ~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~k-g  262 (844)
                      +++--||.+++|     +.|+.  +..|. +-++.++++...         ..+.+-+.+-...+-.++.++..+..+ |
T Consensus        74 v~vEvN~ETDFV-----AkN~~--F~~l~-~~ia~~~l~~~~---------~~ve~l~~~~~~~~~tv~e~~~~~~AkIG  136 (296)
T COG0264          74 VLVEVNCETDFV-----AKNAE--FQELA-NKIAKAALEKKP---------ADVEELKAAFEPGGKTVEEEIAALIAKIG  136 (296)
T ss_pred             EEEEEeccccce-----eCChh--HHHHH-HHHHHHHHHhCc---------ccHHHHHhhhcccCccHHHHHHHHHHHhc
Confidence            556667766665     33333  33333 333344433321         124444444444566899999999999 9


Q ss_pred             hhhhhhcccccCC-CCceEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh------------
Q psy3759         263 GKKILNISNRNAK-DGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ------------  327 (844)
Q Consensus       263 ~~~a~kk~~r~~~-eG~i~~y~~--~~~gviveln~etdfvA~n~~f~~la~~ia~~iaa~~p~~~~~------------  327 (844)
                      ++.-.+|...... +|.+++|+|  +++||+|++++. +      ...++|++||||+||++|.|++.            
T Consensus       137 ENi~lRR~~~~~~~~~~v~~Y~H~~griGVlv~~~~~-~------~~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~Er  209 (296)
T COG0264         137 ENISLRRFAVLEAGDGVVGSYLHGNGRIGVLVALKGG-A------ADEELAKDIAMHIAAMNPQYLSREDVPAEVVEKER  209 (296)
T ss_pred             cceeEEEEEEeecCcccEEEEEeCCCcEEEEEEEecc-c------hHHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHH
Confidence            9999988888763 468999999  799999999987 3      35689999999999999998665            


Q ss_pred             ----------------------------------hccccccCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeCCcee
Q psy3759         328 ----------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLI  370 (844)
Q Consensus       328 ----------------------------------l~q~~v~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g~~i~  370 (844)
                                                        ++|+|++|+++||++++++.      ++++.+|+||++|+||.
T Consensus       210 ~i~~~~~~~~gKP~~i~eKiVeGr~~Kf~~E~~Ll~Q~fV~d~~~TV~~~lke~------~~~v~~FvR~evGegie  280 (296)
T COG0264         210 EIFLAQLKAEGKPENIVEKIVEGRMNKFLAEVCLLEQPFVKDPKKTVEQLLKEA------NAKVTEFVRFEVGEGIE  280 (296)
T ss_pred             HHHHHHHHhcCChHHHHHHHHhHHHHHHHHHHhhccCceecCcchhHHHHHHhc------CceeeeeeeeeccCCce
Confidence                                              78999999999999999975      78999999999999874

>TIGR00116 tsf translation elongation factor Ts

Probab=99.51  E-value=9.1e-14  Score=148.04  Aligned_cols=156  Identities=22%  Similarity=0.256  Sum_probs=115.5

Q ss_pred             EEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHH
Q psy3759         182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK  261 (844)
Q Consensus       182 ~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~k  261 (844)
                      .-+++--||.++++.       ++..++.|.-.+. .+++.-         ....+.+..++....+..+ +++..+..+
T Consensus        69 ~~~ivElncETDFVA-------rne~F~~l~~~ia-~~~~~~---------~~~~~e~l~~~~~~~~~tv-d~i~~~~a~  130 (290)
T TIGR00116        69 KAVIVEVNSETDFVA-------KNAGFKEFANKLL-DELKAN---------KITTLEELQAQELENREKV-EYLAALAAK  130 (290)
T ss_pred             EEEEEEEecCCcccc-------CChHHHHHHHHHH-HHHHhc---------CCCCHHHHhhccccCCCcH-HHHHHHHHH
Confidence            567777788877763       3444555543333 222211         1122333332222233478 888888888


Q ss_pred             -hhhhhhhcccccCCC-CceEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh----------
Q psy3759         262 -LGKKILNISNRNAKD-GVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ----------  327 (844)
Q Consensus       262 -g~~~a~kk~~r~~~e-G~i~~y~~--~~~gviveln~etdfvA~n~~f~~la~~ia~~iaa~~p~~~~~----------  327 (844)
                       |++...+|..+.... |.++.|+|  |++||||++++++|.        +|+++|||||+|++|.+++.          
T Consensus       131 iGEnI~lrR~~~~~~~~~~v~~Y~H~~gkigvlv~~~~~~~~--------~~ak~iAmhIaA~~P~~l~~~~vp~~vie~  202 (290)
T TIGR00116       131 IGENINLRRVAVLEGDSNVIGSYLHAGARIGVLVALKGKADE--------ELAKHIAMHVAASKPQFIDPDDVSAEVVKK  202 (290)
T ss_pred             hccceEEEEEEEEecCCCcEEEEEcCCCcEEEEEEEecCchH--------HHHHHHHHHHHhcCCccCchhhCCHHHHHH
Confidence             999999999888664 79999999  799999999997662        58999999999999987654          


Q ss_pred             ------------------------------------hccccccCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeCCce
Q psy3759         328 ------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL  369 (844)
Q Consensus       328 ------------------------------------l~q~~v~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g~~i  369 (844)
                                                          ++|+|++|+++||++++++      .+++|.+|+||++|+|+
T Consensus       203 Erei~~~~~~~~gKP~~i~eKIv~Grl~Kf~~E~~Ll~Q~fv~D~~~tV~~~l~~------~~~~v~~F~R~~vGegi  274 (290)
T TIGR00116       203 ERQIQTDQAELSGKPKEIAEKMVEGRMKKFLAEISLLGQKFVMDPSKTVGQFLKE------KNAKVTEFIRFEVGEGI  274 (290)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHhhhHHHHHhhhceeeecccccCCccCHHHHHHH------cCCEEEEEEEEEecCCc
Confidence                                                6899999999999999997      45999999999999975

This protein is found in Bacteria, mitochondria, and chloroplasts.

>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]

Probab=99.49  E-value=4.1e-14  Score=146.40  Aligned_cols=110  Identities=26%  Similarity=0.324  Sum_probs=91.7

Q ss_pred             cCCHHHHHHHHHHH-hhhhhhhcccccCC-CCceEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCC
Q psy3759         248 NGKLSKAEEILRIK-LGKKILNISNRNAK-DGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPI  323 (844)
Q Consensus       248 ~~d~~~A~~~Lr~k-g~~~a~kk~~r~~~-eG~i~~y~~--~~~gviveln~etdfvA~n~~f~~la~~ia~~iaa~~p~  323 (844)
                      +..++.++..+..+ |++...+|+.+..+ +|.+++|+|  ||+|+||+++++++..      ++++++|||||+|++|.
T Consensus        62 ~~tv~d~i~~~i~~igEnI~l~r~~~~~~~~~~v~~Y~H~~gkig~lV~~~~~~~~~------~~~ak~iAmhIaA~~P~  135 (221)
T PF00889_consen   62 SKTVKDAIAELIAKIGENIQLRRAARISAPNGFVGSYVHNNGKIGVLVALEGDNDSA------KEFAKDIAMHIAAMNPK  135 (221)
T ss_dssp             SSHHHHHHHHHHHHH-S-EEEEEEEEEE-TTSEEEEEEET-TTEEEEEEEET-SHGG------HHHHHHHHHHHHHH--S
T ss_pred             cccHHHHHHHHHHHhCCCEEEeEEEEEeccCCEEEEEECCCCcEEEEEEEEcCcchH------HHHHHHHHHHHhhhCcc
Confidence            37889999999988 99999999999865 789999999  7999999999998864      68999999999999998


Q ss_pred             Chhh----------------------------------------------hccccccCCCccHHHHHHHHHHhcCCCeEE
Q psy3759         324 NLDQ----------------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKI  357 (844)
Q Consensus       324 ~~~~----------------------------------------------l~q~~v~~~~~tv~~~l~~~~~~~geni~l  357 (844)
                      +++.                                              ++|+|++|+++||+|++++..+.    |+|
T Consensus       136 ~l~~~~vp~~~~~~E~~i~~~~~~~~gKpe~i~ekIv~Gkl~k~~~e~~Ll~Q~fv~D~~~tV~~~l~~~~~~----i~v  211 (221)
T PF00889_consen  136 YLSEEDVPAEVLEKEKEIAKEQAKAEGKPENIIEKIVEGKLKKFYKENCLLEQPFVKDPKKTVKQYLKEVGKE----IKV  211 (221)
T ss_dssp             BSSCTGS-CCHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHCBTCCSBETTETTSBHHHHHHCTTHH-----EE
T ss_pred             ccCcccCCHHHHHHHHHHHHHHhhccCCcHHHHHHHhhhhHhheehheeecCCCccCCCCccHHHHHHhcCCC----cEE
Confidence            7654                                              78999999999999999876554    899


Q ss_pred             EEEEEeeeCC
Q psy3759         358 RRFKLFKTNN  367 (844)
Q Consensus       358 ~rf~~~~~g~  367 (844)
                      .+|.||++||
T Consensus       212 ~~F~R~~vGE  221 (221)
T PF00889_consen  212 VGFVRFEVGE  221 (221)
T ss_dssp             EEEEEEETTT
T ss_pred             EEEEEEecCC
Confidence            9999999986

EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the C-terminal dimerisation domain found primarily in EF-Tu (EF1A) proteins from bacteria, mitochondria and chloroplasts. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005622 intracellular; PDB: 1XB2_B 3AVU_A 3AVW_A 3AGQ_A 3AGP_A 3AVT_A 3AVY_A 3AVX_A 3AVV_A 1TFE_A ....

>PRK09377 tsf elongation factor Ts; Provisional

Probab=99.47  E-value=2.3e-13  Score=145.04  Aligned_cols=155  Identities=22%  Similarity=0.231  Sum_probs=117.2

Q ss_pred             EEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHHH
Q psy3759         182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK  261 (844)
Q Consensus       182 ~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~k  261 (844)
                      .-+++.-||.++++.       ++..+..|.-.+...+....          ...+.+..++-. .+..+..++..+..+
T Consensus        70 ~~~~vElncETDFVA-------rne~F~~l~~~i~~~~l~~~----------~~~~e~ll~~~~-~g~tv~d~i~~~~~~  131 (290)
T PRK09377         70 KGVLVEVNSETDFVA-------KNEDFQALANEVAEAALAAK----------PADVEALLALKL-DGGTVEEARTELIAK  131 (290)
T ss_pred             EEEEEEEecCCcccc-------CChHHHHHHHHHHHHHHhcC----------CCCHHHHHhccc-cCCcHHHHHHHHHHH
Confidence            467788888877763       44455555544333333211          112323222211 356899999999999


Q ss_pred             -hhhhhhhcccccC-CCCceEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh----------
Q psy3759         262 -LGKKILNISNRNA-KDGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ----------  327 (844)
Q Consensus       262 -g~~~a~kk~~r~~-~eG~i~~y~~--~~~gviveln~etdfvA~n~~f~~la~~ia~~iaa~~p~~~~~----------  327 (844)
                       |++...+|..+.. ++|.|+.|+|  |++||||+++++++         +|+++|||||+|++|.+++.          
T Consensus       132 iGEnI~l~R~~~~~~~~~~i~~Y~H~~gkigvlV~~~~~~~---------~~ak~iAMhIaA~~P~~l~~~~vp~~~i~~  202 (290)
T PRK09377        132 IGENISLRRFARLEKDGGVVGSYLHGGGRIGVLVALEGGDE---------ELAKDIAMHIAAMNPEYLSREDVPAEVVEK  202 (290)
T ss_pred             hcCceEEEEEEEEeecCCEEEEEEcCCCcEEEEEEEccCcH---------HHHHHHHHHHHhcCCccCChhhCCHHHHHH
Confidence             9999999988886 4789999999  79999999998642         58999999999999987554          


Q ss_pred             ------------------------------------hccccccCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeCCce
Q psy3759         328 ------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL  369 (844)
Q Consensus       328 ------------------------------------l~q~~v~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g~~i  369 (844)
                                                          ++|+|++|+++||++++++      .+++|.+|+||++||++
T Consensus       203 E~~i~~~~~~~~gKP~~i~eKIv~Grl~Kf~~e~~Ll~Q~fi~D~~~tV~~~l~~------~~i~v~~F~R~evGe~~  274 (290)
T PRK09377        203 EREIAKEQAKEEGKPEEIVEKIVEGRLNKFLKEVVLLEQPFVKDPKKTVGQLLKE------AGAKVVGFVRFEVGEGI  274 (290)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHhHHHHHHhhhceeccCcccCCCCcCHHHHHHH------cCCEEEEEEEEEecCcc
Confidence                                                6899999999999999997      46999999999999974

>CHL00098 tsf elongation factor Ts

Probab=99.04  E-value=2.1e-10  Score=116.07  Aligned_cols=90  Identities=31%  Similarity=0.446  Sum_probs=67.9

Q ss_pred             EEeeeCCceeeeccC-CceEEEEEecCCch---------hHHHHHHhhhccc-CCcccCccccchHHHhhhhhHHHHHHH
Q psy3759         361 KLFKTNNNLISYLHD-NKIGVIVEYNGDNE---------SAVKDVAMHIAAM-KPIALSSDQIPKKIIEKEYSLAVLKAQ  429 (844)
Q Consensus       361 ~~~~~g~~i~~Y~H~-~~~g~lv~~~~~~~---------~~~~~iamhi~a~-~p~~~~~~~vp~~~i~~e~~~iv~k~~  429 (844)
                      .|...++.+++|+|. |++||||++++..+         ++|++|||||||| +|.|+++++||++++++|++++..++.
T Consensus        50 ~r~~~eG~V~~yiH~~gk~gvlVeln~ETDfVArn~~F~~la~~IAmhiaA~p~p~~l~~~~vp~~~i~~E~~i~~~~~~  129 (200)
T CHL00098         50 TRITTEGLIESYIHTGGKLGVLVEINCETDFVARREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLEKKIESEKDD  129 (200)
T ss_pred             ccccccCeEEEEEecCCCEEEEEEEecCcccccccHHHHHHHHHHHHHHHcCCCCeEecHHHCCHHHHHHHHHHHHHHHH
Confidence            344444568999996 79999999988532         5789999999999 799999999999999999998777753


Q ss_pred             hhhhhhhcCCCCccc----chhhhhhhhhhh
Q psy3759         430 QLGEALMKGDAYNIN----SSIIKNIISEIS  456 (844)
Q Consensus       430 ~~~~~l~~g~~~~id----~~~i~~~a~~I~  456 (844)
                      .      .|+|..+-    +.++..+..++.
T Consensus       130 ~------~gKp~~i~ekiv~Grl~k~~~e~~  154 (200)
T CHL00098        130 L------QNKPEEIKEKIVEGRIKKRLKELS  154 (200)
T ss_pred             h------cCCcHHHHHHHHhhHHHHHHHHhh
Confidence            2      36665443    334455555554

>PRK12332 tsf elongation factor Ts; Reviewed

Probab=98.94  E-value=1e-09  Score=111.21  Aligned_cols=91  Identities=33%  Similarity=0.484  Sum_probs=67.4

Q ss_pred             EEEeeeCCceeeeccC-CceEEEEEecCC------ch---hHHHHHHhhhcccCCcccCccccchHHHhhhhhHHHHHHH
Q psy3759         360 FKLFKTNNNLISYLHD-NKIGVIVEYNGD------NE---SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQ  429 (844)
Q Consensus       360 f~~~~~g~~i~~Y~H~-~~~g~lv~~~~~------~~---~~~~~iamhi~a~~p~~~~~~~vp~~~i~~e~~~iv~k~~  429 (844)
                      .-|....+-|++|+|. |+.|+||++.+.      ++   +++++||||||||+|.|+++++||++++++|++++..++.
T Consensus        52 ~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDFVa~n~~F~~lak~iamhIaA~~P~~l~~~~v~~~~i~~E~~i~~~~~~  131 (198)
T PRK12332         52 AGRVAAEGLVGSYIHTGGRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVIEKEKEIYRAQAL  131 (198)
T ss_pred             ccccccCceEEEEEecCCCEEEEEEEeccCCccccCHHHHHHHHHHHHHHHhhCCccCChhhCCHHHHHHHHHHHHHHHH
Confidence            3444444558999996 799999988764      22   4799999999999999999999999999999998777753


Q ss_pred             hhhhhhhcCCCCcccc----hhhhhhhhhhh
Q psy3759         430 QLGEALMKGDAYNINS----SIIKNIISEIS  456 (844)
Q Consensus       430 ~~~~~l~~g~~~~id~----~~i~~~a~~I~  456 (844)
                      .      +|+|..+.+    .+++.+..++.
T Consensus       132 ~------~gKP~~i~ekiv~Grl~K~~~E~~  156 (198)
T PRK12332        132 N------EGKPENIVEKIVEGRIEKFYKEVC  156 (198)
T ss_pred             h------cCCcHHHHHHHHhHHHHHHHhhhh
Confidence            2      356644333    34445555544

>KOG2436|consensus

Probab=98.12  E-value=7.2e-06  Score=91.64  Aligned_cols=147  Identities=13%  Similarity=0.104  Sum_probs=103.4

Q ss_pred             cchhhhhhhhhhhhhhhCCCeEEEEeCchHHhhhcc---cccc----CC---CcchHHHHHHHHHHHHHHHHHHHHHHcC
Q psy3759         444 NSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS---NKIQ----NI---DRSTADYMGMLATIINSLALFDILNKSG  513 (844)
Q Consensus       444 d~~~i~~~a~~I~~l~~~G~~vVIVhGGG~~~~~~~---~~~~----~~---~~~~~~~~~~~~~~~~~~ll~~~L~~~g  513 (844)
                      .....+.++..++.+...|..+|||||+|.....+.   +...    +.   ++.++...-...+++.+.-+...|+++|
T Consensus       107 ~t~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~~~~~~~~E~n~~lv~nL~~~g  186 (520)
T KOG2436|consen  107 STSLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQAAKESVSLEANLNLVINLSQLG  186 (520)
T ss_pred             ccchHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHHhhhcchhhhhhHHHHHHHHhh
Confidence            667788899999999999999999999984433322   2211    11   3333333333345566666888899999


Q ss_pred             CceeEeehhchh--------------------hhhhccchHHHHHHHhCCCEEEEeC----CCCC-CCCcchHHHHHHHH
Q psy3759         514 IISHVMSAISIE--------------------KFLESYIPLNAIKYLEEGKVVIFAG----GIGN-PFFTTDTTAALRAA  568 (844)
Q Consensus       514 i~a~~l~~~~~~--------------------~~~~~~~~~~l~~lL~~g~VPVv~G----~~G~-~~~s~D~lAa~lA~  568 (844)
                      -.+++.++....                    .-+..++.+++..+++.|.+|+++.    .-|. -++++|.+|..+|.
T Consensus       187 ~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~  266 (520)
T KOG2436|consen  187 TRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELAL  266 (520)
T ss_pred             ceeccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHh
Confidence            888776654221                    0144678899999999999999875    1122 24679999999999


Q ss_pred             HcCCcEEEEeecccccccCCCC
Q psy3759         569 EIKAEIILKATKVDGIYNSDPN  590 (844)
Q Consensus       569 ~l~Ad~LiilTDVdGVyt~dP~  590 (844)
                      .|+|+.+++++|+.-+...+|+
T Consensus       267 ~L~~~kli~l~d~g~~l~e~ge  288 (520)
T KOG2436|consen  267 ALGPDKLILLMDKGRILKENGE  288 (520)
T ss_pred             ccCcceeEEecccccccccCcc
Confidence            9999999999998444444554

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=97.41  E-value=0.00014  Score=53.37  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=30.3

Q ss_pred             hhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHH
Q psy3759         224 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEIL  258 (844)
Q Consensus       224 ~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~L  258 (844)
                      ..+++|+.. |++..+|++||..++||++.|++||
T Consensus         4 ~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    4 EKVQQLMEM-GFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            357788888 9999999999999999999999998

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>KOG1071|consensus

Probab=96.83  E-value=0.00032  Score=74.32  Aligned_cols=109  Identities=17%  Similarity=0.210  Sum_probs=89.9

Q ss_pred             CHHHHHHHHHHH-hhhhhhhcccccCC--CCceEEEEe-------------CCEEEEEEEecCCchhccchHHHHHHHHH
Q psy3759         250 KLSKAEEILRIK-LGKKILNISNRNAK--DGVIAIYIS-------------EKVGSLVEINCETDFVAKNNEFIKFSKKI  313 (844)
Q Consensus       250 d~~~A~~~Lr~k-g~~~a~kk~~r~~~--eG~i~~y~~-------------~~~gviveln~etdfvA~n~~f~~la~~i  313 (844)
                      .+..++.....+ |++...||+-+..+  .+.++.|.|             |+.|+||.+|+....++   .+..+++.|
T Consensus       192 sl~d~l~~~i~~~GENvkvrR~~~~ka~~g~~l~~y~H~A~q~agt~~l~~g~~~alvAi~~~~s~~~---~~~~~~~~i  268 (340)
T KOG1071|consen  192 SLKDQLALAIGKLGENVKVRRAACMKAPSGTYLGSYSHGAPQSAGTHKLPLGEYGALVAINSVSSQLT---SLEDVAKQI  268 (340)
T ss_pred             eHHHHHHHHHHHhccceEEeEEEEEecCCCceEEeeecCCCCCccccccccccchhhhhhhhccchhh---hHHHHHHHH
Confidence            688888888888 99999999888643  456889998             36789998887665443   467899999


Q ss_pred             HHHHHhcCCCChhh----------------hccccccCCCccHHHHHHHHHHhcCCCeEEEEEEEeeeCC
Q psy3759         314 AKLITENTPINLDQ----------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN  367 (844)
Q Consensus       314 a~~iaa~~p~~~~~----------------l~q~~v~~~~~tv~~~l~~~~~~~geni~l~rf~~~~~g~  367 (844)
                      +.|++.|.|..+.+                +.|+|+-|+.+||.+++.      +-|.+|..|+||+.||
T Consensus       269 ~q~ivgm~p~s~~e~~k~e~~~~~e~et~ll~q~~lld~~itv~~~l~------~~~~~V~DfvR~E~Ge  332 (340)
T KOG1071|consen  269 CQHIVGMSPESVGESLKDEPGQGAEAETALLSQPSLLDPSITVKEYLD------PHNVSVVDFVRFEVGE  332 (340)
T ss_pred             HHHhhccChhhhcccccccccccccchhhheecHhhcCchhhHHHHhc------cCCcchHHHHHHHhcc
Confidence            99999999987651                678999999999999987      5688999999999987

>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=96.79  E-value=0.02  Score=62.68  Aligned_cols=195  Identities=17%  Similarity=0.127  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcCCccccccccCCCCCC-hHhHHHHHHHHHHHHhhh
Q psy3759          42 LEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTN-FKTIKTSIQRLKEMDLFI  120 (844)
Q Consensus        42 l~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lTN-~~~~~~~i~~~~~~~~~~  120 (844)
                      +...+..+.++...+.....++|+|.|+|.-....-.+..+++...-+-+...++.|.+.. +..+...+.-        
T Consensus        41 v~~~l~~I~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~--------  112 (299)
T PRK05441         41 VEKALPQIAAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEG--------  112 (299)
T ss_pred             HHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccc--------
Confidence            4556778888888888888999999999988766555555444332222222244444322 1211111100        


Q ss_pred             ccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCC----CcchHHHHHHhcCCCEEEEecCCCCC--Cc
Q psy3759         121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP--DG  194 (844)
Q Consensus       121 ~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~i~Dt~~~~--~~  194 (844)
                          .++..           +-....+.- .++ ..-|++|.+...    +-..+++.|+..|.|||+|++...+|  ..
T Consensus       113 ----~ed~~-----------~~~~~~l~~-~~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~  175 (299)
T PRK05441        113 ----AEDDA-----------ELGAADLKA-INL-TAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKE  175 (299)
T ss_pred             ----cCChH-----------HHHHHHHHh-cCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHh
Confidence                00000           000001100 011 357888888654    33467889999999999998644333  24


Q ss_pred             ceEEccCCC-----------ccchhhhhhhcccccchh--cch-------------------hhhhhhcccCcchHHHHH
Q psy3759         195 INYVIPGND-----------DSAKSIALYTKGIVDAFL--DAK-------------------TVGELRSKTLAPIMECKK  242 (844)
Q Consensus       195 i~ypIP~N~-----------ds~~si~~~~~~l~~ai~--~g~-------------------~v~~lr~~t~~~~~~ck~  242 (844)
                      .||+|....           .+..+..+++++|+..+.  .|+                   .++=+...||++..+|.+
T Consensus       176 aD~~I~~~~g~E~~~~st~~~s~taqk~iLn~lst~~~~~~gkv~~n~mvd~~~~n~kl~~ra~~i~~~~~~~~~~~a~~  255 (299)
T PRK05441        176 ADIAIEVVVGPEVLTGSTRMKAGTAQKLVLNMISTGVMIRLGKVYGNLMVDVKATNEKLVDRAVRIVMEATGVSREEAEA  255 (299)
T ss_pred             CCEEEEcCCCCccccccccccchhHHHHHHHHHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            667664331           244567778888877542  222                   122234568999999999


Q ss_pred             HHHhccCCHHHHHHHHHHH
Q psy3759         243 ALIEANGKLSKAEEILRIK  261 (844)
Q Consensus       243 aL~~~~~d~~~A~~~Lr~k  261 (844)
                      +|.+++|++.-|+-.+...
T Consensus       256 ~l~~~~~~vk~a~~~~~~~  274 (299)
T PRK05441        256 ALEAADGSVKLAIVMILTG  274 (299)
T ss_pred             HHHHhCCCcHHHHHHHHhC
Confidence            9999999999999877654

>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=96.34  E-value=0.072  Score=58.26  Aligned_cols=193  Identities=19%  Similarity=0.157  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcCCccccccccCCC-CCChHhHHHHHHHHHHHHhhhc
Q psy3759          43 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGL-LTNFKTIKTSIQRLKEMDLFIT  121 (844)
Q Consensus        43 ~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~-lTN~~~~~~~i~~~~~~~~~~~  121 (844)
                      ......|.++...+....+++|+|.|+|.-.-..-.+...+....-|-+....+.|. ...+..+...+.-         
T Consensus        38 ~~~~~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~---------  108 (296)
T PRK12570         38 EKVLPQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEG---------  108 (296)
T ss_pred             HHhHHHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccc---------
Confidence            345577888888888888999999999988765544444433333222221222222 2233322111110         


Q ss_pred             cCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCCcc----hHHHHHHhcCCCEEEEecCCCCC--Ccc
Q psy3759         122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP--DGI  195 (844)
Q Consensus       122 ~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~i~Dt~~~~--~~i  195 (844)
                         ..+.   +.+ +.+   .+..  .+   + ..-|++|++....+.    .+++.|+..|.|+|+|+....+|  +..
T Consensus       109 ---~ed~---~~~-~~~---~l~a--~~---l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~a  172 (296)
T PRK12570        109 ---AEDD---PEL-GAQ---DLKA--IG---L-TADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIA  172 (296)
T ss_pred             ---cCCc---HHH-HHH---HHHH--cC---C-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhC
Confidence               0000   000 000   0111  01   1 356999988766544    67899999999999998654433  346


Q ss_pred             eEEcc---CCC--------ccchhhhhhhcccccchhc--ch-----hh------hhh--------hcccCcchHHHHHH
Q psy3759         196 NYVIP---GND--------DSAKSIALYTKGIVDAFLD--AK-----TV------GEL--------RSKTLAPIMECKKA  243 (844)
Q Consensus       196 ~ypIP---~N~--------ds~~si~~~~~~l~~ai~~--g~-----~v------~~l--------r~~t~~~~~~ck~a  243 (844)
                      ||+|.   +..        .+..+..+++++|+..+..  |+     +|      .+|        .+-||++..+|.++
T Consensus       173 D~~I~~~~g~E~~~~st~~~s~taqk~vLd~L~t~~~~r~Gk~~~n~mvd~~~~n~kl~~Ra~~i~~~~~~~~~~~a~~~  252 (296)
T PRK12570        173 DIAISPVVGPEVLTGSTRLKSGTAQKMVLNMLSTASMIRLGKSYQNLMVDVKATNEKLVARAVRIVMQATGCSEDEAKEL  252 (296)
T ss_pred             CEEEeeCcCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhcCeEEEeecchHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            77774   222        2455777888888775522  22     21      233        34489999999999


Q ss_pred             HHhccCCHHHHHHHHHH
Q psy3759         244 LIEANGKLSKAEEILRI  260 (844)
Q Consensus       244 L~~~~~d~~~A~~~Lr~  260 (844)
                      |.+++|++.-|+-.+..
T Consensus       253 l~~~~~~vk~ai~~~~~  269 (296)
T PRK12570        253 LKESDNDVKLAILMILT  269 (296)
T ss_pred             HHHhCCccHHHHHHHHh
Confidence            99999999888886655

>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase

Probab=96.17  E-value=0.029  Score=60.12  Aligned_cols=188  Identities=19%  Similarity=0.136  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcCCccccccccCCCCC-ChHhHHHHHHHHHHHHhhhc
Q psy3759          43 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLT-NFKTIKTSIQRLKEMDLFIT  121 (844)
Q Consensus        43 ~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~lT-N~~~~~~~i~~~~~~~~~~~  121 (844)
                      .+.+..|.++...+....+++|+|.|+|.-.-..-.+...++...-|-....+++|.+. .+..+...+..         
T Consensus        29 ~~~l~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~---------   99 (257)
T cd05007          29 EAALPQIARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEG---------   99 (257)
T ss_pred             HHhHHHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccc---------
Confidence            34456788888888888899999999998776655544443333222222223444332 22222111100         


Q ss_pred             cCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCC----CcchHHHHHHhcCCCEEEEecCCCCC--Ccc
Q psy3759         122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP--DGI  195 (844)
Q Consensus       122 ~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~i~Dt~~~~--~~i  195 (844)
                         .++.+   ..  .  .+.+..     .++ ..-|++|++...    .-..+++.|++.|.|||+|+....+|  ...
T Consensus       100 ---~edd~---~~--~--~~~l~a-----~~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~a  163 (257)
T cd05007         100 ---AEDDE---EA--G--AADLQA-----INL-TERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLA  163 (257)
T ss_pred             ---cCChH---HH--H--HHHHHH-----cCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhC
Confidence               00000   00  0  000111     011 357888888754    33467889999999999998544333  235


Q ss_pred             eEEccCCC-----------ccchhhhhhhcccccchhc--ch-----hh------hhh--------hcccCcchHHHHHH
Q psy3759         196 NYVIPGND-----------DSAKSIALYTKGIVDAFLD--AK-----TV------GEL--------RSKTLAPIMECKKA  243 (844)
Q Consensus       196 ~ypIP~N~-----------ds~~si~~~~~~l~~ai~~--g~-----~v------~~l--------r~~t~~~~~~ck~a  243 (844)
                      |++|....           .+..+..+++++|+..+..  |+     ++      .+|        .+-||++..+|.++
T Consensus       164 D~~I~~~~g~E~~~~st~~~s~~aqk~vLn~L~t~~~~~~g~v~~n~mvd~~~~n~kl~~ra~~i~~~~~~~~~~~a~~~  243 (257)
T cd05007         164 DIAIALITGPEVVAGSTRLKAGTAQKLALNMLSTAVMIRLGKVYGNLMVDVRATNEKLRERAIRIVMEATGVSRDEAEAA  243 (257)
T ss_pred             CEEEEcCCCCccccCccccccHHHHHHHHHHHHHHHHHHcchHHHHHHHHhhcCHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            66664331           2345677788888765432  22     11      233        35589999999999


Q ss_pred             HHhccCCHHHHH
Q psy3759         244 LIEANGKLSKAE  255 (844)
Q Consensus       244 L~~~~~d~~~A~  255 (844)
                      |.+++|++..|+
T Consensus       244 l~~~~~~~k~a~  255 (257)
T cd05007         244 LEQAGGDVKTAI  255 (257)
T ss_pred             HHHhCCCceeee
Confidence            999999987765

Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=95.84  E-value=0.013  Score=53.99  Aligned_cols=73  Identities=26%  Similarity=0.274  Sum_probs=53.4

Q ss_pred             CCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHH
Q psy3759         180 IPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR  259 (844)
Q Consensus       180 IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr  259 (844)
                      =|.|...++...   -+|.|.|-..-.....--     ..-.....++.++++||++..+|++||.++|||+-.|+-+|.
T Consensus        42 ~P~V~~m~~~g~---~tY~I~Ge~~~e~~~~~~-----~~~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~  113 (115)
T PRK06369         42 NPQVTVMDAQGQ---KTYQIVGEPEEVEKEAEK-----EVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLS  113 (115)
T ss_pred             CCeEEEEecCCC---cEEEEEeccEEeeccccc-----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHh
Confidence            467777666433   678888875443211000     123456678999999999999999999999999999999997


Q ss_pred             H
Q psy3759         260 I  260 (844)
Q Consensus       260 ~  260 (844)
                      +
T Consensus       114 ~  114 (115)
T PRK06369        114 S  114 (115)
T ss_pred             c
Confidence            4

>TIGR00274 N-acetylmuramic acid 6-phosphate etherase

Probab=95.32  E-value=0.2  Score=54.70  Aligned_cols=106  Identities=14%  Similarity=0.048  Sum_probs=73.4

Q ss_pred             CCCEEEEeCCCCc----chHHHHHHhcCCCEEEEecCCCC--CCcceEEccCC-----------Cccchhhhhhhccccc
Q psy3759         156 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHS--PDGINYVIPGN-----------DDSAKSIALYTKGIVD  218 (844)
Q Consensus       156 ~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~i~Dt~~~--~~~i~ypIP~N-----------~ds~~si~~~~~~l~~  218 (844)
                      .-|++|++....+    ..+++.|++.|.|+|+|+....+  .+..|++|+..           -.|.-+..+++++|+.
T Consensus       126 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~~~g~E~~~~st~~~s~~aqk~iLd~L~t  205 (291)
T TIGR00274       126 KNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIETIVGPEILTGSSRLKAGTAQKMVLNMLST  205 (291)
T ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEecCCCCccccccchhhHHHHHHHHHHHHHH
Confidence            5688888865533    35778999999999999743322  23466666542           1345566678888877


Q ss_pred             ch--hcch-----hh------hh--------hhcccCcchHHHHHHHHhccCCHHHHHHHHHHH
Q psy3759         219 AF--LDAK-----TV------GE--------LRSKTLAPIMECKKALIEANGKLSKAEEILRIK  261 (844)
Q Consensus       219 ai--~~g~-----~v------~~--------lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~k  261 (844)
                      .+  ..|+     +|      .+        +.+-||++..+|.++|.+++|++.-|+-.+...
T Consensus       206 ~~~~~~gk~~~n~mvd~~~~N~kl~~Ra~~i~~~~~~~~~~~a~~~l~~~~~~vk~Ai~~~~~~  269 (291)
T TIGR00274       206 ASMIKLGKVYENLMVDVQASNEKLKARAVRIVRQATDCNKELAEQTLLAADQNVKLAIVMILST  269 (291)
T ss_pred             HHHHhcchhhcCeEEeeecccHHHHHHHHHHHHHHhCcCHHHHHHHHHHhCCCcHHHHHHHHhC
Confidence            55  2333     21      23        335589999999999999999999999877653

This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.

>TIGR00264 alpha-NAC-related protein

Probab=94.84  E-value=0.021  Score=52.52  Aligned_cols=72  Identities=19%  Similarity=0.251  Sum_probs=54.8

Q ss_pred             cCCCEEEEecCCCCCCcceEEccCCCccchhhhhhhcccccchhcchhhhhhhcccCcchHHHHHHHHhccCCHHHHHHH
Q psy3759         178 LNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEI  257 (844)
Q Consensus       178 l~IP~i~i~Dt~~~~~~i~ypIP~N~ds~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~  257 (844)
                      ..-|.|.+.+.--   .-+|-|-|..... .+.      ...-.....++.++++||++..+|++||.++|||+-.|+-+
T Consensus        44 f~~p~V~~m~~~G---~~tYqI~G~~~~~-~~~------~~~~i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~  113 (116)
T TIGR00264        44 FENPKVQVMDILG---VKTYQITGKPKKE-KVE------EEEEITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMK  113 (116)
T ss_pred             EecCeeEEEecCC---cEEEEEecccEEe-ecc------cccCCCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHH
Confidence            5678888887753   3788888876532 100      00124556788999999999999999999999999999998


Q ss_pred             HH
Q psy3759         258 LR  259 (844)
Q Consensus       258 Lr  259 (844)
                      |-
T Consensus       114 L~  115 (116)
T TIGR00264       114 LE  115 (116)
T ss_pred             hh
Confidence            85

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>smart00165 UBA Ubiquitin associated domain

Probab=94.46  E-value=0.043  Score=40.07  Aligned_cols=26  Identities=38%  Similarity=0.328  Sum_probs=24.6

Q ss_pred             cCcchHHHHHHHHhccCCHHHHHHHH
Q psy3759         233 TLAPIMECKKALIEANGKLSKAEEIL  258 (844)
Q Consensus       233 t~~~~~~ck~aL~~~~~d~~~A~~~L  258 (844)
                      .|.+..+|+.||..++||+++|++||
T Consensus        11 mGf~~~~a~~aL~~~~~d~~~A~~~L   36 (37)
T smart00165       11 MGFSREEALKALRAANGNVERAAEYL   36 (37)
T ss_pred             cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            38899999999999999999999998

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>cd00194 UBA Ubiquitin Associated domain

Probab=94.11  E-value=0.057  Score=39.63  Aligned_cols=32  Identities=28%  Similarity=0.210  Sum_probs=27.5

Q ss_pred             hhhhcccCcchHHHHHHHHhccCCHHHHHHHHH
Q psy3759         227 GELRSKTLAPIMECKKALIEANGKLSKAEEILR  259 (844)
Q Consensus       227 ~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr  259 (844)
                      .+|.. .|.+...|..||..++||+++|++||.
T Consensus         6 ~~L~~-mGf~~~~~~~AL~~~~~d~~~A~~~L~   37 (38)
T cd00194           6 EQLLE-MGFSREEARKALRATNNNVERAVEWLL   37 (38)
T ss_pred             HHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence            34444 488999999999999999999999985

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]

Probab=85.97  E-value=0.72  Score=42.85  Aligned_cols=34  Identities=29%  Similarity=0.214  Sum_probs=30.0

Q ss_pred             hhhhhhcccCcchHHHHHHHHhccCCHHHHHHHH
Q psy3759         225 TVGELRSKTLAPIMECKKALIEANGKLSKAEEIL  258 (844)
Q Consensus       225 ~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~L  258 (844)
                      .++-.-++||++..++.|||+|+|||+-.|+--|
T Consensus        87 DIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L  120 (122)
T COG1308          87 DIKLVMEQAGVSREEAIKALEEAGGDLAEAIMKL  120 (122)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHh
Confidence            4566678899999999999999999999998766

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=84.73  E-value=0.91  Score=34.41  Aligned_cols=36  Identities=19%  Similarity=-0.049  Sum_probs=29.5

Q ss_pred             hhhhhhcccCcchHHHHHHHHhccCCHHHHHHHHHH
Q psy3759         225 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI  260 (844)
Q Consensus       225 ~v~~lr~~t~~~~~~ck~aL~~~~~d~~~A~~~Lr~  260 (844)
                      .+.++..-||+.-..|.+-|+.++||++.|++.--.
T Consensus         3 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~   38 (43)
T PF14555_consen    3 KIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFD   38 (43)
T ss_dssp             HHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            466778889999999999999999999999987544

>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]

Probab=82.04  E-value=33  Score=34.06  Aligned_cols=135  Identities=16%  Similarity=0.169  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcCCccccccccCCC-CC-ChHhHHHHHHHHHHHHhhh
Q psy3759          43 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGL-LT-NFKTIKTSIQRLKEMDLFI  120 (844)
Q Consensus        43 ~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~-lT-N~~~~~~~i~~~~~~~~~~  120 (844)
                      +.-...+.+|...+..-..+|++||..|+--.+.++-.-.++.+|-|....+=+|+. || |...+..--          
T Consensus        21 ~~l~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~----------   90 (176)
T COG0279          21 EALIEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIA----------   90 (176)
T ss_pred             HHhHHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhh----------
Confidence            455677889999999999999999999988877677665677778776666667764 44 766442221          


Q ss_pred             ccCccccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCCcc----hHHHHHHhcCCCEEEEecCCC----CC
Q psy3759         121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNH----SP  192 (844)
Q Consensus       121 ~~~~~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~i~Dt~~----~~  192 (844)
                      .+     |.-.+  .|.|+.+-          +.+.-|+++=+.+.-|.    .|++.|..+++-||++.-.|-    ..
T Consensus        91 ND-----y~yd~--vFsRqveA----------~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~  153 (176)
T COG0279          91 ND-----YGYDE--VFSRQVEA----------LGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGL  153 (176)
T ss_pred             cc-----ccHHH--HHHHHHHh----------cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence            11     22211  23443322          23567888888776543    578899999999999975443    22


Q ss_pred             CcceEEccCCCc
Q psy3759         193 DGINYVIPGNDD  204 (844)
Q Consensus       193 ~~i~ypIP~N~d  204 (844)
                      -.+.+.||..+.
T Consensus       154 ~D~~i~VPs~~t  165 (176)
T COG0279         154 LDVEIRVPSTDT  165 (176)
T ss_pred             cceEEecCCCcc
Confidence            235556677643

>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D

Probab=80.54  E-value=14  Score=35.38  Aligned_cols=115  Identities=19%  Similarity=0.168  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhhccCCCeEEEEecccchHHHHHHHHHHcCCccccccc-cCCCCCChHhHHHHHHHHHHHHhhhccCc
Q psy3759          46 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW-LGGLLTNFKTIKTSIQRLKEMDLFITNGS  124 (844)
Q Consensus        46 ~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw-~~G~lTN~~~~~~~i~~~~~~~~~~~~~~  124 (844)
                      ...+.+|...+.....+||+|.++|+-.-.... ..++.+.+..+-..++ .+...-+-......   -..++   ....
T Consensus        18 ~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~---~~~~   90 (138)
T PF13580_consen   18 AEAIEKAADLIAEALRNGGRIFVCGNGHSAAIA-SHFAADLGGLFGVNRILLPAIALNDDALTAI---SNDLE---YDEG   90 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT--EEEEESTHHHHHH-HHHHHHHHCHSSSTSSS-SEEETTSTHHHHH---HHHTT---GGGT
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEcCchhhhHH-HHHHHHHhcCcCCCcccccccccccchHhhh---hcccc---hhhH
Confidence            567899999999999999999999987654333 3444444433333344 33322221100000   01110   0111


Q ss_pred             cccCChHHHHHHHHHHHHHHHhhccccCCCCCCCEEEEeCCCCc-c---hHHHHHHhcCCCEEEEe
Q psy3759         125 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYH-K---GAVSEAIKLNIPIIGVV  186 (844)
Q Consensus       125 ~~~~~kk~~~~~~r~~~kl~~~~~g~~~~~~~P~~vii~~~~~~-~---~ai~Ea~~l~IP~i~i~  186 (844)
                                 +-+   .+...+.+     +.-|++|+++..-+ .   .|+.+|++.|.+||+|.
T Consensus        91 -----------~~~---~~~~~~~~-----~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT  137 (138)
T PF13580_consen   91 -----------FAR---QLLALYDI-----RPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT  137 (138)
T ss_dssp             -----------HHH---HHHHHTT-------TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred             -----------HHH---HHHHHcCC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence                       111   12222221     46799998865433 2   36789999999999984

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	844
1p87_B	240	Real Space Refined Coordinates Of The 30s Subunit F		1e-63
1vs5_B	241	Crystal Structure Of The Bacterial Ribosome From Es		1e-63
2gy9_B	236	Structure Of The 30s Subunit Of A Pre-Translocation		6e-63
3fih_B	218	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		2e-62
1fjg_B	256	Structure Of The Thermus Thermophilus 30s Ribosomal		3e-57
1i94_B	255	Crystal Structures Of The Small Ribosomal Subunit W		3e-57
2e5l_B	227	A Snapshot Of The 30s Ribosomal Subunit Capturing M		8e-57
1pns_B	234	Crystal Structure Of A Streptomycin Dependent Ribos		6e-56
3fic_B	235	T. Thermophilus 70s Ribosome In Complex With Mrna,		7e-56
1x18_E	231	Contact Sites Of Era Gtpase On The Thermus Thermoph		4e-54
1ybd_A	239	Crystal Structure Analysis Of Uridylate Kinase From		2e-43
3ek5_A	243	Unique Gtp-Binding Pocket And Allostery Of Ump Kina		2e-43
3bbn_B	231	Homology Model For The Spinach Chloroplast 30s Subu		1e-42
2bnd_A	241	The Structure Of E.Coli Ump Kinase In Complex With		1e-39
2bne_A	241	The Structure Of E. Coli Ump Kinase In Complex With		2e-39
3nwy_A	281	Structure And Allosteric Regulation Of The Uridine		5e-39
2a1f_A	247	Crystal Structure Of Uridylate Kinase Length = 247		9e-38
2bnf_A	241	The Structure Of E. Coli Ump Kinase In Complex With		3e-35
1is1_A	185	Crystal Structure Of Ribosome Recycling Factor From		6e-35
1ek8_A	185	Crystal Structure Of The Ribosome Recycling Factor		6e-33
4gd1_Y	183	Structures Of The Bacterial Ribosome In Classical A		8e-33
1ise_A	185	Crystal Structure Of A Mutant Of Ribosome Recycling		5e-32
4a7w_A	240	Crystal Structure Of Uridylate Kinase From Helicoba		2e-31
1eh1_A	185	Ribosome Recycling Factor From Thermus Thermophilus		7e-31
4gfq_A	209	2.65 Angstrom Resolution Crystal Structure Of Ribos		1e-30
2jjx_A	255	The Crystal Structure Of Ump Kinase From Bacillus A		2e-30
2va1_A	256	Crystal Structure Of Ump Kinase From Ureaplasma Par		1e-29
1z9d_A	252	Crystal Structure Of A Putative Uridylate Kinase (U		8e-29
3mmp_A	678	Structure Of The Qb Replicase, An Rna-Dependent Rna		1e-27
3agp_A	1289	Structure Of Viral Polymerase Form I Length = 1289		1e-27
1efu_B	282	Elongation Factor Complex Ef-TuEF-Ts From Escherich		4e-27
1wqf_A	185	Crystal Structure Of Ribosome Recycling Factor From		2e-26
1dd5_A	185	Crystal Structure Of Thermotoga Maritima Ribosome R		1e-25
1ge9_A	184	Solution Structure Of The Ribosome Recycling Factor		1e-23
1aip_C	196	Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt		8e-11
1aip_C	196	Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt		1e-04
1y69_8	113	Rrf Domain I In Complex With The 50s Ribosomal Subu		7e-09
1xb2_B	291	Crystal Structure Of Bos Taurus Mitochondrial Elong		2e-08
1vi6_A	208	Crystal Structure Of Ribosomal Protein S2p Length =		2e-05
1vi5_A	208	Crystal Structure Of Ribosomal Protein S2p Length =		2e-05
1tfe_A	145	Dimerization Domain Of Ef-Ts From T. Thermophilus L		6e-05
1tfe_A	145	Dimerization Domain Of Ef-Ts From T. Thermophilus L		1e-04
3lf9_A	121	Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1		1e-04

>pdb|1P87|B Chain B, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome Length = 240

Iteration: 1
 Score =  241 bits (615), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 115/246 (46%), Positives = 173/246 (70%), Gaps = 8/246 (3%)
Query: 2   SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGF 61
           ++++R+ML+AGVHFGHQTR+WNPKM  +IFG RNK+HIINLEKT+ M+ +A+  + ++  
Sbjct: 2   TVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIAS 61
Query: 62  SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 121
            KG +LFVGTKR A   + + A+     F++ RWLGG+LTN+KT++ SI+RLK+++    
Sbjct: 62  RKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQ 121
Query: 122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181
           +G+  KL+KKEAL+  R+  KL   +GGIK+M  +PDA+F+ID  +   A+ EA  L IP
Sbjct: 122 DGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIP 181
Query: 182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECK 241
           +  +VDTN  PDG+++VIPGNDD+ +++ LY   +      A TV E RS+ LA   + +
Sbjct: 182 VFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAV------AATVREGRSQDLAS--QAE 233
Query: 242 KALIEA 247
           ++ +EA
Sbjct: 234 ESFVEA 239

>pdb|1VS5|B Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 241

Iteration: 1
 Score =  241 bits (614), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 115/246 (46%), Positives = 173/246 (70%), Gaps = 8/246 (3%)
Query: 2   SITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGF 61
           ++++R+ML+AGVHFGHQTR+WNPKM  +IFG RNK+HIINLEKT+ M+ +A+  + ++  
Sbjct: 3   TVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIAS 62
Query: 62  SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 121
            KG +LFVGTKR A   + + A+     F++ RWLGG+LTN+KT++ SI+RLK+++    
Sbjct: 63  RKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQ 122
Query: 122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181
           +G+  KL+KKEAL+  R+  KL   +GGIK+M  +PDA+F+ID  +   A+ EA  L IP
Sbjct: 123 DGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIP 182
Query: 182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECK 241
           +  +VDTN  PDG+++VIPGNDD+ +++ LY   +      A TV E RS+ LA   + +
Sbjct: 183 VFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAV------AATVREGRSQDLAS--QAE 234
Query: 242 KALIEA 247
           ++ +EA
Sbjct: 235 ESFVEA 240

>pdb|2GY9|B Chain B, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 236

Iteration: 1
 Score =  239 bits (609), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 115/243 (47%), Positives = 170/243 (69%), Gaps = 8/243 (3%)
Query: 5   IREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKG 64
           +R+ML+AGVHFGHQTR+WNPKM  +IFG RNK+HIINLEKT+ M+ +A+  + ++   KG
Sbjct: 1   MRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKG 60
Query: 65  TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGS 124
            +LFVGTKR A   + + A+     F++ RWLGG+LTN+KT++ SI+RLK+++    +G+
Sbjct: 61  KILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGT 120
Query: 125 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIG 184
             KL+KKEAL+  R+  KL   +GGIK+M  +PDA+F+ID  +   A+ EA  L IP+  
Sbjct: 121 FDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFA 180
Query: 185 VVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKAL 244
           +VDTN  PDG+++VIPGNDD+ +++ LY   +      A TV E RS+ LA   + +++ 
Sbjct: 181 IVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAV------AATVREGRSQDLAS--QAEESF 232
Query: 245 IEA 247
           +EA
Sbjct: 233 VEA 235

>pdb|3FIH|B Chain B, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 218

Iteration: 1
 Score =  237 bits (604), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/224 (49%), Positives = 157/224 (70%), Gaps = 6/224 (2%)
Query: 8   MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 67
           ML+AGVHFGHQTR+WNPKM  +IFG RNK+HIINLEKT+ M+ +A+  + ++   KG +L
Sbjct: 1   MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 60
Query: 68  FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 127
           FVGTKR A   + + A+     F++ RWLGG+LTN+KT++ SI+RLK+++    +G+  K
Sbjct: 61  FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 120
Query: 128 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 187
           L+KKEAL+  R+  KL   +GGIK+M  +PDA+F+ID  +   A+ EA  L IP+  +VD
Sbjct: 121 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 180
Query: 188 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRS 231
           TN  PDG+++VIPGNDD+ +++ LY   +      A TV E RS
Sbjct: 181 TNSDPDGVDFVIPGNDDAIRAVTLYLGAV------AATVREGRS 218

>pdb|1FJG|B Chain B, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 256

Iteration: 1
 Score =  220 bits (560), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 102/224 (45%), Positives = 150/224 (66%)
Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           + IT++E+LEAGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L 
Sbjct: 3   VEITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLA 62
Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
              GT+LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI   + RL+E++   
Sbjct: 63  MRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALF 122
Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +  I +  KKE +    +  +L + + G + +  +PDAIF++D      AV EA KL I
Sbjct: 123 ASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFI 182
Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           P+I + DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+
Sbjct: 183 PVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 226

>pdb|1I94|B Chain B, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 255

Iteration: 1
 Score =  220 bits (560), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 102/224 (45%), Positives = 150/224 (66%)
Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           + IT++E+LEAGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L 
Sbjct: 2   VEITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLA 61
Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
              GT+LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI   + RL+E++   
Sbjct: 62  MRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALF 121
Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +  I +  KKE +    +  +L + + G + +  +PDAIF++D      AV EA KL I
Sbjct: 122 ASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFI 181
Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           P+I + DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+
Sbjct: 182 PVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 225

>pdb|2E5L|B Chain B, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via The Shine- Dalgarno Interaction Length = 227

Iteration: 1
 Score =  218 bits (556), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 102/224 (45%), Positives = 150/224 (66%)
Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           + IT++E+LEAGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L 
Sbjct: 2   VEITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLA 61
Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
              GT+LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI   + RL+E++   
Sbjct: 62  MRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALF 121
Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +  I +  KKE +    +  +L + + G + +  +PDAIF++D      AV EA KL I
Sbjct: 122 ASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFI 181
Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           P+I + DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+
Sbjct: 182 PVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 225

>pdb|1PNS|B Chain B, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 234

Iteration: 1
 Score =  216 bits (549), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 100/220 (45%), Positives = 147/220 (66%)
Query: 5   IREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKG 64
           ++E+LEAGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L    G
Sbjct: 1   VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGG 60
Query: 65  TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGS 124
           T+LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI   + RL+E++    +  
Sbjct: 61  TILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPE 120
Query: 125 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIG 184
           I +  KKE +    +  +L + + G + +  +PDAIF++D      AV EA KL IP+I 
Sbjct: 121 IEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIA 180
Query: 185 VVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           + DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+
Sbjct: 181 LADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 220

>pdb|3FIC|B Chain B, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 235

Iteration: 1
 Score =  215 bits (548), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 100/220 (45%), Positives = 147/220 (66%)
Query: 5   IREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKG 64
           ++E+LEAGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L    G
Sbjct: 1   VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGG 60
Query: 65  TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGS 124
           T+LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI   + RL+E++    +  
Sbjct: 61  TILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPE 120
Query: 125 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIG 184
           I +  KKE +    +  +L + + G + +  +PDAIF++D      AV EA KL IP+I 
Sbjct: 121 IEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIA 180
Query: 185 VVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           + DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+
Sbjct: 181 LADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 220

>pdb|1X18|E Chain E, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 231

Iteration: 1
 Score =  209 bits (533), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 101/220 (45%), Positives = 148/220 (67%), Gaps = 3/220 (1%)
Query: 5   IREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKG 64
           ++E+LEAGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L    G
Sbjct: 1   VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGG 60
Query: 65  TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGS 124
           T+LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI+  + RL+E++    +  
Sbjct: 61  TILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTIQ-RVHRLEELEALFASPE 119
Query: 125 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIG 184
           I +  KKE  L   +  +L + + G + +  +PDAIF++D      AV EA KL IP+I 
Sbjct: 120 IEERPKKEQRL--HELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIA 177
Query: 185 VVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           + DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+
Sbjct: 178 LADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 217

>pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From Neisseria Meningitidis Length = 239

Iteration: 1
 Score =  174 bits (441), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 93/182 (51%), Positives = 119/182 (65%)
Query: 473 NICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYI 532
           NI RG+S +  + DR+TADY G  AT+ N+LAL D     GI + V SA+S ++  E+Y 
Sbjct: 57  NIFRGVSAQAGSXDRATADYXGXXATVXNALALKDAFETLGIKARVQSALSXQQIAETYA 116
Query: 533 PLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGIYNSDPNKC 592
              AI+YLEEGKVVIFA G GNPFFTTD                    VDG+Y +DP K 
Sbjct: 117 RPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEXNCDVXLKATNVDGVYTADPKKD 176
Query: 593 LSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTL 652
            SA  Y+ ITFDE + K L++ D+TAF+ CR++KL I VF I K G+LKRVI G++EGTL
Sbjct: 177 PSATRYETITFDEALLKNLKVXDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTL 236
Query: 653 VY 654
           V+
Sbjct: 237 VH 238

>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From A Gram- Negative Phytopathogen Bacterium Length = 243

Iteration: 1
 Score =  174 bits (441), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 97/236 (41%), Positives = 126/236 (53%), Gaps = 2/236 (0%)
Query: 418 EKEYSLAVLKAQQLGEALMKGDAYXXXXXXXXXXXXXXXXXXXXXXXLAIVIGGGNICRG 477
           E  Y   +LK    GEALM    Y                       +A+VIGGGNI RG
Sbjct: 6   ELSYRRILLKLS--GEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRG 63
Query: 478 ISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAI 537
                  +DR T D+MGMLAT+IN+LA+ D L K G    VMSAI I    E +I   AI
Sbjct: 64  AGLAASGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAI 123
Query: 538 KYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGIYNSDPNKCLSAII 597
           ++LE+G++ IFA G GNPFFTTD                    VDG+Y+ DP K   A+ 
Sbjct: 124 RHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVR 183
Query: 598 YKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
           Y  +T+DEVI + LE+MD+ AF+  RD  LP+R+F + + G L R++ G   GTLV
Sbjct: 184 YDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLV 239

>pdb|3BBN|B Chain B, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 231

Iteration: 1
 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 130/225 (57%)
Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
            +I + EM+EAGVHFGH TR WNP+MS YI      IHIINL +T     +A   ++   
Sbjct: 2   WNINLEEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDAS 61
Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
                 L VGTK +A   +A  A+RA   +++++WLGG+LTN+ T +T + + +++ +  
Sbjct: 62  SRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQ 121
Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
           T G + +L K++A +  R+   L   +GGIK M  +PD + I+D      A+ E I L I
Sbjct: 122 TAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGI 181
Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225
           P I ++DTN +PD  +  IP NDD+  SI L    +V A  + ++
Sbjct: 182 PTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRS 226

>pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp Length = 241

Iteration: 1
 Score =  161 bits (407), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/191 (41%), Positives = 119/191 (62%)
Query: 465 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 524
           + +VIGGGN+ RG       ++R   D+MGMLAT++N LA+ D L+++ + + +MSAI +
Sbjct: 51  VGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPL 110
Query: 525 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 584
               +SY    AI  L   +VVI + G GNPFFTTD                    VDG+
Sbjct: 111 NAVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGV 170
Query: 585 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 644
           + +DP K  +A +Y+++T+ EV+ K+L++MD  AF+  RD KLPIRVF++ K GAL+RV+
Sbjct: 171 FTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVV 230
Query: 645 EGKNEGTLVYE 655
            G+ EGTL+ E
Sbjct: 231 MGEKEGTLITE 241

>pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump Length = 241

Iteration: 1
 Score =  161 bits (407), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/191 (41%), Positives = 119/191 (62%)
Query: 465 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 524
           + +VIGGGN+ RG       ++R   D+MGMLAT++N LA+ D L+++ + + +MSAI +
Sbjct: 51  VGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPL 110
Query: 525 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 584
               +SY    AI  L   +VVI + G GNPFFTTD                    VDG+
Sbjct: 111 NGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGV 170
Query: 585 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 644
           + +DP K  +A +Y+++T+ EV+ K+L++MD  AF+  RD KLPIRVF++ K GAL+RV+
Sbjct: 171 FTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVV 230
Query: 645 EGKNEGTLVYE 655
            G+ EGTL+ E
Sbjct: 231 MGEKEGTLITE 241

>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine Monophosphate Kinase From Mycobacterium Tuberculosis Length = 281

Iteration: 1
 Score =  159 bits (403), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 115/189 (60%)
Query: 465 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 524
           +A+VIGGGN  RG   +   ++R+ +DYMGML T++NSLAL D L K GI++ V +AI++
Sbjct: 91  IAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITM 150
Query: 525 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 584
            +  E Y+PL A+++LE+G+VVIF  G+G P+F+TD                    VDG+
Sbjct: 151 GQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGV 210
Query: 585 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 644
           +  DP     A +   ++  EV+ + L + D+TAFS C D  +PI VF+++  G + R +
Sbjct: 211 FAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAV 270
Query: 645 EGKNEGTLV 653
            G+  GTLV
Sbjct: 271 RGEKIGTLV 279

>pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase Length = 247

Iteration: 1
 Score =  155 bits (392), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 78/191 (40%), Positives = 117/191 (61%)
Query: 465 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 524
           +++V+GGGN+ RG       ++R   D+MGMLAT++N LA+ D L ++ + + +MSA  +
Sbjct: 50  VSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQL 109
Query: 525 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 584
               ++Y    AIK L E +VVIF+ G GNPFFTTD                    VDG+
Sbjct: 110 NGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGV 169
Query: 585 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 644
           Y+ DP K   A +YK +++ EVI K+L++MD +AF+  RD  +PIRVF++ K GAL++V+
Sbjct: 170 YDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVV 229
Query: 645 EGKNEGTLVYE 655
            G  EGT + E
Sbjct: 230 TGTEEGTTICE 240

>pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp Length = 241

Iteration: 1
 Score =  147 bits (370), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/191 (39%), Positives = 110/191 (57%)
Query: 465 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 524
           + +VIGGGN+ RG        +R   D+ G LAT+ N LA  D L+++ + + + SAI +
Sbjct: 51  VGVVIGGGNLFRGAGLAKAGXNRVVGDHXGXLATVXNGLAXRDALHRAYVNARLXSAIPL 110
Query: 525 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGI 584
               +SY    AI  L   +VVI + G GNPFFTTD                    VDG+
Sbjct: 111 NGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGV 170
Query: 585 YNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 644
           + +DP K  +A  Y+++T+ EV+ K+L++ D  AF+  RD KLPIRVF+  K GAL+RV+
Sbjct: 171 FTADPAKDPTATXYEQLTYSEVLEKELKVXDLAAFTLARDHKLPIRVFNXNKPGALRRVV 230
Query: 645 EGKNEGTLVYE 655
            G+ EGTL+ E
Sbjct: 231 XGEKEGTLITE 241

>pdb|1IS1|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Vibrio Parahaemolyticus Length = 185

Iteration: 1
 Score =  146 bits (368), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 125/185 (67%)
Query: 660 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLF 719
           +I++IKK+ +++M  +++ LK NL KVRTGRA+  +L  I V+Y+   T L ++AN+   
Sbjct: 1   MINEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAE 60
Query: 720 NSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNI 779
           ++ T++I  F+KE++  ++KAI  ++LGLNP   G II V +PPLT+ERR+++VK+++  
Sbjct: 61  DARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGE 120
Query: 780 TEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 839
            E  ++++R IRRD+N            S D + +AQ +IQKLTD  + +I+++L  KEK
Sbjct: 121 AEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEK 180
Query: 840 EILTL 844
           E++ +
Sbjct: 181 ELMEV 185

>pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf) From Escherichia Coli Length = 185

Iteration: 1
 Score =  139 bits (351), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 69/183 (37%), Positives = 120/183 (65%)
Query: 660 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLF 719
           +ISDI+K+ + +M   ++  K  + K+RTGRA+  +LD I V+Y+   T L ++A++T+ 
Sbjct: 1   MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE 60
Query: 720 NSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNI 779
           +S T+ I  F++ MS  ++KAI  ++LGLNP   G+ I V +PPLT+ERR+++ K+++  
Sbjct: 61  DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE 120
Query: 780 TEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 839
            E+ ++++R +RRD+N+           S D++ R+Q D+QKLTD  I +I   L +KE 
Sbjct: 121 AEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA 180
Query: 840 EIL 842
           E++
Sbjct: 181 ELM 183

>pdb|4GD1|Y Chain Y, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding Length = 183

Iteration: 1
 Score =  139 bits (349), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 69/182 (37%), Positives = 119/182 (65%)
Query: 661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 720
           ISDI+K+ + +M   ++  K  + K+RTGRA+  +LD I V+Y+   T L ++A++T+ +
Sbjct: 2   ISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVED 61
Query: 721 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 780
           S T+ I  F++ MS  ++KAI  ++LGLNP   G+ I V +PPLT+ERR+++ K+++   
Sbjct: 62  SRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEA 121
Query: 781 EETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 840
           E+ ++++R +RRD+N+           S D++ R+Q D+QKLTD  I +I   L +KE E
Sbjct: 122 EQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAE 181
Query: 841 IL 842
           ++
Sbjct: 182 LM 183

>pdb|1ISE|A Chain A, Crystal Structure Of A Mutant Of Ribosome Recycling Factor From Escherichia Coli, Arg132gly Length = 185

Iteration: 1
 Score =  136 bits (343), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/183 (37%), Positives = 119/183 (65%)
Query: 660 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLF 719
           +ISDI+K+ + +M   ++  K  + K+RTGRA+  +LD I V+Y+   T L ++A++T+ 
Sbjct: 1   MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE 60
Query: 720 NSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNI 779
           +S T+ I  F++ MS  ++KAI  ++LGLNP   G+ I V +PPLT+ERR+++ K+++  
Sbjct: 61  DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE 120
Query: 780 TEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 839
            E+ ++++R + RD+N+           S D++ R+Q D+QKLTD  I +I   L +KE 
Sbjct: 121 AEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA 180
Query: 840 EIL 842
           E++
Sbjct: 181 ELM 183

>pdb|4A7W|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter Pylori Length = 240

Iteration: 1
 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 98/161 (60%)
Query: 485 IDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGK 544
           I R++ DYMGMLAT+IN++A+ + L   G+ + V SAI I++  ESYI   AI++LE+G+
Sbjct: 70  IRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGR 129
Query: 545 VVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXXVDGIYNSDPNKCLSAIIYKKITFD 604
           VVIF  G GNPFFTTD                    VDGIY+ DPNK   A     ++++
Sbjct: 130 VVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYN 189
Query: 605 EVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIE 645
           + +   +E+MD TA S  +D KLPI V ++ K G L +VI+
Sbjct: 190 DALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIK 230

>pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus Length = 185

Iteration: 1
 Score =  132 bits (333), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 66/184 (35%), Positives = 120/184 (65%)
Query: 659 MIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITL 718
           M + ++   T+  M  ++++L+ NL  +RTGRAN  +L +++V+Y+     L +IA +T 
Sbjct: 1   MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTA 60
Query: 719 FNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKN 778
            +  T+ +Q +++     I+KAI +++LGLNP+ +G+ +Y++IPPLT+ERR+++V+ ++ 
Sbjct: 61  PDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQ 120
Query: 779 ITEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKE 838
             EE +++IR IRR++ +           S D   RA+ +IQK+TD+FI + +QL   KE
Sbjct: 121 YAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKE 180
Query: 839 KEIL 842
           +EIL
Sbjct: 181 QEIL 184

>pdb|4GFQ|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of Ribosome Recycling Factor (Frr) From Bacillus Anthracis Length = 209

Iteration: 1
 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 110/179 (61%)
Query: 666 KNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTIS 725
           K + +KM   +      L  VR GRA+  +LD +QV Y+   T ++++ANIT+  +  + 
Sbjct: 31  KFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLV 90
Query: 726 IQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKI 785
           IQP++K     I+KAI +A+LGLNP+  G +I ++ P LT+ERR ++VK++K   EE K+
Sbjct: 91  IQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKV 150
Query: 786 SIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILTL 844
           ++R +RRD N+           + D+      DIQK TDK+I +++++  NKEKEI+ +
Sbjct: 151 AVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV 209

>pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus Anthracis (Ba1797) Length = 255

Iteration: 1
 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 107/191 (56%), Gaps = 2/191 (1%)
Query: 465 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDIL-NKSGIISHVMSAIS 523
           ++IVIGGGNI RG   +   IDR  AD +G L TIINSL L  +L +K+     VM++I 
Sbjct: 54  VSIVIGGGNIFRGHLAEEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIP 113
Query: 524 IEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXX-XXXXXXVD 582
                E YI L A+ +L+ G +VIF GG G PF TTD                     VD
Sbjct: 114 FNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVD 173
Query: 583 GIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKR 642
           G++ SDP    SA +Y+K+ +++V+ + +++MD  A    RD  LP  VF+  + G ++R
Sbjct: 174 GVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRR 233
Query: 643 VIEGKNEGTLV 653
           +  G++ GTL+
Sbjct: 234 ICLGEHVGTLI 244

>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum Length = 256

Iteration: 1
 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 113/190 (59%), Gaps = 1/190 (0%)
Query: 465 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 524
           ++IV+GGGNI RG   K  ++DR+ AD MGM+ATIIN LAL + LN   + + V+SAI  
Sbjct: 65  VSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIKC 124
Query: 525 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXX-XXXVDG 583
           +K +      N  K +E+ +V+IF  G G P+FTTD                     VDG
Sbjct: 125 DKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGVDG 184
Query: 584 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRV 643
           +Y+SDP    +A  Y+ ITF+  +++ L++MD+TA + C++  + + VF+I K  A+  V
Sbjct: 185 VYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDV 244
Query: 644 IEGKNEGTLV 653
           +E KN+ T+V
Sbjct: 245 LEKKNKYTIV 254

>pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase (Ump-Kinase) From Streptococcus Pyogenes Length = 252

Iteration: 1
 Score =  125 bits (315), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 69/190 (36%), Positives = 109/190 (57%), Gaps = 1/190 (0%)
Query: 465 LAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISI 524
           +A+VIGGGN+ RG        DR  ADY G L T+ N+L   D L   G+ + V +AI  
Sbjct: 49  IALVIGGGNLWRGEPAADAGXDRVQADYTGXLGTVXNALVXADSLQHYGVDTRVQTAIPX 108
Query: 525 EKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDXXXXXXXXXXXXXXXXXXXX-VDG 583
           +   E YI   A+++LE+ ++V+F  GIG+P+F+TD                     VDG
Sbjct: 109 QNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILXAKNGVDG 168
Query: 584 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRV 643
           +YN+DP K  +A+ + ++T  EVI + L+I D+TA +   D  + + VF+  ++G ++RV
Sbjct: 169 VYNADPKKDANAVKFDELTHGEVIKRGLKIXDATASTLSXDNDIDLVVFNXNEAGNIQRV 228
Query: 644 IEGKNEGTLV 653
           + G++ GT V
Sbjct: 229 VFGEHIGTTV 238

>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678

Iteration: 1
 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 119/223 (53%), Gaps = 27/223 (12%)
Query: 219 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNA 274
           A + A  V ELR +T A +M+CKKAL EANG +  A E +R    IK  KK  N+    A
Sbjct: 2   AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNV----A 57
Query: 275 KDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKK-----IAKLITENTPXXXXXXX 329
            DGVI   I    G ++E+NC+TDFVAK+  F  F+ K     +A  IT+          
Sbjct: 58  ADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITD---------- 107
Query: 330 XXXXXXXXXTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNE 389
                      +E+   L+++IGENI IRR    +  + L SY H  +IGV+V   G +E
Sbjct: 108 ---VEVLKAQFEEERVALVAKIGENINIRRVAALE-GDVLGSYQHGARIGVLVAAKGADE 163
Query: 390 SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 432
             VK +AMH+AA KP  +  + +  +++EKEY + +  A Q G
Sbjct: 164 ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSG 206

>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289

Iteration: 1
 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 119/223 (53%), Gaps = 27/223 (12%)
Query: 219 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNA 274
           A + A  V ELR +T A +M+CKKAL EANG +  A E +R    IK  KK  N+    A
Sbjct: 2   AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNV----A 57
Query: 275 KDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKK-----IAKLITENTPXXXXXXX 329
            DGVI   I    G ++E+NC+TDFVAK+  F  F+ K     +A  IT+          
Sbjct: 58  ADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITD---------- 107
Query: 330 XXXXXXXXXTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNE 389
                      +E+   L+++IGENI IRR    +  + L SY H  +IGV+V   G +E
Sbjct: 108 ---VEVLKAQFEEERVALVAKIGENINIRRVAALE-GDVLGSYQHGARIGVLVAAKGADE 163
Query: 390 SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 432
             VK +AMH+AA KP  +  + +  +++EKEY + +  A Q G
Sbjct: 164 ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSG 206

>pdb|1EFU|B Chain B, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 282

Iteration: 1
 Score =  120 bits (300), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 119/223 (53%), Gaps = 27/223 (12%)
Query: 219 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNA 274
           A + A  V ELR +T A +M+CKKAL EANG +  A E +R    IK  KK  N+    A
Sbjct: 1   AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNV----A 56
Query: 275 KDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKK-----IAKLITENTPXXXXXXX 329
            DGVI   I    G ++E+NC+TDFVAK+  F  F+ K     +A  IT+          
Sbjct: 57  ADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITD---------- 106
Query: 330 XXXXXXXXXTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNE 389
                      +E+   L+++IGENI IRR    +  + L SY H  +IGV+V   G +E
Sbjct: 107 ---VEVLKAQFEEERVALVAKIGENINIRRVAALE-GDVLGSYQHGARIGVLVAAKGADE 162
Query: 390 SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 432
             VK +AMH+AA KP  +  + +  +++EKEY + +  A Q G
Sbjct: 163 ELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSG 205

>pdb|1WQF|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Mycobacterium Tuberculosis Length = 185

Iteration: 1
 Score =  118 bits (295), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 105/176 (59%)
Query: 667 NTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISI 726
           + ++KM   + + +++L  +RTGRAN GM   I + Y+   T + ++A+I +  +  + I
Sbjct: 8   DAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVI 67
Query: 727 QPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKIS 786
           +P+E      I+ AI  ++LG+NPT  G +I V++P LT+ERR E+VK  K+  EE K+S
Sbjct: 68  KPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVS 127
Query: 787 IRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 842
           +R IRR + E             D   RA+ D+ K T +++ +I++L+ +KE E+L
Sbjct: 128 VRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELL 183

>pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Recycling Factor, Rrf Length = 185

Iteration: 1
 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 113/177 (63%)
Query: 666 KNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTIS 725
           K  K+KM  T++ +++ L+K+RTG+ +  +L+ I+V Y+   T + ++A I++    T+ 
Sbjct: 7   KEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLV 66
Query: 726 IQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKI 785
           I+P++K + S+I+KAIN ++LGLNP   GN+I +  P  T E+RE+ VK  K I EE KI
Sbjct: 67  IKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKI 126
Query: 786 SIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 842
           +IR IRR+  +             D+  R + +IQKLTD+FI +++++   K++EI+
Sbjct: 127 AIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIM 183

>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor Length = 184

Iteration: 1
 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 115/184 (62%), Gaps = 4/184 (2%)
Query: 661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 720
           + DI K  ++ M   ++  K  +  +RT RA+  +++ I+V+Y+     + ++  I++  
Sbjct: 5   LEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPE 64
Query: 721 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 780
            + I IQ +++     I+KAI E  L LNPT+QGN+I V++PPLT+ERR E+V+L+  IT
Sbjct: 65  HNQIVIQVWDQNAVPAIEKAIRE-ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKIT 123
Query: 781 EETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 840
           EE ++ +R +RR++ E           S D + RA   +QKLTDK+I EIN+L+  KEKE
Sbjct: 124 EEARVRVRNVRREAKE---MIEELEGISEDEKKRALERLQKLTDKYIDEINKLMEAKEKE 180
Query: 841 ILTL 844
           I+++
Sbjct: 181 IMSV 184

>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 196

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 226 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYI-- 283
           + +LR  T A +M+ K+AL +A     KA ++LR +   K    ++R A++G+I  YI  
Sbjct: 7   IKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHH 66
Query: 284 SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP 322
           +++VG LVE+NCETDFVA+N  F   +K +A  I    P
Sbjct: 67  NQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNP 105

>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 196

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 15/80 (18%)
Query: 374 HDNKIGVIVEYNGDN---------ESAVKDVAMHIAAMKPIALSSDQIPKKIIEKE---Y 421
           H+ ++GV+VE N +          ++  KD+AMHIA M P  +S+++IP + +EKE   Y
Sbjct: 66  HNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIY 125
Query: 422 SLAVL---KAQQLGEALMKG 438
             A L   K QQ+ E + +G
Sbjct: 126 IQAALNEGKPQQIAEKIAEG 145

>pdb|1Y69|8 Chain 8, Rrf Domain I In Complex With The 50s Ribosomal Subunit From Deinococcus Radiodurans Length = 113

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 50/78 (64%)
Query: 765 TKERREEIVKLIKNITEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTD 824
           T+ERR+++ K+++   E+ ++++R +RRD+N+           S D++ R+Q D+QKLTD
Sbjct: 34  TEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTD 93
Query: 825 KFILEINQLLINKEKEIL 842
             I +I   L +KE E++
Sbjct: 94  AAIKKIEAALADKEAELM 111

>pdb|1XB2|B Chain B, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 291

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 229 LRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGK----KILNISNRNAKDGVIAIYIS 284
           LR KT    + CKKAL    G L +AE  L  +  K    K   +  R  K+G+I +   
Sbjct: 11  LRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQE 70
Query: 285 EKVGSLVEINCETDFVAKNNEFIKFSKKIA 314
                LVE+NCETDFV++N +F +  +++A
Sbjct: 71  GDTTVLVEVNCETDFVSRNLKFQQLVQQVA 100

>pdb|1VI6|A Chain A, Crystal Structure Of Ribosomal Protein S2p Length = 208

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 57/242 (23%)
Query: 7   EMLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 65
           + L AGVH G Q +     M  +IF  R + ++++++ K       A +++ +   SK  
Sbjct: 15  DYLAAGVHIGTQIK--TGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRYEPSK-- 70
Query: 66  LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 125
           +L V  ++ A   +   +   G  +I  R++ G LTN                       
Sbjct: 71  ILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTN----------------------- 107
Query: 126 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 185
                   L  YR+                 P+ +F+ D    K AVSEA  + IP++ +
Sbjct: 108 ------PMLSEYRE-----------------PEVVFVNDPAIDKQAVSEATAVGIPVVAL 144
Query: 186 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALI 245
            D+N+S   ++ VIP N+   +++A+        +L A+ + ++R +     +E  +A +
Sbjct: 145 CDSNNSSADVDLVIPTNNKGRRALAIVY------WLLAREIAKIRGQDFTYSIEDFEAEL 198
Query: 246 EA 247
           E 
Sbjct: 199 EG 200

>pdb|1VI5|A Chain A, Crystal Structure Of Ribosomal Protein S2p Length = 208

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 57/242 (23%)
Query: 7   EMLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGT 65
           + L AGVH G Q +  + K   +IF  R + ++++++ K       A +++ +   SK  
Sbjct: 15  DYLAAGVHIGTQIKTGDXK--KFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRYEPSK-- 70
Query: 66  LLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSI 125
           +L V  ++ A   +   +   G  +I  R++ G LTN                       
Sbjct: 71  ILLVAARQYAHKPVQXFSKVVGSDYIVGRFIPGTLTN----------------------- 107
Query: 126 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 185
                   L  YR+                 P+ +F+ D    K AVSEA  + IP++ +
Sbjct: 108 ------PXLSEYRE-----------------PEVVFVNDPAIDKQAVSEATAVGIPVVAL 144
Query: 186 VDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALI 245
            D+N+S   ++ VIP N+   +++A+        +L A+ + ++R +     +E  +A +
Sbjct: 145 CDSNNSSADVDLVIPTNNKGRRALAIVY------WLLAREIAKIRGQDFTYSIEDFEAEL 198
Query: 246 EA 247
           E 
Sbjct: 199 EG 200

>pdb|1TFE|A Chain A, Dimerization Domain Of Ef-Ts From T. Thermophilus Length = 145

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 274 AKDGVIAIYI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP 322
           A++G+I  YI  +++VG LVE+NCETDFVA+N  F   +K +A  I    P
Sbjct: 1   AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNP 51

>pdb|1TFE|A Chain A, Dimerization Domain Of Ef-Ts From T. Thermophilus Length = 145

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 15/80 (18%)
Query: 374 HDNKIGVIVEYNGDN---------ESAVKDVAMHIAAMKPIALSSDQIPKKIIEKE---Y 421
           H+ ++GV+VE N +          ++  KD+AMHIA M P  +S+++IP + +EKE   Y
Sbjct: 12  HNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIY 71
Query: 422 SLAVL---KAQQLGEALMKG 438
             A L   K QQ+ E + +G
Sbjct: 72  IQAALNEGKPQQIAEKIAEG 91

>pdb|3LF9|A Chain A, Crystal Structure Of Hiv Epitope-Scaffold 4e10_d0_1is1a_001_c Length = 121

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 48/78 (61%)
Query: 765 TKERREEIVKLIKNITEETKISIRKIRRDSNEXXXXXXXXXXXSVDNEYRAQYDIQKLTD 824
           T+ERR+++VK+++   E  ++++R I RD+             +  +  +A ++IQKLTD
Sbjct: 34  TEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTD 93
Query: 825 KFILEINQLLINKEKEIL 842
             + +I+++L  KEKE++
Sbjct: 94  VAVKKIDEVLAAKEKELM 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	844
2vqe_B	256	30S ribosomal protein S2; tRNA-binding, rRNA-bindi	1e-125
3bbn_B	231	Ribosomal protein S2; small ribosomal subunit, spi	1e-124
3r8n_B	218	30S ribosomal protein S2; protein biosynthesis, RN	1e-123
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	1e-74
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	1e-74
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	3e-73
3nwy_A	281	Uridylate kinase; allosterically activated form, A	3e-73
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	5e-73
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	1e-72
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	8e-72
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	1e-71
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	9e-70
1eh1_A	185	Ribosome recycling factor; translation, hinge vari	3e-69
1is1_A	185	Ribosome recycling factor; translation; 2.20A {Vib	1e-68
4gfq_A	209	Ribosome-recycling factor; structural genomics, ni	1e-68
1wqg_A	185	Ribosome recycling factor; translation factor, tri	2e-68
1ise_A	185	Ribosome recycling factor; translation; 2.20A {Esc	2e-68
1dd5_A	185	Ribosome recycling factor; three-helix bundle, bet	3e-68
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	2e-67
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	2e-67
2ij9_A	219	Uridylate kinase; structural genomics, protein str	3e-62
1ge9_A	184	Ribosome recycling factor; three-helix bundle; NMR	4e-62
1xb2_B	291	EF-TS, elongation factor TS, mitochondrial, EF-TSM	4e-60
1vi6_A	208	30S ribosomal protein S2P; structural genomics, ri	4e-58
2xzm_B	241	RPS0E; ribosome, translation; 3.93A {Tetrahymena t	1e-55
3u5c_A	252	40S ribosomal protein S0-A; translation, ribosome,	2e-52
2zkq_b	295	40S ribosomal protein SA; protein-RNA complex, 40S	4e-51
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	7e-49
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	8e-48
3bch_A	253	40S ribosomal protein SA; laminin receptor, P40 ri	1e-46
3lhp_S	123	4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immun	5e-41
3lf9_A	121	4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immu	5e-37
1aip_C	196	EF-TS, elongation factor TS; nucleotide exchange,	4e-28
1aip_C	196	EF-TS, elongation factor TS; nucleotide exchange,	5e-18
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	2e-26
3k4o_A	266	Isopentenyl phosphate kinase; small molecule kinas	1e-24
1wih_A	84	Mitochondrial ribosome recycling factor; structura	2e-23
1tfe_A	145	Elongation factor TS; 1.70A {Thermus thermophilus}	8e-14
1tfe_A	145	Elongation factor TS; 1.70A {Thermus thermophilus}	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	3e-11
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	1e-09
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	5e-08
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	3e-07
3d40_A	286	FOMA protein; fosfomycin, antibiotic resistance, k	5e-07
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	3e-06
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	5e-06
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	4e-05
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	8e-05

>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Length = 256

 Score =  375 bits (965), Expect = e-125
 Identities = 105/239 (43%), Positives = 155/239 (64%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
           + IT++E+LEAGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L 
Sbjct: 3   VEITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLA 62

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
              GT+LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI   + RL+E++   
Sbjct: 63  MRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALF 122

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
            +  I +  KKE +    +  +L + + G + +  +PDAIF++D      AV EA KL I
Sbjct: 123 ASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFI 182

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIME 239
           P+I + DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+      S + A + E
Sbjct: 183 PVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQE 241

>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 231

 Score =  372 bits (958), Expect = e-124
 Identities = 85/224 (37%), Positives = 129/224 (57%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLG 60
            +I + EM+EAGVHFGH TR WNP+MS YI      IHIINL +T     +A   ++   
Sbjct: 2   WNINLEEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDAS 61

Query: 61  FSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFI 120
                 L VGTK +A   +A  A+RA   +++++WLGG+LTN+ T +T + + +++ +  
Sbjct: 62  SRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQ 121

Query: 121 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI 180
           T G + +L K++A +  R+   L   +GGIK M  +PD + I+D      A+ E I L I
Sbjct: 122 TAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGI 181

Query: 181 PIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           P I ++DTN +PD  +  IP NDD+  SI L    +V A  + +
Sbjct: 182 PTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGR 225

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247

 Score =  242 bits (620), Expect = 1e-74
 Identities = 103/224 (45%), Positives = 153/224 (68%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           GEAL   D   I+ +I+  +  EI E+V  G+E+++V+GGGN+ RG       ++R   D
Sbjct: 17  GEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGD 76

Query: 492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 551
           +MGMLAT++N LA+ D L ++ + + +MSA  +    ++Y    AIK L E +VVIF+ G
Sbjct: 77  HMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAG 136

Query: 552 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 611
            GNPFFTTD+TA LR  EI+A+++LKATKVDG+Y+ DP K   A +YK +++ EVI K+L
Sbjct: 137 TGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKEL 196

Query: 612 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 655
           ++MD +AF+  RD  +PIRVF++ K GAL++V+ G  EGT + E
Sbjct: 197 KVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICE 240

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243

 Score =  242 bits (620), Expect = 1e-74
 Identities = 111/222 (50%), Positives = 148/222 (66%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           GEALM    Y I+  +I  +  E+ E    G ++A+VIGGGNI RG       +DR T D
Sbjct: 18  GEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRVTGD 77

Query: 492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 551
           +MGMLAT+IN+LA+ D L K G    VMSAI I    E +I   AI++LE+G++ IFA G
Sbjct: 78  HMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAIRHLEKGRIAIFAAG 137

Query: 552 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 611
            GNPFFTTD+ AALRA EI A+++LKATKVDG+Y+ DP K   A+ Y  +T+DEVI + L
Sbjct: 138 TGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQGL 197

Query: 612 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
           E+MD+ AF+  RD  LP+R+F + + G L R++ G   GTLV
Sbjct: 198 EVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLV 239

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239

 Score =  239 bits (610), Expect = 3e-73
 Identities = 123/223 (55%), Positives = 166/223 (74%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           GE+LM  D + IN   I   + EI+E+V  G+++ IV+GGGNI RG+S +  ++DR+TAD
Sbjct: 16  GESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATAD 75

Query: 492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 551
           YMGM+AT++N+LAL D     GI + V SA+S+++  E+Y    AI+YLEEGKVVIFA G
Sbjct: 76  YMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAG 135

Query: 552 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 611
            GNPFFTTDT AALR AE+  +++LKAT VDG+Y +DP K  SA  Y+ ITFDE + K L
Sbjct: 136 TGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNL 195

Query: 612 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654
           ++MD+TAF+ CR++KL I VF I K G+LKRVI G++EGTLV+
Sbjct: 196 KVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 238

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281

 Score =  240 bits (613), Expect = 3e-73
 Identities = 92/222 (41%), Positives = 146/222 (65%), Gaps = 1/222 (0%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           GE    G    ++  ++  +  +I+++V  G+++A+VIGGGN  RG   +   ++R+ +D
Sbjct: 59  GEMFG-GGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSD 117

Query: 492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 551
           YMGML T++NSLAL D L K GI++ V +AI++ +  E Y+PL A+++LE+G+VVIF  G
Sbjct: 118 YMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAG 177

Query: 552 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 611
           +G P+F+TDTTAA RA EI A+++L A  VDG++  DP     A +   ++  EV+ + L
Sbjct: 178 MGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGL 237

Query: 612 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
            + D+TAFS C D  +PI VF+++  G + R + G+  GTLV
Sbjct: 238 RVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLV 279

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256

 Score =  238 bits (609), Expect = 5e-73
 Identities = 96/258 (37%), Positives = 153/258 (59%), Gaps = 6/258 (2%)

Query: 400 AAMKPIALSSDQIPKKIIEKEYSLAVLKAQQL-GEALMKGDAYNINSSIIKNIISEISEI 458
           ++      SS  +P+          V+K   + G  L + D+  I+   I ++  +I +I
Sbjct: 3   SSHHHHHHSSGLVPRGSHMMRKQRIVIK---ISGACLKQNDSSIIDFIKINDLAEQIEKI 59

Query: 459 VSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHV 518
               I ++IV+GGGNI RG   K  ++DR+ AD MGM+ATIIN LAL + LN   + + V
Sbjct: 60  SKKYI-VSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIV 118

Query: 519 MSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKA 578
           +SAI  +K +      N  K +E+ +V+IF  G G P+FTTD+ AA+RAAE ++ IIL  
Sbjct: 119 LSAIKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMG 178

Query: 579 TK-VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKS 637
              VDG+Y+SDP    +A  Y+ ITF+  +++ L++MD+TA + C++  + + VF+I K 
Sbjct: 179 KNGVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKP 238

Query: 638 GALKRVIEGKNEGTLVYE 655
            A+  V+E KN+ T+V +
Sbjct: 239 NAIVDVLEKKNKYTIVSK 256

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240

 Score =  237 bits (605), Expect = 1e-72
 Identities = 104/224 (46%), Positives = 150/224 (66%), Gaps = 2/224 (0%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS-NKIQNIDRSTA 490
           GEAL   + + I+  ++ +I  EI  +V   IE+ IVIGGGNI RG+S  +   I R++ 
Sbjct: 16  GEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSG 75

Query: 491 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG 550
           DYMGMLAT+IN++A+ + L   G+ + V SAI I++  ESYI   AI++LE+G+VVIF  
Sbjct: 76  DYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGA 135

Query: 551 GIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 610
           G GNPFFTTDT A LRA EI +++I+KATKVDGIY+ DPNK   A     +++++ +   
Sbjct: 136 GTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGD 195

Query: 611 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEG-KNEGTLV 653
           +E+MD TA S  +D KLPI V ++ K G L +VI+  +   ++V
Sbjct: 196 IEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252

 Score =  235 bits (601), Expect = 8e-72
 Identities = 94/223 (42%), Positives = 148/223 (66%), Gaps = 1/223 (0%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           GEAL       I+   ++ I  EI+E+   G+++A+VIGGGN+ RG       +DR  AD
Sbjct: 16  GEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQAD 75

Query: 492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 551
           Y GML T++N+L + D L   G+ + V +AI ++   E YI   A+++LE+ ++V+F  G
Sbjct: 76  YTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAG 135

Query: 552 IGNPFFTTDTTAALRAAEIKAEIILKAT-KVDGIYNSDPNKCLSAIIYKKITFDEVISKK 610
           IG+P+F+TDTTAALRAAEI+A+ IL A   VDG+YN+DP K  +A+ + ++T  EVI + 
Sbjct: 136 IGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRG 195

Query: 611 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
           L+IMD+TA +   D  + + VF++ ++G ++RV+ G++ GT V
Sbjct: 196 LKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTV 238

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270

 Score =  235 bits (601), Expect = 1e-71
 Identities = 41/229 (17%), Positives = 87/229 (37%), Gaps = 13/229 (5%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRST 489
           G++++      +       ++ EI        +L I  G G   R + +      +    
Sbjct: 45  GQSVIDRGRAAVYP-----LVDEIVAARK-NHKLLIGTGAGTRARHLYSIAAGLGLPAGV 98

Query: 490 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 549
              +G      N+  L  +L K GI     + +S      + +       +   K+ +  
Sbjct: 99  LAQLGSSVADQNAAMLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAVVFSGMPPYKLWMRP 158

Query: 550 GGIGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS 608
              G  P + TD    L A +   + ++     DG+Y ++P     A    +I+ DE+ +
Sbjct: 159 AAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKA 218

Query: 609 KKLE--IMDSTAFSFCRDQK--LPIRVFSIIKSGALKRVIEGKNEGTLV 653
           K L   I++       +  +    ++V + +  G L R + G++ GT++
Sbjct: 219 KGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTII 267

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255

 Score =  229 bits (586), Expect = 9e-70
 Identities = 91/224 (40%), Positives = 134/224 (59%), Gaps = 2/224 (0%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           G AL      + NS  +++I +EI  IV  GIE++IVIGGGNI RG   +   IDR  AD
Sbjct: 21  GGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEAD 80

Query: 492 YMGMLATIINSLALFDILNK-SGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG 550
            +G L TIINSL L  +L   +     VM++I      E YI L A+ +L+ G +VIF G
Sbjct: 81  NIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGG 140

Query: 551 GIGNPFFTTDTTAALRAAEIKAEIILKATK-VDGIYNSDPNKCLSAIIYKKITFDEVISK 609
           G G PF TTD  +  RA E+ ++ IL A + VDG++ SDP    SA +Y+K+ +++V+ +
Sbjct: 141 GNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ 200

Query: 610 KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
            +++MD  A    RD  LP  VF+  + G ++R+  G++ GTL+
Sbjct: 201 NIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLI 244

>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G Length = 185

 Score =  225 bits (577), Expect = 3e-69
 Identities = 72/184 (39%), Positives = 126/184 (68%)

Query: 659 MIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITL 718
           M + ++   T+  M  ++++L+ NL  +RTGRAN  +L +++V+Y+     L +IA +T 
Sbjct: 1   MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTA 60

Query: 719 FNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKN 778
            +  T+ +Q +++     I+KAI +++LGLNP+ +G+ +Y++IPPLT+ERR+++V+ ++ 
Sbjct: 61  PDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQ 120

Query: 779 ITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKE 838
             EE +++IR IRR++ + LKKL K   LS D   RA+ +IQK+TD+FI + +QL   KE
Sbjct: 121 YAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKE 180

Query: 839 KEIL 842
           +EIL
Sbjct: 181 QEIL 184

>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y Length = 185

 Score =  224 bits (573), Expect = 1e-68
 Identities = 79/183 (43%), Positives = 132/183 (72%)

Query: 661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 720
           I++IKK+ +++M  +++ LK NL KVRTGRA+  +L  I V+Y+   T L ++AN+   +
Sbjct: 2   INEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAED 61

Query: 721 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 780
           + T++I  F+KE++  ++KAI  ++LGLNP   G II V +PPLT+ERR+++VK+++   
Sbjct: 62  ARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEA 121

Query: 781 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 840
           E  ++++R IRRD+N +LK LLK+K +S D + +AQ +IQKLTD  + +I+++L  KEKE
Sbjct: 122 EGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKE 181

Query: 841 ILT 843
           ++ 
Sbjct: 182 LME 184

>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis} Length = 209

 Score =  225 bits (575), Expect = 1e-68
 Identities = 73/190 (38%), Positives = 120/190 (63%), Gaps = 1/190 (0%)

Query: 654 YEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKI 713
           ++   M    + K + +KM   +      L  VR GRA+  +LD +QV Y+   T ++++
Sbjct: 20  FQSNAMG-QQVLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQL 78

Query: 714 ANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIV 773
           ANIT+  +  + IQP++K     I+KAI +A+LGLNP+  G +I ++ P LT+ERR ++V
Sbjct: 79  ANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLV 138

Query: 774 KLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQL 833
           K++K   EE K+++R +RRD N++LKKL K   ++ D+      DIQK TDK+I +++++
Sbjct: 139 KVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEI 198

Query: 834 LINKEKEILT 843
             NKEKEI+ 
Sbjct: 199 AKNKEKEIME 208

>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A Length = 185

 Score =  223 bits (572), Expect = 2e-68
 Identities = 64/183 (34%), Positives = 111/183 (60%)

Query: 661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 720
           I +   + ++KM   + + +++L  +RTGRAN GM   I + Y+   T + ++A+I +  
Sbjct: 2   IDEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPE 61

Query: 721 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 780
           +  + I+P+E      I+ AI  ++LG+NPT  G +I V++P LT+ERR E+VK  K+  
Sbjct: 62  ARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKG 121

Query: 781 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 840
           EE K+S+R IRR + E L ++ K      D   RA+ D+ K T +++ +I++L+ +KE E
Sbjct: 122 EEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGE 181

Query: 841 ILT 843
           +L 
Sbjct: 182 LLE 184

>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8 Length = 185

 Score =  223 bits (571), Expect = 2e-68
 Identities = 73/182 (40%), Positives = 126/182 (69%)

Query: 661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 720
           ISDI+K+ + +M   ++  K  + K+RTGRA+  +LD I V+Y+   T L ++A++T+ +
Sbjct: 2   ISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVED 61

Query: 721 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 780
           S T+ I  F++ MS  ++KAI  ++LGLNP   G+ I V +PPLT+ERR+++ K+++   
Sbjct: 62  SRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEA 121

Query: 781 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 840
           E+ ++++R + RD+N+ +K LLK+K +S D++ R+Q D+QKLTD  I +I   L +KE E
Sbjct: 122 EQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAE 181

Query: 841 IL 842
           ++
Sbjct: 182 LM 183

>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C Length = 185

 Score =  223 bits (570), Expect = 3e-68
 Identities = 68/182 (37%), Positives = 121/182 (66%)

Query: 661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 720
           ++   K  K+KM  T++ +++ L+K+RTG+ +  +L+ I+V Y+   T + ++A I++  
Sbjct: 2   VNPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISE 61

Query: 721 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 780
             T+ I+P++K + S+I+KAIN ++LGLNP   GN+I +  P  T E+RE+ VK  K I 
Sbjct: 62  ERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIV 121

Query: 781 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 840
           EE KI+IR IRR+  + +K+  K  ++  D+  R + +IQKLTD+FI +++++   K++E
Sbjct: 122 EEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEE 181

Query: 841 IL 842
           I+
Sbjct: 182 IM 183

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244

 Score =  223 bits (570), Expect = 2e-67
 Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 29/233 (12%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRST 489
           G  L+  +  N +   IK I  +++++     E+A+V+GGG + R      +  N   + 
Sbjct: 28  GSVLV-PE--NPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETF 83

Query: 490 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 549
            D++G+  T  N++ L   L +      V                 A K ++  K+ +  
Sbjct: 84  KDFIGIQITRANAMLLIAALREKAYPVVVED------------FWEAWKAVQLKKIPVMG 131

Query: 550 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-- 607
           G   +P  TTD  AAL A  +KA++++  T VDG+Y +DP K  +A   KK+  +E++  
Sbjct: 132 GT--HPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEI 189

Query: 608 -------SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
                  +    ++D  A        +   V     +  L RVI+G + GT +
Sbjct: 190 VGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 242

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226

 Score =  222 bits (567), Expect = 2e-67
 Identities = 45/234 (19%), Positives = 87/234 (37%), Gaps = 31/234 (13%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRST 489
           G+   + +        +  +   I E+   G  + IV GGG+  R      +   I  + 
Sbjct: 9   GKFFDEDNV-----DNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAY 63

Query: 490 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 549
            D +G+ A+ +N+  +   L     +                     I+    GKVV+  
Sbjct: 64  LDLLGIWASRLNAYLVMFSLQDLAYMHVP------------QSLEEFIQDWSHGKVVVTG 111

Query: 550 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE---- 605
           G    P  +T   AAL A    ++ ++ AT VDG+Y  DP       +   +T  +    
Sbjct: 112 GF--QPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKI 169

Query: 606 ------VISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
                 V +   E++D  A       K+ + V +  K   +  +++G+   +++
Sbjct: 170 LEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSII 223

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219

 Score =  208 bits (531), Expect = 3e-62
 Identities = 50/233 (21%), Positives = 96/233 (41%), Gaps = 34/233 (14%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRST 489
           G  L   ++       I+     I  +     ++ +V+GGG + R      +      + 
Sbjct: 9   GSVLS-NES-----EKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARELGASETF 61

Query: 490 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 549
            DY+G+ AT +N++ L   +  +                     + A +  +  +VV+  
Sbjct: 62  CDYIGIAATRLNAMLLISAIPSAAK-------------KVPVDFMEAEELSKLYRVVVMG 108

Query: 550 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISK 609
           G    P  TTD TAAL A  IKA++ + AT VDG+Y++DP    SA+ Y +++  +++  
Sbjct: 109 GT--FPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEI 166

Query: 610 ---------KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
                       ++D  A       K+   V        + + ++G+  GT++
Sbjct: 167 VSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL-GTPENIMKAVKGEAVGTVI 218

>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1 Length = 184

 Score =  206 bits (527), Expect = 4e-62
 Identities = 69/183 (37%), Positives = 118/183 (64%), Gaps = 4/183 (2%)

Query: 661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 720
           + DI K  ++ M   ++  K  +  +RT RA+  +++ I+V+Y+     + ++  I++  
Sbjct: 5   LEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPE 64

Query: 721 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 780
            + I IQ +++     I+KAI    L LNPT+QGN+I V++PPLT+ERR E+V+L+  IT
Sbjct: 65  HNQIVIQVWDQNAVPAIEKAIR-EELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKIT 123

Query: 781 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 840
           EE ++ +R +RR++ E +++L     +S D + RA   +QKLTDK+I EIN+L+  KEKE
Sbjct: 124 EEARVRVRNVRREAKEMIEELEG---ISEDEKKRALERLQKLTDKYIDEINKLMEAKEKE 180

Query: 841 ILT 843
           I++
Sbjct: 181 IMS 183

>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Length = 291

 Score =  204 bits (522), Expect = 4e-60
 Identities = 52/235 (22%), Positives = 93/235 (39%), Gaps = 37/235 (15%)

Query: 222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILN----ISNRNAKDG 277
             + + +LR KT    + CKKAL    G L +AE  L  +  K+  +    +  R  K+G
Sbjct: 4   SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEG 63

Query: 278 VIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLK----- 332
           +I +        LVE+NCETDFV++N +F +  +++A     +     DQL+        
Sbjct: 64  LIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLN 123

Query: 333 ---------IKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN--NLISYLHDN----- 376
                          ++ ++    I ++GEN+ ++R    K      + SY+H       
Sbjct: 124 SSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVPAGFYVGSYVHGAMHSPS 183

Query: 377 -------KIGVIVEYNGDNESAV-----KDVAMHIAAMKPIALSSDQIPKKIIEK 419
                  K G +V        A      + +  H+  M P+++ S         +
Sbjct: 184 LHNLVLGKYGALVICETSELKANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEAE 238

>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Length = 208

 Score =  196 bits (500), Expect = 4e-58
 Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 51/223 (22%)

Query: 3   ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGF 61
           +   + L AGVH G Q +  +  M  +IF  R + ++++++ K       A +++ +  +
Sbjct: 11  VPPDDYLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSR--Y 66

Query: 62  SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 121
               +L V  ++ A   +   +   G  +I  R++ G LTN                   
Sbjct: 67  EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNP------------------ 108

Query: 122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181
                                       + +    P+ +F+ D    K AVSEA  + IP
Sbjct: 109 ----------------------------MLSEYREPEVVFVNDPAIDKQAVSEATAVGIP 140

Query: 182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           ++ + D+N+S   ++ VIP N+   +++A+    +       +
Sbjct: 141 VVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIR 183

>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B Length = 241

 Score =  190 bits (485), Expect = 1e-55
 Identities = 50/238 (21%), Positives = 80/238 (33%), Gaps = 51/238 (21%)

Query: 3   ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGF 61
             I+ +L +  H    T   N +M  YI     N IH IN+E+T    + A R I  +  
Sbjct: 8   DDIKRLLASNCH--QATINLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAAVQH 65

Query: 62  SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 121
            +  ++        R  I              RW  G LTN++T+K              
Sbjct: 66  PEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLK-------------- 111

Query: 122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181
                                              P  + + D      A+ EA  +NIP
Sbjct: 112 --------------------------------YEEPRVLIVTDPRSDFQAIKEASYVNIP 139

Query: 182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIME 239
           +I + D++     ++ VIP N+ S +SI++    I       +  GEL       +M 
Sbjct: 140 VIALCDSDSPLAYVDVVIPCNNRSTESISMIYWMIAREVKILR--GELSKDEEWEVMV 195

>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B Length = 252

 Score =  182 bits (464), Expect = 2e-52
 Identities = 40/225 (17%), Positives = 72/225 (32%), Gaps = 50/225 (22%)

Query: 1   MSITIREMLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQL 59
                + +L A  H G +          Y+F  R + +H+IN+ KT      A R I  +
Sbjct: 10  TPEDAQLLLAANTHLGARN--VQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAI 67

Query: 60  GFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLF 119
             +   ++ + ++   +  +   A   G   I  R+  G  TN+ T              
Sbjct: 68  P-NPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITR------------- 113

Query: 120 ITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLN 179
                                                P  + + D      A+ EA  +N
Sbjct: 114 ---------------------------------SFKEPRLVIVTDPRSDAQAIKEASYVN 140

Query: 180 IPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           IP+I + D +   + ++  IP N+    SI L    +    L  +
Sbjct: 141 IPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLR 185

>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 295

 Score =  180 bits (457), Expect = 4e-51
 Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 52/238 (21%)

Query: 3   ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGF 61
             + + L AG H G      + +M  YI+  + + I+IINL++T      A R I  +  
Sbjct: 13  EDVLKFLAAGTHLGGTN--LDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIE- 69

Query: 62  SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 121
           +   +  + ++   +  +   A   G   I  R+  G  TN                   
Sbjct: 70  NPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTN------------------- 110

Query: 122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181
                                       I+     P  + + D       ++EA  +N+P
Sbjct: 111 ---------------------------QIQAAFREPRLLVVTDPRADHQPLTEASYVNLP 143

Query: 182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIME 239
            I + +T+     ++  IP N+  A S+ L    +    L  +  G +  +    +M 
Sbjct: 144 TIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMR--GTISREHPWEVMP 199

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276

 Score =  173 bits (439), Expect = 7e-49
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 34/236 (14%)

Query: 438 GDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRSTADYMGM 495
           G   +  +  I  ++ E+ +++     L I+ G G   R + +      +   +   +  
Sbjct: 48  GRVMDRGADAILPLVEELRKLLP-EHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAA 106

Query: 496 LATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAG----- 550
                N   L  +L   G+                 +      +L   + V+ +      
Sbjct: 107 SEAGQNGHILAAMLASEGV----------SYVEHPTVADQLAIHLSATRAVVGSAFPPYH 156

Query: 551 -----GIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCL--SAIIYKKITF 603
                G   P    DT A L A    A  +     VDGIY +DPN      A    + + 
Sbjct: 157 HHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSA 216

Query: 604 DEVISKK------LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
            ++   +        ++D  A +   +    ++V + +  G L   + G++ GTL+
Sbjct: 217 TDLAKSEGPLPVDRALLDVMATARHIE---RVQVVNGLVPGRLTAALRGEHVGTLI 269

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score =  171 bits (434), Expect = 8e-48
 Identities = 47/265 (17%), Positives = 81/265 (30%), Gaps = 62/265 (23%)

Query: 3   ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGF 61
             I+ ML A VH G +    + +M  Y++  R + I+IINL KT    + A R I  +  
Sbjct: 17  QDIQMMLAADVHLGTKN--CDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIE- 73

Query: 62  SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 121
           +   ++    +   +  +   A   G   I  R   G  TN                   
Sbjct: 74  NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTN------------------- 114

Query: 122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181
                                       ++     P  + + D       + E+   NIP
Sbjct: 115 ---------------------------QLQTSFSEPRLLILTDPRTDHQPIKESALGNIP 147

Query: 182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIM--- 238
            I   DT+     ++  IP N+   +SI      +    L  +  G +       +M   
Sbjct: 148 TIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMR--GTILPGHKWDVMVDL 205

Query: 239 -------ECKKALIEANGKLSKAEE 256
                  E K+   E    ++    
Sbjct: 206 FFYRDPEEAKEQEEEEAALVAPDYG 230

>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Length = 253

 Score =  166 bits (421), Expect = 1e-46
 Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 50/223 (22%)

Query: 3   ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGF 61
             + + L AG H G      + +M  YI+  + + I+IINL++T      A R I  +  
Sbjct: 46  EDVLKFLAAGTHLGGTN--LDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIE- 102

Query: 62  SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 121
           +   +  + ++   +  +   A   G   I  R+  G  TN                   
Sbjct: 103 NPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQ------------------ 144

Query: 122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181
                                       I+     P  + + D       ++EA  +N+P
Sbjct: 145 ----------------------------IQAAFREPRLLVVTDPRADHQPLTEASYVNLP 176

Query: 182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
            I + +T+     ++  IP N+  A S+ L    +    L  +
Sbjct: 177 TIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMR 219

>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8 Length = 123

 Score =  145 bits (368), Expect = 5e-41
 Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 4/121 (3%)

Query: 722 HTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITE 781
           H  SI    K+    + KA+      L+       +    P  T+ER ++ +K+++   E
Sbjct: 5   HHGSISDIRKDAEVRMDKAVEAFKNKLDKF--KAAVRKVFP--TEERIKDWLKIVRGEAE 60

Query: 782 ETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 841
           + ++++R + RD+N+    L K+K ++  +  ++ +D+QKLTD  I +I   L + E  +
Sbjct: 61  QARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKKIEAALADMEAWL 120

Query: 842 L 842
            
Sbjct: 121 T 121

>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene} Length = 121

 Score =  134 bits (339), Expect = 5e-37
 Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 7/118 (5%)

Query: 726 IQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKI 785
           I   +K+    + K++      L+    G          T+ERR+++VK+++   E  ++
Sbjct: 2   INEIKKDAQERMDKSVEALKNNLSKVRTGG-------GGTEERRKDLVKIVRGEAEGGRV 54

Query: 786 SIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEILT 843
           ++R I RD+  +L  L K+K ++  +  +A ++IQKLTD  + +I+++L  KEKE++ 
Sbjct: 55  AVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAVKKIDEVLAAKEKELME 112

>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Length = 196

 Score =  111 bits (279), Expect = 4e-28
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 8/166 (4%)

Query: 223 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIY 282
            + + +LR  T A +M+ K+AL +A     KA ++LR +   K    ++R A++G+I  Y
Sbjct: 4   MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHY 63

Query: 283 ISE--KVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP--INLDQLNNLKIKN--N 336
           I    +VG LVE+NCETDFVA+N  F   +K +A  I    P  ++ +++   +++    
Sbjct: 64  IHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQ 123

Query: 337 LLTVDEKCKELISRIGENIKIRRFKLFKTNNNLIS--YLHDNKIGV 380
           +       +    +I E I   R K +     L+   ++ D+K+ V
Sbjct: 124 IYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKV 169

>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Length = 196

 Score = 82.1 bits (203), Expect = 5e-18
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 342 EKCKELISRIGENIKIRRFKLFKTNNNLISYLH-DNKIGVIVEYNGDNESA--------- 391
           EK  +L+   G     ++         +  Y+H + ++GV+VE N + +           
Sbjct: 33  EKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNL 92

Query: 392 VKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLG 432
            KD+AMHIA M P  +S+++IP + +EKE  + +  A   G
Sbjct: 93  AKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEG 133

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289

 Score =  115 bits (289), Expect = 2e-26
 Identities = 82/219 (37%), Positives = 120/219 (54%), Gaps = 17/219 (7%)

Query: 219 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR----IKLGKKILNISNRNA 274
           A + A  V ELR +T A +M+CKKAL EANG +  A E +R    IK  KK  N+    A
Sbjct: 2   AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNV----A 57

Query: 275 KDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIK 334
            DGVI   I    G ++E+NC+TDFVAK+  F  F+ K+          +++ L      
Sbjct: 58  ADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLK----- 112

Query: 335 NNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVIVEYNGDNESAVKD 394
                 +E+   L+++IGENI IRR    +  + L SY H  +IGV+V   G +E  VK 
Sbjct: 113 ---AQFEEERVALVAKIGENINIRRVAALE-GDVLGSYQHGARIGVLVAAKGADEELVKH 168

Query: 395 VAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGE 433
           +AMH+AA KP  +  + +  +++EKEY + +  A Q G+
Sbjct: 169 IAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGK 207

>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Length = 266

 Score =  103 bits (258), Expect = 1e-24
 Identities = 48/250 (19%), Positives = 88/250 (35%), Gaps = 30/250 (12%)

Query: 432 GEALM-KGDAYNINSSIIKNIISEISEIVSC------GIELAIVIGGGNICRGISNKIQN 484
           G  L  K   Y+I    ++ I  EI   +         I+L +V GGG     ++ K   
Sbjct: 15  GSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLK 74

Query: 485 IDRSTADYMGMLATI---------INSLALFDILNKSGIISHVMSAISIEKFLESYIPLN 535
           I+     ++ M              N++ +  + +       +  +  +    +     +
Sbjct: 75  IEDGKKIFINMEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTS 134

Query: 536 AIKYLEEGKVV-------IFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSD 588
           AIK + +  +V       +     G    + D      A E+KA++IL AT VDG+   +
Sbjct: 135 AIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDN 194

Query: 589 PNKCLSAIIYKKITFDEVISKKLEIMDSTA-----FSFCRDQKLPIRVFSIIKSGALKRV 643
               +  I    I            +D T          R  K    VF+  K+  + + 
Sbjct: 195 KP--IKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKA 252

Query: 644 IEGKNEGTLV 653
           + G+ EGT +
Sbjct: 253 LLGEVEGTEI 262

>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1 Length = 84

 Score = 93.9 bits (234), Expect = 2e-23
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 689 GRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKKAINEANLG 747
           G +    LD+I V   +    L +I  I++ +   I +      E ++   KAI E+ + 
Sbjct: 1   GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60

Query: 748 LNPTIQGNIIYVSIPPLTKERRE 770
           LNP ++G +I V IP +T     
Sbjct: 61  LNPEVEGTLIRVPIPKVTSGPSS 83

>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Length = 145

 Score = 68.5 bits (168), Expect = 8e-14
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 10/72 (13%)

Query: 371 SYLH-DNKIGVIVEYNGDN---------ESAVKDVAMHIAAMKPIALSSDQIPKKIIEKE 420
            Y+H + ++GV+VE N +          ++  KD+AMHIA M P  +S+++IP + +EKE
Sbjct: 8   HYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKE 67

Query: 421 YSLAVLKAQQLG 432
             + +  A   G
Sbjct: 68  RQIYIQAALNEG 79

>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Length = 145

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 48/139 (34%)

Query: 274 AKDGVIAIYI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP--------- 322
           A++G+I  YI  +++VG LVE+NCETDFVA+N  F   +K +A  I    P         
Sbjct: 1   AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIP 60

Query: 323 ---------INLDQLNNL--------KI--------------------KNNLLTVDEKCK 345
                    I +    N         KI                    K++ + V E  +
Sbjct: 61  AEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQ 120

Query: 346 ELISRIGENIKIRRFKLFK 364
           + I++IGENI +RRF  F+
Sbjct: 121 QAIAKIGENIVVRRFCRFE 139

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.9 bits (170), Expect = 3e-12
 Identities = 84/578 (14%), Positives = 169/578 (29%), Gaps = 159/578 (27%)

Query: 38  HIINLEKTLYMYEKAIRYIYQLGFSKGTLL---FVGTKRQAR-----GVIANEAVRAGMP 89
           HII  +            ++    SK   +   FV    +         I  E  +  M 
Sbjct: 53  HIIMSKDA----VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 90  ---FIDQRWLGGLLTN---------------FKTIKTSIQRLKEMDLFITNG------SI 125
              +I+QR     L N               +  ++ ++  L+     + +G      + 
Sbjct: 109 TRMYIEQR---DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 126 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 185
             ++  +  L Y+ Q K+                IF +++       +    L   ++  
Sbjct: 166 --VA-LDVCLSYKVQCKM-------------DFKIFWLNLKNCNSPETVLEMLQ-KLLYQ 208

Query: 186 VDTNHS--PDGINYVIPGNDDSAKS------------IAL------YTKGIVDAF-LDAK 224
           +D N +   D     I     S ++              L            +AF L  K
Sbjct: 209 IDPNWTSRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 225 TVGELRSKT----LAPIMECKKALIEANGKLSKAE--EILRIKLGKKILNISN----RNA 274
            +   R K     L+       +L   +  L+  E   +L      K L+       R  
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-----KYLDCRPQDLPREV 322

Query: 275 KDG---VIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQL--- 328
                  ++I I+E   S+ +     D   K+    K +  I   +    P    ++   
Sbjct: 323 LTTNPRRLSI-IAE---SIRDGLATWDNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 329 -----NNLKIKNNLLTV-----DEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKI 378
                 +  I   LL++      +    ++     N   +   + K        +     
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVV----VNKLHKYSLVEKQPKESTISIPS--- 430

Query: 379 GVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKG 438
            + +E     E    + A+H               + I++  Y++               
Sbjct: 431 -IYLELKVKLE---NEYALH---------------RSIVDH-YNIP-KTFDSDDLIPPYL 469

Query: 439 DAYNINSSI---IKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGM 495
           D Y   S I   +KNI  E  E ++    + +     +  R +  KI++   +      +
Sbjct: 470 DQY-FYSHIGHHLKNI--EHPERMTLFRMVFL-----DF-RFLEQKIRHDSTAWNASGSI 520

Query: 496 LATIINSLALFD--ILNKSGIISHVMSAISIEKFLESY 531
           L T+   L  +   I +       +++A  I  FL   
Sbjct: 521 LNTLQQ-LKFYKPYICDNDPKYERLVNA--ILDFLPKI 555

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 6e-11
 Identities = 99/688 (14%), Positives = 208/688 (30%), Gaps = 171/688 (24%)

Query: 203 DDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKL 262
           D          K I+  F DA               +CK         LSK EEI     
Sbjct: 8   DFETGEHQYQYKDILSVFEDA----------FVDNFDCKDVQDMPKSILSK-EEI----- 51

Query: 263 GKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFS-KKIAKLITENT 321
              I+   +  +    +   +  K   +V+   E + +  N +F+    K   +  +  T
Sbjct: 52  -DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 322 PINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVI 381
            + ++Q + L   N +       K  +SR+   +K+R+  L +        L   K  V+
Sbjct: 110 RMYIEQRDRLYNDNQVFA-----KYNVSRLQPYLKLRQ-ALLE--------LRPAK-NVL 154

Query: 382 VEYNGDN--------ESAVKDVAMHIAAMKPI---ALSSDQIPKKIIEKEYSLAVLKAQQ 430
           ++  G                  +       I    L +   P+ ++E    L       
Sbjct: 155 ID--GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 431 LGEALMKGDAYNINSSIIKNIISEI---SEIVSCGIELAIVIGGGNICRGISNKIQNIDR 487
                       +    I+  +  +       +C   L ++    N+           + 
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVL---LNVQ----------NA 256

Query: 488 STADYMG----MLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEG 543
              +       +L T      + D L+     +   + IS++    +  P       +E 
Sbjct: 257 KAWNAFNLSCKILLTTRFK-QVTDFLS-----AATTTHISLDHHSMTLTP-------DEV 303

Query: 544 KVVIFAGGIGNPFFT----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYK 599
           K  +    +            TT   R + I   I       DG+   D         +K
Sbjct: 304 KS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR------DGLATWDN--------WK 348

Query: 600 KITFD---EVISKKLEIMDST-------AFS-FCRDQKLPIRVFSIIKSGALKRVIEGKN 648
            +  D    +I   L +++           S F     +P  + S+I    +K  +    
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM--- 405

Query: 649 EGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLT 708
                     ++++ + K      L     +++  K+          + +I ++    L 
Sbjct: 406 ----------VVVNKLHK----YSL-----VEKQPKESTIS------IPSIYLELKVKLE 440

Query: 709 KLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPP-LTKE 767
               +        H   +  +      I K   ++    L P       Y  I   L   
Sbjct: 441 NEYAL--------HRSIVDHYN-----IPKTFDSD---DLIPPYLDQYFYSHIGHHLKNI 484

Query: 768 RREEIVKLIKNITEETKISIRKIRRD-SNENLKKLLKNKILSVDNEYR-------AQYDI 819
              E + L + +  + +   +KIR D +  N    + N +  +   Y+        +Y+ 
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-YKPYICDNDPKYE- 542

Query: 820 QKLTD--KFILEINQ-LLINKEKEILTL 844
           + +     F+ +I + L+ +K  ++L +
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 8e-06
 Identities = 105/669 (15%), Positives = 204/669 (30%), Gaps = 181/669 (27%)

Query: 113 LKEMDLFITNGSIRK-LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAI----FIIDVGY 167
           +   D        +  LSK+E                 I ++ +  DA+     +     
Sbjct: 30  VDNFDCKDVQDMPKSILSKEE-----------------IDHIIMSKDAVSGTLRLFWTLL 72

Query: 168 HKGA------VSEAIKLNIPI----IGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIV 217
            K        V E +++N       I       S     Y I   D       ++ K  V
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFAKYNV 131

Query: 218 DAFLDAKTVGELRSKTLAPIMECKKALIEAN-------------GKLSKAEEILR----- 259
                       R +   P ++ ++AL+E               GK   A ++       
Sbjct: 132 S-----------RLQ---PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 260 IKLGKKI--LNISNRNAKDGVIAIY--ISEKVGSLVEINCETDFVAKNN-EFIKFSKKIA 314
            K+  KI  LN+ N N+ + V+ +   +  ++        +     K     I+   ++ 
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELR 235

Query: 315 KLITENT-PINLDQLNNLKIKNNLLTVDEKCKELI-SR---IGENIKIRRFKLFKTNNNL 369
           +L+        L  L N++        +  CK L+ +R   + + +          +++ 
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 370 ISYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEK----EYSLAV 425
           ++   D    ++++Y       +    +      P  LS   I + I +     +    V
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLS--IIAESIRDGLATWDNWKHV 350

Query: 426 LKAQQLGEALMKGDAYNINSSIIKNIISEIS--EIVSCGIELAIVIGGGNICRGISNKIQ 483
              +               ++II++ ++ +   E       L++     +    I   + 
Sbjct: 351 NCDKL--------------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTILL 392

Query: 484 NI---DRSTADYMGMLATIIN-SLALFDILNKSGIIS-HVMSAISIEKFLESYIPLNAIK 538
           ++   D   +D M ++  +   SL       K   IS       SI  +LE  + L    
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQ--PKESTISIP-----SI--YLELKVKLENEY 443

Query: 539 YLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG-IYNSDPNKCLSAII 597
            L   + ++    I   F + D               L    +D   Y+         I 
Sbjct: 444 ALH--RSIVDHYNIPKTFDSDD---------------LIPPYLDQYFYSH--------IG 478

Query: 598 Y--KKITFDEVIS--KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
           +  K I   E ++  + +  +D   F F   QK       I                   
Sbjct: 479 HHLKNIEHPERMTLFRMV-FLD---FRFLE-QK-------IRHDSTAWNASGSILNTLQQ 526

Query: 654 YEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKI 713
            + Y   I D      ++++N I    + L K+     N+     I  KY    T LL+I
Sbjct: 527 LKFYKPYICD-NDPKYERLVNAI---LDFLPKIEE---NL-----ICSKY----TDLLRI 570

Query: 714 ANITLFNSH 722
           A   L    
Sbjct: 571 A---LMAED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 66/431 (15%), Positives = 134/431 (31%), Gaps = 152/431 (35%)

Query: 22  WNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIY------QLGFSKG---TLL--FVG 70
            N K  +  F    KI +    K +  +  A    +       +  +     +LL  ++ 
Sbjct: 254 QNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 71  TK-----RQAR-------GVIANEAVRAGMPFIDQRWLGGLLTNFK---------TIKTS 109
            +     R+          +IA E++R G+      W      N+K          I++S
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIA-ESIRDGL----ATW-----DNWKHVNCDKLTTIIESS 362

Query: 110 IQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK 169
           +  L+  +        RK+        +    +L               ++F        
Sbjct: 363 LNVLEPAEY-------RKM--------FD---RL---------------SVFPPSA---- 385

Query: 170 GAVSEAIKLNIP--IIGVVDTNHSPDGINYVIPGNDDSAKSIAL-----YTKGIVDAFLD 222
                    +IP  ++ ++  +     +  V+  N     S+        T  I   +L+
Sbjct: 386 ---------HIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 223 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIY 282
            K   +L ++         +++++             I       ++      D     +
Sbjct: 435 LKV--KLENEY-----ALHRSIVDH----------YNIPKTFDSDDLI-PPYLDQYFYSH 476

Query: 283 I---------SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPIN-----LDQL 328
           I          E++     +    DF      F++      K+  ++T  N     L+ L
Sbjct: 477 IGHHLKNIEHPERMTLFRMV--FLDF-----RFLE-----QKIRHDSTAWNASGSILNTL 524

Query: 329 NNLKI-KNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDN--KIGVIVEYN 385
             LK  K  +   D K + L++ I +      F L K   NLI   + +  +I ++ E  
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILD------F-LPKIEENLICSKYTDLLRIALMAEDE 577

Query: 386 GDNESAVKDVA 396
              E A K V 
Sbjct: 578 AIFEEAHKQVQ 588

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Length = 64

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDG 277
             + + +LR KT    + CKKAL    G L +AE  L  +  K+  + +      G
Sbjct: 9   SKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG 64

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421

 Score = 55.2 bits (134), Expect = 5e-08
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 31/133 (23%)

Query: 538 KYLEEGKVVIFAG--GIG--NPFFTT------DTTAALRAAEIKAEIILKATKVDGIYNS 587
           + L+EGK+ I AG  G+       TT      DTTA   AA + A++    + VDG+Y +
Sbjct: 123 EALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTA 182

Query: 588 DPNKCLSAIIYKKITFDEVISKKLE-------IMDSTAFSFCRDQKLPIRVFSIIKSGAL 640
           DP    +A   +K++F+E+    LE       I+   +  + R   +P+RV S       
Sbjct: 183 DPRIVPNAQKLEKLSFEEM----LELAAVGSKILVLRSVEYARAFNVPLRVRSSYS---- 234

Query: 641 KRVIEGKNEGTLV 653
                  + GTL+
Sbjct: 235 ------NDPGTLI 241

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 11/79 (13%)

Query: 538 KYLEEGKVVIFAG--GIGNPF---FTT------DTTAALRAAEIKAEIILKATKVDGIYN 586
            +L EGKVV+ AG  GI +      TT      DT+A   AA +KA+     T V GI  
Sbjct: 123 HHLREGKVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILT 182

Query: 587 SDPNKCLSAIIYKKITFDE 605
           +DP     A +  +IT DE
Sbjct: 183 TDPRLVPEAQLMAEITCDE 201

>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* Length = 286

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 22/185 (11%), Positives = 58/185 (31%), Gaps = 14/185 (7%)

Query: 437 KGDAYNINSSIIKNIISEISEIVSCGIELAIVI-GGGNICRGISNKIQNIDRSTADYMGM 495
           K +  +++   +       + +        ++I GGG    G      +    +   +  
Sbjct: 38  KDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHDSTHAFSLAGLTE 97

Query: 496 LATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIK----YLEEGKVVIFAG- 550
               +      + L   G+ +  +   ++   L + IP    +     L+ G + + AG 
Sbjct: 98  ATFEVKKRWA-EKLRGIGVDAFPLQLAAMC-TLRNGIPQLRSEVLRDVLDHGALPVLAGD 155

Query: 551 -----GIGNPFFTTDTTAALRAAEIKAEI-ILKATKVDGIYNSDPNKCLSAIIYKKITFD 604
                      F++D    +    ++  + ++  T VDGI                 + +
Sbjct: 156 ALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAGGDTILPEVDARSPE 215

Query: 605 EVISK 609
           +  + 
Sbjct: 216 QAYAA 220

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 36/242 (14%)

Query: 437 KGDAYNINSSIIKNIISEISEIVSCGIELAIV----IGGGNICRGISNKIQNIDRSTADY 492
           K       +  I++I+  +S       +L  V       G+I           +  ++  
Sbjct: 18  KSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSFGHIKAMEFGLPGPKNPRSS-- 71

Query: 493 MGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAI----KYLEEGKV--- 545
           +G      +   L  ++  + +I   M  IS+      Y          +Y++ G V   
Sbjct: 72  IGYSIVHRDMENLDLMVIDA-MIEMGMRPISVPISALRYDGRFDYTPLIRYIDAGFVPVS 130

Query: 546 ---VIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKIT 602
              V          ++ D   A  A  +K ++ +  T VDGIY+ DP +   A++ + I 
Sbjct: 131 YGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID 190

Query: 603 FDEVISK-----------KLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT 651
            +    +           K E    +        K  + + +      +  + +    GT
Sbjct: 191 TNITFDRVQNDVTGGIGKKFE----SMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGT 246

Query: 652 LV 653
           ++
Sbjct: 247 VI 248

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Length = 446

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 13/187 (6%)

Query: 430 QLGEALMKGDAYNINSSIIKNIISEISEI-VSCGIELAIVIGGGNICRGISNKIQNIDRS 488
           ++ + L   +A+  N     ++   IS+       EL I +        +   I+N   +
Sbjct: 50  KITDLLYLCNAHVKNGIPFDDVFKLISQRYTEIVSELNIDMDIAYYLEKVKKNIENG--A 107

Query: 489 TADYMGMLATIINSLALFDILNKSGI-ISHVMSAISIEKFLESYIPLNAIKYLEEGKVVI 547
           ++DY       +N + L   LN   I  + V+       F E        + +      +
Sbjct: 108 SSDYAASRGEYLNGVILAKYLNAEFIDAAEVIFFDKSGCFDEKKSYEKIKEKVLSCNKAV 167

Query: 548 FAGGIG-NPFFTTDT--------TAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIY 598
             G  G +      T        T ++ +A + A++    T V G   +DP    +    
Sbjct: 168 IPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTI 227

Query: 599 KKITFDE 605
            KI++ E
Sbjct: 228 SKISYKE 234

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 10/95 (10%)

Query: 521 AISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFT----------TDTTAALRAAEI 570
              +E    +        ++ +  V I  G +G  + T          +D TA      +
Sbjct: 185 GDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKAL 244

Query: 571 KAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE 605
             + I     VDG+   DP     A     +TFDE
Sbjct: 245 GLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDE 279

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449

 Score = 44.9 bits (107), Expect = 8e-05
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 540 LEEGKVVIFAGGIG-NPFFTTDT--------TAALRAAEIKAEIILKATKVDGIYNSDPN 590
                +VI  G IG      T T        TAAL A  + A  +   T V GIY +DP 
Sbjct: 173 RLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPR 232

Query: 591 KCLSAIIYKKITFDE 605
              +A    +I F E
Sbjct: 233 VVSAAKRIDEIAFAE 247

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	844
d2uubb1	234	c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus	3e-66
d2gy9b1	218	c.23.15.1 (B:8-225) Ribosomal protein S2 {Escheric	9e-66
d1vi6a_	193	c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Arch	2e-43
d1wqga1	183	d.67.3.1 (A:2-184) Ribosome recycling factor, RRF	3e-43
d1eh1a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther	2e-42
d1is1a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibr	3e-42
d1ek8a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Esch	2e-40
d1dd5a_	184	d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther	2e-39
d1ge9a_	184	d.67.3.1 (A:) Ribosome recycling factor, RRF {Aqui	6e-38
d2a1fa1	236	c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi	2e-35
d1ybda1	236	c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri	7e-34
d1z9da1	238	c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptoc	1e-31
d2ij9a1	219	c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog	2e-27
d1xb2b2	111	d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts),	2e-22
d1efub4	85	d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts),	9e-22
d1wiha_	84	d.67.3.1 (A:) Ribosome recycling factor, RRF {Mous	3e-19
d2brxa1	225	c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc	1e-18
d2cdqa1	304	c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Ar	1e-13
d1efub2	143	d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts),	2e-12
d1xb2b1	56	a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N	4e-11
d1aipc1	52	a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-t	4e-11
d1efub3	54	a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-t	5e-11
d2hmfa1	302	c.73.1.3 (A:2-303) Aspartokinase {Methanococcus ja	1e-10
d2j0wa1	292	c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli	1e-09
d1tfea_	142	d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimeri	7e-08
d1tfea_	142	d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimeri	1e-04
d1xb2b3	109	d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts),	9e-06

>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]} Length = 234

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Thermus thermophilus [TaxId: 274]

 Score =  218 bits (556), Expect = 3e-66
 Identities = 100/220 (45%), Positives = 147/220 (66%)

Query: 5   IREMLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKG 64
           ++E+LEAGVHFGH+ + WNPK + YI+  RN IHII+L+KT+   E+  R+I  L    G
Sbjct: 1   VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGG 60

Query: 65  TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGS 124
           T+LFVGTK+QA+ ++  EA RAGMP+++QRWLGG+LTNFKTI   + RL+E++    +  
Sbjct: 61  TILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPE 120

Query: 125 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIG 184
           I +  KKE +    +  +L + + G + +  +PDAIF++D      AV EA KL IP+I 
Sbjct: 121 IEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIA 180

Query: 185 VVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           + DT+  PD ++Y+IPGNDD+ +SI L     VD  + A+
Sbjct: 181 LADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 220

>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]} Length = 218

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Escherichia coli [TaxId: 562]

 Score =  216 bits (551), Expect = 9e-66
 Identities = 104/218 (47%), Positives = 154/218 (70%)

Query: 8   MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 67
           ML+AGVHFGHQTR+WNPKM  +IFG RNK+HIINLEKT+ M+ +A+  + ++   KG +L
Sbjct: 1   MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 60

Query: 68  FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 127
           FVGTKR A   + + A+     F++ RWLGG+LTN+KT++ SI+RLK+++    +G+  K
Sbjct: 61  FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 120

Query: 128 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 187
           L+KKEAL+  R+  KL   +GGIK+M  +PDA+F+ID  +   A+ EA  L IP+  +VD
Sbjct: 121 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 180

Query: 188 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 225
           TN  PDG+++VIPGNDD+ +++ LY   +     + ++
Sbjct: 181 TNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRS 218

>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  153 bits (389), Expect = 2e-43
 Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 51/223 (22%)

Query: 3   ITIREMLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGF 61
           +   + L AGVH G Q +  +  M  +IF  R + ++++++ K       A +++ +  +
Sbjct: 6   VPPDDYLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSR--Y 61

Query: 62  SKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 121
               +L V  ++ A   +   +   G  +I  R++ G LTN                   
Sbjct: 62  EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNP------------------ 103

Query: 122 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 181
                                       + +    P+ +F+ D    K AVSEA  + IP
Sbjct: 104 ----------------------------MLSEYREPEVVFVNDPAIDKQAVSEATAVGIP 135

Query: 182 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 224
           ++ + D+N+S   ++ VIP N+   +++A+    +       +
Sbjct: 136 VVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIR 178

>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  152 bits (386), Expect = 3e-43
 Identities = 64/182 (35%), Positives = 111/182 (60%)

Query: 661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 720
           I +   + ++KM   + + +++L  +RTGRAN GM   I + Y+   T + ++A+I +  
Sbjct: 1   IDEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPE 60

Query: 721 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 780
           +  + I+P+E      I+ AI  ++LG+NPT  G +I V++P LT+ERR E+VK  K+  
Sbjct: 61  ARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKG 120

Query: 781 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 840
           EE K+S+R IRR + E L ++ K      D   RA+ D+ K T +++ +I++L+ +KE E
Sbjct: 121 EEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGE 180

Query: 841 IL 842
           +L
Sbjct: 181 LL 182

>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermus thermophilus [TaxId: 274]

 Score =  150 bits (381), Expect = 2e-42
 Identities = 72/184 (39%), Positives = 126/184 (68%)

Query: 659 MIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITL 718
           M + ++   T+  M  ++++L+ NL  +RTGRAN  +L +++V+Y+     L +IA +T 
Sbjct: 1   MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTA 60

Query: 719 FNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKN 778
            +  T+ +Q +++     I+KAI +++LGLNP+ +G+ +Y++IPPLT+ERR+++V+ ++ 
Sbjct: 61  PDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQ 120

Query: 779 ITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKE 838
             EE +++IR IRR++ + LKKL K   LS D   RA+ +IQK+TD+FI + +QL   KE
Sbjct: 121 YAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKE 180

Query: 839 KEIL 842
           +EIL
Sbjct: 181 QEIL 184

>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Vibrio parahaemolyticus [TaxId: 670]

 Score =  150 bits (379), Expect = 3e-42
 Identities = 79/183 (43%), Positives = 132/183 (72%)

Query: 661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 720
           I++IKK+ +++M  +++ LK NL KVRTGRA+  +L  I V+Y+   T L ++AN+   +
Sbjct: 2   INEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAED 61

Query: 721 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 780
           + T++I  F+KE++  ++KAI  ++LGLNP   G II V +PPLT+ERR+++VK+++   
Sbjct: 62  ARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEA 121

Query: 781 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 840
           E  ++++R IRRD+N +LK LLK+K +S D + +AQ +IQKLTD  + +I+++L  KEKE
Sbjct: 122 EGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKE 181

Query: 841 ILT 843
           ++ 
Sbjct: 182 LME 184

>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Escherichia coli [TaxId: 562]

 Score =  145 bits (366), Expect = 2e-40
 Identities = 74/183 (40%), Positives = 128/183 (69%)

Query: 660 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLF 719
           +ISDI+K+ + +M   ++  K  + K+RTGRA+  +LD I V+Y+   T L ++A++T+ 
Sbjct: 1   MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE 60

Query: 720 NSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNI 779
           +S T+ I  F++ MS  ++KAI  ++LGLNP   G+ I V +PPLT+ERR+++ K+++  
Sbjct: 61  DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE 120

Query: 780 TEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 839
            E+ ++++R +RRD+N+ +K LLK+K +S D++ R+Q D+QKLTD  I +I   L +KE 
Sbjct: 121 AEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA 180

Query: 840 EIL 842
           E++
Sbjct: 181 ELM 183

>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]} Length = 184

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermotoga maritima [TaxId: 2336]

 Score =  142 bits (358), Expect = 2e-39
 Identities = 68/182 (37%), Positives = 121/182 (66%)

Query: 661 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 720
           ++   K  K+KM  T++ +++ L+K+RTG+ +  +L+ I+V Y+   T + ++A I++  
Sbjct: 1   VNPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISE 60

Query: 721 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 780
             T+ I+P++K + S+I+KAIN ++LGLNP   GN+I +  P  T E+RE+ VK  K I 
Sbjct: 61  ERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIV 120

Query: 781 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 840
           EE KI+IR IRR+  + +K+  K  ++  D+  R + +IQKLTD+FI +++++   K++E
Sbjct: 121 EEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEE 180

Query: 841 IL 842
           I+
Sbjct: 181 IM 182

>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]} Length = 184

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Aquifex aeolicus [TaxId: 63363]

 Score =  137 bits (347), Expect = 6e-38
 Identities = 71/186 (38%), Positives = 121/186 (65%), Gaps = 4/186 (2%)

Query: 658 IMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANIT 717
           I  + DI K  ++ M   ++  K  +  +RT RA+  +++ I+V+Y+     + ++  I+
Sbjct: 2   IKELEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTIS 61

Query: 718 LFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIK 777
           +   + I IQ +++     I+KAI E  L LNPT+QGN+I V++PPLT+ERR E+V+L+ 
Sbjct: 62  VPEHNQIVIQVWDQNAVPAIEKAIRE-ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLH 120

Query: 778 NITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 837
            ITEE ++ +R +RR++ E +++L   + +S D + RA   +QKLTDK+I EIN+L+  K
Sbjct: 121 KITEEARVRVRNVRREAKEMIEEL---EGISEDEKKRALERLQKLTDKYIDEINKLMEAK 177

Query: 838 EKEILT 843
           EKEI++
Sbjct: 178 EKEIMS 183

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

 Score =  132 bits (332), Expect = 2e-35
 Identities = 102/222 (45%), Positives = 152/222 (68%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           GEAL   D   I+ +I+  +  EI E+V  G+E+++V+GGGN+ RG       ++R   D
Sbjct: 14  GEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGD 73

Query: 492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 551
           +MGMLAT++N LA+ D L ++ + + +MSA  +    ++Y    AIK L E +VVIF+ G
Sbjct: 74  HMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAG 133

Query: 552 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 611
            GNPFFTTD+TA LR  EI+A+++LKATKVDG+Y+ DP K   A +YK +++ EVI K+L
Sbjct: 134 TGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKEL 193

Query: 612 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
           ++MD +AF+  RD  +PIRVF++ K GAL++V+ G  EGT +
Sbjct: 194 KVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI 235

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

 Score =  127 bits (320), Expect = 7e-34
 Identities = 123/223 (55%), Positives = 166/223 (74%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           GE+LM  D + IN   I   + EI+E+V  G+++ IV+GGGNI RG+S +  ++DR+TAD
Sbjct: 13  GESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATAD 72

Query: 492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 551
           YMGM+AT++N+LAL D     GI + V SA+S+++  E+Y    AI+YLEEGKVVIFA G
Sbjct: 73  YMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAG 132

Query: 552 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 611
            GNPFFTTDT AALR AE+  +++LKAT VDG+Y +DP K  SA  Y+ ITFDE + K L
Sbjct: 133 TGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNL 192

Query: 612 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654
           ++MD+TAF+ CR++KL I VF I K G+LKRVI G++EGTLV+
Sbjct: 193 KVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 235

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} Length = 238

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

 Score =  121 bits (303), Expect = 1e-31
 Identities = 84/223 (37%), Positives = 138/223 (61%), Gaps = 1/223 (0%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 491
           GEAL       I+   ++ I  EI+E+   G+++A+VIGGGN+ RG       +DR  AD
Sbjct: 13  GEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQAD 72

Query: 492 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 551
           Y GML T++N+L + D L   G+ + V +AI ++   E YI   A+++LE+ ++V+F  G
Sbjct: 73  YTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAG 132

Query: 552 IGNPFFTTD-TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 610
           IG+P+F+TD T A   A      I++    VDG+YN+DP K  +A+ + ++T  EVI + 
Sbjct: 133 IGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRG 192

Query: 611 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
           L+IMD+TA +   D  + + VF++ ++G ++RV+ G++ GT V
Sbjct: 193 LKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTV 235

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  109 bits (272), Expect = 2e-27
 Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 34/233 (14%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRST 489
           G  L         S  I+     I  +     ++ +V+GGG + R      +      + 
Sbjct: 9   GSVLSN------ESEKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARELGASETF 61

Query: 490 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 549
            DY+G+ AT +N++ L   +  +     V               + A +  +  +VV+  
Sbjct: 62  CDYIGIAATRLNAMLLISAIPSAAKKVPVD-------------FMEAEELSKLYRVVVMG 108

Query: 550 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISK 609
           G    P  TTD TAAL A  IKA++ + AT VDG+Y++DP    SA+ Y +++  +++  
Sbjct: 109 GT--FPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEI 166

Query: 610 KLE---------IMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
                       ++D  A       K+   V        + + ++G+  GT++
Sbjct: 167 VSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL-GTPENIMKAVKGEAVGTVI 218

>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 111

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 90.9 bits (225), Expect = 2e-22
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 14/107 (13%)

Query: 272 RNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNL 331
           R  K+G+I +        LVE+NCETDFV++N +F +  +++A     +     DQL+  
Sbjct: 2   RKTKEGLIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTY 61

Query: 332 K--------------IKNNLLTVDEKCKELISRIGENIKIRRFKLFK 364
                                ++ ++    I ++GEN+ ++R    K
Sbjct: 62  SKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVK 108

>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Escherichia coli [TaxId: 562]

 Score = 88.0 bits (218), Expect = 9e-22
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 274 AKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKI 333
           A DGVI   I    G ++E+NC+TDFVAK+  F  F+ K+          +++ L     
Sbjct: 2   AADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKA--- 58

Query: 334 KNNLLTVDEKCKELISRIGENIKIRRFKLF 363
                  +E+   L+++IGENI IRR    
Sbjct: 59  -----QFEEERVALVAKIGENINIRRVAAL 83

>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} Length = 84

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

 Score = 81.0 bits (200), Expect = 3e-19
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 689 GRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKKAINEANLG 747
           G +    LD+I V   +    L +I  I++ +   I +      E ++   KAI E+ + 
Sbjct: 1   GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60

Query: 748 LNPTIQGNIIYVSIPPLTKERRE 770
           LNP ++G +I V IP +T     
Sbjct: 61  LNPEVEGTLIRVPIPKVTSGPSS 83

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 83.5 bits (205), Expect = 1e-18
 Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 29/234 (12%)

Query: 432 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS--NKIQNIDRST 489
           G  L+     N +   IK I  +++++     E+A+V+GGG + R      +  N   + 
Sbjct: 9   GSVLVPE---NPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETF 64

Query: 490 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 549
            D++G+  T  N++ L   L +      V       K ++                 I  
Sbjct: 65  KDFIGIQITRANAMLLIAALREKAYPVVVEDFWEAWKAVQLK--------------KIPV 110

Query: 550 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS- 608
            G  +P  TTD  AAL A  +KA++++  T VDG+Y +DP K  +A   KK+  +E++  
Sbjct: 111 MGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEI 170

Query: 609 --------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 654
                       ++D  A        +   V     +  L RVI+G + GT + 
Sbjct: 171 VGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIE 224

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 70.3 bits (171), Expect = 1e-13
 Identities = 33/227 (14%), Positives = 74/227 (32%), Gaps = 29/227 (12%)

Query: 447 IIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATI------- 499
            +K +  + S I++   EL  ++ G  + + ++ + ++   S  + +             
Sbjct: 80  TVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIG 139

Query: 500 INSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGN----- 554
           + +                 +   +E    +        ++ +  V I  G +G      
Sbjct: 140 VKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTG 199

Query: 555 -----PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-- 607
                    +D TA      +  + I     VDG+   DP     A     +TFDE    
Sbjct: 200 AVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAEL 259

Query: 608 -SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
                +++   +    R+ ++P+RV +             K  GT++
Sbjct: 260 AYFGAQVLHPQSMRPAREGEIPVRVKNS---------YNPKAPGTII 297

>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Length = 143

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Escherichia coli [TaxId: 562]

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query: 371 SYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQ 430
           SY H  +IGV+V   G +E  VK +AMH+AA KP  +  + +  +++EKEY + +  A Q
Sbjct: 5   SYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQ 64

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 56

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 56.5 bits (137), Expect = 4e-11
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNR 272
             + + +LR KT    + CKKAL    G L +AE  L  +  K+  + + R
Sbjct: 4   SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAAR 54

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 52

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 56.5 bits (137), Expect = 4e-11
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 222 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNR 272
             + + +LR  T A +M+ K+AL +A     KA ++LR +   K    ++R
Sbjct: 2   QMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADR 52

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 54

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 56.5 bits (137), Expect = 5e-11
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query: 219 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKK 265
           A + A  V ELR +T A +M+CKKAL EANG +  A E +R     K
Sbjct: 1   AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIK 47

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score = 61.0 bits (147), Expect = 1e-10
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 21/129 (16%)

Query: 537 IKYLEEGKVVIFAGGIGN---------PFFTTDTTAALRAAEIKAEIILKATKVDGIYNS 587
           +  L+EG + +  G IG              +D +AAL    + A+II   T V G+Y +
Sbjct: 178 LPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTT 237

Query: 588 DPNKCLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 644
           DP    +A    K+++ E +       +++         ++ +PI V +           
Sbjct: 238 DPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNT---------F 288

Query: 645 EGKNEGTLV 653
           E ++EGTL+
Sbjct: 289 EPESEGTLI 297

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 12/102 (11%)

Query: 555 PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI---SKKL 611
               +D TAAL A  + A  +   T V GIY +DP    +A    +I F E     +   
Sbjct: 195 GRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGA 254

Query: 612 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 653
           +++            +P+ V S           + +  GTLV
Sbjct: 255 KVLHPATLLPAVRSDIPVFVGSS---------KDPRAGGTLV 287

>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Length = 142

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Thermus thermophilus [TaxId: 274]

 Score = 50.1 bits (119), Expect = 7e-08
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 48/139 (34%)

Query: 274 AKDGVIAIYI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP-------IN 324
           A++G+I  YI  +++VG LVE+NCETDFVA+N  F   +K +A  I    P       I 
Sbjct: 1   AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIP 60

Query: 325 LDQLNNLK---------------------------------------IKNNLLTVDEKCK 345
            ++L   +                                       +K++ + V E  +
Sbjct: 61  AEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQ 120

Query: 346 ELISRIGENIKIRRFKLFK 364
           + I++IGENI +RRF  F+
Sbjct: 121 QAIAKIGENIVVRRFCRFE 139

>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Length = 142

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Thermus thermophilus [TaxId: 274]

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 10/74 (13%)

Query: 371 SYLH-DNKIGVIVEYNGDNESA---------VKDVAMHIAAMKPIALSSDQIPKKIIEKE 420
            Y+H + ++GV+VE N + +            KD+AMHIA M P  +S+++IP + +EKE
Sbjct: 8   HYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKE 67

Query: 421 YSLAVLKAQQLGEA 434
             + +  A   G+ 
Sbjct: 68  RQIYIQAALNEGKP 81

>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 109

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 42.9 bits (101), Expect = 9e-06
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 18/70 (25%)

Query: 371 SYLHDN------------KIGVIVEYNGDNESA-----VKDVAMHIAAMKPIALSSDQIP 413
           SY+H              K G +V        A      + +  H+  M P+++ S    
Sbjct: 6   SYVHGAMHSPSLHNLVLGKYGALVICETSELKANLADLGRRLGQHVVGMAPLSVGSLDDE 65

Query: 414 KKIIEKEYSL 423
               E E  +
Sbjct: 66  PG-GEAETKM 74