Psyllid ID: psy3925

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MNLYTSVQTTACIFEAQEDMQSLKNFEQVFIKLMRRYKYLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSAEEGMSSEA
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MNLYTSVQTTACIFEAQEDMQSLKNFEQVFIKLMRRYKYLEKMFDEEMKKVLVFIKGFNETERIKLARMTALwitngsvpptVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKqftplfgaftdtAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSAEEGMSSEA
Flexible Loop (DISEMBL)
MNLYTSVQTTACIFEAQEDMQSLKNFEQVFIKLMRRYKYLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSAeegmssea
Low Complexity Region (SEG)
MNLYTSVQTTACIFEAQEDMQSLKNFEQVFIKLMRRYKYLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSAEEGMSSEA
Disordered region (IsUnstruct)
****TSVQTTACIFEAQEDMQSLKNFEQVFIKLMRRYKYLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWL***********
Disordered Region (DISOPRED)
******V*TTACIFEAQEDMQSLKNFEQVFIKLMRRYKYLEKMFDEEMKKV************IKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVEW*KK*ELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWY**************QMKKFVEW************
Disordered Region (DISEMBL)
MNLYTSVQTTACIFEAQEDMQSLKNFEQVFIKLMRRYKYLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQ**********
Disordered Region (DISPRO)
*NLYTSVQTTACIFEAQEDMQSLKNFEQVFIKLMRRYKYLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSAE*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLYTSVQTTACIFEAQEDMQSLKNFEQVFIKLMRRYKYLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSAEEGMSSEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q9VNE2	422	Protein extra bases OS=Dr	yes	N/A	0.547	0.272	0.698	9e-44
Q5ZL42	414	Basic leucine zipper and	yes	N/A	0.571	0.289	0.645	4e-41
Q6P7P5	419	Basic leucine zipper and	yes	N/A	0.571	0.286	0.616	7e-41
Q9CQC6	419	Basic leucine zipper and	yes	N/A	0.571	0.286	0.616	7e-41
Q7L1Q6	419	Basic leucine zipper and	yes	N/A	0.571	0.286	0.616	7e-41
Q6PD83	419	Basic leucine zipper and	yes	N/A	0.557	0.279	0.647	9e-41
Q5ZLT7	418	Basic leucine zipper and	no	N/A	0.547	0.275	0.655	1e-40
Q5R7L4	419	Basic leucine zipper and	yes	N/A	0.571	0.286	0.608	4e-40
Q9WTT7	419	Basic leucine zipper and	no	N/A	0.585	0.293	0.611	4e-40
Q6P2Z0	419	Basic leucine zipper and	yes	N/A	0.557	0.279	0.647	5e-40

>sp|Q9VNE2|EXBA_DROME Protein extra bases OS=Drosophila melanogaster GN=exba PE=1 SV=1

 Score =  176 bits (447), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 81/116 (69%), Positives = 100/116 (86%), Gaps = 1/116 (0%)

Query: 85  QVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC 144
           ++++ IWST+M+  EWNKKEELV +QA++HLK + PL  AF  T  R+ELAL+LKVQEFC
Sbjct: 292 EIIVIIWSTIMSLGEWNKKEELVTDQAVRHLKNYCPLLQAFASTD-RSELALILKVQEFC 350

Query: 145 YENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQ 200
           YENMN M+ FQKIILLFYKT+V+SEE+IL+WYKEGHS KGK+ FLEQM+KFVEWLQ
Sbjct: 351 YENMNFMKAFQKIILLFYKTEVLSEEIILRWYKEGHSNKGKMHFLEQMRKFVEWLQ 406

May be involved in memory formation.
Drosophila melanogaster (taxid: 7227)

>sp|Q5ZL42|BZW2_CHICK Basic leucine zipper and W2 domain-containing protein 2 OS=Gallus gallus GN=BZW2 PE=2 SV=1

 Score =  167 bits (423), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/124 (64%), Positives = 99/124 (79%), Gaps = 4/124 (3%)

Query: 81  PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKV 140
           P V+ +L   W+ VM  VEWNKKEELVAEQALKHLKQ+ PL   F+ T  ++EL L+ KV
Sbjct: 291 PAVIGLL---WTCVMNAVEWNKKEELVAEQALKHLKQYAPLLAVFS-TQGQSELILLQKV 346

Query: 141 QEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQ 200
           QE+CY+N++ M+ FQKI++LFYK DV+SEE ILKWYKE H  KGK +FL+QMKKFVEWLQ
Sbjct: 347 QEYCYDNIHFMKAFQKIVVLFYKADVLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQ 406

Query: 201 SAEE 204
           +AEE
Sbjct: 407 NAEE 410

May be involved in neuronal differentiation.

Gallus gallus (taxid: 9031)

>sp|Q6P7P5|BZW1_RAT Basic leucine zipper and W2 domain-containing protein 1 OS=Rattus norvegicus GN=Bzw1 PE=2 SV=1

 Score =  167 bits (422), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 104/125 (83%), Gaps = 5/125 (4%)

Query: 78  SVP-PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELAL 136
           ++P P V+ +   +WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T  ++EL L
Sbjct: 286 NIPEPVVIGI---VWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQGQSELTL 341

Query: 137 MLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFV 196
           +LK+QE+CY+N++ M+ FQKI++LFYK +V+SEE ILKWYK+ H  KGK +FLEQMKKFV
Sbjct: 342 LLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFV 401

Query: 197 EWLQS 201
           EWL++
Sbjct: 402 EWLKN 406

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQC6|BZW1_MOUSE Basic leucine zipper and W2 domain-containing protein 1 OS=Mus musculus GN=Bzw1 PE=1 SV=1

 Score =  167 bits (422), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 104/125 (83%), Gaps = 5/125 (4%)

Query: 78  SVP-PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELAL 136
           ++P P V+ +   +WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T  ++EL L
Sbjct: 286 NIPEPVVIGI---VWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQGQSELTL 341

Query: 137 MLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFV 196
           +LK+QE+CY+N++ M+ FQKI++LFYK +V+SEE ILKWYK+ H  KGK +FLEQMKKFV
Sbjct: 342 LLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFV 401

Query: 197 EWLQS 201
           EWL++
Sbjct: 402 EWLKN 406

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Mus musculus (taxid: 10090)

>sp|Q7L1Q6|BZW1_HUMAN Basic leucine zipper and W2 domain-containing protein 1 OS=Homo sapiens GN=BZW1 PE=1 SV=1

 Score =  167 bits (422), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 104/125 (83%), Gaps = 5/125 (4%)

Query: 78  SVP-PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELAL 136
           ++P P V+ +   +WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T  ++EL L
Sbjct: 286 NIPEPVVIGI---VWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQGQSELTL 341

Query: 137 MLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFV 196
           +LK+QE+CY+N++ M+ FQKI++LFYK +V+SEE ILKWYK+ H  KGK +FLEQMKKFV
Sbjct: 342 LLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFV 401

Query: 197 EWLQS 201
           EWL++
Sbjct: 402 EWLKN 406

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Homo sapiens (taxid: 9606)

>sp|Q6PD83|BZW1A_DANRE Basic leucine zipper and W2 domain-containing protein 1-A OS=Danio rerio GN=bzw1a PE=2 SV=1

 Score =  166 bits (420), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 77/119 (64%), Positives = 98/119 (82%), Gaps = 2/119 (1%)

Query: 85  QVLINI-WSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEF 143
           Q +I I W++VM+ VEWNKKEELV EQA+KHLKQ++PL  AFT     +EL L+LK+QE+
Sbjct: 290 QTMIGIVWTSVMSSVEWNKKEELVTEQAIKHLKQYSPLLKAFTSQGL-SELTLLLKIQEY 348

Query: 144 CYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSA 202
           CY+N++ M+ FQKI++L YK DV+SEEVILKWY EGH  KGK +FLEQMKKFVEWL++A
Sbjct: 349 CYDNIHFMKAFQKIVVLLYKADVLSEEVILKWYTEGHVAKGKSVFLEQMKKFVEWLKNA 407

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Danio rerio (taxid: 7955)

>sp|Q5ZLT7|BZW1_CHICK Basic leucine zipper and W2 domain-containing protein 1 OS=Gallus gallus GN=BZW1 PE=2 SV=1

 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 99/116 (85%), Gaps = 1/116 (0%)

Query: 86  VLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCY 145
           V+  IWS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T  ++EL L+LK+QE+CY
Sbjct: 291 VIAIIWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQGQSELTLLLKIQEYCY 349

Query: 146 ENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQS 201
           +N++ M+ FQKI++LFYK +V+SEE ILKWYK+ H  KGK +FLEQMKKFVEWL++
Sbjct: 350 DNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHLAKGKSVFLEQMKKFVEWLKN 405

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Gallus gallus (taxid: 9031)

>sp|Q5R7L4|BZW1_PONAB Basic leucine zipper and W2 domain-containing protein 1 OS=Pongo abelii GN=BZW1 PE=2 SV=1

 Score =  164 bits (415), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 103/125 (82%), Gaps = 5/125 (4%)

Query: 78  SVP-PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELAL 136
           ++P P V+ +   +WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T  ++EL L
Sbjct: 286 NIPEPVVIGI---VWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQGQSELTL 341

Query: 137 MLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFV 196
           +LK+QE+CY+N++ M+ FQKI++LFYK +V+SE  ILKWYK+ H  KGK +FLEQMKKFV
Sbjct: 342 LLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEGPILKWYKDAHVAKGKSVFLEQMKKFV 401

Query: 197 EWLQS 201
           EWL++
Sbjct: 402 EWLKN 406

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Pongo abelii (taxid: 9601)

>sp|Q9WTT7|BZW2_RAT Basic leucine zipper and W2 domain-containing protein 2 OS=Rattus norvegicus GN=Bzw2 PE=2 SV=1

 Score =  164 bits (415), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 77/126 (61%), Positives = 99/126 (78%), Gaps = 3/126 (2%)

Query: 77  GSVPPTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELAL 136
             +P T   V+  +W+ VM  VEWNKKEELVAEQALKHLKQ+ PL   F+ +  ++EL L
Sbjct: 286 NDLPETA--VIGLLWTCVMNAVEWNKKEELVAEQALKHLKQYAPLLAVFS-SQGQSELVL 342

Query: 137 MLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFV 196
           + KVQE+CY+N++ M+ FQKI++LFYK DV+SEE ILKWYKE H+ KGK +FL+QMKKFV
Sbjct: 343 LQKVQEYCYDNIHFMKAFQKIVVLFYKADVLSEEAILKWYKEAHAAKGKSVFLDQMKKFV 402

Query: 197 EWLQSA 202
           EWLQ+A
Sbjct: 403 EWLQNA 408

May be involved in neuronal differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q6P2Z0|BZW1_XENTR Basic leucine zipper and W2 domain-containing protein 1 OS=Xenopus tropicalis GN=bzw1 PE=2 SV=1

 Score =  164 bits (414), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 77/119 (64%), Positives = 100/119 (84%), Gaps = 2/119 (1%)

Query: 85  QVLINI-WSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEF 143
           Q +I I WS+VM+ VEWNKKEELV EQA+KHLKQ++PL  AFT T  ++EL L+LK+QE+
Sbjct: 290 QTVIGILWSSVMSCVEWNKKEELVTEQAIKHLKQYSPLLAAFT-TQGQSELTLLLKIQEY 348

Query: 144 CYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSA 202
           CY+N++ M+ FQKI++LFYK +V+SEE ILKWYK+ H  KGK +FLEQMKKFVEWL++A
Sbjct: 349 CYDNIHFMKSFQKIVVLFYKAEVLSEEPILKWYKDAHLAKGKSVFLEQMKKFVEWLKNA 407

Enhances histone H4 gene transcription but does not seem to bind DNA directly.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
345312999	215	PREDICTED: basic leucine zipper and W2 d	0.838	0.818	0.536	1e-56
307212973	452	Protein extra bases [Harpegnathos saltat	0.557	0.258	0.805	4e-49
307184506	420	Protein extra bases [Camponotus floridan	0.557	0.278	0.796	5e-49
383851709	420	PREDICTED: protein extra bases-like [Meg	0.557	0.278	0.788	2e-48
322789621	205	hypothetical protein SINV_14753 [Solenop	0.557	0.570	0.788	3e-48
350425922	420	PREDICTED: protein extra bases-like [Bom	0.557	0.278	0.796	4e-48
156538142	420	PREDICTED: protein extra bases-like [Nas	0.533	0.266	0.787	5e-48
340726150	420	PREDICTED: protein extra bases-like [Bom	0.557	0.278	0.788	6e-48
124487980	215	putative eukaryotic initiation factor 5C	0.628	0.613	0.711	6e-48
110768098	420	PREDICTED: protein extra bases [Apis mel	0.557	0.278	0.796	8e-48

>gi|345312999|ref|XP_003429332.1| PREDICTED: basic leucine zipper and W2 domain-containing protein 1-like, partial [Ornithorhynchus anatinus]

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 111/207 (53%), Positives = 150/207 (72%), Gaps = 31/207 (14%)

Query: 29  VFIKLMRRYKYLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLI 88
           VF KL+RRYKYLEK F++E+KK+L+F+KGF+E+ER KLA +T + + NG++  ++L  L 
Sbjct: 1   VFNKLIRRYKYLEKGFEDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLY 60

Query: 89  N------------------------------IWSTVMAQVEWNKKEELVAEQALKHLKQF 118
           N                              +WS+VM+ VEWNKKEELVAEQA+KHLKQ+
Sbjct: 61  NENLVKEGTIIMYVKEEMKKNNISEQIVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQY 120

Query: 119 TPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKE 178
           +PL  AFT T  ++EL L+LK+QE+CY+N++ M+ FQKI++LFYK +V+SEE ILKWYK+
Sbjct: 121 SPLLAAFT-TQGQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKD 179

Query: 179 GHSIKGKIMFLEQMKKFVEWLQSAEEG 205
            H  KGK +FLEQMKKFVEWL++AEEG
Sbjct: 180 AHVAKGKSVFLEQMKKFVEWLKNAEEG 206

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307212973|gb|EFN88555.1| Protein extra bases [Harpegnathos saltator]

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 95/118 (80%), Positives = 108/118 (91%), Gaps = 1/118 (0%)

Query: 85  QVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC 144
           +V+  IW  VM Q EWNKKEELVAEQALKHLK +TPLFGAFT TA R+ELAL+LKVQEFC
Sbjct: 325 EVIGLIWVVVMGQAEWNKKEELVAEQALKHLKIYTPLFGAFTTTA-RSELALILKVQEFC 383

Query: 145 YENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSA 202
           YENMN M+VFQKI+LLFYKTDV+SEEVILKWYKEGHS+KGK++FL+QMKKFVEWLQ+A
Sbjct: 384 YENMNFMKVFQKIVLLFYKTDVVSEEVILKWYKEGHSVKGKMLFLDQMKKFVEWLQNA 441

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184506|gb|EFN70895.1| Protein extra bases [Camponotus floridanus]

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 108/118 (91%), Gaps = 1/118 (0%)

Query: 85  QVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC 144
           +V+  IW  VM Q EWNKKEELVAEQALKHLK +TPLFGAFT TA R+ELAL+LKVQEFC
Sbjct: 293 EVIGLIWVVVMGQAEWNKKEELVAEQALKHLKTYTPLFGAFTTTA-RSELALILKVQEFC 351

Query: 145 YENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSA 202
           YENMN M+VFQKI+LLFYKT+V+SE+VILKWYKEGHS+KGK++FL+QMKKFVEWLQSA
Sbjct: 352 YENMNFMKVFQKIVLLFYKTNVVSEDVILKWYKEGHSVKGKMLFLDQMKKFVEWLQSA 409

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851709|ref|XP_003701374.1| PREDICTED: protein extra bases-like [Megachile rotundata]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/118 (78%), Positives = 108/118 (91%), Gaps = 1/118 (0%)

Query: 85  QVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC 144
           +V+  IW+ VM Q EWNKKEELVA+QALKHLK +TPLF AFT TA R+ELAL+LKVQEFC
Sbjct: 293 EVIGLIWAVVMGQAEWNKKEELVADQALKHLKVYTPLFDAFTTTA-RSELALILKVQEFC 351

Query: 145 YENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSA 202
           YENMN M+VFQKI+LLFYKTDVISEEVILKWYKEGHS+KGK++FL+QMKKF+EWLQ+A
Sbjct: 352 YENMNFMKVFQKIVLLFYKTDVISEEVILKWYKEGHSVKGKMLFLDQMKKFIEWLQNA 409

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789621|gb|EFZ14836.1| hypothetical protein SINV_14753 [Solenopsis invicta]

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/118 (78%), Positives = 108/118 (91%), Gaps = 1/118 (0%)

Query: 85  QVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC 144
           +V+  IW  VM Q EWNKKEELVAEQALKHLK FTPLFGAFT TA R+ELAL+LKVQEFC
Sbjct: 78  EVIGLIWVVVMGQAEWNKKEELVAEQALKHLKTFTPLFGAFTTTA-RSELALILKVQEFC 136

Query: 145 YENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSA 202
           YENMN M+VFQKI+LLFYKT+V+SE+VILKWYKEGHS+KGK++FL+QMKKF+EWLQ+A
Sbjct: 137 YENMNFMKVFQKIVLLFYKTEVVSEDVILKWYKEGHSVKGKMLFLDQMKKFIEWLQNA 194

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425922|ref|XP_003494274.1| PREDICTED: protein extra bases-like [Bombus impatiens]

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 106/118 (89%), Gaps = 1/118 (0%)

Query: 85  QVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC 144
           +V+  IW  VM Q EWNKKEELVA+QALKHLK +TPLF  FT TA R+ELAL+LKVQEFC
Sbjct: 293 EVIGLIWVVVMGQAEWNKKEELVADQALKHLKIYTPLFDVFTTTA-RSELALLLKVQEFC 351

Query: 145 YENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSA 202
           YENMN M+VFQKI+LLFYKTDVISEEVILKWYKEGHS+KGK+MFL+QMKKFVEWLQ+A
Sbjct: 352 YENMNFMKVFQKIVLLFYKTDVISEEVILKWYKEGHSVKGKMMFLDQMKKFVEWLQNA 409

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156538142|ref|XP_001608265.1| PREDICTED: protein extra bases-like [Nasonia vitripennis]

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 89/113 (78%), Positives = 106/113 (93%), Gaps = 1/113 (0%)

Query: 90  IWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMN 149
           IW+ VM Q EWNKKEELVAEQALKHLK +TPLFGAF +TA ++ELAL+LKVQEFCYENMN
Sbjct: 298 IWNVVMGQAEWNKKEELVAEQALKHLKIYTPLFGAFANTA-KSELALILKVQEFCYENMN 356

Query: 150 LMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSA 202
            M+VFQKI+LLFYKTDV+SEEVIL+WYK+GHS+KGK++FL+QMKKF+EWLQ+A
Sbjct: 357 FMKVFQKIVLLFYKTDVVSEEVILRWYKDGHSVKGKMLFLDQMKKFIEWLQNA 409

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726150|ref|XP_003401425.1| PREDICTED: protein extra bases-like [Bombus terrestris]

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 93/118 (78%), Positives = 106/118 (89%), Gaps = 1/118 (0%)

Query: 85  QVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC 144
           +V+  IW  VM Q EWNKKEELVA+QALKHLK +TPLF  FT TA R+ELAL+LKVQEFC
Sbjct: 293 EVIGLIWVVVMGQAEWNKKEELVADQALKHLKIYTPLFDVFTTTA-RSELALLLKVQEFC 351

Query: 145 YENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSA 202
           YENMN M+VFQKI+LLFYKTDVISEEVILKWYKEGHS+KGK+MFL+QMKKF+EWLQ+A
Sbjct: 352 YENMNFMKVFQKIVLLFYKTDVISEEVILKWYKEGHSVKGKMMFLDQMKKFIEWLQNA 409

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|124487980|gb|ABN12073.1| putative eukaryotic initiation factor 5C [Maconellicoccus hirsutus]

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 110/135 (81%), Gaps = 3/135 (2%)

Query: 75  TNGSVPPTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAEL 134
              S+P    +V+I +WS VM+  EWNKKEEL+ EQALKHLKQ+T L  AFT T  R+EL
Sbjct: 81  AKASIPEH--EVVILVWSVVMSHAEWNKKEELLTEQALKHLKQYTMLLAAFT-TTTRSEL 137

Query: 135 ALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKK 194
           ALMLKVQE+CYENMN M+VFQKIILLFYKTD+ISEEVILKWYKE HS KGKIMFL+QMK 
Sbjct: 138 ALMLKVQEYCYENMNFMKVFQKIILLFYKTDIISEEVILKWYKEAHSSKGKIMFLQQMKS 197

Query: 195 FVEWLQSAEEGMSSE 209
           F+EWLQSAEE   S+
Sbjct: 198 FIEWLQSAEEESGSD 212

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110768098|ref|XP_395256.3| PREDICTED: protein extra bases [Apis mellifera]

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 106/118 (89%), Gaps = 1/118 (0%)

Query: 85  QVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC 144
           +V+  IW  VM Q EWNKKEELVA+QALKHLK +TPLF AFT TA R+E AL+LKVQEFC
Sbjct: 293 EVIGLIWLVVMGQAEWNKKEELVADQALKHLKVYTPLFDAFTTTA-RSEHALILKVQEFC 351

Query: 145 YENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSA 202
           YENMN M+VFQKI+LLFYKTDVISEEVILKWYKEGHS+KGK+MFL+QMKKFVEWLQ+A
Sbjct: 352 YENMNFMKVFQKIVLLFYKTDVISEEVILKWYKEGHSVKGKMMFLDQMKKFVEWLQNA 409

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
FB|FBgn0250753	422	exba "extra bases" [Drosophila	0.590	0.293	0.696	2e-75
UNIPROTKB|F1NDS7	421	BZW1 "Basic leucine zipper and	0.590	0.294	0.656	8.7e-65
UNIPROTKB|Q5ZLT7	418	BZW1 "Basic leucine zipper and	0.590	0.296	0.656	8.7e-65
UNIPROTKB|F6V4W0	451	BZW1 "Uncharacterized protein"	0.614	0.286	0.619	8.7e-65
UNIPROTKB|Q7L1Q6	419	BZW1 "Basic leucine zipper and	0.614	0.307	0.619	8.7e-65
UNIPROTKB|F1SI55	419	BZW1 "Uncharacterized protein"	0.614	0.307	0.619	8.7e-65
MGI|MGI:1914132	419	Bzw1 "basic leucine zipper and	0.614	0.307	0.619	8.7e-65
RGD|735129	419	Bzw1 "basic leucine zipper and	0.614	0.307	0.619	8.7e-65
UNIPROTKB|F1MZK4	452	BZW1 "Uncharacterized protein"	0.614	0.285	0.614	7.7e-64
UNIPROTKB|E2QRS7	421	BZW1 "Uncharacterized protein"	0.614	0.306	0.614	7.7e-64

FB|FBgn0250753 exba "extra bases" [Drosophila melanogaster (taxid:7227)]

 Score = 469 (170.2 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
 Identities = 87/125 (69%), Positives = 106/125 (84%)

Query:    85 QVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC 144
             ++++ IWST+M+  EWNKKEELV +QA++HLK + PL  AF  T  R+ELAL+LKVQEFC
Sbjct:   292 EIIVIIWSTIMSLGEWNKKEELVTDQAVRHLKNYCPLLQAFAST-DRSELALILKVQEFC 350

Query:   145 YENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSAEE 204
             YENMN M+ FQKIILLFYKT+V+SEE+IL+WYKEGHS KGK+ FLEQM+KFVEWLQSAEE
Sbjct:   351 YENMNFMKAFQKIILLFYKTEVLSEEIILRWYKEGHSNKGKMHFLEQMRKFVEWLQSAEE 410

Query:   205 GMSSE 209
                SE
Sbjct:   411 ESESE 415

GO:0048663 "neuron fate commitment" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP;TAS

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043022 "ribosome binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0017148 "negative regulation of translation" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0031369 "translation initiation factor binding" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

UNIPROTKB|F1NDS7 BZW1 "Basic leucine zipper and W2 domain-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 445 (161.7 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
 Identities = 82/125 (65%), Positives = 105/125 (84%)

Query:    86 VLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCY 145
             V+  IWS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T  ++EL L+LK+QE+CY
Sbjct:   294 VIAIIWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQGQSELTLLLKIQEYCY 352

Query:   146 ENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSAEEG 205
             +N++ M+ FQKI++LFYK +V+SEE ILKWYK+ H  KGK +FLEQMKKFVEWL++AEE 
Sbjct:   353 DNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHLAKGKSVFLEQMKKFVEWLKNAEEE 412

Query:   206 MSSEA 210
               SEA
Sbjct:   413 SESEA 417

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5ZLT7 BZW1 "Basic leucine zipper and W2 domain-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 445 (161.7 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
 Identities = 82/125 (65%), Positives = 105/125 (84%)

Query:    86 VLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCY 145
             V+  IWS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T  ++EL L+LK+QE+CY
Sbjct:   291 VIAIIWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQGQSELTLLLKIQEYCY 349

Query:   146 ENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSAEEG 205
             +N++ M+ FQKI++LFYK +V+SEE ILKWYK+ H  KGK +FLEQMKKFVEWL++AEE 
Sbjct:   350 DNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHLAKGKSVFLEQMKKFVEWLKNAEEE 409

Query:   206 MSSEA 210
               SEA
Sbjct:   410 SESEA 414

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F6V4W0 BZW1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 445 (161.7 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
 Identities = 83/134 (61%), Positives = 110/134 (82%)

Query:    78 SVP-PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELAL 136
             ++P P V+ +   +WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T  ++EL L
Sbjct:   318 NIPEPVVIGI---VWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQGQSELTL 373

Query:   137 MLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFV 196
             +LK+QE+CY+N++ M+ FQKI++LFYK +V+SEE ILKWYK+ H  KGK +FLEQMKKFV
Sbjct:   374 LLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFV 433

Query:   197 EWLQSAEEGMSSEA 210
             EWL++AEE   SEA
Sbjct:   434 EWLKNAEEESESEA 447

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|Q7L1Q6 BZW1 "Basic leucine zipper and W2 domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 445 (161.7 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
 Identities = 83/134 (61%), Positives = 110/134 (82%)

Query:    78 SVP-PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELAL 136
             ++P P V+ +   +WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T  ++EL L
Sbjct:   286 NIPEPVVIGI---VWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQGQSELTL 341

Query:   137 MLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFV 196
             +LK+QE+CY+N++ M+ FQKI++LFYK +V+SEE ILKWYK+ H  KGK +FLEQMKKFV
Sbjct:   342 LLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFV 401

Query:   197 EWLQSAEEGMSSEA 210
             EWL++AEE   SEA
Sbjct:   402 EWLKNAEEESESEA 415

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1SI55 BZW1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 445 (161.7 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
 Identities = 83/134 (61%), Positives = 110/134 (82%)

Query:    78 SVP-PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELAL 136
             ++P P V+ +   +WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T  ++EL L
Sbjct:   286 NIPEPVVIGI---VWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQGQSELTL 341

Query:   137 MLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFV 196
             +LK+QE+CY+N++ M+ FQKI++LFYK +V+SEE ILKWYK+ H  KGK +FLEQMKKFV
Sbjct:   342 LLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFV 401

Query:   197 EWLQSAEEGMSSEA 210
             EWL++AEE   SEA
Sbjct:   402 EWLKNAEEESESEA 415

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

MGI|MGI:1914132 Bzw1 "basic leucine zipper and W2 domains 1" [Mus musculus (taxid:10090)]

 Score = 445 (161.7 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
 Identities = 83/134 (61%), Positives = 110/134 (82%)

Query:    78 SVP-PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELAL 136
             ++P P V+ +   +WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T  ++EL L
Sbjct:   286 NIPEPVVIGI---VWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQGQSELTL 341

Query:   137 MLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFV 196
             +LK+QE+CY+N++ M+ FQKI++LFYK +V+SEE ILKWYK+ H  KGK +FLEQMKKFV
Sbjct:   342 LLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFV 401

Query:   197 EWLQSAEEGMSSEA 210
             EWL++AEE   SEA
Sbjct:   402 EWLKNAEEESESEA 415

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016070 "RNA metabolic process" evidence=IEA

RGD|735129 Bzw1 "basic leucine zipper and W2 domains 1" [Rattus norvegicus (taxid:10116)]

 Score = 445 (161.7 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
 Identities = 83/134 (61%), Positives = 110/134 (82%)

Query:    78 SVP-PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELAL 136
             ++P P V+ +   +WS+VM+ VEWNKKEELVAEQA+KHLKQ++PL  AFT T  ++EL L
Sbjct:   286 NIPEPVVIGI---VWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFT-TQGQSELTL 341

Query:   137 MLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFV 196
             +LK+QE+CY+N++ M+ FQKI++LFYK +V+SEE ILKWYK+ H  KGK +FLEQMKKFV
Sbjct:   342 LLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFV 401

Query:   197 EWLQSAEEGMSSEA 210
             EWL++AEE   SEA
Sbjct:   402 EWLKNAEEESESEA 415

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1MZK4 BZW1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 436 (158.5 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 83/135 (61%), Positives = 110/135 (81%)

Query:    78 SVP-PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLK-QFTPLFGAFTDTAPRAELA 135
             ++P P V+ +   +WS+VM+ VEWNKKEELVAEQA+KHLK Q++PL  AFT T  ++EL 
Sbjct:   318 NIPEPVVIGI---VWSSVMSTVEWNKKEELVAEQAIKHLKKQYSPLLAAFT-TQGQSELT 373

Query:   136 LMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKF 195
             L+LK+QE+CY+N++ M+ FQKI++LFYK +V+SEE ILKWYK+ H  KGK +FLEQMKKF
Sbjct:   374 LLLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKF 433

Query:   196 VEWLQSAEEGMSSEA 210
             VEWL++AEE   SEA
Sbjct:   434 VEWLKNAEEESESEA 448

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|E2QRS7 BZW1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 436 (158.5 bits), Expect = 7.7e-64, Sum P(2) = 7.7e-64
 Identities = 83/135 (61%), Positives = 110/135 (81%)

Query:    78 SVP-PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLK-QFTPLFGAFTDTAPRAELA 135
             ++P P V+ +   +WS+VM+ VEWNKKEELVAEQA+KHLK Q++PL  AFT T  ++EL 
Sbjct:   287 NIPEPVVIGI---VWSSVMSTVEWNKKEELVAEQAIKHLKKQYSPLLAAFT-TQGQSELT 342

Query:   136 LMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKF 195
             L+LK+QE+CY+N++ M+ FQKI++LFYK +V+SEE ILKWYK+ H  KGK +FLEQMKKF
Sbjct:   343 LLLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKF 402

Query:   196 VEWLQSAEEGMSSEA 210
             VEWL++AEE   SEA
Sbjct:   403 VEWLKNAEEESESEA 417

GO:0016070 "RNA metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CQC6	BZW1_MOUSE	No assigned EC number	0.616	0.5714	0.2863	yes	N/A
Q6PD83	BZW1A_DANRE	No assigned EC number	0.6470	0.5571	0.2792	yes	N/A
Q5ZL42	BZW2_CHICK	No assigned EC number	0.6451	0.5714	0.2898	yes	N/A
Q6P2Z0	BZW1_XENTR	No assigned EC number	0.6470	0.5571	0.2792	yes	N/A
Q5R7L4	BZW1_PONAB	No assigned EC number	0.608	0.5714	0.2863	yes	N/A
Q6P7P5	BZW1_RAT	No assigned EC number	0.616	0.5714	0.2863	yes	N/A
Q9VNE2	EXBA_DROME	No assigned EC number	0.6982	0.5476	0.2725	yes	N/A
Q7L1Q6	BZW1_HUMAN	No assigned EC number	0.616	0.5714	0.2863	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	210
cd11560	194	cd11560, W2_eIF5C_like, C-terminal W2 domain of th	4e-66
pfam02020	75	pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon	1e-21
smart00515	83	smart00515, eIF5C, Domain at the C-termini of GCD6	7e-21
cd11558	169	cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of	7e-16
cd11561	157	cd11561, W2_eIF5, C-terminal W2 domain of eukaryot	1e-12
cd11473	135	cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/	1e-10

>gnl|CDD|211398 cd11560, W2_eIF5C_like, C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins

 Score =  201 bits (514), Expect = 4e-66
 Identities = 74/119 (62%), Positives = 95/119 (79%), Gaps = 1/119 (0%)

Query: 86  VLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCY 145
           V+  +W+ +M  VEW+KKE+ +AEQAL+HLK++ PL  AF  T  RAELAL+ K+QE+CY
Sbjct: 76  VVGLLWTALMDAVEWSKKEDQIAEQALRHLKKYAPLLAAFC-TTARAELALLNKIQEYCY 134

Query: 146 ENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSAEE 204
           ENM  M+VFQKI+ L YK DV+SE+ ILKWYK+GHS KGK +FL+QM+ FVEWLQ AEE
Sbjct: 135 ENMKFMKVFQKIVKLLYKADVLSEDAILKWYKKGHSPKGKQVFLKQMEPFVEWLQEAEE 193

eIF5C appears to be essential for the initiation of protein translation; its actual function, and specifically that of the C-terminal W2 domain, are not well understood. The Drosophila ortholog, kra (krasavietz) or exba (extra bases), may be involved in translational inhibition in neural development. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats. Length = 194

>gnl|CDD|216850 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon

 Score = 83.8 bits (208), Expect = 1e-21
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 131 RAELALMLKVQEFCY-ENMNLMRVFQKIILLFYKTDVISEEVILKWYKE--GHSIKGKIM 187
            A+  L+  ++ FC  EN  L+++  KI+ L Y  D++ EE ILKWY++      +G   
Sbjct: 1   DAQKDLLGALERFCGKENPELIKLLPKILKLLYDLDILEEEAILKWYEKSKKVDGEGSKK 60

Query: 188 FLEQMKKFVEWLQSA 202
             +Q K FV WL+ A
Sbjct: 61  VRKQAKPFVTWLEEA 75

This domain of unknown function is found at the C-terminus of several translation initiation factors. Length = 75

>gnl|CDD|214705 smart00515, eIF5C, Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5

 Score = 82.3 bits (204), Expect = 7e-21
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 120 PLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEG 179
           PL   F       +L L+  ++EFC E   L ++  KI+   Y  D++ EE ILKWY++ 
Sbjct: 2   PLL-KFLAKDEEEQLELLYAIEEFCVELEKLGKLLPKILKSLYDADILEEEAILKWYEKA 60

Query: 180 HSIKGKIMFLEQMKKFVEWLQSA 202
            S +GK    +  K FV WLQ A
Sbjct: 61  VSAEGKKKVRKNAKPFVTWLQEA 83

Length = 83

>gnl|CDD|211396 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon

 Score = 71.5 bits (176), Expect = 7e-16
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 108 AEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVI 167
            E   K L ++ PL   +  +    ++ L+L ++EFC E+     +F K++   Y  D++
Sbjct: 69  LEALKKLLSKWGPLLENYVKSQ-DDQVELLLALEEFCLESEEGGPLFAKLLHALYDLDIL 127

Query: 168 SEEVILKWYKEGHSIKGKIM--FLEQMKKFVEWLQSAEE 204
            EE IL+W++E  +   + M    E +KKF+EWL+ AEE
Sbjct: 128 EEEAILEWWEEPDAGADEEMKKVRELVKKFIEWLEEAEE 166

eIF2B is a heteropentameric complex which functions as a guanine nucleotide exchange factor in the recycling of eIF-2 during the initiation of translation in eukaryotes. The epsilon and gamma subunits are sequence similar and both are essential in yeast. Epsilon appears to be the catalytically active subunit, with gamma enhancing its activity. The C-terminal domain of the eIF2B epsilon subunit contains bipartite motifs rich in acidic and aromatic residues, which are responsible for the interaction with eIF2. The structure of the domain resembles that of a set of concatenated HEAT repeats. Length = 169

>gnl|CDD|211399 cd11561, W2_eIF5, C-terminal W2 domain of eukaryotic translation initiation factor 5

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 104 EELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYE-NMNLMRVFQKIILLFY 162
           E L  E  +K +K+   L      T  +A+ AL+  ++ FC + +  L++    I+   Y
Sbjct: 50  EVLFDENIVKEIKKRKALLLKLV-TDEKAQKALLGGIERFCGKHSPELLKKVPLILKALY 108

Query: 163 KTDVISEEVILKWYKEGH----SIKGKIMFLEQMKKFVEWLQSAEE 204
             D++ EEVILKWY++      S +      +  + FVEWL+ AEE
Sbjct: 109 DNDILEEEVILKWYEKVSKKYVSKEKSKKVRKAAEPFVEWLEEAEE 154

eIF5 functions as a GTPase acceleration protein (GAP), as well as a GDP dissociation inhibitor (GDI) during translational initiation in eukaryotes. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats. Length = 157

>gnl|CDD|211395 cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 90  IWSTVMAQVEWNK-KEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENM 148
           + + V+  VE          EQ +  LK++ P+         + +L L+LK+++ C +  
Sbjct: 46  LLTAVVNAVESADSISLTQKEQLVLVLKKYGPVLRELLKLIKKDQLYLLLKIEKLCLQLK 105

Query: 149 N--LMRVFQKIILLFYKTDVISEEVILKWY 176
              L+ + +KI+ L Y  DV+SEE IL W+
Sbjct: 106 LSELISLLEKILDLLYDADVLSEEAILSWF 135

This domain is found at the C-terminus of several translation initiation factors, including the epsilon chain of eIF2b, where it has been found to catalyze the conversion of eIF2.GDP to its active eIF2.GTP form. The structure of the domain resembles that of a set of concatenated HEAT repeats. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
KOG2297|consensus	412		100.0
KOG1461|consensus	673		99.97
PF02020	84	W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003	99.93
smart00515	83	eIF5C Domain at the C-termini of GCD6, eIF-2B epsi	99.91
KOG2767|consensus	400		99.86
PF09090	253	MIF4G_like_2: MIF4G like; InterPro: IPR015174 This	96.17

>KOG2297|consensus

Probab=100.00  E-value=4.9e-58  Score=397.51  Aligned_cols=200  Identities=63%  Similarity=1.054  Sum_probs=195.8

Q ss_pred             CCCCcceecccccHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhHHHhcCCCchhHHHH
Q psy3925           7 VQTTACIFEAQEDMQSLKNFEQVFIKLMRRYKYLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQV   86 (210)
Q Consensus         7 ~~~~~~v~~~~~~~~~i~~~~~v~~kl~rr~~~l~k~~ee~~~~~l~~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~a   86 (210)
                      .||+||||+|++++|+|++|+|||+|||||||||+|.||++|.++|.|+++|++..|+++|.++||.+|+|.+|+.|+.+
T Consensus        91 ~~t~~cvfda~e~~E~i~~~~qvf~KliRRykyLeK~fE~e~~k~Llflk~F~e~Er~KLA~~Tal~l~nGt~~~tvl~~  170 (412)
T KOG2297|consen   91 RHTSYCVFDAEEKREAIRNSVQVFQKLIRRYKYLEKNFENEMRKFLLFLKLFEENERKKLAMLTALLLSNGTLPATVLQS  170 (412)
T ss_pred             ccCceeEeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-----------------------------------------------------------------------------
Q psy3925          87 LIN-----------------------------------------------------------------------------   89 (210)
Q Consensus        87 l~~-----------------------------------------------------------------------------   89 (210)
                      ++|                                                                             
T Consensus       171 L~~d~LVkeGi~l~F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmeffPpnkrs~E~Fak~Ft~agL~elvey~~~q~~  250 (412)
T KOG2297|consen  171 LLNDNLVKEGIALSFAVKLFKEWLVEKDINDLISSLRKGKMDDRLMEFFPPNKRSVEHFAKYFTDAGLKELVEYHRNQQS  250 (412)
T ss_pred             HHHhhHHHHhHHHHHHHHHHHHHHhhccHHHHHHHHHhcChHhHHHHhcCCcchhHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence            988                                                                             


Q ss_pred             ---------------------------------------------HHHHHHhhhhhcchhhhHHHHHHHHHhhHHHHHHH
Q psy3925          90 ---------------------------------------------IWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGA  124 (210)
Q Consensus        90 ---------------------------------------------i~~a~m~~v~~~~~~~l~~~~~~~~l~~~~~ll~~  124 (210)
                                                                   +|+++|+.++||+++++.++++.++++.|+|||..
T Consensus       251 ~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~yaPLL~a  330 (412)
T KOG2297|consen  251 EGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAA  330 (412)
T ss_pred             HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHH
Confidence                                                         89999999999999999999999999999999999


Q ss_pred             hccCCcHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCCCchhHHHHHHHHHHHHHHHccCCC
Q psy3925         125 FTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEWLQSAEE  204 (210)
Q Consensus       125 ~~~~~~~~Q~~lL~alq~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~~~~~~~~~~~~~~~FIeWL~eAEE  204 (210)
                      ||++ +..++.+|+.+|.|||++..+|+.|+.|+..||..||++||.|++||++++.++|+++|.++++|||+||++|||
T Consensus       331 f~s~-g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~FleqmkkFVeWL~~AEE  409 (412)
T KOG2297|consen  331 FCSQ-GQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQMKKFVEWLQNAEE  409 (412)
T ss_pred             HhcC-ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhhh
Confidence            9999 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy3925         205 GMS  207 (210)
Q Consensus       205 Esd  207 (210)
                      ||+
T Consensus       410 EsE  412 (412)
T KOG2297|consen  410 ESE  412 (412)
T ss_pred             ccC
Confidence            975

>KOG1461|consensus

Probab=99.97  E-value=1.7e-30  Score=241.95  Aligned_cols=167  Identities=22%  Similarity=0.391  Sum_probs=148.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhHHHhcCCCchhHHHHHHHHHHHHHhhhh---hcchhhhHHHHH
Q psy3925          35 RRYKYLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVE---WNKKEELVAEQA  111 (210)
Q Consensus        35 rr~~~l~k~~ee~~~~~l~~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~al~~i~~a~m~~v~---~~~~~~l~~~~~  111 (210)
                      ..+++|+|++.++|++.+.  ++.  ..|++++|+|+||||+|++.++|++|+   +.++|+.+.   .++..+ +..++
T Consensus       503 ~d~~~F~~Ev~~s~~ra~E--en~--~~D~~vlEINslRla~N~s~~ev~~av---~~all~~~~~~~~~~~~~-~~~~~  574 (673)
T KOG1461|consen  503 DDTKDFEKEVLGSLQRAFE--ENS--DMDNLVLEINSLRLAYNVSLKEVAGAV---FMALLKLILHQDHSSMNE-VKRAA  574 (673)
T ss_pred             chhHHHHHHHHHHHHHHHH--hcc--chHHHHHHHhhhHHhhcCCHHHHHHHH---HHHHHHHHhcCCCccchh-HHHHH
Confidence            4899999999999999985  443  459999999999999999999999999   999999983   333223 45688


Q ss_pred             HHHHhhHHHHHHHhccCCcHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCCCch-hHHHHHH
Q psy3925         112 LKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIK-GKIMFLE  190 (210)
Q Consensus       112 ~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~~~~-~~~~~~~  190 (210)
                      .+++++|+|++.+|+++ .+.|+++|.+||++|.++..+.+.+.++++.||+.|||+|++|++||...+... ..++.+.
T Consensus       575 ~~~~~~w~~l~~~y~ks-~deqid~l~~led~~~e~~~~~~~~~~~v~~lY~~dil~EdaI~~W~~~~~~~~~~~~~~~~  653 (673)
T KOG1461|consen  575 LKVFTQWGPLLGNYIKS-EDEQIDLLLALEDKCVESEELGPKAAKLVHYLYDYDILQEDAILSWSSQKAGDDEEDAVYNQ  653 (673)
T ss_pred             HHHHHHhhHHhhhhhhh-HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhHhhHHHHHHhhhccccchHHHHHHHH
Confidence            89999999999999999 999999999999999999888899999999999999999999999998844443 3468899


Q ss_pred             HHHHHHHHHccCCCCCCCCC
Q psy3925         191 QMKKFVEWLQSAEEGMSSEA  210 (210)
Q Consensus       191 ~~~~FIeWL~eAEEEsdeed  210 (210)
                      ++++||+||++|+||||+||
T Consensus       654 ~~k~fv~WL~easeE~~~ee  673 (673)
T KOG1461|consen  654 QLKKFVDWLKEASEEEESEE  673 (673)
T ss_pred             HHHHHHHHHhhcccccccCC
Confidence            99999999999999999886

>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []

Probab=99.93  E-value=9.2e-26  Score=164.12  Aligned_cols=80  Identities=38%  Similarity=0.737  Sum_probs=65.9

Q ss_pred             HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCC---CchhHHHHHHHHHHHHHHHccCCCCCC
Q psy3925         131 RAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGH---SIKGKIMFLEQMKKFVEWLQSAEEGMS  207 (210)
Q Consensus       131 ~~Q~~lL~alq~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~---~~~~~~~~~~~~~~FIeWL~eAEEEsd  207 (210)
                      ++|+++|.++|.+|.+++.+++.|++||+.|||.|||+|++|++||++..   .+++++++|++++|||+||++||||||
T Consensus         2 ~~Q~~~L~ale~~~~~~~~~~~~~~~il~~LYd~Dil~Eeail~W~~~~~~~~~~~~~~~~r~~~~~fi~WL~eaeeE~~   81 (84)
T PF02020_consen    2 DDQVDLLNALEEFCAENPNLMPLFPKILQQLYDEDILEEEAILEWYEDSKPAVDGEGRAKVRKQAQPFIEWLEEAEEESD   81 (84)
T ss_dssp             HHHHHHHHHHHHHHHHTCGHGGHHHHHHHHHHHTTSS-HHHHHHHHHC-SSSSCHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhhhhccHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhccCccCC
Confidence            68999999999999999999999999999999999999999999999822   234678899999999999999999999


Q ss_pred             CCC
Q psy3925         208 SEA  210 (210)
Q Consensus       208 eed  210 (210)
                      +||
T Consensus        82 eed   84 (84)
T PF02020_consen   82 EED   84 (84)
T ss_dssp             ---
T ss_pred             CCC
Confidence            886

The W2 domain has a globular fold and is exclusively composed out of alpha-helices [, , ]. The structure can be divided into a structural C-terminal core onto which the two N-terminal helices are attached. The core contains two aromatic/acidic residue-rich regions (AA boxes), which are important for mediating protein-protein interactions. For example, the W2 domain of H. sapiens eIF5 binds eIF2-beta, eIF3 and eIF1 [], and therefore plays an important role in multifactor complex assembly. The entry covers the entire W2 domain.; GO: 0005488 binding; PDB: 3D3M_A 3L6A_A 1PAQ_A 2FUL_D 2IU1_A 1UG3_B 3JUI_A.

>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5

Probab=99.91  E-value=3.5e-24  Score=155.28  Aligned_cols=83  Identities=35%  Similarity=0.699  Sum_probs=77.2

Q ss_pred             HHHHHHhccCCcHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Q psy3925         119 TPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVEW  198 (210)
Q Consensus       119 ~~ll~~~~~~~~~~Q~~lL~alq~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~~~~~~~~~~~~~~~FIeW  198 (210)
                      +|+|.+++++ .++|+++|.++|.+|.+++.+.+.|+.|++.|||.|||+||+|++||+++++++++++++++++|||+|
T Consensus         1 ~~ll~~~~~~-~~~q~~~L~ale~~~~~~~~~~~~~~~il~~LYd~dileEe~il~W~~~~~~~~~~~~~~~~~~~fv~W   79 (83)
T smart00515        1 GPLLKFLAKD-EEEQIDLLYAIEEFCVELEKLIKLLPKILKSLYDADILEEEAILKWYEKAVSAEGKKKVRKNAKPFVTW   79 (83)
T ss_pred             ChHHHHHHCC-hHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhhccccHHHHHHHHHcCCChHHHHHHHHHHhHHHHH
Confidence            4789999998 899999999999999987668899999999999999999999999999987666889999999999999


Q ss_pred             HccC
Q psy3925         199 LQSA  202 (210)
Q Consensus       199 L~eA  202 (210)
                      |++|
T Consensus        80 L~eA   83 (83)
T smart00515       80 LQEA   83 (83)
T ss_pred             HHcC
Confidence            9986

>KOG2767|consensus

Probab=99.86  E-value=2.1e-20  Score=164.33  Aligned_cols=169  Identities=25%  Similarity=0.347  Sum_probs=124.9

Q ss_pred             HHhHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHhcCChhH------HHHHHHHhhHHHhcCCCchhHHHHHHHHH
Q psy3925          21 QSLKNFEQVFI---KLMRRYKYLEKMFDEEMKKVLVFIKGFNETE------RIKLARMTALWITNGSVPPTVLQVLINIW   91 (210)
Q Consensus        21 ~~i~~~~~v~~---kl~rr~~~l~k~~ee~~~~~l~~l~~~~~~~------~~~llEl~~Lrms~n~~~~~v~~al~~i~   91 (210)
                      ++++..+|-+.   +-+--..++++.=++....+.++.+...++.      ...+.++..|-+.+ ..|...+       
T Consensus       214 ea~r~R~~~Ls~~~~~~~~~sd~e~~E~~~~~~~~d~~~~~~~en~~~~~~kEi~~~a~~l~i~~-k~p~vl~-------  285 (400)
T KOG2767|consen  214 EAIRARMQELSANAKEMLLLSDLEKSEEEREDILYDFVKKKKEENVPDKSDKEIVKEAERLDIKN-KAPLVLA-------  285 (400)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHhhhhcccccCCCccHHHHHHHHHHHhhcc-cchHHHH-------
Confidence            56666666332   3333457788876777788887777766422      12233333222222 1111111       


Q ss_pred             HHHHhhhhhcchhhhHHHHHHHHHhhHHHHHHHhccCCcHhHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhhccCCChH
Q psy3925          92 STVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYEN-MNLMRVFQKIILLFYKTDVISEE  170 (210)
Q Consensus        92 ~a~m~~v~~~~~~~l~~~~~~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq~~c~~~-~~~~~~f~~Il~~LYd~DIleEe  170 (210)
                                  +.||.+.+.+.|.+++++|.+||.++.+.|..||.+|+++|..+ ..+++..+.||+.|||+||++|+
T Consensus       286 ------------~~Lf~e~ivkei~k~~~~l~k~~~~~~k~qr~LLggiE~~~~~~~~el~~kva~ilk~lYd~DI~~e~  353 (400)
T KOG2767|consen  286 ------------EVLFDEKIVKEILKHRALLLKFCTNNEKAQRYLLGGIERFVEKHEAELISKVAGILKELYDEDILEEE  353 (400)
T ss_pred             ------------HHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhHH
Confidence                        23567788899999999999999987889999999999999874 78899999999999999999999


Q ss_pred             HHHHHhhcCCC---chh-HHHHHHHHHHHHHHHccCCCCCCCC
Q psy3925         171 VILKWYKEGHS---IKG-KIMFLEQMKKFVEWLQSAEEGMSSE  209 (210)
Q Consensus       171 ~Il~W~~~~~~---~~~-~~~~~~~~~~FIeWL~eAEEEsdee  209 (210)
                      +|++|+.++++   ++. .+.+++.++|||+||++||+|+++|
T Consensus       354 vi~~w~~K~skk~vsk~~sk~i~e~a~Pfi~WL~~AESe~eeE  396 (400)
T KOG2767|consen  354 VIIKWGEKPSKKYVSKEKSKKIRENAKPFIEWLKNAESEDEEE  396 (400)
T ss_pred             HHHHHHhcccccccchhhhhhhHhhhhHHHHHHHhcccccccc
Confidence            99999999885   343 4689999999999999998776655

>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain

Probab=96.17  E-value=0.12  Score=44.71  Aligned_cols=119  Identities=16%  Similarity=0.201  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHhhHHHh---cCCCchh-HHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHhhHHHH
Q psy3925          46 EEMKKVLVFIKGFNETERIKLARMTALWIT---NGSVPPT-VLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPL  121 (210)
Q Consensus        46 e~~~~~l~~l~~~~~~~~~~llEl~~Lrms---~n~~~~~-v~~al~~i~~a~m~~v~~~~~~~l~~~~~~~~l~~~~~l  121 (210)
                      +...++++++++.. +.+....-++.+.-.   .|..+.. ++..+   +++++-.+   ++.  +. -+...|++|++.
T Consensus        12 ~~a~~l~~~ir~k~-~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~---~q~ll~~G---SkS--~S-H~~~~lery~~~   81 (253)
T PF09090_consen   12 ALAQKLLDLIRKKA-PPEEISELLEEIEEPAEEHGSDFDKFVIDVF---VQCLLHIG---SKS--FS-HVLSALERYKEV   81 (253)
T ss_dssp             HHHHHHHHHHHTT---HHHHHHHHTTS------------HHHHHHH---HHHHHHHT---TTS--HH-HHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHhccccccccccchhhHHHHHH---HHHHHHhc---Cch--HH-HHHHHHHHHHHH
Confidence            44577888888865 444444444433322   2221111 22222   55555332   221  23 244589999999


Q ss_pred             HHHh-ccCCcHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhc
Q psy3925         122 FGAF-TDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKE  178 (210)
Q Consensus       122 l~~~-~~~~~~~Q~~lL~alq~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~  178 (210)
                      |+.+ +.+ ...|..+|.++-.+...+|..   ..-|+..|-..+||+-.+|+.|-=+
T Consensus        82 Lk~l~~~~-~~~q~~il~~v~~~W~~~~q~---~~li~dkll~~~ii~~~~Vv~w~f~  135 (253)
T PF09090_consen   82 LKELEAES-EEAQFWILDAVFRFWKNNPQM---GFLIIDKLLNYGIISPSAVVNWVFS  135 (253)
T ss_dssp             HHHH-TSS-HHHHHHHHHHHHHHHTT-HHH---HHHHHHHHHHTTSS-HHHHHHHHTS
T ss_pred             HHHhccCC-hHHHHHHHHHHHHHHhcCCce---ehHHHHHHHhcCCCCHHHHHHHHcC
Confidence            9999 776 889999999999999888874   4678889999999999999999843

MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
3jui_A	182	Translation initiation factor EIF-2B subunit EPSI;	6e-26
1paq_A	189	Translation initiation factor EIF-2B epsilon subun	4e-23
3d3m_A	168	Eukaryotic translation initiation factor 4 gamma 2	9e-23
3l6a_A	364	Eukaryotic translation initiation factor 4 gamma;	2e-22
2iu1_A	208	EIF5, eukaryotic translation initiation factor 5;	1e-21
2ful_A	177	EIF-5, eukaryotic translation initiation factor 5;	2e-20
1ug3_A	339	EIF4GI, eukaryotic protein synthesis initiation fa	4e-12
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	8e-05

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} Length = 182

 Score = 97.8 bits (243), Expect = 6e-26
 Identities = 27/134 (20%), Positives = 64/134 (47%), Gaps = 7/134 (5%)

Query: 82  TVLQVLINIWSTVMAQVEWNKKEELVA----EQALKHLKQFTPLFGAFTDTAPRAELALM 137
           ++ +V+  +   V+          L +       L  LK ++P+F  +        L  +
Sbjct: 49  SLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKR-AADHLEAL 107

Query: 138 LKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSI--KGKIMFLEQMKKF 195
             +++F  E+  L     K+++ FY+ ++++ E IL W+ +  +     ++   +Q+++F
Sbjct: 108 AAIEDFFLEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLRKNQQLQRF 167

Query: 196 VEWLQSAEEGMSSE 209
           ++WL+ AEE  S +
Sbjct: 168 IQWLKEAEEESSED 181

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Length = 189

 Score = 90.8 bits (225), Expect = 4e-23
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)

Query: 82  TVLQVLINIWSTVMAQVEWNKKEELVA--EQALKHLKQFTPLFGAFTDTAPRAELALMLK 139
           T  +V I   + ++ +V      + +   +  +K   Q+  LF           + LM  
Sbjct: 57  TYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLFKRQAFD-EEEYIDLMNI 115

Query: 140 VQEFCYENMN--LMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVE 197
           + E   E        +    ++  Y  D+I E+VI KW+    +        +   K+VE
Sbjct: 116 IMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKWVE 175

Query: 198 WLQSAEE 204
           WLQ+A+E
Sbjct: 176 WLQNADE 182

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Length = 168

 Score = 89.4 bits (221), Expect = 9e-23
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)

Query: 87  LINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYE 146
            +N  S          KE+L  E+ L  L  F P+   F       +++ +  +Q  CY 
Sbjct: 54  EVNPPSDETDSSSAPSKEQLEQEKQL--LLSFKPVMQKFLHDHVDLQVSALYALQVHCYN 111

Query: 147 NMNLMRVFQKIILLFYKTDVISEEVILKWYKE-GHSIKGKIMFLEQMKKFVEWLQSA 202
           +     +  +  + FY  ++I EE  L W ++      GK   L Q+ +++ WL++A
Sbjct: 112 SNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETA 168

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364

 Score = 92.3 bits (228), Expect = 2e-22
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 1/142 (0%)

Query: 62  ERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPL 121
           + I           N  +   +  +   +          +   +   EQ  + L  F P+
Sbjct: 223 DNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPV 282

Query: 122 FGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEG-H 180
              F       +++ +  +Q  CY +     +  +  + FY  ++I EE  L W ++   
Sbjct: 283 MQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQ 342

Query: 181 SIKGKIMFLEQMKKFVEWLQSA 202
              GK   L Q+ +++ WL++A
Sbjct: 343 EFPGKGKALFQVNQWLTWLETA 364

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Length = 208

 Score = 87.5 bits (216), Expect = 1e-21
 Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 104 EELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC-YENMNLMRVFQKIILLFY 162
           E L  E+  + +K++   F  F     +A+  L+  ++         L+     I+   Y
Sbjct: 51  EVLFNEKIREQIKKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMY 110

Query: 163 KTDVISEEVILKWYKEGHSIKGKIM----FLEQMKKFVEWLQSAEEGMSSE 209
             D++ EEVI+ W ++                + + F++WL+ AEE  S  
Sbjct: 111 DADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAEEESSGG 161

>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae} Length = 177

 Score = 83.2 bits (205), Expect = 2e-20
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 104 EELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC-YENMNLMRVFQKIILLFY 162
           + L  E  +  + +    F     T P  E   M  ++ F   E+ +L+ +  KI++  Y
Sbjct: 58  QCLFDEDIVNEIAEHNAFFTKILVT-PEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLY 116

Query: 163 KTDVISEEVILKWYKEGH----SIKGKIMFLEQMKKFVEWLQSAEE 204
             D+ISEE I+++  +        +         K F+ WL++AE 
Sbjct: 117 NNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAES 162

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339

 Score = 62.9 bits (152), Expect = 4e-12
 Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 1/89 (1%)

Query: 90  IWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMN 149
           + + + A        E      +  LK    L   +     + EL  +  +Q        
Sbjct: 247 VRALMTAVCYSAIIFETPLRVDVAVLKARAKLLQKYLCD-EQKELQALYALQALVVTLEQ 305

Query: 150 LMRVFQKIILLFYKTDVISEEVILKWYKE 178
              + +      Y  DV+ E+    W   
Sbjct: 306 PPNLLRMFFDALYDEDVVKEDAFYSWESS 334

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.7 bits (94), Expect = 8e-05
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 14/37 (37%)

Query: 109 EQALKH----LKQFTPLFGAFTDTAPRAELALMLKVQ 141
           +QALK     LK +        D+AP    AL +K  
Sbjct: 19  KQALKKLQASLKLYAD------DSAP----ALAIKAT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
3jui_A	182	Translation initiation factor EIF-2B subunit EPSI;	100.0
1paq_A	189	Translation initiation factor EIF-2B epsilon subun	100.0
3d3m_A	168	Eukaryotic translation initiation factor 4 gamma 2	99.96
2ful_A	177	EIF-5, eukaryotic translation initiation factor 5;	99.95
2iu1_A	208	EIF5, eukaryotic translation initiation factor 5;	99.94
3l6a_A	364	Eukaryotic translation initiation factor 4 gamma;	99.89
1ug3_A	339	EIF4GI, eukaryotic protein synthesis initiation fa	99.74
1h2v_C	771	80 kDa nuclear CAP binding protein; CAP-binding-co	96.65

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0

Probab=100.00  E-value=3.6e-40  Score=270.50  Aligned_cols=169  Identities=20%  Similarity=0.342  Sum_probs=141.2

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhHHHhcCCCchhHHHHHHHHHHHHHhhhh--hcc--hhhhHHH
Q psy3925          34 MRRYKYLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVE--WNK--KEELVAE  109 (210)
Q Consensus        34 ~rr~~~l~k~~ee~~~~~l~~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~al~~i~~a~m~~v~--~~~--~~~l~~~  109 (210)
                      |.+-|-|++++.+++.+.+.   ..+ +.+++++|+||||||+|++.++|++++   |.|+|+++.  +++  .+....+
T Consensus         8 ~~~~~~F~~Ev~~sl~ra~~---e~~-~~d~~~LEinslr~a~N~s~~eV~~av---~~ail~~~~~~~~~~~~~~~~~~   80 (182)
T 3jui_A            8 MDDIKVFQNEVLGTLQRGKE---ENI-SCDNLVLEINSLKYAYNISLKEVMQVL---SHVVLEFPLQQMDSPLDSSRYCA   80 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---HTC-CHHHHHHHHHHHHHHTTCCHHHHHHHH---HHHHHHGGGGGCCSSCCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHH---cCC-CHHHHHHHHHHHHHHhCcCHHHHHHHH---HHHHHHHHHHhcccccChhhHHH
Confidence            45566788888888877764   434 669999999999999999999999999   999999973  343  2334567


Q ss_pred             HHHHHHhhHHHHHHHhccCCcHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCCCc-hhHH-H
Q psy3925         110 QALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSI-KGKI-M  187 (210)
Q Consensus       110 ~~~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~~~-~~~~-~  187 (210)
                      ++.++|++|+|+|.+|+++ .+.|+++|.++|.+|++++.+++.|+.||+.|||.|||+||+|++||+++++. +|++ .
T Consensus        81 a~~~~i~~~~~ll~~~~~~-~~~q~~lL~ale~~~~~~~~~~~~~~~il~~LYd~DileEe~Il~W~~~~~~~~~~~~~~  159 (182)
T 3jui_A           81 LLLPLLKAWSPVFRNYIKR-AADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLR  159 (182)
T ss_dssp             HHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHTCCC--CHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhcchhchHHHHHHHHcCCccccchHHH
Confidence            8899999999999999998 89999999999999999999999999999999999999999999999987754 3544 6


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCC
Q psy3925         188 FLEQMKKFVEWLQSAEEGMSSEA  210 (210)
Q Consensus       188 ~~~~~~~FIeWL~eAEEEsdeed  210 (210)
                      +|++++|||+||++|||||||||
T Consensus       160 vr~~~~~Fi~WL~eAEEEs~ee~  182 (182)
T 3jui_A          160 KNQQLQRFIQWLKEAEEESSEDD  182 (182)
T ss_dssp             TCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHhccCcccCCCC
Confidence            88999999999999999999886

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14

Probab=100.00  E-value=1.1e-38  Score=263.14  Aligned_cols=164  Identities=20%  Similarity=0.236  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhHHHhcCCCchhHHHHHHHHHHHHHhhh-hhcchhhh-HHHHHHHHHh
Q psy3925          39 YLEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQV-EWNKKEEL-VAEQALKHLK  116 (210)
Q Consensus        39 ~l~k~~ee~~~~~l~~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~al~~i~~a~m~~v-~~~~~~~l-~~~~~~~~l~  116 (210)
                      .|.+++.+++.+.+   +..+ +.+++++|+|+||+|+|++.++|++++   |.++|+++ +|++++.+ ..+++.++|+
T Consensus        21 ~F~~Ev~~sL~r~~---~e~~-~~d~iilEin~lr~a~n~s~~ev~~~v---~~a~l~~~~~~~~~~~~~~~~~~~~~l~   93 (189)
T 1paq_A           21 DFEKEGIATVERAM---ENNH-DLDTALLELNTLRMSMNVTYHEVRIAT---ITALLRRVYHFIATQTLGPKDAVVKVFN   93 (189)
T ss_dssp             CHHHHHHHHHHHHH---HTTC-CHHHHHHHHHHHHHHTTCCHHHHHHHH---HHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HcCC-CHHHHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHhcccccccHHHHHHHHHH
Confidence            57888888887776   3444 569999999999999999999999999   99999998 66655444 5678889999


Q ss_pred             hHHHHHHHhccCCcHhHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCCCchhHHHHHHHHHH
Q psy3925         117 QFTPLFGAFTDTAPRAELALMLKVQEFCY--ENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKK  194 (210)
Q Consensus       117 ~~~~ll~~~~~~~~~~Q~~lL~alq~~c~--~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~~~~~~~~~~~~~~~  194 (210)
                      +|+|+|.+|+++ .+.|+++|.++|.+|+  ++|.+++.|++||+.|||.|||+||+|++||++++.+++..+++++++|
T Consensus        94 ~~~~ll~~~~~~-~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~~~~~~~~~~v~~~~~~  172 (189)
T 1paq_A           94 QWGLLFKRQAFD-EEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVK  172 (189)
T ss_dssp             HHGGGGGGTCCS-HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-cHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            999999999988 9999999999999999  7899999999999999999999999999999987644333488999999


Q ss_pred             HHHHHccCCCCCCCCC
Q psy3925         195 FVEWLQSAEEGMSSEA  210 (210)
Q Consensus       195 FIeWL~eAEEEsdeed  210 (210)
                      ||+||++|||||||||
T Consensus       173 Fi~WL~eAEeEs~~ee  188 (189)
T 1paq_A          173 WVEWLQNADEESSSEE  188 (189)
T ss_dssp             HHHHHHHTC-------
T ss_pred             HHHHHhccCccccccC
Confidence            9999999999887765

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}

Probab=99.96  E-value=1.7e-28  Score=198.60  Aligned_cols=147  Identities=21%  Similarity=0.381  Sum_probs=119.1

Q ss_pred             HHHHHHHHH--HHHHHHHHhcCChhHHHHHHHHhhHHHhcCCCchhHHHHHHHHHHHHHhhhhh--cc-hhh--h-----
Q psy3925          39 YLEKMFDEE--MKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVEW--NK-KEE--L-----  106 (210)
Q Consensus        39 ~l~k~~ee~--~~~~l~~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~al~~i~~a~m~~v~~--~~-~~~--l-----  106 (210)
                      -|.+.+.+.  ...+++.++.+.. .++             .++++|++++   |+++|+++.+  ++ +..  +     
T Consensus         7 ~L~~~l~~~~~~~~i~~~i~en~~-~~~-------------~s~~ev~~al---~~avl~~i~~~~~~~~~~~d~~~~~~   69 (168)
T 3d3m_A            7 ELLKQIKLDPSPQTIYKWIKDNIS-PKL-------------HVDKGFVNIL---MTSFLQYISSEVNPPSDETDSSSAPS   69 (168)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHSC-GGG-------------GGCHHHHHHH---HHHHHHHHHHHHSCCC-------CCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHhcCC-ccc-------------CCHHHHHHHH---HHHHHHHHHHhccccccccccccccc
Confidence            344444442  6677777776653 222             3899999999   9999999865  22 211  1     


Q ss_pred             --HHHHHHHHHhhHHHHHHHhccCCcHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCCC-ch
Q psy3925         107 --VAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHS-IK  183 (210)
Q Consensus       107 --~~~~~~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~~-~~  183 (210)
                        ..+++.++|++|+|+|.+|++++.+.|+++|+++|.+|++++.+++.|+.|++.|||.|||+||+|++||+++++ .+
T Consensus        70 k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~lL~alq~~~~~~~~~~~~~~~il~~LYd~DvleEe~il~W~~~~~~~~~  149 (168)
T 3d3m_A           70 KEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFP  149 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCSCCCT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhcchhhHHHHHHHHhCCcchhh
Confidence              235788899999999999998547899999999999999988889999999999999999999999999998753 45


Q ss_pred             hHHHHHHHHHHHHHHHccC
Q psy3925         184 GKIMFLEQMKKFVEWLQSA  202 (210)
Q Consensus       184 ~~~~~~~~~~~FIeWL~eA  202 (210)
                      |+.+++++++|||+||+||
T Consensus       150 ~~~~~~~~~~~Fi~WL~eA  168 (168)
T 3d3m_A          150 GKGKALFQVNQWLTWLETA  168 (168)
T ss_dssp             THHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            7889999999999999987

>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.4e-29  Score=202.04  Aligned_cols=113  Identities=25%  Similarity=0.418  Sum_probs=94.3

Q ss_pred             hhHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHhhHHHHHHHhccCCcHhHHHHHHHHHHHHH-hhhhhHHHHHHHHH
Q psy3925          81 PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCY-ENMNLMRVFQKIIL  159 (210)
Q Consensus        81 ~~v~~al~~i~~a~m~~v~~~~~~~l~~~~~~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq~~c~-~~~~~~~~f~~Il~  159 (210)
                      +.+..++   |.++|+            +++.++|++|+|+|.+|+++ .+.|+++|.+||.+|. +++.+++.|++||+
T Consensus        50 ~~~~~vl---~~~lf~------------~~i~~~l~k~~~lL~~~~~~-~~~q~~lL~ale~~~~~~~~~~~~~~~~IL~  113 (177)
T 2ful_A           50 PKIGCVL---AQCLFD------------EDIVNEIAEHNAFFTKILVT-PEYEKNFMGGIERFLGLEHKDLIPLLPKILV  113 (177)
T ss_dssp             TTHHHHH---HHHSCS------------TTHHHHTTSCHHHHHHHCCS-HHHHHHHHHHHHHHHHTTCGGGGGGHHHHHH
T ss_pred             hHHHHHH---HHHHhc------------hhHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence            5666666   777763            34667899999999999987 8999999999999995 68999999999999


Q ss_pred             HHhhccCCChHHHHHHhhcCC----CchhHHHHHHHHHHHHHHHccCCCCCCCC
Q psy3925         160 LFYKTDVISEEVILKWYKEGH----SIKGKIMFLEQMKKFVEWLQSAEEGMSSE  209 (210)
Q Consensus       160 ~LYd~DIleEe~Il~W~~~~~----~~~~~~~~~~~~~~FIeWL~eAEEEsdee  209 (210)
                      .|||.|||+||+|++||++++    +.+++++++++++|||+||++||||||+|
T Consensus       114 ~LYd~DIleEeaIl~W~~~~skk~v~~e~~~~v~~~~~pFI~WL~eAEEEseee  167 (177)
T 2ful_A          114 QLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAESDDDEE  167 (177)
T ss_dssp             HHHHTTSSCHHHHHHHHHCCCSSSSCHHHHHHHHHTTHHHHHHHHHCC------
T ss_pred             HHhccchhhhHHHHHHHhcCCcccCChHHHHHHHHHHHHHHHHHHccccccccc
Confidence            999999999999999998875    23467889999999999999999887754

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}

Probab=99.94  E-value=2.2e-27  Score=197.95  Aligned_cols=103  Identities=23%  Similarity=0.407  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHhhHHHHHHHhccCCcHhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCCCc--
Q psy3925         106 LVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYE-NMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSI--  182 (210)
Q Consensus       106 l~~~~~~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq~~c~~-~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~~~--  182 (210)
                      +|.+++.++|++|+|+|.+|++++.+.|+++|.++|.+|.. +|.+++.|++||+.|||.|||+|++|++||++++++  
T Consensus        53 lf~~~i~~~l~k~~~lL~~~~~~~~~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~LYD~DIleEEaIl~W~~~~s~~~~  132 (208)
T 2iu1_A           53 LFNEKIREQIKKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYV  132 (208)
T ss_dssp             HCSTTHHHHHHHTHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHHHHTTSSCHHHHHHHHHSCCCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccc
Confidence            34456778999999999999984379999999999999765 578999999999999999999999999999987632  


Q ss_pred             -hh-HHHHHHHHHHHHHHHccCCCCCCC
Q psy3925         183 -KG-KIMFLEQMKKFVEWLQSAEEGMSS  208 (210)
Q Consensus       183 -~~-~~~~~~~~~~FIeWL~eAEEEsde  208 (210)
                       ++ .+.++++++|||+||++||||||+
T Consensus       133 ~~e~~k~v~~~~~pFI~WL~EAEEEs~e  160 (208)
T 2iu1_A          133 SKELAKEIRVKAEPFIKWLKEAEEESSG  160 (208)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHcccccccc
Confidence             32 236799999999999999988764

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}

Probab=99.89  E-value=1.5e-22  Score=181.51  Aligned_cols=122  Identities=25%  Similarity=0.455  Sum_probs=99.6

Q ss_pred             cCCCchhHHHHHHHHHHHHHhhh--hhcc------------hhhhHHHHHHHHHhhHHHHHHHhccCCcHhHHHHHHHHH
Q psy3925          76 NGSVPPTVLQVLINIWSTVMAQV--EWNK------------KEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQ  141 (210)
Q Consensus        76 ~n~~~~~v~~al~~i~~a~m~~v--~~~~------------~~~l~~~~~~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq  141 (210)
                      .+.+++++.+++   |+++|+.+  +++.            +.++  ....++|++|+|+|.+|++++.+.|+++|+++|
T Consensus       228 ~~~~~~~fir~L---~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~--~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq  302 (364)
T 3l6a_A          228 KLHVDKGFVNIL---MTSFLQYISSEVNPPSDETDSSSAPSKEQL--EQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQ  302 (364)
T ss_dssp             HHHTCHHHHHHH---HHHHHHHHHHHHC----------CCCHHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHH---HHHHHHHHHHhcccccccccccccccHHHH--HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            356788888899   99999988  3442            2333  233468999999999999983356999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHccC
Q psy3925         142 EFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHS-IKGKIMFLEQMKKFVEWLQSA  202 (210)
Q Consensus       142 ~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~~-~~~~~~~~~~~~~FIeWL~eA  202 (210)
                      .+|++.....+.++.|++.|||.|||+||+|++||+++++ ..|+.+++++++|||+||+||
T Consensus       303 ~~~~~~~~~~~~l~~il~~LYd~DileEe~il~W~~~~~~~~~~k~~~~~~~~~Fi~WL~eA  364 (364)
T 3l6a_A          303 VHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETA  364 (364)
T ss_dssp             HHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCCCSSTTHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhccccHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhcC
Confidence            9998754334678999999999999999999999998653 357889999999999999987

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14

Probab=99.74  E-value=3.8e-18  Score=151.28  Aligned_cols=126  Identities=15%  Similarity=0.230  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHHHhhHHHhcCCCchhHHHHHHHHHHHHHhhh-hhcchhhhHHHHHHHHHhhHHHH
Q psy3925          43 MFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQV-EWNKKEELVAEQALKHLKQFTPL  121 (210)
Q Consensus        43 ~~ee~~~~~l~~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~al~~i~~a~m~~v-~~~~~~~l~~~~~~~~l~~~~~l  121 (210)
                      ++.+++.+.   ++... +.++++..+++..-+++.+.++|++++   |+++|+++ .|++.  +  ....++|++|+|+
T Consensus       210 ev~~~L~~~---l~~~~-~~~~i~~~i~~~~~~~~~~~~~~~~~l---~~a~~~~~~~~~~~--~--~~~~~~l~~~~pl  278 (339)
T 1ug3_A          210 ELNRQLEKL---LKEGS-SNQRVFDWIEANLSEQQIVSNTLVRAL---MTAVCYSAIIFETP--L--RVDVAVLKARAKL  278 (339)
T ss_dssp             HHHHHHHHH---HHTTC-CHHHHHHHHHHHSCHHHHTCHHHHHHH---HHHHHHHTEECSSS--C--EECHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHcCC-CHHHHHHHHHhcCChhhCChHHHHHHH---HHHHHHHHHhcCCc--h--HHHHHHHHHHHHH
Confidence            344444444   44444 568999999999999999999999999   99999984 56432  2  1234689999999


Q ss_pred             HHHhccCCcHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCC
Q psy3925         122 FGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGH  180 (210)
Q Consensus       122 l~~~~~~~~~~Q~~lL~alq~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~  180 (210)
                      |.+|+++ .+.|+++|+++|.+|+++..+.+.|..+++.|||.|||+||+|++||++..
T Consensus       279 l~~~~~~-~~~ql~~L~alQ~~~~~~~~~~~~l~~~~~~LYd~dVi~Eeail~W~~~~d  336 (339)
T 1ug3_A          279 LQKYLCD-EQKELQALYALQALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSWESSKD  336 (339)
T ss_dssp             HHHHCCS-HHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHTC---
T ss_pred             HHHHcCC-cHHHHHHHHHHHHHHHhccChHHHHHHHHHHHhCcchhhHHHHHHHHhcCC
Confidence            9999988 899999999999999998777899999999999999999999999998743

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*

Probab=96.65  E-value=0.031  Score=54.27  Aligned_cols=142  Identities=15%  Similarity=0.219  Sum_probs=98.0

Q ss_pred             HhHHHHH-HHHHHHHhhHHHHH-------------------------------HHHHHHHHHHHHHhcCChhHHHHHHHH
Q psy3925          22 SLKNFEQ-VFIKLMRRYKYLEK-------------------------------MFDEEMKKVLVFIKGFNETERIKLARM   69 (210)
Q Consensus        22 ~i~~~~~-v~~kl~rr~~~l~k-------------------------------~~ee~~~~~l~~l~~~~~~~~~~llEl   69 (210)
                      .=+.|++ +|.|++|. .|.+|                               +.-+.-.++++++++.. +.+..+..+
T Consensus       425 p~r~Fik~ll~k~~RL-Sy~~rIk~~lP~~~~~llp~~p~p~f~y~~e~~~~~p~~~~a~~l~~~ir~k~-~~eei~~~l  502 (771)
T 1h2v_C          425 PKPKFVREVLEKCMRL-SYHQRILDIVPPTFSALCPSNPTCIYKYGDESSNSLPGHSVALCLAVAFKSKA-TNDEIFSIL  502 (771)
T ss_dssp             HHHHHHHHHHHHHHHT-SCHHHHHTTSCGGGGGGSCCCCCCCCTTSTTSCTTSTTHHHHHHHHHHHHTTC-CHHHHHHHG
T ss_pred             cHHHHHHHHHHHHHhh-hhHHHHHHhCcHHHHhhCCCCCCCCceeCCccccCCcchHHHHHHHHHHHccC-CHHHHHHHH
Confidence            4477888 89999986 55566                               33444688889998866 566666677


Q ss_pred             hhHHHhcCCCc--------hhHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHHhhHHHHHHHhccCCcHhHHHHHHHHH
Q psy3925          70 TALWITNGSVP--------PTVLQVLINIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQ  141 (210)
Q Consensus        70 ~~Lrms~n~~~--------~~v~~al~~i~~a~m~~v~~~~~~~l~~~~~~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq  141 (210)
                      +++--+.....        .-.+..+   +++++..+   ++.  +. -+...|++|+++|+.++.+ ...|..+|.++-
T Consensus       503 ~~i~~~~~~~~~~~~~~~~~~~i~v~---~q~ll~~G---skS--~S-H~~~~lery~~~lk~l~~~-~~~q~~il~~v~  572 (771)
T 1h2v_C          503 KDVPNPNQDDDDDEGFSFNPLKIEVF---VQTLLHLA---AKS--FS-HSFSALAKFHEVFKTLAES-DEGKLHVLRVMF  572 (771)
T ss_dssp             GGCC-------------CCHHHHHHH---HHHHHHHS---TTC--HH-HHHHHHHHTHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred             HhchhcccccccccccccchHHHHHH---HHHHHHhc---cch--HH-HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence            76432211111        0222333   55555432   221  23 2445899999999999997 889999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhc
Q psy3925         142 EFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKE  178 (210)
Q Consensus       142 ~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~  178 (210)
                      .+...+|..   ...++..|-..+||+-.+|..|-=.
T Consensus       573 ~~W~~~~q~---~~ividkll~~~iv~p~~Vv~w~f~  606 (771)
T 1h2v_C          573 EVWRNHPQM---IAVLVDKMIRTQIVDCAAVANWIFS  606 (771)
T ss_dssp             HHHTTCHHH---HHHHHHHHHHTTSSCHHHHHHHHTS
T ss_pred             HHHhcCCce---EehHHHHHHhcCCCCHHHHHHHHcC
Confidence            999888864   4677888889999999999999843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d1paqa_	161	a.118.1.14 (A:) Translation initiation factor eIF-	3e-23
d1ug3a2	127	a.118.1.14 (A:1438-1564) Eukaryotic initiation fac	7e-14

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.2 bits (221), Expect = 3e-23
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 82  TVLQVLINIWSTVMAQVEWNKKEELVA--EQALKHLKQFTPLFGAFTDTAPRAELALMLK 139
           T  +V I   + ++ +V      + +   +  +K   Q+  LF           + LM  
Sbjct: 37  TYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLFKRQAFD-EEEYIDLMNI 95

Query: 140 VQEFCY--ENMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKFVE 197
           + E            +    ++  Y  D+I E+VI KW+    +        +   K+VE
Sbjct: 96  IMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKWVE 155

Query: 198 WLQSAE 203
           WLQ+A+
Sbjct: 156 WLQNAD 161

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (155), Expect = 7e-14
 Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 1/82 (1%)

Query: 94  VMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRV 153
           + A        E      +  LK    L   +     + EL  +  +Q           +
Sbjct: 47  MTAVCYSAIIFETPLRVDVAVLKARAKLLQKYLCD-EQKELQALYALQALVVTLEQPPNL 105

Query: 154 FQKIILLFYKTDVISEEVILKW 175
            +      Y  DV+ E+    W
Sbjct: 106 LRMFFDALYDEDVVKEDAFYSW 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1paqa_	161	Translation initiation factor eIF-2b epsilon {Bake	100.0
d1ug3a2	127	Eukaryotic initiation factor eIF4G {Human (Homo sa	99.74
d1h2vc3	310	CBP80, 80KDa nuclear cap-binding protein {Human (H	96.17

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-36  Score=242.06  Aligned_cols=156  Identities=19%  Similarity=0.225  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhHHHhcCCCchhHHHHHHHHHHHHHhhhhhc-chhhh-HHHHHHHHHhh
Q psy3925          40 LEKMFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVEWN-KKEEL-VAEQALKHLKQ  117 (210)
Q Consensus        40 l~k~~ee~~~~~l~~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~al~~i~~a~m~~v~~~-~~~~l-~~~~~~~~l~~  117 (210)
                      |++++.+++.+.+   +... ..|++++|+||||||+|+++++|++++   |.|+|+++.+. ..+.+ ..+++.+.|++
T Consensus         2 F~~Ev~~sl~r~~---ee~~-~~dn~iLElnslr~a~N~~~~dv~~av---~~All~~i~~~~~~~~~~~~~~~~~~l~k   74 (161)
T d1paqa_           2 FEKEGIATVERAM---ENNH-DLDTALLELNTLRMSMNVTYHEVRIAT---ITALLRRVYHFIATQTLGPKDAVVKVFNQ   74 (161)
T ss_dssp             HHHHHHHHHHHHH---HTTC-CHHHHHHHHHHHHHHTTCCHHHHHHHH---HHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH---HcCC-ChhHHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence            6788888887776   3333 569999999999999999999999999   99999988422 22222 44678899999


Q ss_pred             HHHHHHHhccCCcHhHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHhhccCCChHHHHHHhhcCCCchhHHHHHHHHHHH
Q psy3925         118 FTPLFGAFTDTAPRAELALMLKVQEFCYE--NMNLMRVFQKIILLFYKTDVISEEVILKWYKEGHSIKGKIMFLEQMKKF  195 (210)
Q Consensus       118 ~~~ll~~~~~~~~~~Q~~lL~alq~~c~~--~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~~~~~~~~~~~~~~~~~F  195 (210)
                      |+|+|.+|+++ ..+|+++|.++|.+|+.  +|.+++.|+.|++.|||.|||+||+|++||+++++++++.+++++++||
T Consensus        75 ~~~ll~~~~~~-~~~q~~~L~~lq~~c~~~~~~~~~~~~~~il~~lY~~dii~Ed~i~~W~~~~~~~~~~~~~~~~~~~f  153 (161)
T d1paqa_          75 WGLLFKRQAFD-EEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKW  153 (161)
T ss_dssp             HGGGGGGTCCS-HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHcCC-cHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHhhchhcHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence            99999999998 89999999999999986  4788899999999999999999999999999988777889999999999


Q ss_pred             HHHHccCC
Q psy3925         196 VEWLQSAE  203 (210)
Q Consensus       196 IeWL~eAE  203 (210)
                      |+||++||
T Consensus       154 v~WL~~ae  161 (161)
T d1paqa_         154 VEWLQNAD  161 (161)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHhCC
Confidence            99999997

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.2e-18  Score=131.41  Aligned_cols=121  Identities=16%  Similarity=0.218  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHHHhhHHHhcCCCchhHHHHHHHHHHHHHhhhhh-cchhhhHHHHHHHHHhhHHHH
Q psy3925          43 MFDEEMKKVLVFIKGFNETERIKLARMTALWITNGSVPPTVLQVLINIWSTVMAQVEW-NKKEELVAEQALKHLKQFTPL  121 (210)
Q Consensus        43 ~~ee~~~~~l~~l~~~~~~~~~~llEl~~Lrms~n~~~~~v~~al~~i~~a~m~~v~~-~~~~~l~~~~~~~~l~~~~~l  121 (210)
                      ++.+++.+.+   +... ..+.....+++.+-+.+.+.+.+.+++   +.+++..+.+ ++...    ...+++++|+|+
T Consensus         6 ~l~~~L~~~l---~e~~-~~~~i~~wIk~~~~~~~~~~~~~i~aL---~~~v~~~~~~~~~~~~----~~~~~l~k~~~l   74 (127)
T d1ug3a2           6 ELNRQLEKLL---KEGS-SNQRVFDWIEANLSEQQIVSNTLVRAL---MTAVCYSAIIFETPLR----VDVAVLKARAKL   74 (127)
T ss_dssp             HHHHHHHHHH---HTTC-CHHHHHHHHHHHSCHHHHTCHHHHHHH---HHHHHHHTEECSSSCE----ECHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HcCC-CHHHHHHHHHHhcccccCCChHHHHHH---HHHHHHHHHHccCcHH----HHHHHHHHHHHH
Confidence            3455555554   4433 558888889998888888999999999   8888876532 22112    224579999999


Q ss_pred             HHHhccCCcHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHH
Q psy3925         122 FGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKW  175 (210)
Q Consensus       122 l~~~~~~~~~~Q~~lL~alq~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W  175 (210)
                      |.+|+++ .+.|+++|+++|.+|++++.+.+.|+.|++.|||.|||+||+|++|
T Consensus        75 l~~~~~~-~~~ql~~L~~lQ~~~~~~~~~~~~~~~i~~~LYd~dvi~Ee~i~~W  127 (127)
T d1ug3a2          75 LQKYLCD-EQKELQALYALQALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSW  127 (127)
T ss_dssp             HHHHCCS-HHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHHhCC-cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhccccccHHhhccC
Confidence            9999998 8899999999999999977777889999999999999999999999

>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: CBP80, 80KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.021  Score=47.68  Aligned_cols=64  Identities=11%  Similarity=0.314  Sum_probs=55.8

Q ss_pred             HHHHHhhHHHHHHHhccCCcHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhccCCChHHHHHHhhc
Q psy3925         111 ALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKTDVISEEVILKWYKE  178 (210)
Q Consensus       111 ~~~~l~~~~~ll~~~~~~~~~~Q~~lL~alq~~c~~~~~~~~~f~~Il~~LYd~DIleEe~Il~W~~~  178 (210)
                      +...|++|++.|+.++.+ ...|..+|.++-.|...+|..   ...++..|-...||+-.+|..|-=+
T Consensus        82 ~~~~lery~~~lk~l~~~-~~~q~~il~~v~~~W~~~~q~---~~v~~dkll~~~ii~~~aVv~W~fs  145 (310)
T d1h2vc3          82 SFSALAKFHEVFKTLAES-DEGKLHVLRVMFEVWRNHPQM---IAVLVDKMIRTQIVDCAAVANWIFS  145 (310)
T ss_dssp             HHHHHHHTHHHHHHHTSS-HHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHTTSSCHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcCCcc---hHHHHHHHHHcCCcChHHHHHHhcC
Confidence            345789999999999988 889999999999999888864   4678888999999999999999843