Psyllid ID: psy3963

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MLSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFKIGTKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQESWLSSDKCRVENQVEFRIPR
Secondary Structure (PSIPRED)
cHHHHHHHccccccccccccccccccccHHHHHHHHHHcccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccccEEEEEEcccccHEEEEEHHcccccEEEEEEEcccccccccEccHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEEcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLSRLLEQCalsfdpksshykierskesTARITIWREYGVVRSYTMestycgfdqgsfkigtkESMKIVRGLIEFCTRVlkktpyfycdfhghslkknIFLYgcssqeswlssdkcrvenqvefripr
Flexible Loop (DISEMBL)
mlsrlleqcalsfdpksshykierskestaritiWREYGVVRSYTMESTYcgfdqgsfkigtKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQeswlssdkcrvenqvefripr
Low Complexity Region (SEG)
MLSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFKIGTKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQESWLSSDKCRVENQVEFRIPR
Disordered region (IsUnstruct)
****************************TARITIWREYGVVRSYTMESTYCGFDQGSFKIGTKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQESWLSS**C************
Disordered Region (DISOPRED)
MLSRLL*QCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFKIGTKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGC*****************VEFRIP*
Disordered Region (DISEMBL)
MLSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFKIGTKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQESWLSSDKCRVENQVEFRIPR
Disordered Region (DISPRO)
MLSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFKIGTKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQESWLSSDKCRVENQVEF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFKIGTKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQESWLSSDKCRVENQVEFRIPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q4U2V3	1153	Cytosolic carboxypeptidas	yes	N/A	0.601	0.066	0.493	1e-14
A9JRL3	1226	Cytosolic carboxypeptidas	no	N/A	0.492	0.051	0.575	4e-14
E1C3P4	1224	Cytosolic carboxypeptidas	yes	N/A	0.5	0.052	0.567	1e-13
Q6DD21	1225	Cytosolic carboxypeptidas	N/A	N/A	0.492	0.051	0.560	1e-13
Q9UPW5	1226	Cytosolic carboxypeptidas	yes	N/A	0.492	0.051	0.545	1e-12
Q641K1	1218	Cytosolic carboxypeptidas	yes	N/A	0.492	0.051	0.545	2e-12
Q96MI9	1066	Cytosolic carboxypeptidas	no	N/A	0.679	0.081	0.385	2e-12
Q09M05	972	Cytosolic carboxypeptidas	no	N/A	0.453	0.059	0.474	8e-12
O76373	1015	Cytosolic carboxypeptidas	yes	N/A	0.562	0.070	0.394	9e-10
E1B9D8	1003	Cytosolic carboxypeptidas	no	N/A	0.742	0.094	0.320	3e-05

>sp|Q4U2V3|CBPC1_DANRE Cytosolic carboxypeptidase 1 OS=Danio rerio GN=agtpbp1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 6/83 (7%)

Query: 2    LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
            L +LL Q A +F   S  + +ERSKE+TAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct: 982  LPKLLSQMAPAFSLSSCSFVVERSKEATARVVVWREIGVQRSYTMESTLCGCDQGKYKGL 1041

Query: 60   -IGTKESMKIVRGLIEFCTRVLK 81
             IGT E  ++     +FC  +L+
Sbjct: 1042 QIGTSELEEMGS---QFCLALLR 1061

Metallocarboxypeptidase that mediates deglutamylation of target proteins. Catalyzes the deglutamylation of polyglutamate side chains generated by post-translational polyglutamylation in proteins such as tubulins. Also removes gene-encoded polyglutamates from the carboxy-terminus of target proteins. Acts as a long-chain deglutamylase and specifically shortens long polyglutamate chains, while it is not able to remove the branching point glutamate.
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 4EC: .EC: 1EC: 7EC: .EC: -

>sp|A9JRL3|CBPC1_XENTR Cytosolic carboxypeptidase 1 OS=Xenopus tropicalis GN=agtpbp1 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 2    LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
            L ++L Q A +F   S  + +E+SKESTAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct: 1052 LPKVLNQLAPAFSMSSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGKYKDL 1111

Query: 60   -IGTKE 64
             IGTKE
Sbjct: 1112 QIGTKE 1117

Metallocarboxypeptidase that mediates deglutamylation of target proteins. Catalyzes the deglutamylation of polyglutamate side chains generated by post-translational polyglutamylation in proteins such as tubulins. Also removes gene-encoded polyglutamates from the carboxy-terminus of target proteins. Acts as a long-chain deglutamylase and specifically shortens long polyglutamate chains, while it is not able to remove the branching point glutamate.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|E1C3P4|CBPC1_CHICK Cytosolic carboxypeptidase 1 OS=Gallus gallus GN=AGTPBP1 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 1    MLSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK- 59
            +L ++L Q A +F   S  + +E+SKESTAR+ +WRE GV RSYTMEST CG DQG +K 
Sbjct: 1054 VLPKILSQTAPAFCMGSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGKYKG 1113

Query: 60   --IGTKE 64
              IGTKE
Sbjct: 1114 LQIGTKE 1120

Metallocarboxypeptidase that mediates deglutamylation of target proteins. Catalyzes the deglutamylation of polyglutamate side chains generated by post-translational polyglutamylation in proteins such as tubulins. Also removes gene-encoded polyglutamates from the carboxy-terminus of target proteins. Acts as a long-chain deglutamylase and specifically shortens long polyglutamate chains, while it is not able to remove the branching point glutamate.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|Q6DD21|CBPC1_XENLA Cytosolic carboxypeptidase 1 OS=Xenopus laevis GN=agtpbp1 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 2    LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
            L ++L Q A +F   S  + +E+SKESTAR+ +W+E GV RSYTMEST CG DQG +K  
Sbjct: 1051 LPKVLNQIAPAFSMSSCSFVVEKSKESTARVVVWKEIGVQRSYTMESTLCGCDQGKYKDL 1110

Query: 60   -IGTKE 64
             IGTKE
Sbjct: 1111 QIGTKE 1116

Metallocarboxypeptidase that mediates deglutamylation of target proteins. Catalyzes the deglutamylation of polyglutamate side chains generated by post-translational polyglutamylation in proteins such as tubulins. Also removes gene-encoded polyglutamates from the carboxy-terminus of target proteins. Acts as a long-chain deglutamylase and specifically shortens long polyglutamate chains, while it is not able to remove the branching point glutamate.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|Q9UPW5|CBPC1_HUMAN Cytosolic carboxypeptidase 1 OS=Homo sapiens GN=AGTPBP1 PE=1 SV=3

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 2    LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
            L ++L   A +F   S  + +E+SKESTAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct: 1057 LPKILSHIAPAFCMSSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGKYKGL 1116

Query: 60   -IGTKE 64
             IGT+E
Sbjct: 1117 QIGTRE 1122

Metallocarboxypeptidase that mediates deglutamylation of target proteins. Catalyzes the deglutamylation of polyglutamate side chains generated by post-translational polyglutamylation in proteins such as tubulins. Also removes gene-encoded polyglutamates from the carboxy-terminus of target proteins such as MYLK. Acts as a long-chain deglutamylase and specifically shortens long polyglutamate chains, while it is not able to remove the branching point glutamate, a process catalyzed by AGBL5/CCP5.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|Q641K1|CBPC1_MOUSE Cytosolic carboxypeptidase 1 OS=Mus musculus GN=Agtpbp1 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 2    LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
            L ++L   A +F   S  + +E+SKESTAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct: 1049 LPKILSHIAPAFCMSSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGRYKGL 1108

Query: 60   -IGTKE 64
             IGT+E
Sbjct: 1109 QIGTRE 1114

Metallocarboxypeptidase that mediates deglutamylation of target proteins. Catalyzes the deglutamylation of polyglutamate side chains generated by post-translational polyglutamylation in proteins such as tubulins. Also removes gene-encoded polyglutamates from the carboxy-terminus of target proteins such as MYLK. Acts as a long-chain deglutamylase and specifically shortens long polyglutamate chains, while it is not able to remove the branching point glutamate, a process catalyzed by AGBL5/CCP5. Deglutamylation plays a key role in cerebellar Purkinje cell differentiation, accumulation of tubulin polyglutamylation causing neurodegeneration.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|Q96MI9|CBPC4_HUMAN Cytosolic carboxypeptidase 4 OS=Homo sapiens GN=AGBL1 PE=2 SV=2

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 9/96 (9%)

Query: 2   LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFKIG 61
           L ++L++ A +F   S  + +E+S+ STAR+ +WRE GV RSYTMES+YCG +QG ++  
Sbjct: 895 LPKILDKLAPAFTMSSCSFLVEKSRASTARVVVWREMGVSRSYTMESSYCGCNQGPYQCT 954

Query: 62  TK-------ESMKIVRGL--IEFCTRVLKKTPYFYC 88
            +       E    V GL  ++F TR L++    +C
Sbjct: 955 QRLLERTKNERAHPVDGLQGLQFGTRELEEMGAMFC 990

Metallocarboxypeptidase that mediates deglutamylation of target proteins. Catalyzes the deglutamylation of polyglutamate side chains generated by post-translational polyglutamylation in proteins such as tubulins. Also removes gene-encoded polyglutamates from the carboxy-terminus of target proteins such as MYLK. Acts as a long-chain deglutamylase and specifically shortens long polyglutamate chains, while it is not able to remove the branching point glutamate, a process catalyzed by AGBL5/CCP5.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|Q09M05|CBPC4_MOUSE Cytosolic carboxypeptidase 4 OS=Mus musculus GN=Agbl1 PE=1 SV=2

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 44/59 (74%)

Query: 2   LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFKI 60
           L ++L++ A +F   S  + +E+S+ STAR+ +WRE GV RSYTMES+YCG +QG +++
Sbjct: 894 LPKILDKLAPAFTMNSCSFLVEKSRASTARVVVWREMGVSRSYTMESSYCGCNQGPYQV 952

Metallocarboxypeptidase that mediates deglutamylation of target proteins. Catalyzes the deglutamylation of polyglutamate side chains generated by post-translational polyglutamylation in proteins such as tubulins. Also removes gene-encoded polyglutamates from the carboxy-terminus of target proteins such as MYLK. Acts as a long-chain deglutamylase and specifically shortens long polyglutamate chains, while it is not able to remove the branching point glutamate, a process catalyzed by AGBL5/CCP5.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|O76373|CBPC1_CAEEL Cytosolic carboxypeptidase 1 OS=Caenorhabditis elegans GN=ccpp-1 PE=2 SV=2

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 4/76 (5%)

Query: 2    LSRLLEQ-CALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQG---S 57
            L + LE  C   F+     + I R+KES+AR+ +WR++GV  +YT+EST+CGF +G    
Sbjct: 931  LPKALEATCPSRFNASECRFNITRAKESSARVNVWRQFGVSTAYTLESTFCGFHKGQNSG 990

Query: 58   FKIGTKESMKIVRGLI 73
            ++I T +  +I R L+
Sbjct: 991  YQINTSDLKEIGRDLL 1006

Metallocarboxypeptidase.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

>sp|E1B9D8|CBPC3_BOVIN Cytosolic carboxypeptidase 3 OS=Bos taurus GN=AGBL3 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 5   LLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFKIGTKE 64
           L + C   F   S  + I++SKE T R+ +W+  G+  S+TME+T+CG   G+ K GT  
Sbjct: 493 LSKNCPDKFSFSSCKFNIQKSKEGTGRVVMWK-MGIRNSFTMEATFCGSTLGN-KRGTHF 550

Query: 65  SMKIVRGL-IEFCTRVL-----KKTPYFYCDFHGHSLKKNIFL 101
           + K +  +   FC  +L      +T Y+ C      ++K+I L
Sbjct: 551 NTKDLESMGYHFCDSLLDYCDPDRTKYYQCLKELDEMEKHINL 593

Metallocarboxypeptidase that may play a role in the processing of tubulin.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 7

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
242015814	1079	conserved hypothetical protein [Pediculu	0.429	0.050	0.581	6e-14
432873776	1227	PREDICTED: cytosolic carboxypeptidase 1-	0.75	0.078	0.442	3e-13
66773052	1153	cytosolic carboxypeptidase 1 [Danio reri	0.601	0.066	0.493	8e-13
348517278	1234	PREDICTED: cytosolic carboxypeptidase 1-	0.601	0.062	0.481	1e-12
410922808	1218	PREDICTED: cytosolic carboxypeptidase 1-	0.601	0.063	0.481	2e-12
301607534	1053	PREDICTED: cytosolic carboxypeptidase 4-	0.453	0.055	0.525	3e-12
166158244	1226	cytosolic carboxypeptidase 1 [Xenopus (S	0.492	0.051	0.575	3e-12
443695617	1273	hypothetical protein CAPTEDRAFT_228599 [	0.609	0.061	0.469	4e-12
198427078	1401	PREDICTED: similar to Cytosolic carboxyp	0.492	0.044	0.545	4e-12
328720769	1030	PREDICTED: hypothetical protein LOC10016	0.453	0.056	0.517	6e-12

>gi|242015814|ref|XP_002428542.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513176|gb|EEB15804.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 45/55 (81%)

Query: 70  RGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQESWLSSDKCRVENQVEF 124
           +GL+E+C R+LKK P+ +CDFHGHS KKN+FLYGC++ ESW  SDK ++ + VE+
Sbjct: 898 KGLLEYCCRILKKPPFVFCDFHGHSRKKNVFLYGCANNESWSESDKQQIVSPVEY 952

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432873776|ref|XP_004072384.1| PREDICTED: cytosolic carboxypeptidase 1-like [Oryzias latipes]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 8/104 (7%)

Query: 2    LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQG---SF 58
            L ++L + A +F   SS + +ERSKESTAR+ +WRE GV RSYTMEST CG DQG    F
Sbjct: 1072 LPKILSEIAPAFSMASSSFVVERSKESTARVVVWREIGVQRSYTMESTLCGCDQGKYKGF 1131

Query: 59   KIGTKESMKIVRGLIEFCTRV--LKKTPYFYCDFHGHSLKKNIF 100
            +IGT+E  ++     +FC  +  LK+   F    HG  L  ++ 
Sbjct: 1132 QIGTRELEEMG---AQFCVALLRLKRLIGFRNHQHGWDLDNDVI 1172

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|66773052|ref|NP_001019616.1| cytosolic carboxypeptidase 1 [Danio rerio] gi|82225635|sp|Q4U2V3.1|CBPC1_DANRE RecName: Full=Cytosolic carboxypeptidase 1; AltName: Full=ATP/GTP-binding protein 1 gi|65335311|gb|AAY42353.1| ATP/GTP binding protein 1 [Danio rerio]

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 6/83 (7%)

Query: 2    LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
            L +LL Q A +F   S  + +ERSKE+TAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct: 982  LPKLLSQMAPAFSLSSCSFVVERSKEATARVVVWREIGVQRSYTMESTLCGCDQGKYKGL 1041

Query: 60   -IGTKESMKIVRGLIEFCTRVLK 81
             IGT E  ++     +FC  +L+
Sbjct: 1042 QIGTSELEEMGS---QFCLALLR 1061

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348517278|ref|XP_003446161.1| PREDICTED: cytosolic carboxypeptidase 1-like [Oreochromis niloticus]

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 6/83 (7%)

Query: 2    LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
            L ++L Q A  F   S  + +ERSKE+TAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct: 1073 LPKILSQIAPVFSMASCSFVVERSKEATARVVVWREIGVQRSYTMESTLCGCDQGKYKGL 1132

Query: 60   -IGTKESMKIVRGLIEFCTRVLK 81
             IGT+E  ++     +FC  +L+
Sbjct: 1133 QIGTRELEEMG---AQFCVALLR 1152

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410922808|ref|XP_003974874.1| PREDICTED: cytosolic carboxypeptidase 1-like [Takifugu rubripes]

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 6/83 (7%)

Query: 2    LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
            L ++L Q A +F   S  + +ERSKESTAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct: 1053 LPKILSQIAPAFSMGSCSFVVERSKESTARVVVWREIGVQRSYTMESTLCGCDQGKYKGL 1112

Query: 60   -IGTKESMKIVRGLIEFCTRVLK 81
             I T+E  ++     +FC  +L+
Sbjct: 1113 HISTRELEEMG---AQFCVALLR 1132

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301607534|ref|XP_002933362.1| PREDICTED: cytosolic carboxypeptidase 4-like, partial [Xenopus (Silurana) tropicalis]

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 48/59 (81%)

Query: 2   LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFKI 60
           L ++L++ A +F   +S + +E+++ESTAR+ +W E GV+RSYTMESTYCGF+QG++KI
Sbjct: 895 LPKILDKIAPAFSMANSSFLVEKARESTARVVVWHEIGVLRSYTMESTYCGFNQGAYKI 953

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|166158244|ref|NP_001107308.1| cytosolic carboxypeptidase 1 [Xenopus (Silurana) tropicalis] gi|317374801|sp|A9JRL3.1|CBPC1_XENTR RecName: Full=Cytosolic carboxypeptidase 1; AltName: Full=ATP/GTP-binding protein 1 gi|161611926|gb|AAI55704.1| LOC100135097 protein [Xenopus (Silurana) tropicalis]

 Score = 76.6 bits (187), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 2    LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
            L ++L Q A +F   S  + +E+SKESTAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct: 1052 LPKVLNQLAPAFSMSSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGKYKDL 1111

Query: 60   -IGTKE 64
             IGTKE
Sbjct: 1112 QIGTKE 1117

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443695617|gb|ELT96483.1| hypothetical protein CAPTEDRAFT_228599 [Capitella teleta]

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 3/81 (3%)

Query: 2    LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
            L ++L+  A +F   + ++ +E+SKESTAR+ +WRE GV+RSYTMESTYCG DQG++K  
Sbjct: 1075 LPKILQTLAPAFSFSNCNFVVEKSKESTARVVVWRECGVMRSYTMESTYCGCDQGNYKGY 1134

Query: 60   -IGTKESMKIVRGLIEFCTRV 79
             I T++  ++ R   E   RV
Sbjct: 1135 HINTRQHEEMGRRFCEALARV 1155

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|198427078|ref|XP_002124627.1| PREDICTED: similar to Cytosolic carboxypeptidase 1 (ATP/GTP-binding protein 1) (Nervous system nuclear protein induced by axotomy) [Ciona intestinalis]

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 2    LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
            L +LL   A SF  K   Y +E+SK +TAR+ +W+E GV RSYTMESTYCG DQG ++  
Sbjct: 1116 LPKLLNHFAPSFSLKGCSYVVEKSKVTTARVVVWKEIGVARSYTMESTYCGCDQGRYRGL 1175

Query: 60   -IGTKE 64
             +GTKE
Sbjct: 1176 QVGTKE 1181

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328720769|ref|XP_001946321.2| PREDICTED: hypothetical protein LOC100169101 [Acyrthosiphon pisum]

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 41/58 (70%)

Query: 69  VRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQESWLSSDKCRVENQVEFRI 126
            RG++E+ T V+KK PY YCDFHGHS  KN F YGCS+++SW   D  + EN+ +F +
Sbjct: 855 ARGILEYMTHVMKKVPYVYCDFHGHSNTKNCFFYGCSAKKSWSRMDLSKYENETDFMV 912

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
ZFIN|ZDB-GENE-081104-267	1153	agtpbp1 "ATP/GTP binding prote	0.703	0.078	0.453	8.9e-14
UNIPROTKB|A9JRL3	1226	agtpbp1 "Cytosolic carboxypept	0.601	0.062	0.506	9.6e-14
UNIPROTKB|E1C3P4	1224	AGTPBP1 "Cytosolic carboxypept	0.609	0.063	0.5	2e-13
UNIPROTKB|Q6DD21	1225	agtpbp1 "Cytosolic carboxypept	0.601	0.062	0.493	2e-13
UNIPROTKB|F1PL04	1132	AGTPBP1 "Uncharacterized prote	0.601	0.068	0.481	1e-12
UNIPROTKB|F1MKS6	1222	F1MKS6 "Uncharacterized protei	0.601	0.063	0.481	1.1e-12
UNIPROTKB|Q9UPW5	1226	AGTPBP1 "Cytosolic carboxypept	0.601	0.062	0.481	1.1e-12
UNIPROTKB|J9NSE2	1226	AGTPBP1 "Uncharacterized prote	0.601	0.062	0.481	1.1e-12
UNIPROTKB|F1LR54	1175	Agtpbp1 "Protein Agtpbp1" [Rat	0.601	0.065	0.481	1.4e-12
MGI|MGI:2159437	1218	Agtpbp1 "ATP/GTP binding prote	0.601	0.063	0.481	1.4e-12

ZFIN|ZDB-GENE-081104-267 agtpbp1 "ATP/GTP binding protein 1" [Danio rerio (taxid:7955)]

 Score = 192 (72.6 bits), Expect = 8.9e-14, P = 8.9e-14
 Identities = 44/97 (45%), Positives = 60/97 (61%)

Query:     2 LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
             L +LL Q A +F   S  + +ERSKE+TAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct:   982 LPKLLSQMAPAFSLSSCSFVVERSKEATARVVVWREIGVQRSYTMESTLCGCDQGKYKGL 1041

Query:    60 -IGTKESMKIVRGLIEFCTRVLKKTPYFY-CDFHGHS 94
              IGT E  ++  G  +FC  +L+   +    + H H+
Sbjct:  1042 QIGTSELEEM--GS-QFCLALLRLRRFTSPLELHNHN 1075

GO:0004181 "metallocarboxypeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS

GO:0007005 "mitochondrion organization" evidence=ISS

GO:0015631 "tubulin binding" evidence=ISS

GO:0035609 "C-terminal protein deglutamylation" evidence=ISS

GO:0021702 "cerebellar Purkinje cell differentiation" evidence=ISS

GO:0021772 "olfactory bulb development" evidence=ISS

GO:0050905 "neuromuscular process" evidence=ISS

GO:0001754 "eye photoreceptor cell differentiation" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0035610 "protein side chain deglutamylation" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004180 "carboxypeptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|A9JRL3 agtpbp1 "Cytosolic carboxypeptidase 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 192 (72.6 bits), Expect = 9.6e-14, P = 9.6e-14
 Identities = 42/83 (50%), Positives = 56/83 (67%)

Query:     2 LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
             L ++L Q A +F   S  + +E+SKESTAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct:  1052 LPKVLNQLAPAFSMSSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGKYKDL 1111

Query:    60 -IGTKESMKIVRGLIEFCTRVLK 81
              IGTKE  ++  G  +FC  +L+
Sbjct:  1112 QIGTKELEEM--GA-KFCVGLLR 1131

GO:0001754 "eye photoreceptor cell differentiation" evidence=ISS

GO:0004181 "metallocarboxypeptidase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0007005 "mitochondrion organization" evidence=ISS

GO:0015631 "tubulin binding" evidence=ISS

GO:0021702 "cerebellar Purkinje cell differentiation" evidence=ISS

GO:0021772 "olfactory bulb development" evidence=ISS

GO:0035609 "C-terminal protein deglutamylation" evidence=ISS

GO:0035610 "protein side chain deglutamylation" evidence=ISS

GO:0050905 "neuromuscular process" evidence=ISS

UNIPROTKB|E1C3P4 AGTPBP1 "Cytosolic carboxypeptidase 1" [Gallus gallus (taxid:9031)]

 Score = 189 (71.6 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 42/84 (50%), Positives = 57/84 (67%)

Query:     1 MLSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK- 59
             +L ++L Q A +F   S  + +E+SKESTAR+ +WRE GV RSYTMEST CG DQG +K 
Sbjct:  1054 VLPKILSQTAPAFCMGSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGKYKG 1113

Query:    60 --IGTKESMKIVRGLIEFCTRVLK 81
               IGTKE  ++  G  +FC  +L+
Sbjct:  1114 LQIGTKELEEM--GA-KFCVGLLR 1134

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0042133 "neurotransmitter metabolic process" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0015631 "tubulin binding" evidence=ISS

GO:0004181 "metallocarboxypeptidase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0050905 "neuromuscular process" evidence=ISS

GO:0021772 "olfactory bulb development" evidence=ISS

GO:0021702 "cerebellar Purkinje cell differentiation" evidence=ISS

GO:0007005 "mitochondrion organization" evidence=ISS

GO:0001754 "eye photoreceptor cell differentiation" evidence=ISS

GO:0035610 "protein side chain deglutamylation" evidence=ISS

GO:0035609 "C-terminal protein deglutamylation" evidence=ISS

UNIPROTKB|Q6DD21 agtpbp1 "Cytosolic carboxypeptidase 1" [Xenopus laevis (taxid:8355)]

 Score = 189 (71.6 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 41/83 (49%), Positives = 56/83 (67%)

Query:     2 LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
             L ++L Q A +F   S  + +E+SKESTAR+ +W+E GV RSYTMEST CG DQG +K  
Sbjct:  1051 LPKVLNQIAPAFSMSSCSFVVEKSKESTARVVVWKEIGVQRSYTMESTLCGCDQGKYKDL 1110

Query:    60 -IGTKESMKIVRGLIEFCTRVLK 81
              IGTKE  ++  G  +FC  +L+
Sbjct:  1111 QIGTKELEEM--GA-KFCVGLLR 1130

GO:0001754 "eye photoreceptor cell differentiation" evidence=ISS

GO:0004181 "metallocarboxypeptidase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0007005 "mitochondrion organization" evidence=ISS

GO:0015631 "tubulin binding" evidence=ISS

GO:0021702 "cerebellar Purkinje cell differentiation" evidence=ISS

GO:0021772 "olfactory bulb development" evidence=ISS

GO:0035609 "C-terminal protein deglutamylation" evidence=ISS

GO:0035610 "protein side chain deglutamylation" evidence=ISS

GO:0050905 "neuromuscular process" evidence=ISS

UNIPROTKB|F1PL04 AGTPBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 40/83 (48%), Positives = 55/83 (66%)

Query:     2 LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
             L ++L   A +F   S  + +E+SKESTAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct:   968 LPKILSHIAPAFCMSSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGKYKGL 1027

Query:    60 -IGTKESMKIVRGLIEFCTRVLK 81
              IGT+E  ++  G  +FC  +L+
Sbjct:  1028 QIGTRELEEM--GA-KFCVGLLR 1047

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004181 "metallocarboxypeptidase activity" evidence=IEA

UNIPROTKB|F1MKS6 F1MKS6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 182 (69.1 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 40/83 (48%), Positives = 55/83 (66%)

Query:     2 LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
             L ++L   A +F   S  + +E+SKESTAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct:  1054 LPKILSHIAPAFCMSSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGKYKGL 1113

Query:    60 -IGTKESMKIVRGLIEFCTRVLK 81
              IGT+E  ++  G  +FC  +L+
Sbjct:  1114 QIGTRELEEM--GA-KFCVGLLR 1133

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0050905 "neuromuscular process" evidence=IEA

GO:0042133 "neurotransmitter metabolic process" evidence=IEA

GO:0035610 "protein side chain deglutamylation" evidence=IEA

GO:0035609 "C-terminal protein deglutamylation" evidence=IEA

GO:0021772 "olfactory bulb development" evidence=IEA

GO:0021702 "cerebellar Purkinje cell differentiation" evidence=IEA

GO:0015631 "tubulin binding" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004181 "metallocarboxypeptidase activity" evidence=IEA

GO:0001754 "eye photoreceptor cell differentiation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q9UPW5 AGTPBP1 "Cytosolic carboxypeptidase 1" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 40/83 (48%), Positives = 55/83 (66%)

Query:     2 LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
             L ++L   A +F   S  + +E+SKESTAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct:  1057 LPKILSHIAPAFCMSSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGKYKGL 1116

Query:    60 -IGTKESMKIVRGLIEFCTRVLK 81
              IGT+E  ++  G  +FC  +L+
Sbjct:  1117 QIGTRELEEM--GA-KFCVGLLR 1136

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0042133 "neurotransmitter metabolic process" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0050905 "neuromuscular process" evidence=ISS

GO:0021772 "olfactory bulb development" evidence=ISS

GO:0021702 "cerebellar Purkinje cell differentiation" evidence=ISS

GO:0007005 "mitochondrion organization" evidence=ISS

GO:0001754 "eye photoreceptor cell differentiation" evidence=ISS

GO:0015631 "tubulin binding" evidence=ISS

GO:0004181 "metallocarboxypeptidase activity" evidence=ISS

GO:0035610 "protein side chain deglutamylation" evidence=ISS

GO:0035609 "C-terminal protein deglutamylation" evidence=ISS

UNIPROTKB|J9NSE2 AGTPBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 40/83 (48%), Positives = 55/83 (66%)

Query:     2 LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
             L ++L   A +F   S  + +E+SKESTAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct:  1057 LPKILSHIAPAFCMSSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGKYKGL 1116

Query:    60 -IGTKESMKIVRGLIEFCTRVLK 81
              IGT+E  ++  G  +FC  +L+
Sbjct:  1117 QIGTRELEEM--GA-KFCVGLLR 1136

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004181 "metallocarboxypeptidase activity" evidence=IEA

UNIPROTKB|F1LR54 Agtpbp1 "Protein Agtpbp1" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 40/83 (48%), Positives = 55/83 (66%)

Query:     2 LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
             L ++L   A +F   S  + +E+SKESTAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct:  1050 LPKILSHIAPAFCMSSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGRYKGL 1109

Query:    60 -IGTKESMKIVRGLIEFCTRVLK 81
              IGT+E  ++  G  +FC  +L+
Sbjct:  1110 QIGTRELEEM--GA-KFCVGLLR 1129

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0004181 "metallocarboxypeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

MGI|MGI:2159437 Agtpbp1 "ATP/GTP binding protein 1" [Mus musculus (taxid:10090)]

 Score = 181 (68.8 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 40/83 (48%), Positives = 55/83 (66%)

Query:     2 LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
             L ++L   A +F   S  + +E+SKESTAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct:  1049 LPKILSHIAPAFCMSSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGRYKGL 1108

Query:    60 -IGTKESMKIVRGLIEFCTRVLK 81
              IGT+E  ++  G  +FC  +L+
Sbjct:  1109 QIGTRELEEM--GA-KFCVGLLR 1128

GO:0001754 "eye photoreceptor cell differentiation" evidence=IMP

GO:0004180 "carboxypeptidase activity" evidence=IEA

GO:0004181 "metallocarboxypeptidase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0007628 "adult walking behavior" evidence=IMP

GO:0008152 "metabolic process" evidence=TAS

GO:0008219 "cell death" evidence=IEA

GO:0008233 "peptidase activity" evidence=TAS

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015631 "tubulin binding" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0021549 "cerebellum development" evidence=IMP

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IMP

GO:0021702 "cerebellar Purkinje cell differentiation" evidence=IMP

GO:0021772 "olfactory bulb development" evidence=IMP

GO:0035609 "C-terminal protein deglutamylation" evidence=IDA

GO:0035610 "protein side chain deglutamylation" evidence=IDA

GO:0042133 "neurotransmitter metabolic process" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0050905 "neuromuscular process" evidence=IGI;IMP

GO:0060041 "retina development in camera-type eye" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q641K1	CBPC1_MOUSE	3, ., 4, ., 1, 7, ., -	0.5454	0.4921	0.0517	yes	N/A
E1C3P4	CBPC1_CHICK	3, ., 4, ., 1, 7, ., -	0.5671	0.5	0.0522	yes	N/A
Q9UPW5	CBPC1_HUMAN	3, ., 4, ., 1, 7, ., -	0.5454	0.4921	0.0513	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	128
cd06906	278	cd06906, M14_Nna1, Peptidase M14-like domain of AT	8e-23
cd06235	258	cd06235, M14_Nna1_like_2, Peptidase M14-like domai	7e-13
cd06235	258	cd06235, M14_Nna1_like_2, Peptidase M14-like domai	2e-11
cd06907	261	cd06907, M14_AGBL2-3_like, Peptidase M14-like doma	2e-11
cd06906	278	cd06906, M14_Nna1, Peptidase M14-like domain of AT	8e-11
cd06907	261	cd06907, M14_AGBL2-3_like, Peptidase M14-like doma	2e-07
cd03856	258	cd03856, M14_Nna1_like, Peptidase M14-like domain	3e-06
cd03856	258	cd03856, M14_Nna1_like, Peptidase M14-like domain	6e-06
cd06236	308	cd06236, M14_AGBL5_like, Peptidase M14-like domain	0.001

>gnl|CDD|133116 cd06906, M14_Nna1, Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases

 Score = 89.5 bits (222), Expect = 8e-23
 Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 2   LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFK-- 59
           L ++L   A +F   S  + +E+SKESTAR+ +WRE GV RSYTMEST CG DQG +K  
Sbjct: 199 LPKILSHIAPAFSMSSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGKYKGL 258

Query: 60  -IGTKE 64
            IGTKE
Sbjct: 259 QIGTKE 264

Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna1 cause Purkinje cell degeneration (pcd). The Nna1 CP domain is required to prevent the retinal photoreceptor loss and cerebellar ataxia phenotypes of pcd mice, and a functional zinc-binding domain is needed for Nna-1 to support neuron survival in these mice. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain. Length = 278

>gnl|CDD|199859 cd06235, M14_Nna1_like_2, Peptidase M14-like domain of human Nna1/AGTPBP-1, AGBL2 -5, and related proteins

 Score = 62.6 bits (153), Expect = 7e-13
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 2   LSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFKI 60
             +LL +    F   S  +K+++ KE TAR+ +W+E  +  SYT+E+++ G+ +G+   
Sbjct: 179 FPKLLSKLCPYFSFSSCSFKVQKDKEGTARVALWKELKIPNSYTLETSFGGYQKGNRAG 237

Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna1 cause Purkinje cell degeneration (pcd). The Nna1 CP domain is required to prevent the retinal photoreceptor loss and cerebellar ataxia phenotypes of pcd mice, and a functional zinc-binding domain is needed for Nna-1 to support neuron survival in these mice. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain. Length = 258

>gnl|CDD|199859 cd06235, M14_Nna1_like_2, Peptidase M14-like domain of human Nna1/AGTPBP-1, AGBL2 -5, and related proteins

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 81  KKTPYFYCDFHGHSLKKNIFLYGCSSQESWLSSDKCRV 118
           ++    + D HGHS KKN F+YGC + +  L+  K R+
Sbjct: 141 ERNIILFIDLHGHSRKKNSFMYGCENSDDPLNYYKERL 178

Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna1 cause Purkinje cell degeneration (pcd). The Nna1 CP domain is required to prevent the retinal photoreceptor loss and cerebellar ataxia phenotypes of pcd mice, and a functional zinc-binding domain is needed for Nna-1 to support neuron survival in these mice. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain. Length = 258

>gnl|CDD|133117 cd06907, M14_AGBL2-3_like, Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 11/82 (13%)

Query: 4   RLLEQCALS-FDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSFKIGT 62
            ++ + A   F  +S  +K+++SKE T R+ +WR  G++ S+TME+T+CG   G  + GT
Sbjct: 182 LMMSKNAPDKFSFRSCKFKVQKSKEGTGRVVMWRL-GILNSFTMEATFCGSTLGR-RKGT 239

Query: 63  K------ESM--KIVRGLIEFC 76
                  ESM       L+++C
Sbjct: 240 HFTTSDLESMGYHFCDTLLDYC 261

Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain. Length = 261

>gnl|CDD|133116 cd06906, M14_Nna1, Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases

 Score = 57.1 bits (138), Expect = 8e-11
 Identities = 20/40 (50%), Positives = 32/40 (80%), Gaps = 1/40 (2%)

Query: 70  RGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQES 109
           +GL+++    +K++P  YCD+HGHS KKN+F+YGCS +E+
Sbjct: 139 KGLLQY-LAAIKRSPLVYCDYHGHSRKKNVFMYGCSIKET 177

Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna1 cause Purkinje cell degeneration (pcd). The Nna1 CP domain is required to prevent the retinal photoreceptor loss and cerebellar ataxia phenotypes of pcd mice, and a functional zinc-binding domain is needed for Nna-1 to support neuron survival in these mice. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain. Length = 278

>gnl|CDD|133117 cd06907, M14_AGBL2-3_like, Peptidase M14-like domain of ATP/GTP binding protein AGBL-2 and AGBL-3, and related proteins

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 3/30 (10%)

Query: 86  FYCDFHGHSLKKNIFLYGCSSQ---ESWLS 112
            YCD HGHS K N+F+YGC ++   E WL 
Sbjct: 147 LYCDLHGHSRKNNVFMYGCENKLNPEKWLH 176

Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain. Length = 261

>gnl|CDD|199841 cd03856, M14_Nna1_like, Peptidase M14-like domain of ATP/GTP binding proteins, cytosolic carboxypeptidases and related proteins

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 69  VRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQE 108
           VR  +            F  DFHG   K ++F  GC   +
Sbjct: 139 VRDKMTS-IVQGGGKIVFAVDFHGTFRKHDVFYTGCDDHD 177

Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna1 cause Purkinje cell degeneration (pcd). The Nna1 CP domain is required to prevent the retinal photoreceptor loss and cerebellar ataxia phenotypes of pcd mice, and a functional zinc-binding domain is needed for Nna-1 to support neuron survival in these mice. Nna1-like proteins from the different phyla are highly diverse, but they all contain a characteristic N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain. Length = 258

>gnl|CDD|199841 cd03856, M14_Nna1_like, Peptidase M14-like domain of ATP/GTP binding proteins, cytosolic carboxypeptidases and related proteins

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 12/62 (19%)

Query: 9   CALSFDPKSSHYKIERSKES-----TARITIWREYGVVRSYTMESTYCGFDQGSFKIGTK 63
              S+      +K E    S      A+  +   Y V  S T E      DQG  +IG +
Sbjct: 193 AETSWV-----FKTENKSASSPDRGIAKQYVADHYKV-HSVTYEVGDNTNDQGK-QIGRQ 245

Query: 64  ES 65
             
Sbjct: 246 LI 247

Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna1 cause Purkinje cell degeneration (pcd). The Nna1 CP domain is required to prevent the retinal photoreceptor loss and cerebellar ataxia phenotypes of pcd mice, and a functional zinc-binding domain is needed for Nna-1 to support neuron survival in these mice. Nna1-like proteins from the different phyla are highly diverse, but they all contain a characteristic N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain. Length = 258

>gnl|CDD|199860 cd06236, M14_AGBL5_like, Peptidase M14-like domain of ATP/GTP binding protein (AGBL)-5 and related proteins

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 69  VRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYG 103
            + L+ +     +    FY D HGH+ K+  F+YG
Sbjct: 154 AKALLLYLHEHFESGLAFYIDLHGHASKRGCFIYG 188

Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain. Length = 308

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
cd06906	278	M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervo	99.92
cd06907	261	M14_AGBL2-3_like Peptidase M14-like domain of ATP/	99.89
cd06236	304	M14_AGBL5_like Peptidase M14-like domain of ATP/GT	99.82
cd06235	258	M14_Nna1_like_2 Subgroup of the Peptidase M14-like	99.78
cd06908	261	M14_AGBL4_like Peptidase M14-like domain of ATP/GT	99.76
KOG3641|consensus	650		99.55
KOG3641|consensus	650		99.54
cd06906	278	M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervo	99.53
cd06907	261	M14_AGBL2-3_like Peptidase M14-like domain of ATP/	99.5
cd06236	304	M14_AGBL5_like Peptidase M14-like domain of ATP/GT	99.45
cd03856	269	M14_Nna1_like Peptidase M14-like domain of Nna-1 (	99.37
cd06235	258	M14_Nna1_like_2 Subgroup of the Peptidase M14-like	99.33
cd06908	261	M14_AGBL4_like Peptidase M14-like domain of ATP/GT	99.28
cd03856	269	M14_Nna1_like Peptidase M14-like domain of Nna-1 (	99.04
cd06234	263	M14_Nna1_like_1 A bacterial subgroup of the Peptid	98.27
cd06239	231	Peptidase_M14-like_1_2 Peptidase M14-like domain o	94.4
cd00596	196	Peptidase_M14_like The M14 family of metallocarbox	92.79
cd06234	263	M14_Nna1_like_1 A bacterial subgroup of the Peptid	92.47
PF00246	279	Peptidase_M14: Zinc carboxypeptidase This is famil	89.5
cd06237	244	M14_Nna1_like_3 A bacterial subgroup of the Peptid	89.18
cd06248	304	M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/	88.85
smart00631	277	Zn_pept Zn_pept.	88.23
cd03860	294	M14_CP_A-B_like The Peptidase M14 Carboxypeptidase	83.87
cd06247	298	M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO	82.58
cd03858	374	M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub	81.81
cd06244	268	Peptidase_M14-like_1_7 Peptidase M14-like domain o	81.17
cd06231	236	Peptidase_M14-like_4 A functionally uncharacterize	80.43

>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins

Probab=99.92  E-value=5e-26  Score=185.23  Aligned_cols=77  Identities=47%  Similarity=0.717  Sum_probs=73.6

Q ss_pred             ChhhHHhHcCCCccCCCCeecccccccccceEEEeeeecceeeeeeeccccccccCCc---cccchhHHHHHHHHHHHHH
Q psy3963           1 MLSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSF---KIGTKESMKIVRGLIEFCT   77 (128)
Q Consensus         1 ~~P~lls~~~p~Fs~~~C~F~v~k~Ke~TaRV~~~~~~gi~~syTlE~Sf~G~dlg~~---kf~~kdL~pigk~L~e~l~   77 (128)
                      +||+||++++|.|+|++|+|.++|+||+||||++|+++||++|||||+||+|+++|.+   +|+++||++||+.+|+.|.
T Consensus       198 ~fP~ll~~~~~~Fs~~~C~F~~~k~K~gTaRv~~~~~~~i~~syTlE~Sf~G~~~g~~~g~~f~~~~~~~~G~~~c~~l~  277 (278)
T cd06906         198 TLPKILSHIAPAFSMSSCSFVVEKSKESTARVVVWREIGVQRSYTMESTLCGCDQGKYKGLQIGTKELEEMGAKFCVGLL  277 (278)
T ss_pred             HHHHHHHhcCCccchhhCCccCCCCCCCCeeEehhhhcCCceEEEEEEEeccccccCcCceecCHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999999999999999999999999875   4999999999999999874

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna

>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins

Probab=99.89  E-value=7.6e-24  Score=171.19  Aligned_cols=78  Identities=26%  Similarity=0.442  Sum_probs=73.0

Q ss_pred             ChhhHHhHcCC-CccCCCCeecccccccccceEEEeeeecceeeeeeeccccccccCCc---cccchhHHHHHHHHHHHH
Q psy3963           1 MLSRLLEQCAL-SFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSF---KIGTKESMKIVRGLIEFC   76 (128)
Q Consensus         1 ~~P~lls~~~p-~Fs~~~C~F~v~k~Ke~TaRV~~~~~~gi~~syTlE~Sf~G~dlg~~---kf~~kdL~pigk~L~e~l   76 (128)
                      +||+||++++| .|+|++|+|.++|+||+||||++|+++++ +||||||||+|+++|++   +|+++|++++|+++++.|
T Consensus       179 ~fp~l~~~~~~~~F~~~~c~F~~~~~k~~t~Rv~~~~~~~~-~syTlE~s~~G~~~~~~~~~~f~~~~~~~~G~~~~~~l  257 (261)
T cd06907         179 VFPLMMSKNAPDKFSFRSCKFKVQKSKEGTGRVVMWRLGIL-NSFTMEATFCGSTLGRRKGTHFTTSDLESMGYHFCDTL  257 (261)
T ss_pred             HHHHHHHhcCccceecccCCccCCCCCCCCceEEhhhhcCc-eEEEEeeEccccccCCcCCcccCHHHHHHHHHHHHHHH
Confidence            59999999999 89999999999999999999999999888 99999999999998863   599999999999999998


Q ss_pred             HHH
Q psy3963          77 TRV   79 (128)
Q Consensus        77 ~~l   79 (128)
                      .++
T Consensus       258 ldy  260 (261)
T cd06907         258 LDY  260 (261)
T ss_pred             Hhh
Confidence            763

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N

>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins

Probab=99.82  E-value=5.3e-21  Score=157.49  Aligned_cols=77  Identities=19%  Similarity=0.328  Sum_probs=70.1

Q ss_pred             ChhhHHhHcCCCccCCCCeeccc----------ccccccceEEEeeeecceeeeeeeccccccccC--------------
Q psy3963           1 MLSRLLEQCALSFDPKSSHYKIE----------RSKESTARITIWREYGVVRSYTMESTYCGFDQG--------------   56 (128)
Q Consensus         1 ~~P~lls~~~p~Fs~~~C~F~v~----------k~Ke~TaRV~~~~~~gi~~syTlE~Sf~G~dlg--------------   56 (128)
                      +||+||++++|.|+|.+|+|.++          ++||+||||++|+++||++||||||||+|..+.              
T Consensus       200 ~fp~l~~~~~~~F~~~~c~F~~~~m~~~d~~~~~~k~gt~Rv~~~~~~~i~~syTlE~s~~~~~~~~~~~~~~~~~~~~~  279 (304)
T cd06236         200 LFPKLISLNSPHFDFDGCNFSEKNMYAKDKRDGLSKEGSGRVAVYKATGIIHSYTLECNYNTGRIVNTVPAASGDTPPPP  279 (304)
T ss_pred             HHHHHHHhcCcccccccceeccccccccccccccCcCCcchhhHhhhhCCceEEEEEEecccccccccccccccCCcccc
Confidence            59999999999999999999985          789999999999999999999999999999763              


Q ss_pred             ---CccccchhHHHHHHHHHHHHH
Q psy3963          57 ---SFKIGTKESMKIVRGLIEFCT   77 (128)
Q Consensus        57 ---~~kf~~kdL~pigk~L~e~l~   77 (128)
                         .++|++++++.+|++++..+.
T Consensus       280 ~~~~~~~t~~~~~~~G~~~~~~~l  303 (304)
T cd06236         280 NGFPPKYTITDFEQVGRAIAVAAL  303 (304)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhc
Confidence               245999999999999988753

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal

>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins

Probab=99.78  E-value=6.4e-20  Score=147.35  Aligned_cols=77  Identities=29%  Similarity=0.595  Sum_probs=73.0

Q ss_pred             ChhhHHhHcCCCccCCCCeecccccccccceEEEeeeecceeeeeeeccccccccCCc---cccchhHHHHHHHHHHHHH
Q psy3963           1 MLSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSF---KIGTKESMKIVRGLIEFCT   77 (128)
Q Consensus         1 ~~P~lls~~~p~Fs~~~C~F~v~k~Ke~TaRV~~~~~~gi~~syTlE~Sf~G~dlg~~---kf~~kdL~pigk~L~e~l~   77 (128)
                      +||++|++.+|.|++.+|+|+++++|++||||++|++++|++|||||+||+|++.++.   +|+++|+.++|+++++.|.
T Consensus       178 ~~p~~~~~~~~~f~~~~c~f~~~~~k~~tar~~~~~~~~~~~syTlE~sf~g~~~~~~~~~~~~~~~~~~~G~~~~~al~  257 (258)
T cd06235         178 LFPKLLSKLCPYFSFSSCSFKVQKDKEGTARVALWRELGIPNSYTLETSFGGYDKGNRAGTHFTIEDLKEIGQDICKALL  257 (258)
T ss_pred             HHHHHHHhhCcccCccccccCCCCCCCCcHHHHHHHHcCCceEEEEeeeccccccCCCcCCCCCHHHHHHHHHHHHHHHh
Confidence            4899999999999999999999999999999999999999999999999999998853   5999999999999998874

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc

>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins

Probab=99.76  E-value=1.5e-19  Score=146.04  Aligned_cols=79  Identities=20%  Similarity=0.285  Sum_probs=73.7

Q ss_pred             ChhhHHhHcCCCccCCCCeecccccccccceEEEeeeecc-eeeeeeeccccccccCC----ccccchhHHHHHHHHHHH
Q psy3963           1 MLSRLLEQCALSFDPKSSHYKIERSKESTARITIWREYGV-VRSYTMESTYCGFDQGS----FKIGTKESMKIVRGLIEF   75 (128)
Q Consensus         1 ~~P~lls~~~p~Fs~~~C~F~v~k~Ke~TaRV~~~~~~gi-~~syTlE~Sf~G~dlg~----~kf~~kdL~pigk~L~e~   75 (128)
                      .||.+|++.+|.|++.+|.|.++++|++||||++|+++|+ ++|||||+||+|++.+.    .+|+++|++++|+++++.
T Consensus       177 ~fp~~l~~~~~~F~~~~~~f~~~~~k~gtar~~~~~~~~~~~~s~TlE~sf~g~~~~~~~~~~~f~~~~~~~~G~~~~~~  256 (261)
T cd06908         177 VFPKLLAQNAEDFSMEHTMFNRDAVKAGTGRRFLGSLLSDNVNCYTLEVSFYGYNLKGTTGITPYTEEGYMRLGRNLART  256 (261)
T ss_pred             HHHHHHHHhCHHhcccCCcccCCCCCCChHHHHHHHHhCCCceEEEEeecCCcccCCCCCCccccCHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999995 89999999999999885    359999999999999999


Q ss_pred             HHHH
Q psy3963          76 CTRV   79 (128)
Q Consensus        76 l~~l   79 (128)
                      +.++
T Consensus       257 ~~~~  260 (261)
T cd06908         257 FLDY  260 (261)
T ss_pred             HHhh
Confidence            8753

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal

>KOG3641|consensus

Probab=99.55  E-value=3e-15  Score=131.21  Aligned_cols=84  Identities=21%  Similarity=0.362  Sum_probs=73.2

Q ss_pred             cccccceEEEeeeecceeeeeeeccccccccCC-ccccchhHHHHHHHHHHHHHHHhc---CCCeEEEecCCCCCcccee
Q psy3963          25 SKESTARITIWREYGVVRSYTMESTYCGFDQGS-FKIGTKESMKIVRGLIEFCTRVLK---KTPYFYCDFHGHSLKKNIF  100 (128)
Q Consensus        25 ~Ke~TaRV~~~~~~gi~~syTlE~Sf~G~dlg~-~kf~~kdL~pigk~L~e~l~~ll~---~~~~~y~D~HGHSrk~N~F  100 (128)
                      .+....-|.|.+..||+++ ..+||++|.|+|+ |..+.++++|..++.+++|.++..   ..+++|||+||||+|.|+|
T Consensus       468 e~~vFKI~PMLNPDGV~~G-nyRCSL~G~DLNR~w~tps~~shPsi~~~k~li~~l~~~~~~~p~~Y~DlHgHSqK~n~F  546 (650)
T KOG3641|consen  468 ESYVFKIVPMLNPDGVIVG-NYRCSLMGLDLNRMWSTPSPASHPSIYAVKQLIQQLSNVPHSRPLGYVDLHGHSQKVNHF  546 (650)
T ss_pred             hheeEecccccCCCceecc-cceeccccchhhhhcCCCCcccchhHHhHHHHHhhhhcccccCceEeecccccccccceE
Confidence            3444555899999999999 8899999999997 779999999998888888877654   4699999999999999999


Q ss_pred             EeccCCCCC
Q psy3963         101 LYGCSSQES  109 (128)
Q Consensus       101 ~yGc~~~~~  109 (128)
                      ||||...+.
T Consensus       547 vYGnv~~~~  555 (650)
T KOG3641|consen  547 VYGNVNEER  555 (650)
T ss_pred             EecCcCCch
Confidence            999998776

>KOG3641|consensus

Probab=99.54  E-value=4.2e-15  Score=130.29  Aligned_cols=77  Identities=31%  Similarity=0.525  Sum_probs=72.3

Q ss_pred             ChhhHHhHcCCC-ccCCCCeecccccccccceEEEeeeecceeeeeeeccccccccCCc---cccchhHHHHHHHHHHHH
Q psy3963           1 MLSRLLEQCALS-FDPKSSHYKIERSKESTARITIWREYGVVRSYTMESTYCGFDQGSF---KIGTKESMKIVRGLIEFC   76 (128)
Q Consensus         1 ~~P~lls~~~p~-Fs~~~C~F~v~k~Ke~TaRV~~~~~~gi~~syTlE~Sf~G~dlg~~---kf~~kdL~pigk~L~e~l   76 (128)
                      +||++|.+++|. |+|++|.|.++|.||+|+||++| ++|+..+||||++++|.+.+.+   ++++++++++|+..++.|
T Consensus       566 lfpk~L~~~apskF~~SSc~Fs~~k~Ke~t~rv~~w-~ig~~tsytlest~~g~s~g~~~~~~l~t~~le~~~~~~~~tl  644 (650)
T KOG3641|consen  566 LFPKPLCSNAPSKFSFSSCPFSVHKSKEGTLRVSVW-RIGVSTSYTLESTFSGESVGVIGKTLLGTEDLEPCIKTRLQTL  644 (650)
T ss_pred             cchhhhhhcCCCccccccCcchhhhhcccccceeee-cccceeeeeEeeccCcceeeeecceeechhHHHHHhHHHhhhh
Confidence            689999999996 99999999999999999999999 6999999999999999998854   499999999999999988


Q ss_pred             HH
Q psy3963          77 TR   78 (128)
Q Consensus        77 ~~   78 (128)
                      .+
T Consensus       645 l~  646 (650)
T KOG3641|consen  645 LR  646 (650)
T ss_pred             hc
Confidence            65

>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins

Probab=99.53  E-value=1.4e-14  Score=118.22  Aligned_cols=78  Identities=29%  Similarity=0.628  Sum_probs=63.2

Q ss_pred             EEEeeeecceeeeeeeccccccccCC-ccccchhHHHHHHHH---HHHHHHHhcCCCeEEEecCCCCCccceeEeccCCC
Q psy3963          32 ITIWREYGVVRSYTMESTYCGFDQGS-FKIGTKESMKIVRGL---IEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQ  107 (128)
Q Consensus        32 V~~~~~~gi~~syTlE~Sf~G~dlg~-~kf~~kdL~pigk~L---~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~~  107 (128)
                      |.|-+..|+.++. ..|+..|.|+|+ |..+....+|.+.++   ++++.+ .++++.+|+|+||||+|+|+|+|||...
T Consensus        98 vPmlNPDGvv~Gn-~Rc~~~G~DLNR~w~~p~~~~~P~i~~~k~l~~~l~~-~~~~~~~yiDlHghs~~~~~F~yG~~~~  175 (278)
T cd06906          98 VPMLNPDGVINGN-HRCSLSGEDLNRQWQSPNPELHPTIYHTKGLLQYLAA-IKRSPLVYCDYHGHSRKKNVFMYGCSIK  175 (278)
T ss_pred             EeeecCccceecc-cccCCCCCCCCCCCCCCCcccChHHHHHHHHHHHHHH-hCCCceEEEeecccccccceEEeccCCC
Confidence            9999999999985 689999999997 556666777755544   455443 2567999999999999999999999987


Q ss_pred             CCcc
Q psy3963         108 ESWL  111 (128)
Q Consensus       108 ~~~~  111 (128)
                      +++.
T Consensus       176 ~~~~  179 (278)
T cd06906         176 ETVW  179 (278)
T ss_pred             cchh
Confidence            7653

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna

>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins

Probab=99.50  E-value=3e-14  Score=115.45  Aligned_cols=79  Identities=28%  Similarity=0.539  Sum_probs=68.1

Q ss_pred             eEEEeeeecceeeeeeeccccccccCC-ccccchhHHHHHHHHHHHHHHHhc-CCCeEEEecCCCCCccceeEeccCCCC
Q psy3963          31 RITIWREYGVVRSYTMESTYCGFDQGS-FKIGTKESMKIVRGLIEFCTRVLK-KTPYFYCDFHGHSLKKNIFLYGCSSQE  108 (128)
Q Consensus        31 RV~~~~~~gi~~syTlE~Sf~G~dlg~-~kf~~kdL~pigk~L~e~l~~ll~-~~~~~y~D~HGHSrk~N~F~yGc~~~~  108 (128)
                      -|.|-+..|+..+.+ .++..|.|+|| |..+.+..+|.++++++.+..+.+ +++.+|+||||||++.|+|+|||....
T Consensus        91 IvPmlNPDGv~~G~~-R~~~~G~DLNR~w~~p~~~~~P~i~~~k~li~~l~~~~~i~~ylDlHghs~~~~~F~yG~~~~~  169 (261)
T cd06907          91 IVPMLNPDGVIVGNY-RCSLAGRDLNRNYKTPLKDSFPTIWYTKNMVKRLLEEREVILYCDLHGHSRKNNVFMYGCENKL  169 (261)
T ss_pred             EEEeecCccccccCC-cCCCcCCCCCcCCCCCCcccCchHHHHHHHHHHHHhcCCeEEEEEeccchhccceEeecCCCCC
Confidence            389999999999955 99999999997 667778899998888888776553 689999999999999999999998766


Q ss_pred             Cc
Q psy3963         109 SW  110 (128)
Q Consensus       109 ~~  110 (128)
                      .+
T Consensus       170 ~~  171 (261)
T cd06907         170 NP  171 (261)
T ss_pred             CH
Confidence            54

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N

>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins

Probab=99.45  E-value=1e-13  Score=114.43  Aligned_cols=76  Identities=20%  Similarity=0.329  Sum_probs=67.2

Q ss_pred             EEEeeeecceeeeeeeccccccccCC-ccccchhHHHHHHHHHHHHHHHh-cCCCeEEEecCCCCCccceeEeccCCCC
Q psy3963          32 ITIWREYGVVRSYTMESTYCGFDQGS-FKIGTKESMKIVRGLIEFCTRVL-KKTPYFYCDFHGHSLKKNIFLYGCSSQE  108 (128)
Q Consensus        32 V~~~~~~gi~~syTlE~Sf~G~dlg~-~kf~~kdL~pigk~L~e~l~~ll-~~~~~~y~D~HGHSrk~N~F~yGc~~~~  108 (128)
                      |.|.+..|+..+.+ +++..|.|+|+ |.-+....+|.++++.+++..+. ++++.+|+|+||||+|+|+|+|||...+
T Consensus       114 vPmlNPDGv~~g~~-R~~~~G~DLNR~y~~p~~~~~Pei~aik~~i~~~~~~~~i~~yiDlH~hs~~~~~F~Yg~~~~~  191 (304)
T cd06236         114 IPMLNPDGVYRGHY-RTDTRGVNLNRVYLNPDPELHPSIYAIKKLILYLHEESRLAFYIDLHAHASKRGCFIYGNALED  191 (304)
T ss_pred             EEeEcccccccCcc-ccCCcCCCcCcCCCCCCcccCHHHHHHHHHHHHhhccCCceEEEEecccccccceEeeecCCCh
Confidence            89999999998876 89999999997 56677889999999999998765 4689999999999999999999998643

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal

>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins

Probab=99.37  E-value=1.4e-13  Score=111.42  Aligned_cols=75  Identities=31%  Similarity=0.436  Sum_probs=70.3

Q ss_pred             ChhhHHhHcCCCccCCCCeeccccccc-----ccceEEEeeeecceeeeeeeccccccccCCc---cccchhHHHHHHHH
Q psy3963           1 MLSRLLEQCALSFDPKSSHYKIERSKE-----STARITIWREYGVVRSYTMESTYCGFDQGSF---KIGTKESMKIVRGL   72 (128)
Q Consensus         1 ~~P~lls~~~p~Fs~~~C~F~v~k~Ke-----~TaRV~~~~~~gi~~syTlE~Sf~G~dlg~~---kf~~kdL~pigk~L   72 (128)
                      ++|.+++..++.|++.+|.|.++++++     +|||+.+|+++||++|||+|+|++|.++++.   +|+.+++.++|+.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~gtsr~~~~~~~~i~~syTlE~~~~g~~~~~~~~~~~~~~~~~~~g~~~  265 (269)
T cd03856         186 IIPKMLSQNAPLFCMFGCSFKVEKSKASDPDRGTGRVVVAKQIKVQHSYTMEVTFNGNDQGNYKGLQYTTQLLPEMGRQF  265 (269)
T ss_pred             HHHHHHHhhChhhhhcCCCcCCCcCCcccCCCChHHHHHHHhcCCcEEEEEecCCCCcccCCcCCCCCChhhHHHHHHHH
Confidence            479999999999999999999999999     9999999999999999999999999998864   59999999999998


Q ss_pred             HHH
Q psy3963          73 IEF   75 (128)
Q Consensus        73 ~e~   75 (128)
                      ++.
T Consensus       266 ~~~  268 (269)
T cd03856         266 AVA  268 (269)
T ss_pred             Hhh
Confidence            875

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M

>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins

Probab=99.33  E-value=2e-12  Score=104.04  Aligned_cols=79  Identities=27%  Similarity=0.475  Sum_probs=68.5

Q ss_pred             EEEeeeecceeeeeeeccccccccCC-ccccchhHHHHHHHHHHHHHHHhc-CCCeEEEecCCCCCccceeEeccCCCCC
Q psy3963          32 ITIWREYGVVRSYTMESTYCGFDQGS-FKIGTKESMKIVRGLIEFCTRVLK-KTPYFYCDFHGHSLKKNIFLYGCSSQES  109 (128)
Q Consensus        32 V~~~~~~gi~~syTlE~Sf~G~dlg~-~kf~~kdL~pigk~L~e~l~~ll~-~~~~~y~D~HGHSrk~N~F~yGc~~~~~  109 (128)
                      |.|.+..|+..+++ +++..|.|+|+ |..+....+|.++++++.+.++.+ +++.+|+|+||||++.|+|+|||....+
T Consensus        91 iPm~NPDG~~~g~~-R~n~~GvDLNR~w~~p~~~~~PE~~~~~~~i~~~~~~~~~~~~iDlH~~s~~~~~F~yg~~~~~~  169 (258)
T cd06235          91 IPMLNPDGVIHGNY-RCSLSGIDLNRQWKNPDKKLHPEIYHVKQLIKKLSQERNIALFIDLHGHSRKKNSFMYGCSNSDD  169 (258)
T ss_pred             EccccccceeecCC-cCCCCCCCcCCCCCCCCcccCcHHHHHHHHHHHHhccCCceEEEecccccccCCeeeecCCCCCc
Confidence            88999999987654 88999999997 556666889999999999888743 6899999999999999999999998877


Q ss_pred             cc
Q psy3963         110 WL  111 (128)
Q Consensus       110 ~~  111 (128)
                      |.
T Consensus       170 ~~  171 (258)
T cd06235         170 PL  171 (258)
T ss_pred             HH
Confidence            74

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc

>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins

Probab=99.28  E-value=5.2e-12  Score=102.25  Aligned_cols=76  Identities=18%  Similarity=0.315  Sum_probs=66.8

Q ss_pred             EEEeeeecceeeeeeeccccccccCC-ccccchhHHHHHHHHHHHHHHHhc---CCCeEEEecCCCCCccceeEeccCCC
Q psy3963          32 ITIWREYGVVRSYTMESTYCGFDQGS-FKIGTKESMKIVRGLIEFCTRVLK---KTPYFYCDFHGHSLKKNIFLYGCSSQ  107 (128)
Q Consensus        32 V~~~~~~gi~~syTlE~Sf~G~dlg~-~kf~~kdL~pigk~L~e~l~~ll~---~~~~~y~D~HGHSrk~N~F~yGc~~~  107 (128)
                      |.|.+..|+..+ ..+++..|.|+|| |..+....+|.++++.+++.++.+   +++.+|+|+||||++.|+|+|||..+
T Consensus        89 vP~~NPDGv~~g-n~R~~~~G~DLNR~w~~p~~~~~PEv~av~~~i~~~~~~~~~~i~~~lD~H~hs~~~~~F~yG~~~~  167 (261)
T cd06908          89 VPMLNPDGVFLG-NYRCSLMGHDLNRHWHDPSPWAHPTLHAVKNLLKELDNDSTTQLDFYIDLHAHSSLMNCFIYGNTYD  167 (261)
T ss_pred             EeeecCcceeec-CCcCcCcCcCCCCCCCCCCcccChHHHHHHHHHHHhhhccccCeeEEEEeeccccccceeeccccCC
Confidence            999999999988 4589999999997 557777889999999999988653   58999999999999999999999865


Q ss_pred             C
Q psy3963         108 E  108 (128)
Q Consensus       108 ~  108 (128)
                      .
T Consensus       168 ~  168 (261)
T cd06908         168 D  168 (261)
T ss_pred             c
Confidence            4

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal

>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins

Probab=99.04  E-value=3.2e-10  Score=91.85  Aligned_cols=76  Identities=30%  Similarity=0.592  Sum_probs=64.3

Q ss_pred             EEEeeeecceeeeeeeccccccccCC-ccccchhHHHHHHHHHHHHHHHh--cCCCeEEEecCCCCCccceeEeccCCCC
Q psy3963          32 ITIWREYGVVRSYTMESTYCGFDQGS-FKIGTKESMKIVRGLIEFCTRVL--KKTPYFYCDFHGHSLKKNIFLYGCSSQE  108 (128)
Q Consensus        32 V~~~~~~gi~~syTlE~Sf~G~dlg~-~kf~~kdL~pigk~L~e~l~~ll--~~~~~~y~D~HGHSrk~N~F~yGc~~~~  108 (128)
                      |.+.+..|+..+. .+++..|.|+|+ |.-+....+|.++++.+.+.++.  +++|.+|+|+||||+|.|+|+|||...+
T Consensus        99 vP~~NPDG~~~g~-~R~n~~G~DLNR~~~~p~~~~~pE~~~~~~~~~~~~~~~~~~~~~idlH~~~~~~~~f~yG~~~~~  177 (269)
T cd03856          99 VPMLNPDGVIRGN-YRCSLSGVDLNRQWQNPSPDLHPEIYLVKGLMLYLAAGKRGVLFYCDFHGHSRKKNVFMYGCSFKD  177 (269)
T ss_pred             EeeeCCccccccC-CcCCCCCCCcCCCCCCCCCCCCCCHHHHHHHHHHHHhccCCceEEEEecCCCccCceEeecCCCch
Confidence            8899999998763 488899999997 55666678899999999988764  4589999999999999999999998644

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M

>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins

Probab=98.27  E-value=1.7e-06  Score=70.23  Aligned_cols=75  Identities=16%  Similarity=0.218  Sum_probs=61.9

Q ss_pred             EEEeeeecceeeeeeeccccccccCC-ccccchhHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccCCCCCc
Q psy3963          32 ITIWREYGVVRSYTMESTYCGFDQGS-FKIGTKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQESW  110 (128)
Q Consensus        32 V~~~~~~gi~~syTlE~Sf~G~dlg~-~kf~~kdL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~~~~~  110 (128)
                      |.+-+..|...+.| +++..|.|+|| |..+.....|.++++.+.+.+   .+|.+|+|+|||+...++|.|||.....|
T Consensus       102 vP~~NPDG~~~g~~-R~n~~GvDLNRnw~~p~~~s~PEt~av~~~~~~---~~~~~~ld~Hs~~~~py~f~~g~~~~p~~  177 (263)
T cd06234         102 VPNMNPDGSARGHL-RTNAAGANLNREWAEPSAERSPEVFAVRQRMEE---TGVDFFLDVHGDEALPYNFIAGSEGVPGW  177 (263)
T ss_pred             EeeecchhhhhcCC-ccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHh---cCCeEEEEeCCCCCCCccEeccCCCCCCc
Confidence            77888888887754 67889999997 445556678999999988764   57999999999999999999999865545

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.

>cd06239 Peptidase_M14-like_1_2 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)

Probab=94.40  E-value=0.1  Score=41.72  Aligned_cols=67  Identities=21%  Similarity=0.218  Sum_probs=46.7

Q ss_pred             EEEeeeecceeeeeeeccccccccCCccccchhHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccCCCCCc
Q psy3963          32 ITIWREYGVVRSYTMESTYCGFDQGSFKIGTKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQESW  110 (128)
Q Consensus        32 V~~~~~~gi~~syTlE~Sf~G~dlg~~kf~~kdL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~~~~~  110 (128)
                      |.+.+..|... +| +.+-.|.|+|+-. + ....|.++.+.+.+.+.   ++-++.|+|+++.-     |||..+++.
T Consensus        80 iP~lNPDG~~~-~~-R~N~~GvDLNRdf-~-~~s~PEtr~l~~~~~~~---~pd~~iDlH~~~~~-----y~~~~~~~~  146 (231)
T cd06239          80 IPMLNPDGAEA-YT-RVNANGVDLNRDA-Q-DLSQPESRLLRDVYDGF---QPDFCFNLHDQRTI-----YGVENTGKP  146 (231)
T ss_pred             EeccCccHHHH-cc-cCCCcCCcCCCCC-C-CCChHHHHHHHHHHHhc---CCEEEEEECCCCCc-----cCCCCCCCc
Confidence            55677777754 23 5667899999622 2 12367777777766543   69999999999975     999876654

The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th

>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity

Probab=92.79  E-value=0.39  Score=36.08  Aligned_cols=67  Identities=21%  Similarity=0.200  Sum_probs=45.0

Q ss_pred             eeeecceeeeeeeccccccccCCccccch-----hHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccCCCCC
Q psy3963          35 WREYGVVRSYTMESTYCGFDQGSFKIGTK-----ESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQES  109 (128)
Q Consensus        35 ~~~~gi~~syTlE~Sf~G~dlg~~kf~~k-----dL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~~~~  109 (128)
                      -+..|...+ .-..+-.|.|+|+ .|+..     ...+.++++.+.+.+   .++.+++|+|+.+   +.++|.+.....
T Consensus        47 ~NPdG~~~~-~~R~n~~g~DlNR-~f~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~idlH~~~---~~~~~p~~~~~~  118 (196)
T cd00596          47 LNPDGYEAV-NWRKNANGVDLNR-NFPGLWGKGPLSEPETRALAELIQQ---RKVDLYIDLHSGS---LGVLYPYSHSDT  118 (196)
T ss_pred             cccccceee-eEEeCCCCcCccC-CCCCcccCCCCCcHHHHHHHHHHHh---CCceEEEEEecCC---ceEEecCCCCCC
Confidence            444555442 1233445999985 33332     357888888887654   3799999999998   788888876543

Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring

>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins

Probab=92.47  E-value=0.09  Score=42.79  Aligned_cols=66  Identities=14%  Similarity=0.120  Sum_probs=47.5

Q ss_pred             hhhHHhHcCCCccCCCCeecccccccccceEEEe-----eeecceeeeeeeccccccccCCcc---ccchhHHHHHHH
Q psy3963           2 LSRLLEQCALSFDPKSSHYKIERSKESTARITIW-----REYGVVRSYTMESTYCGFDQGSFK---IGTKESMKIVRG   71 (128)
Q Consensus         2 ~P~lls~~~p~Fs~~~C~F~v~k~Ke~TaRV~~~-----~~~gi~~syTlE~Sf~G~dlg~~k---f~~kdL~pigk~   71 (128)
                      |+..|.+.+|.|.   ..|..++.+.+.|+..+-     .+++ ..|||||.+|-|.+.++-.   .+.+-....|..
T Consensus       188 ~~~al~~~~~~f~---~~~~y~~~~~g~~~~~~a~~~~~~~~~-~~s~TlEmpf~~~~~~p~~~~gw~~~r~~~lg~~  261 (263)
T cd06234         188 FKAALLRASPDFQ---TEHGYPKDAPGQANLTIATNWVAHRFD-CLSMTLEMPFKDNADLPDPEVGWSPERSKALGAD  261 (263)
T ss_pred             HHHHHHHhCcccc---cccccCCCCCCchhHHHHHHHHHhhcC-ceEEEEEeecCCccCCCCcccCcCHHHHHHHHHh
Confidence            5778999999985   457777888777665443     4788 5999999999998776522   445555555543

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.

>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification

Probab=89.50  E-value=0.34  Score=38.50  Aligned_cols=38  Identities=29%  Similarity=0.384  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccCC
Q psy3963          65 SMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSS  106 (128)
Q Consensus        65 L~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~  106 (128)
                      ..|.++++.+.+.+   .++.+++|+|+++...+ +-||...
T Consensus       153 sepEt~al~~~~~~---~~~~~~id~H~~~~~~~-~p~~~~~  190 (279)
T PF00246_consen  153 SEPETRALRNLIQD---WNPDFFIDFHSGGNAIL-YPYGYSY  190 (279)
T ss_dssp             TSHHHHHHHHHHHH---TTEEEEEEEEESSSEEE-ESESSSS
T ss_pred             hhhHHHHHHHHHhh---cceeEEEecccccccee-eeccccc
Confidence            47899998887654   79999999999998777 7787644

; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....

>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins

Probab=89.18  E-value=1.4  Score=35.33  Aligned_cols=68  Identities=18%  Similarity=0.173  Sum_probs=47.5

Q ss_pred             EEEeeeecceeeeeeeccccccccCCccccchhHHHHHHHHHHHHHHHhc--CCCeEEEecCCCCCccceeEeccC
Q psy3963          32 ITIWREYGVVRSYTMESTYCGFDQGSFKIGTKESMKIVRGLIEFCTRVLK--KTPYFYCDFHGHSLKKNIFLYGCS  105 (128)
Q Consensus        32 V~~~~~~gi~~syTlE~Sf~G~dlg~~kf~~kdL~pigk~L~e~l~~ll~--~~~~~y~D~HGHSrk~N~F~yGc~  105 (128)
                      |.+.+..|+..+. -..+-.|.|+|+-..  ....|.++++.+++.++..  .++.++.|+|..+.  . ++|+..
T Consensus        97 vP~~NPDG~~~~~-wR~N~~GvDLNRnw~--~~sepEt~a~~~~~~~~~~~~~~~~~~id~Hs~~~--~-i~~~~~  166 (244)
T cd06237          97 VPNMNPDGVDLGH-WRHNANGIDLNRDWS--NFNQPETRAIRDYLVRLVKEGGKIVFALDFHSTWH--D-VFYTMP  166 (244)
T ss_pred             EEeeCcchhhcCC-ccCCCCCcCCCCCCC--CCCCHHHHHHHHHHHHHhccCCCEEEEEEeccCCc--c-eEecCC
Confidence            6778888887652 367779999996321  1235778888888876543  48999999986543  3 667763

The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.

>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E

Probab=88.85  E-value=1.2  Score=36.64  Aligned_cols=40  Identities=20%  Similarity=0.321  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHHHHHHhc-CCCeEEEecCCCCCccceeEeccCC
Q psy3963          64 ESMKIVRGLIEFCTRVLK-KTPYFYCDFHGHSLKKNIFLYGCSS  106 (128)
Q Consensus        64 dL~pigk~L~e~l~~ll~-~~~~~y~D~HGHSrk~N~F~yGc~~  106 (128)
                      -.+|.++++.+++.++.. +++.+|.|+|+++   ++++|-...
T Consensus       166 ~sEpEt~av~~~~~~~~~~~~~~~~l~~Hs~~---~~i~~P~~~  206 (304)
T cd06248         166 GDAPEAKALAAFLNKLAEGQGIVGYIDWHSYS---QLILYPYGY  206 (304)
T ss_pred             CccHHHHHHHHHHHhccccCceEEEEEeccCc---ceEEecCcC
Confidence            457899999999887543 5799999999988   466665543

Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,

>smart00631 Zn_pept Zn_pept

Probab=88.23  E-value=1.2  Score=35.88  Aligned_cols=53  Identities=23%  Similarity=0.347  Sum_probs=36.0

Q ss_pred             cccccccCC-ccc--cc-------------hhHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccCC
Q psy3963          49 TYCGFDQGS-FKI--GT-------------KESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSS  106 (128)
Q Consensus        49 Sf~G~dlg~-~kf--~~-------------kdL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~  106 (128)
                      .-.|.|+|+ +..  ..             .-.+|.++++.+.+.+.  .++.+++|+|+++   +.++|+...
T Consensus       125 ~~~GvDLNRnf~~~w~~~~~p~~~~y~G~~~~sepEt~ai~~~~~~~--~~~~~~id~Hs~~---~~i~~p~~~  193 (277)
T smart00631      125 NCRGVDLNRNFPFHWGKTGNPCSETYAGPSPFSEPETKAVRDFIRSN--RRFVLYIDLHSYS---QLILYPYGY  193 (277)
T ss_pred             CCcCcccCCCCCCCCCCCCCCCCCCcCCCCCCCcHHHHHHHHHHHhc--CCeeEEEEeccCC---cEEEecCcC
Confidence            568999995 221  00             13467889988887653  2899999999996   455666443

>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily

Probab=83.87  E-value=2.1  Score=34.76  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEecc
Q psy3963          65 SMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGC  104 (128)
Q Consensus        65 L~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc  104 (128)
                      .+|.++++.+.+.+. ..++.+++|+|+++   ++++|..
T Consensus       160 sepEt~al~~~~~~~-~~~~~~~ld~Hs~~---~~i~~P~  195 (294)
T cd03860         160 SEPETRAVRDFLLSL-RGRIKAYLSLHSYG---QLILYPW  195 (294)
T ss_pred             chHHHHHHHHHHHhc-cccEEEEEEeccCC---ceEEcCC
Confidence            468899988887653 24799999999998   4666554

CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the

>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3

Probab=82.58  E-value=5.4  Score=32.99  Aligned_cols=39  Identities=13%  Similarity=0.148  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccCCC
Q psy3963          65 SMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQ  107 (128)
Q Consensus        65 L~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~~  107 (128)
                      .+|.++++.+++.+. +..+.+|.|+|+.+   +.++|....+
T Consensus       165 SEpEt~ai~~~~~~~-~~~i~~~l~~Hsyg---~~i~~P~g~~  203 (298)
T cd06247         165 SEPETKAVARLIESK-KSDILCYLTIHSYG---QLILLPYGYT  203 (298)
T ss_pred             CcHHHHHHHHHHHhc-CcceEEEEEeccCC---CeEEeCCcCC
Confidence            468999999988763 44688999999877   6777766544

4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.

>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs)

Probab=81.81  E-value=1.6  Score=36.67  Aligned_cols=51  Identities=14%  Similarity=0.202  Sum_probs=34.5

Q ss_pred             eccccccccCC-cc--cc-------chhHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEec
Q psy3963          47 ESTYCGFDQGS-FK--IG-------TKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYG  103 (128)
Q Consensus        47 E~Sf~G~dlg~-~k--f~-------~kdL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yG  103 (128)
                      ++.-.|.|+|+ +.  ..       ..-.+|.++++.+++.+   .++.++.|+|+.+.   .++|.
T Consensus       124 R~n~~GvDLNRnf~~~~~~~~~~G~~~~sepEt~al~~~~~~---~~~~~~i~~Hs~~~---~~~yp  184 (374)
T cd03858         124 RYNANGVDLNRNFPDLFFTNYRSSDNGPRQPETKAVMNWIKS---IPFVLSANLHGGAL---VANYP  184 (374)
T ss_pred             CCCCcceecccCCCcccccccccCCCcccCHHHHHHHHHHhh---CCceEEEEccCCce---EEEcc
Confidence            34458999995 22  21       11257888988887764   48999999999873   44543

The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr

>cd06244 Peptidase_M14-like_1_7 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)

Probab=81.17  E-value=5.8  Score=32.61  Aligned_cols=66  Identities=15%  Similarity=0.239  Sum_probs=41.8

Q ss_pred             EEEeeeecceeeeeeeccccccccCCccccchhHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccCC
Q psy3963          32 ITIWREYGVVRSYTMESTYCGFDQGSFKIGTKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSS  106 (128)
Q Consensus        32 V~~~~~~gi~~syTlE~Sf~G~dlg~~kf~~kdL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~  106 (128)
                      +.+-+..|...  .-+.+-.|.|+||-. . ..-+|.++++.+.+.+   -.+.++.|+||+.  ...|++-|..
T Consensus       115 ~P~~NPDG~~~--~~R~Na~G~DLNRD~-~-~~sqpEt~av~~~~~~---w~P~~~~dlHg~~--~~~~~~P~~~  180 (268)
T cd06244         115 NVTENPDGRVA--GTRENANGFDLNRDN-S-FQTQPETQAIVALIAE---WNPASFLDLHGYV--EGFLIEPCTP  180 (268)
T ss_pred             EecccCCccee--eeecCCCccccCCCC-C-cccCHHHHHHHHHHHH---hCCeEEEEeCCCC--CceEEcCCCC
Confidence            34455555533  247778999999722 1 1245677777776554   4789999999887  3344445643

The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th

>cd06231 Peptidase_M14-like_4 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs)

Probab=80.43  E-value=3.3  Score=33.06  Aligned_cols=53  Identities=19%  Similarity=0.258  Sum_probs=36.6

Q ss_pred             ccccccccCCccccchhHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEe
Q psy3963          48 STYCGFDQGSFKIGTKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLY  102 (128)
Q Consensus        48 ~Sf~G~dlg~~kf~~kdL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~y  102 (128)
                      .+..|.|+|+ .|+...-.+.++++.+.+.+. ..++.++.|||..+.....+.|
T Consensus        96 ~n~~g~DLNR-~F~~~~~~~E~~al~~~~~~~-~~~~~~~IDLH~~~~~~~~~~~  148 (236)
T cd06231          96 WNRNGIDPNR-SFRSESPSPEVRLLMEWLRRL-GAAFDLHIDLHEDTESTDTYNY  148 (236)
T ss_pred             CCCCCccccC-CCCCCCCCHHHHHHHHHHHHh-CCCcEEEEEeCCCCCCCCccee
Confidence            3457899985 344333457778888877653 3479999999998866665444

The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
3l2n_A	395	Peptidase M14, carboxypeptidase A; putative carbox	97.69
4a37_A	388	Metallo-carboxypeptidase; metallo-protease, hydrol	97.55
3k2k_A	403	Putative carboxypeptidase; structural genomics, jo	97.55
3l2n_A	395	Peptidase M14, carboxypeptidase A; putative carbox	96.69
3k2k_A	403	Putative carboxypeptidase; structural genomics, jo	95.22
2qvp_A	275	Uncharacterized protein; putative metallopeptidase	93.88
4a37_A	388	Metallo-carboxypeptidase; metallo-protease, hydrol	93.1
1dtd_A	303	Carboxypeptidase A2; carboxypeptidase A2, leech ca	92.46
1h8l_A	380	Carboxypeptidase GP180 residues 503-882; hydrolase	91.26
3prt_A	323	Carboxypeptidase T; hydrolase; 1.66A {Thermoactino	90.51
1z5r_A	306	Procarboxypeptidase B; exopeptidase, hydrolase; 1.	90.32
2c1c_A	312	Carboxypeptidase B; insect, metalloprotease, insen	89.03
1aye_A	401	PCPA2, procarboxypeptidase A2; serine protease, zy	88.73
3d4u_A	309	Tafia, carboxypeptidase B2; protease-inhibitor com	88.45
1jqg_A	433	Carboxypeptidase A; Pro-protein, hydrolase; 2.50A	88.11
3mn8_A	435	LP15968P; catalytic domain of alpha/beta-hydrolase	87.36
1kwm_A	402	Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A	86.89
1m4l_A	307	Carboxypeptidase A; metalloproteinase, metalloexop	86.67
2bo9_A	308	Carboxypeptidase A4; metallocarboxypeptidase, X-RA	86.35
3b2y_A	275	Metallopeptidase containing CO-catalytic metalloa	85.5
2boa_A	404	Carboxypeptidase A4; metalloprocarboxypeptidase, X	85.4
1uwy_A	426	Carboxypeptidase M; metallopeptidase, GPI-anchor,	84.99
2nsm_A	439	Carboxypeptidase N catalytic chain; caroxypeptidas	83.1

>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A, structural genomics, joint CENT structural genomics, JCSG; 2.39A {Shewanella denitrificans}

Probab=97.69  E-value=1.4e-05  Score=66.80  Aligned_cols=75  Identities=17%  Similarity=0.270  Sum_probs=57.4

Q ss_pred             EEEeeeecceeeeeeeccccccccCC-ccccchhHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccCCCCCc
Q psy3963          32 ITIWREYGVVRSYTMESTYCGFDQGS-FKIGTKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQESW  110 (128)
Q Consensus        32 V~~~~~~gi~~syTlE~Sf~G~dlg~-~kf~~kdL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~~~~~  110 (128)
                      |.+.+..|+..+. -.++..|.|+|+ |.-+....+|.++++.+++.+.   .+.+|+|+|++|+..+.|+|||.....|
T Consensus       222 vP~~NPDG~~~~~-~R~n~~GvDLNRnf~g~~~~sepEt~a~~~~l~~~---~~~~~iDlHs~~~~p~~f~~g~~~~p~~  297 (395)
T 3l2n_A          222 VPNMNPDGSVRGH-LRTNAVGANLNREWQTPSLERSPEVYYVVNKMHET---GVDLFYDVHGDEGLPYVFLAGCEGIPNY  297 (395)
T ss_dssp             ESCSCHHHHHTTC-SSCCTTSCCGGGCSSSCCTTTCHHHHHHHHHHHHH---CCSEEEEEEEESSCSSBEEECCTTSTTC
T ss_pred             EeccCCchhhhcc-cccccCCCCcccccCCCCcCCCHHHHHHHHHHHhC---CCcEEEEeccCCCCCceEeccccCCCCc
Confidence            5666777776543 367889999996 3333445678899988887653   7999999999999999999999765444

>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A {Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*

Probab=97.55  E-value=2.9e-05  Score=64.54  Aligned_cols=73  Identities=16%  Similarity=0.216  Sum_probs=55.4

Q ss_pred             EEEeeeecceeeeeeeccccccccCC-ccccchhHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccCCCC
Q psy3963          32 ITIWREYGVVRSYTMESTYCGFDQGS-FKIGTKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQE  108 (128)
Q Consensus        32 V~~~~~~gi~~syTlE~Sf~G~dlg~-~kf~~kdL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~~~  108 (128)
                      |.+.+..|+..+. -.++..|.|+|+ +..+....+|.++++.+++.+.   .+.+|+|+|++++..+.|+|||....
T Consensus       217 vP~~NPDG~~~~~-~R~n~~GvDLNRnf~~~~~~s~pEt~al~~~~~~~---~~~~~iDlHs~~~~p~~~~yg~~~~p  290 (388)
T 4a37_A          217 VPNMNPDGAFHGN-LRTNAAGQDLNRAWLEPSAERSPEVWFVQQEMKRH---GVDLFLDIHGDEEIPHVFAAGCEGNP  290 (388)
T ss_dssp             ESCSCHHHHHTTC-SSCCTTSCCGGGCSSSCCTTTCHHHHHHHHHHHHH---CCSEEEEEEEESSCSSCEEECCTTCT
T ss_pred             EeccCchHHHhcC-CcccCCCcCCCCCCCCCCcccCHHHHHHHHHHHhc---CCcEEEEeccCCCCCCeEecCCccCC
Confidence            5566666766542 367889999996 3344455678888888887653   69999999999999999999997533

>3k2k_A Putative carboxypeptidase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.49A {Burkholderia mallei atcc 23344}

Probab=97.55  E-value=2.9e-05  Score=64.96  Aligned_cols=76  Identities=13%  Similarity=0.140  Sum_probs=57.3

Q ss_pred             EEEeeeecceeeeeeeccccccccCC-ccccchhHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccCCCCCc
Q psy3963          32 ITIWREYGVVRSYTMESTYCGFDQGS-FKIGTKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQESW  110 (128)
Q Consensus        32 V~~~~~~gi~~syTlE~Sf~G~dlg~-~kf~~kdL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~~~~~  110 (128)
                      |.+.+..|+..+. -.++..|.|+|+ +.-+....+|.++++.+++.+.   .+.+|+|+|++++..+.|+|||.....|
T Consensus       231 vP~lNPDG~~~~~-~R~n~~GvDLNRnf~~~~~~sepEt~al~~~~~~~---~~~~~iDlHs~~~~P~~f~~g~~~~p~~  306 (403)
T 3k2k_A          231 VPNMNPDGSVHGN-LRTNAAGANLNREWMEPDAERSPEVLVVRDAIHAI---GCDLFFDIHGDEDLPYVFAAGSEMLPGF  306 (403)
T ss_dssp             ESCSCHHHHHTTC-SSCCTTSCCGGGCSSSCCTTTCHHHHHHHHHHHHH---CCSEEEEEEEESSCCSBEEECSTTSTTC
T ss_pred             EeccCchHHhhcc-cccCCCCCCcccccccCCcCCCHHHHHHHHHHHhc---CCcEEEEeccCCCCCCccccCcccCCcc
Confidence            5556666666543 367889999996 3334455678889888887653   6999999999999999999999875554


Q ss_pred             c
Q psy3963         111 L  111 (128)
Q Consensus       111 ~  111 (128)
                      .
T Consensus       307 ~  307 (403)
T 3k2k_A          307 T  307 (403)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A, structural genomics, joint CENT structural genomics, JCSG; 2.39A {Shewanella denitrificans}

Probab=96.69  E-value=0.0011  Score=55.20  Aligned_cols=76  Identities=12%  Similarity=0.155  Sum_probs=60.8

Q ss_pred             hhhHHhHcCCCccCCCCeecccccccccceEE-----EeeeecceeeeeeeccccccccCC---ccccchhHHHHHHHHH
Q psy3963           2 LSRLLEQCALSFDPKSSHYKIERSKESTARIT-----IWREYGVVRSYTMESTYCGFDQGS---FKIGTKESMKIVRGLI   73 (128)
Q Consensus         2 ~P~lls~~~p~Fs~~~C~F~v~k~Ke~TaRV~-----~~~~~gi~~syTlE~Sf~G~dlg~---~kf~~kdL~pigk~L~   73 (128)
                      ++..+++.+|.|.   +.|.+.+.+.+.+++.     ++.++|+ -+||+|.+|+|.+.++   +.|..+++.++|+.++
T Consensus       308 ~~~al~~~~~~~g---~~y~~~~~~~~~~~~~~a~d~~~~~~g~-~s~T~El~~~~~~~~~~~~~g~~~~~~~~~g~e~l  383 (395)
T 3l2n_A          308 FVAALSLASADFQ---TEFGYDKDEPGKANLTVACNWVANTFKC-LSNTLEMPFKDNANLADPFQGWSPERSVYFGEASL  383 (395)
T ss_dssp             HHHHHHHHCTTBC---SSSSCCCCCTTCCCTTSHHHHHHHHHTC-EEEEEEEESSCCGGGCCTTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhchhcC---CcceeCCCCCCccccchHHHHHHHhcCc-EEEEEEecCcccCCCCCcccCcCHHHHHHHHHHHH
Confidence            4567888888874   7888888877766655     5566788 9999999999997643   4588999999999999


Q ss_pred             HHHHHHhc
Q psy3963          74 EFCTRVLK   81 (128)
Q Consensus        74 e~l~~ll~   81 (128)
                      +.|..+++
T Consensus       384 ~al~~~~~  391 (395)
T 3l2n_A          384 IAMRAVID  391 (395)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHH
Confidence            99987664

>3k2k_A Putative carboxypeptidase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.49A {Burkholderia mallei atcc 23344}

Probab=95.22  E-value=0.015  Score=48.49  Aligned_cols=76  Identities=11%  Similarity=0.083  Sum_probs=58.8

Q ss_pred             hhhHHhHcCCCccCCCCeecccccccccceEE-----EeeeecceeeeeeeccccccccCCc---cccchhHHHHHHHHH
Q psy3963           2 LSRLLEQCALSFDPKSSHYKIERSKESTARIT-----IWREYGVVRSYTMESTYCGFDQGSF---KIGTKESMKIVRGLI   73 (128)
Q Consensus         2 ~P~lls~~~p~Fs~~~C~F~v~k~Ke~TaRV~-----~~~~~gi~~syTlE~Sf~G~dlg~~---kf~~kdL~pigk~L~   73 (128)
                      ++..|.+.+|.|.   ..|.+..++.++++..     ++.++|+ -+||+|.+|.+.|.++.   -++.+...++|..++
T Consensus       317 ~~~al~~~~~~~g---~~y~~~~~~~~~~~~~~a~~~~~~~~g~-~s~TlEmpf~~n~~~p~~~~g~~~~r~~~~g~~~l  392 (403)
T 3k2k_A          317 FIDSFKRASPDFQ---DEHGYPPGKYREDAFKLASKYIGHRFGC-LSLTLEMPFKDNANLPDEHIGWNGARSASLGAAML  392 (403)
T ss_dssp             HHHHHHHHCTTBC---SSSCCCGGGSTTTGGGSHHHHHHHHHCS-EEEEEEEESSCCTTSCCTTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhchhcC---CeEEecCcCCcccccchhHHHHHhhcCC-eEEEEecCCCCcCCCCCcccCcCHHHHHHHHHHHH
Confidence            3456677777763   6778777777777765     4466788 89999999999987752   388999999999999


Q ss_pred             HHHHHHhc
Q psy3963          74 EFCTRVLK   81 (128)
Q Consensus        74 e~l~~ll~   81 (128)
                      +.|..+++
T Consensus       393 ~a~~~~~~  400 (403)
T 3k2k_A          393 GAILEHVR  400 (403)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98877653

>2qvp_A Uncharacterized protein; putative metallopeptidase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.00A {Shewanella amazonensis}

Probab=93.88  E-value=0.025  Score=44.08  Aligned_cols=57  Identities=12%  Similarity=0.055  Sum_probs=42.0

Q ss_pred             ccccccCCcccc--------chhHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccCCC
Q psy3963          50 YCGFDQGSFKIG--------TKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQ  107 (128)
Q Consensus        50 f~G~dlg~~kf~--------~kdL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~~  107 (128)
                      -.|.|+|| .|+        ...-.+.++++.+++..+.+.++.+++|+|+.++....++|++...
T Consensus       121 ~~g~DlNR-~f~~~~~~~~~~~~~~pE~~a~~~~~~~~~~~~~~~~idlHs~~~~~~~~~~~~~~~  185 (275)
T 2qvp_A          121 ELGENPNR-GFFIENGKAKPGADTSAEGRILLEHAHLLQVASRDGILTCHEDVLMTDTYVYTFEPS  185 (275)
T ss_dssp             TTSCCTTS-CCEEETTEEECCTTCCHHHHHHHHTHHHHHHHTTTCEEEEEEETTCSSBEEEEECSS
T ss_pred             CCCccCCC-CCCcccccCCCCCCCcHHHHHHHHHHHHhccCCceEEEEecCCCCCCCeEEecCCCC
Confidence            46899996 222        1124677888888876544468999999999998888888887654

>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A {Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*

Probab=93.10  E-value=0.085  Score=43.57  Aligned_cols=64  Identities=13%  Similarity=0.200  Sum_probs=50.4

Q ss_pred             CCeecccccccccceEEEe-----eeecceeeeeeeccccccccCC---ccccchhHHHHHHHHHHHHHHHhc
Q psy3963          17 SSHYKIERSKESTARITIW-----REYGVVRSYTMESTYCGFDQGS---FKIGTKESMKIVRGLIEFCTRVLK   81 (128)
Q Consensus        17 ~C~F~v~k~Ke~TaRV~~~-----~~~gi~~syTlE~Sf~G~dlg~---~kf~~kdL~pigk~L~e~l~~ll~   81 (128)
                      .+.|....++.++++..+.     .++|+ .+||+|++|.|.+.++   +.++.+...++|..+++.|..+++
T Consensus       314 ~t~~~y~~~~~~~~~l~~a~~~~~~~~g~-~s~TlEmpf~~~~~~~~~~~g~~~~~~~~~g~~~l~~l~~~~~  385 (388)
T 4a37_A          314 QIRHGYPRSAPGQANLALACNFVGQTYDC-LAFTIEMPFKDHDDNPEPGTGWSGARSKRLGQDVLSTLAVLVD  385 (388)
T ss_dssp             CSSSCSCCCCTTCCCTTSHHHHHHHHHTC-EEEEEEEESSCCTTSCCTTTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             CCCcccCCcCCCchhhhHHHHHHHhhcCc-eEEEEeCCCCCCCCCCCcCcCcCHHHHHHHHHHHHHHHHHHHH
Confidence            3567777777788776543     34677 9999999999998764   348899999999999999987764

>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase inhibitor, hydrolase/hydrolase inhibitor complex; HET: GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1

Probab=92.46  E-value=0.14  Score=40.31  Aligned_cols=34  Identities=15%  Similarity=0.253  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEec
Q psy3963          65 SMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYG  103 (128)
Q Consensus        65 L~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yG  103 (128)
                      .+|.++++.+++.+.  .++.+++|+|+++.   +++|.
T Consensus       166 sepEt~a~~~~~~~~--~~~~~~idlHs~~~---~~~~P  199 (303)
T 1dtd_A          166 SEVEVKSIVDFIKSH--GKVKAFIILHSYSQ---LLMFP  199 (303)
T ss_dssp             CSHHHHHHHHHHHHH--CCEEEEEEEEESSC---EEEES
T ss_pred             CcHHHHHHHHHHHhC--CCeEEEEEeeCCCC---eEEeC
Confidence            567889999988654  57999999999994   45553

>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*

Probab=91.26  E-value=0.1  Score=42.51  Aligned_cols=55  Identities=9%  Similarity=0.145  Sum_probs=38.2

Q ss_pred             eccccccccCCccccch------hHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccCC
Q psy3963          47 ESTYCGFDQGSFKIGTK------ESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSS  106 (128)
Q Consensus        47 E~Sf~G~dlg~~kf~~k------dL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~  106 (128)
                      ++...|.|+|| .|+..      -.+|.++++.+++.+   .++.+++|+||+++.- .+-||+..
T Consensus       132 R~n~~GvDLNR-nf~~~~~~~~~~sepEt~a~~~~~~~---~~~~~~idlH~~~~~~-~~py~~~~  192 (380)
T 1h8l_A          132 RNNSNNYDLNR-NFPDQFFQVTDPPQPETLAVMSWLKT---YPFVLSANLHGGSLVV-NYPFDDDE  192 (380)
T ss_dssp             TSCTTSCCGGG-CSCCSSSCCCSCCCHHHHHHHHHHHH---SCEEEEEEEECSEEEE-EESCSCCT
T ss_pred             CCCCCCCcccC-CCcccccccCCCCChHHHHHHHHHHh---CCceEEEEEecCCEEE-EecCCCCC
Confidence            34568999995 22221      146788988888765   3789999999999764 45677754

>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris} PDB: 1obr_A 3qnv_A

Probab=90.51  E-value=0.21  Score=39.82  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHh---cCCCeEEEecCCCCCccceeEecc
Q psy3963          65 SMKIVRGLIEFCTRVL---KKTPYFYCDFHGHSLKKNIFLYGC  104 (128)
Q Consensus        65 L~pigk~L~e~l~~ll---~~~~~~y~D~HGHSrk~N~F~yGc  104 (128)
                      .+|.++++.+++.+..   ..++.+++|+|+++.   +++|..
T Consensus       175 sepEt~a~~~~~~~~~~~~~~~~~~~idlHs~~~---~~~ypy  214 (323)
T 3prt_A          175 SAPETAAMRDFINSRVVGGKQQIKTLITFHTYSE---LILYPY  214 (323)
T ss_dssp             CSHHHHHHHHHHHHTEETTEECEEEEEEEEESSS---EEEESC
T ss_pred             CcHHHHHHHHHHHHhhhccccCeEEEEEccCCCc---eEEecC
Confidence            4688999999988753   237899999999996   555544

>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa} SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A* 2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A* 2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A* 2pjc_A* 1zli_A ...

Probab=90.32  E-value=0.22  Score=39.16  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=28.0

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeE--eccC
Q psy3963          64 ESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFL--YGCS  105 (128)
Q Consensus        64 dL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~--yGc~  105 (128)
                      ...|.++++.+++.+. ..++.+++|+|+++   .+++  ||+.
T Consensus       168 ~sepEt~a~~~~~~~~-~~~~~~~idlHs~~---~~~~~Py~~~  207 (306)
T 1z5r_A          168 ESEKETKALADFIRNN-LSSIKAYLTIHSYS---QMILYPYSYD  207 (306)
T ss_dssp             TCSHHHHHHHHHHHHT-TTTEEEEEEEEESS---SEEEESCSSS
T ss_pred             CCcHHHHHHHHHHHHh-ccCeEEEEEEeCCC---CeEEeCCCCC
Confidence            3467889999988763 34799999999998   3455  4654

>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP: c.56.5.1

Probab=89.03  E-value=0.31  Score=38.37  Aligned_cols=54  Identities=17%  Similarity=0.186  Sum_probs=37.3

Q ss_pred             ccccccccCC-cc--cc----------------chhHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeE--eccC
Q psy3963          48 STYCGFDQGS-FK--IG----------------TKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFL--YGCS  105 (128)
Q Consensus        48 ~Sf~G~dlg~-~k--f~----------------~kdL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~--yGc~  105 (128)
                      ++..|.|+|+ +-  +.                .....|.++++.+++.+. ..++.+++|+|+++.   +++  ||+.
T Consensus       132 ~~~~GvDLNRnf~~~w~~~g~s~~p~~~~y~G~~~~sepEt~al~~~~~~~-~~~~~~~idlHs~~~---~~~~P~~~~  206 (312)
T 2c1c_A          132 QICRGADGNRNFDFVWNSIGTSNSPCSDIYAGTSAFSEVETRVVRDILHEH-LARMALYLTMHSFGS---MILYPWGHD  206 (312)
T ss_dssp             GTSCCCCGGGCSSSSTTSSSCBSCTTSTTBCCSSTTCSHHHHHHHHHHHHH-GGGEEEEEEEEESSS---EEEESCTTT
T ss_pred             ccccCCCcccCCCcCCCCCCCCCCCCccccCCCCCCCCHHHHHHHHHHHhc-cCCeeEEEEEecCCC---eEEeCCCCC
Confidence            5678999995 21  11                123467889999988764 347899999999984   455  5654

>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase; 1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A

Probab=88.73  E-value=0.36  Score=39.80  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEe
Q psy3963          65 SMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLY  102 (128)
Q Consensus        65 L~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~y  102 (128)
                      ..|.++++.+++.+.  .++.+++|+||++   ++++|
T Consensus       264 sepEt~al~~~~~~~--~~~~~~idlHs~~---~~~~~  296 (401)
T 1aye_A          264 SEVEVKSIVDFIKSH--GKVKAFIILHSYS---QLLMF  296 (401)
T ss_dssp             CSHHHHHHHHHHHHH--CCEEEEEEEEESS---CEEEE
T ss_pred             cCHHHHHHHHHHHcc--CCEEEEEEEcCCC---CEEEe
Confidence            567899999988764  5799999999999   46664

>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex, glycoprotein, hydrolase, metal-binding, metalloprotease, protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A

Probab=88.45  E-value=0.36  Score=37.93  Aligned_cols=37  Identities=27%  Similarity=0.319  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeE--eccC
Q psy3963          65 SMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFL--YGCS  105 (128)
Q Consensus        65 L~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~--yGc~  105 (128)
                      ..|.++++.+++.+. ..++.+++|+|+++   .+++  ||+.
T Consensus       171 sepEt~a~~~~~~~~-~~~~~~~idlH~~~---~~~~~Py~~~  209 (309)
T 3d4u_A          171 SEPEVKAVADFLRRN-IKHIKAYISMHSYS---QKIVFPYSYS  209 (309)
T ss_dssp             CSHHHHHHHHHHHHT-TTTEEEEEEEEESS---SEEEESCSSC
T ss_pred             CcHHHHHHHHHHHhc-ccceEEEEEEeCCC---cEEEeCCCCC
Confidence            457889999888763 33689999999998   4555  4553

>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa armigera} SCOP: c.56.5.1 d.58.3.1

Probab=88.11  E-value=0.37  Score=40.15  Aligned_cols=38  Identities=18%  Similarity=0.287  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccC
Q psy3963          64 ESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCS  105 (128)
Q Consensus        64 dL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~  105 (128)
                      ...|.++++.+++.+. ..++.+++|+|+++   ..++|...
T Consensus       280 ~sepEt~al~~~~~~~-~~~~~~~idlHs~~---~~~~~Py~  317 (433)
T 1jqg_A          280 FSEPESSVIRDIIAEH-RNRMALYLDIHSFG---SMILYGYG  317 (433)
T ss_dssp             TCSHHHHHHHHHHHHT-TTTEEEEEEEEESS---SEEEESCT
T ss_pred             CccHHHHHHHHHHHHh-cCCeEEEEEEcCCC---CEEEeCCC
Confidence            3567889999988763 35799999999999   46677554

>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}

Probab=87.36  E-value=0.43  Score=39.79  Aligned_cols=56  Identities=14%  Similarity=0.277  Sum_probs=39.3

Q ss_pred             eccccccccCC-cc--cc--------chhHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccCCCC
Q psy3963          47 ESTYCGFDQGS-FK--IG--------TKESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQE  108 (128)
Q Consensus        47 E~Sf~G~dlg~-~k--f~--------~kdL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~~~  108 (128)
                      .++-.|.|+|| |-  +.        ....+|.++++.+++.+   .++.+++|+||++.   +++|....+.
T Consensus       165 R~n~~GvDLNRnf~~~w~~~~~~~g~~~~sepEt~al~~~~~~---~~~~~~idlHs~~~---~~~yPy~~~~  231 (435)
T 3mn8_A          165 RGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAALVNWIVS---KPFVLSANFHGGAV---VASYPYDNSL  231 (435)
T ss_dssp             TSCTTCCCGGGCSCCTTC--------CCCSCHHHHHHHHHHTT---SCCCEEEEEECSSC---EEEESCSCCS
T ss_pred             CccccCCCcccCCCcccCcccccCCCCccchHHHHHHHHHHhh---cCCEEEEEEeCCCe---EEEcCCCCCc
Confidence            45678999995 22  11        12356788988887654   47899999999986   6677665543

>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A

Probab=86.89  E-value=0.48  Score=39.01  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=27.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEe
Q psy3963          64 ESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLY  102 (128)
Q Consensus        64 dL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~y  102 (128)
                      ...|.++++.+++.+. ..++.+++|+|+++   +.++|
T Consensus       263 ~sepEt~al~~~~~~~-~~~~~~~idlHs~~---~~~~~  297 (402)
T 1kwm_A          263 ESEKETKALADFIRNK-LSSIKAYLTIHSYS---QMMIY  297 (402)
T ss_dssp             TCSHHHHHHHHHHHHT-TTTEEEEEEEEESS---CEEEE
T ss_pred             CCcHHHHHHHHHHHhh-ccCeeEEEEEeCCC---CEEEe
Confidence            3467899999988764 34799999999998   56664

>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase, hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A 1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P 1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A* 3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...

Probab=86.67  E-value=0.51  Score=37.18  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEec
Q psy3963          65 SMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYG  103 (128)
Q Consensus        65 L~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yG  103 (128)
                      .+|.++++.+++..  ..++.+++|+|+++   .+++|-
T Consensus       172 sepEt~al~~~~~~--~~~~~~~idlH~~~---~~~~~P  205 (307)
T 1m4l_A          172 SEVEVKSIVDFVKD--HGNFKAFLSIHSYS---QLLLYP  205 (307)
T ss_dssp             CSHHHHHHHHHHHH--HCCEEEEEEEEESS---CEEEES
T ss_pred             CcHHHHHHHHHHHh--CCCeEEEEEEecCC---CEEEeC
Confidence            46788998888832  34799999999998   466643

>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1 PDB: 4a94_A 2pcu_A*

Probab=86.35  E-value=0.52  Score=37.02  Aligned_cols=36  Identities=25%  Similarity=0.427  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEe--ccC
Q psy3963          65 SMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLY--GCS  105 (128)
Q Consensus        65 L~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~y--Gc~  105 (128)
                      ..|.++++.+++ +. ..++.+++|+|+++   .+++|  |+.
T Consensus       171 sepEt~a~~~~~-~~-~~~~~~~idlHs~~---~~~~~P~~~~  208 (308)
T 2bo9_A          171 SEVEVKSVVDFI-QK-HGNFKGFIDLHSYS---QLLMYPYGYS  208 (308)
T ss_dssp             CSHHHHHHHHHH-HH-HCCEEEEEEEEESS---SEEEESCSSC
T ss_pred             CCHHHHHHHHHH-Hh-CCCeEEEEEEecCC---cEEEeCCCCC
Confidence            467889888888 42 34689999999998   46664  554

>3b2y_A Metallopeptidase containing CO-catalytic metalloa site; metallopeptidase containing CO-catalytic metalloactive site; 1.74A {Shewanella denitrificans OS217} PDB: 3ieh_A*

Probab=85.50  E-value=0.22  Score=39.05  Aligned_cols=56  Identities=11%  Similarity=0.110  Sum_probs=34.9

Q ss_pred             cccccccCC-cc--ccchhHHHHH-------HHHHHHHHHHhcCCCeEEEecCCCCCccceeEeccCCC
Q psy3963          49 TYCGFDQGS-FK--IGTKESMKIV-------RGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLYGCSSQ  107 (128)
Q Consensus        49 Sf~G~dlg~-~k--f~~kdL~pig-------k~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~yGc~~~  107 (128)
                      +-.|.|+|+ +.  .+...-+|.+       +++++++.+   ..+.++.|+|+++....++.||+...
T Consensus       121 n~~gvDLNRnf~~~~~~~~sepEt~~l~~~~~a~~~~~~~---~~~~~~id~H~~~~~~g~y~~~~~~~  186 (275)
T 3b2y_A          121 NRFGENPNRGFTLENGKPTPNEHTSLEGKLLLEHAQLLCA---ASRDGILTCHEDVLMNETYVYSFEPT  186 (275)
T ss_dssp             CTTSCCTTSCCCC---------CCCHHHHHHHTTHHHHHH---HTTTEEEEEEEETTCSSBEEEEECSS
T ss_pred             CCCCCccCcCCCCCCCCCCCCCCccccchHHHHHHHHHHh---cCCcEEEECCCCCcCCeEEecCCCCC
Confidence            468999996 22  1111123333       555555443   57899999999976778999998754

>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen, metalloprotease, exopropeptidase, hydrolase; HET: NAG; 2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1

Probab=85.40  E-value=0.59  Score=38.48  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeE--eccCC
Q psy3963          65 SMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFL--YGCSS  106 (128)
Q Consensus        65 L~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~--yGc~~  106 (128)
                      ..|.++++.+++ +. ..++.+++|+|+++   +.++  ||+..
T Consensus       267 sepEt~al~~~~-~~-~~~~~~~idlHs~~---~~~l~Py~~~~  305 (404)
T 2boa_A          267 SEVEVKSVVDFI-QK-HGNFKGFIDLHSYS---QLLMYPYGYSV  305 (404)
T ss_dssp             CSHHHHHHHHHH-HH-HCCEEEEEEEEESS---CEEEESCSSCS
T ss_pred             CCHHHHHHHHHH-Hc-CCCEEEEEEEeCCC---CEEEeccCCCC
Confidence            457889999888 43 34689999999998   5566  46543

>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1

Probab=84.99  E-value=0.53  Score=38.96  Aligned_cols=45  Identities=13%  Similarity=0.220  Sum_probs=33.0

Q ss_pred             ccccccccCCccccc------hhHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCc
Q psy3963          48 STYCGFDQGSFKIGT------KESMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLK   96 (128)
Q Consensus        48 ~Sf~G~dlg~~kf~~------kdL~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk   96 (128)
                      ++..|.|+|| .|+.      ....|.++++.+++.+.   ++.+++|+||++..
T Consensus       128 ~n~~GvDLNR-nf~~~w~~~~~~sepEt~al~~~~~~~---~~~~~idlHs~~~~  178 (426)
T 1uwy_A          128 ENYNQYDLNR-NFPDAFEYNNVSRQPETVAVMKWLKTE---TFVLSANLHGGALV  178 (426)
T ss_dssp             SCTTSCCTTS-CSCCSSSCCCCCCCHHHHHHHHHHHHS---CEEECCEEECSEEE
T ss_pred             CCCcCCCCCC-CCCCCCCcCCccccHHHHHHHHHHhcc---CeEEEEEEcCCCeE
Confidence            4568999995 2332      23567888888877653   78999999999963

>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens}

Probab=83.10  E-value=0.74  Score=38.15  Aligned_cols=36  Identities=17%  Similarity=0.226  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEe--ccCC
Q psy3963          65 SMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLY--GCSS  106 (128)
Q Consensus        65 L~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~y--Gc~~  106 (128)
                      .+|.++++.+++.+.   ++.+++|+||++.   +++|  |...
T Consensus       174 sepEt~al~~~~~~~---~~~~~idlHs~~~---~~~yPy~~~~  211 (439)
T 2nsm_A          174 VEPETRAVIRWMHSF---NFVLSANLHGGAV---VANYPYDKSF  211 (439)
T ss_dssp             SCHHHHHHHHHHHHS---CEEEEEEEECSEE---EEEESCCSCC
T ss_pred             CCHHHHHHHHHHHhC---CcEEEEEcccCCE---EEEecCCCCc
Confidence            467889999988764   7899999999986   4444  6543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d2c1ca1	312	Carboxypeptidase B {Corn earworm (Helicoverpa zea)	83.2

>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm (Helicoverpa zea) [TaxId: 7113]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Pancreatic carboxypeptidases
domain: Carboxypeptidase B
species: Corn earworm (Helicoverpa zea) [TaxId: 7113]

Probab=83.20  E-value=0.38  Score=36.41  Aligned_cols=34  Identities=18%  Similarity=0.221  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEecCCCCCccceeEe
Q psy3963          65 SMKIVRGLIEFCTRVLKKTPYFYCDFHGHSLKKNIFLY  102 (128)
Q Consensus        65 L~pigk~L~e~l~~ll~~~~~~y~D~HGHSrk~N~F~y  102 (128)
                      .+|.++++.+++.+. ...+.+|+|+|+++   +.++|
T Consensus       168 SepEt~av~~~~~~~-~~~i~~~l~~Hs~g---~~i~~  201 (312)
T d2c1ca1         168 SEVETRVVRDILHEH-LARMALYLTMHSFG---SMILY  201 (312)
T ss_dssp             CSHHHHHHHHHHHHH-GGGEEEEEEEEESS---SEEEE
T ss_pred             cChHHHHHHHHHHhc-ccceeEEEEecCCC---ceEEe
Confidence            457899999988764 33588999999987   45664